teradataml 17.20.0.6__py3-none-any.whl → 20.0.0.0__py3-none-any.whl

teradataml/data/scripts/sklearn/sklearn_neighbors.py

@@ -0,0 +1,152 @@
+import pickle
+import math
+import sys
+import numpy as np
+
+# The below import is needed to convert sparse matrix to dense array as sparse matrices are NOT
+# supported in Vantage.
+# This is in scipy 1.6.x. Might vary based on scipy version.
+from scipy.sparse.csr import csr_matrix
+
+
+DELIMITER = '\t'
+
+
+def get_value(value):
+    ret_val = value
+    try:
+        ret_val = float(value.replace(' ', ''))
+    except Exception as ex:
+        # If the value can't be converted to float, then it is string.
+        pass
+    return ret_val
+
+
+def get_values_list(values, ignore_none=True):
+    ret_vals = []
+    for val in values:
+        if val == "" and ignore_none:
+            # Empty cell value in the database table.
+            continue
+        ret_vals.append(get_value(val))
+
+    return ret_vals
+
+def convert_to_type(val, typee):
+    if typee == 'int':
+        return int(val)
+    if typee == 'float':
+        return float(val)
+    if typee == 'bool':
+        return eval(val)
+    return str(val)
+
+def splitter(strr, delim=",", convert_to="str"):
+    """
+    Split the string based on delimiter and convert to the type specified.
+    """
+    if strr == "None":
+        return []
+    return [convert_to_type(i, convert_to) for i in strr.split(delim)]
+
+
+# Arguments to the Script
+if len(sys.argv) < 7:
+    # At least 7 arguments command line arguments should be passed to this file.
+    # 1: file to be run
+    # 2. function name.
+    # 3. No of feature columns.
+    # 4. Comma separated indices of partition columns.
+    # 5. Comma separated types of the partition columns.
+    # 6. Model file prefix to generate model file using partition columns.
+    # 7. Flag to check the system type. True, means Lake, Enterprise otherwise.
+    # 8. OPTIONAL - Arguments in string format like "return_distance True-bool",
+    #    "n_neighbors 3-int", "radius 3.4-float" etc.
+    sys.exit("At least 7 arguments should be passed to this file - file to be run, function name, "\
+             "no of feature columns, comma separated indices and types of partition columns, "\
+             "model file prefix to generate model file using partition columns, flag to check "\
+             "lake or enterprise and optional arguments in string format.")
+
+convert_to_int = lambda x: int(x) if x != "None" else None
+
+is_lake_system = eval(sys.argv[6])
+if not is_lake_system:
+    db = sys.argv[0].split("/")[1]
+func_name = sys.argv[1]
+n_f_cols = convert_to_int(sys.argv[2])
+data_partition_column_types = splitter(sys.argv[4])
+data_partition_column_indices = splitter(sys.argv[3], convert_to="int") # indices are integers.
+model_file_prefix = sys.argv[5]
+# Extract arguments from string.
+arguments = {}
+for i in range(7, len(sys.argv), 2):
+    value = sys.argv[i + 1].split("-", 1)
+    arguments[sys.argv[i]] = convert_to_type(value[0], value[1])
+
+model = None
+data_partition_column_values = []
+
+# Data Format:
+# feature1, feature2, ..., featuren, label1, label2, ... labelk, data_partition_column1, ..., 
+# data_partition_columnn.
+# label is optional (it is present when label_exists is not "None")
+
+# `return_distance` is needed as the result is a tuple of two arrays when it is True.
+return_distance = arguments.get("return_distance", True) # Default value is True.
+
+while 1:
+    try:
+        line = input()
+        if line == '':  # Exit if user provides blank line
+            break
+        else:
+            values = line.split(DELIMITER)
+            if not data_partition_column_values:
+                # Partition column values is same for all rows. Hence, only read once.
+                for i, val in enumerate(data_partition_column_indices):
+                    data_partition_column_values.append(
+                        convert_to_type(values[val], typee=data_partition_column_types[i])
+                        )
+
+                # Prepare the corresponding model file name and extract model.
+                partition_join = "_".join([str(x) for x in data_partition_column_values])
+                # Replace '-' with '_' as '-' because partition_columns can be negative.
+                partition_join = partition_join.replace("-", "_")
+
+                model_file_path = f"{model_file_prefix}_{partition_join}" \
+                    if is_lake_system else \
+                    f"./{db}/{model_file_prefix}_{partition_join}"
+
+                with open(model_file_path, "rb") as fp:
+                    model = pickle.loads(fp.read())
+
+                if not model:
+                    sys.exit("Model file is not installed in Vantage.")
+
+            f_ = get_values_list(values[:n_f_cols])
+            if f_:
+                output = getattr(model, func_name)(np.array([f_]), **arguments)
+            else:
+                output = getattr(model, func_name)(**arguments)
+            result_list = f_
+
+            if func_name in ['kneighbors', 'radius_neighbors']:
+                if return_distance:
+                    result_list += [str(output[0][0].tolist()), str(output[1][0].tolist())]
+                else:
+                    result_list += [str(output[0].tolist())]
+            else:
+                # cases like 'kneighbors_graph', 'radius_neighbors_graph' and other functions.
+                if isinstance(output, csr_matrix):
+                    # 'kneighbors_graph', 'radius_neighbors_graph' return sparse matrix.
+                    output = output.toarray()
+                result_list += [str(output[0].tolist())]
+
+            print(*(data_partition_column_values +
+                    ['' if (val is None or (not isinstance(val, str) and
+                                            (math.isnan(val) or math.isinf(val))))
+                        else val
+                    for val in result_list]), sep=DELIMITER)
+
+    except EOFError:  # Exit if reached EOF or CTRL-D
+        break

teradataml/data/scripts/sklearn/sklearn_score.py

@@ -0,0 +1,128 @@
+import pickle
+import math
+import sys
+import numpy as np
+
+DELIMITER = '\t'
+
+
+def get_value(value):
+    ret_val = value
+    try:
+        ret_val = float("".join(value.split()))
+    except Exception as ex:
+        # If the value can't be converted to float, then it is string.
+        pass
+    return ret_val
+
+
+def get_values_list(values, ignore_none=True):
+    ret_vals = []
+    for val in values:
+        if val == "" and ignore_none:
+            # Empty cell value in the database table.
+            continue
+        ret_vals.append(get_value(val))
+
+    return ret_vals
+
+def convert_to_type(val, typee):
+    if typee == 'int':
+        return int(val)
+    if typee == 'float':
+        return float(val)
+    if typee == 'bool':
+        return bool(val)
+    return str(val)
+
+def splitter(strr, delim=",", convert_to="str"):
+    """
+    Split the string based on delimiter and convert to the type specified.
+    """
+    if strr == "None":
+        return []
+    return [convert_to_type(i, convert_to) for i in strr.split(delim)]
+
+# Arguments to the Script
+if len(sys.argv) != 8:
+    # 8 command line arguments should be passed to this file.
+    # 1: file to be run
+    # 2. function name (Eg. score, aic etc)
+    # 3. No of feature columns.
+    # 4. No of class labels.
+    # 5. Comma separated indices of partition columns.
+    # 6. Comma separated types of the partition columns.
+    # 7. Model file prefix to generated model file using partition columns.
+    # 8. Flag to check the system type. True, means Lake, Enterprise otherwise.
+    sys.exit("8 arguments should be passed to this file - file to be run, function name, "\
+             "no of feature columns, no of class labels, comma separated indices and types of "\
+             "partition columns, model file prefix to generate model file using partition "\
+             "columns and flag to check lake or enterprise.")
+
+is_lake_system = eval(sys.argv[7])
+if not is_lake_system:
+    db = sys.argv[0].split("/")[1]
+func_name = sys.argv[1]
+n_f_cols = int(sys.argv[2])
+n_c_labels = int(sys.argv[3])
+data_partition_column_types = splitter(sys.argv[5])
+data_partition_column_indices = splitter(sys.argv[4], convert_to="int") # indices are integers.
+model_file_prefix = sys.argv[6]
+
+model = None
+
+# Data Format (n_features, k_labels, one data_partition_column):
+# feature1, feature2, ..., featuren, label1, label2, ... labelk, data_partition_column1, ..., 
+# data_partition_columnn.
+# labels are optional.
+
+data_partition_column_values = []
+
+features = []
+labels = []
+while 1:
+    try:
+        line = input()
+        if line == '':  # Exit if user provides blank line
+            break
+        else:
+            values = line.split(DELIMITER)
+            features.append(get_values_list(values[:n_f_cols]))
+            if n_c_labels > 0:
+                labels.append(get_values_list(values[n_f_cols:(n_f_cols+n_c_labels)]))
+
+            if not data_partition_column_values:
+                # Partition column values is same for all rows. Hence, only read once.
+                for i, val in enumerate(data_partition_column_indices):
+                    data_partition_column_values.append(
+                        convert_to_type(values[val], typee=data_partition_column_types[i])
+                        )
+
+                # Prepare the corresponding model file name and extract model.
+                partition_join = "_".join([str(x) for x in data_partition_column_values])
+                # Replace '-' with '_' as '-' because partition_columns can be negative.
+                partition_join = partition_join.replace("-", "_")
+
+                model_file_path = f"{model_file_prefix}_{partition_join}" \
+                    if is_lake_system else \
+                    f"./{db}/{model_file_prefix}_{partition_join}"
+
+                with open(model_file_path, "rb") as fp:
+                    model = pickle.loads(fp.read())
+
+                if not model:
+                    sys.exit("Model file is not installed in Vantage.")
+
+    except EOFError:  # Exit if reached EOF or CTRL-D
+        break
+
+if len(features) == 0:
+    sys.exit(0)
+
+if labels:
+    val = getattr(model, func_name)(np.array(features), np.array(labels))
+else:
+    val = getattr(model, func_name)(np.array(features))
+
+result_val = ['' if (val is None or math.isnan(val) or math.isinf(val)) else val]
+print(*(data_partition_column_values + result_val), sep=DELIMITER)

teradataml/data/scripts/sklearn/sklearn_transform.py

@@ -0,0 +1,179 @@
+import pickle
+import math
+import os
+import sys
+import numpy as np
+
+# The below import is needed to convert sparse matrix to dense array as sparse matrices are NOT
+# supported in Vantage.
+# This is in scipy 1.10.0. Might vary based on scipy version.
+from scipy.sparse import csr_matrix
+
+DELIMITER = '\t'
+
+def get_value(value):
+    ret_val = value
+    try:
+        ret_val = float(value.replace(' ', ''))
+    except Exception as ex:
+        # If the value can't be converted to float, then it is string.
+        pass
+    return ret_val
+
+
+def get_values_list(values, ignore_none=True):
+    ret_vals = []
+    for val in values:
+        if val == "" and ignore_none:
+            # Empty cell value in the database table.
+            continue
+        ret_vals.append(get_value(val))
+
+    return ret_vals
+
+def convert_to_type(val, typee):
+    if typee == 'int':
+        return int(val)
+    if typee == 'float':
+        return float(val)
+    if typee == 'bool':
+        return eval(val)
+    return str(val)
+
+def splitter(strr, delim=",", convert_to="str"):
+    """
+    Split the string based on delimiter and convert to the type specified.
+    """
+    if strr == "None":
+        return []
+    return [convert_to_type(i, convert_to) for i in strr.split(delim)]
+
+# Process output returned by sklearn function.
+def get_output_data(trans_values, func_name, model_obj, n_c_labels):
+    # Converting sparse matrix to dense array as sparse matrices are NOT
+    # supported in Vantage.
+    module_name = model_obj.__module__.split("._")[0]
+
+    if isinstance(trans_values, csr_matrix):
+        trans_values = trans_values.toarray()
+
+    if module_name == "sklearn.cross_decomposition" and n_c_labels > 0 and func_name == "transform":
+        # For cross_decomposition, output is a tuple of arrays when label columns are provided
+        # along with feature columns for transform function. In this case, concatenate the
+        # arrays and return the combined values.
+        if isinstance(trans_values, tuple):
+            return np.concatenate(trans_values, axis=1).tolist()[0]
+
+    if isinstance(trans_values[0], np.ndarray) \
+            or isinstance(trans_values[0], list) \
+            or isinstance(trans_values[0], tuple):
+        # Here, the value returned by sklearn function is list type.
+        opt_list = list(trans_values[0])
+        if func_name == "inverse_transform" and type(model_obj).__name__ == "MultiLabelBinarizer":
+            # output array "trans_values[0]" may not be of same size. It should be of
+            # maximum size of `model.classes_`
+            # Append None to last elements.
+            if len(opt_list) < len(model_obj.classes_):
+                opt_list += [""] * (len(model_obj.classes_) - len(opt_list))
+        return opt_list
+    return [trans_values[0]]
+
+# Arguments to the Script
+if len(sys.argv) != 8:
+    # 8 arguments command line arguments should be passed to this file.
+    # 1: file to be run
+    # 2. function name (Eg. predict, fit etc)
+    # 3. No of feature columns.
+    # 4. No of class labels.
+    # 5. Comma separated indices of partition columns.
+    # 6. Comma separated types of the partition columns.
+    # 7. Model file prefix to generated model file using partition columns.
+    # 8. Flag to check the system type. True, means Lake, Enterprise otherwise.
+    sys.exit("8 arguments should be passed to this file - file to be run, function name, "\
+             "no of feature columns, no of class labels, comma separated indices and types of "\
+             "partition columns, model file prefix to generate model file using partition "\
+             "columns and flag to check lake or enterprise.")
+
+is_lake_system = eval(sys.argv[7])
+if not is_lake_system:
+    db = sys.argv[0].split("/")[1]
+func_name = sys.argv[1]
+n_f_cols = int(sys.argv[2])
+n_c_labels = int(sys.argv[3])
+data_partition_column_types = splitter(sys.argv[5])
+data_partition_column_indices = splitter(sys.argv[4], convert_to="int") # indices are integers.
+model_file_prefix = sys.argv[6]
+
+model = None
+data_partition_column_values = []
+
+# Data Format:
+# feature1, feature2, ..., featuren, label1, label2, ... labelk, data_partition_column1, ..., 
+# data_partition_columnn.
+# label is optional (it is present when label_exists is not "None")
+
+while 1:
+    try:
+        line = input()
+        if line == '':  # Exit if user provides blank line
+            break
+        else:
+            values = line.split(DELIMITER)
+            if not data_partition_column_values:
+                # Partition column values is same for all rows. Hence, only read once.
+                for i, val in enumerate(data_partition_column_indices):
+                    data_partition_column_values.append(
+                        convert_to_type(values[val], typee=data_partition_column_types[i])
+                        )
+
+                # Prepare the corresponding model file name and extract model.
+                partition_join = "_".join([str(x) for x in data_partition_column_values])
+                # Replace '-' with '_' as '-' because partition_columns can be negative.
+                partition_join = partition_join.replace("-", "_")
+
+                model_file_path = f"{model_file_prefix}_{partition_join}" \
+                    if is_lake_system else \
+                    f"./{db}/{model_file_prefix}_{partition_join}"
+
+                with open(model_file_path, "rb") as fp:
+                    model = pickle.loads(fp.read())
+
+                if not model:
+                    sys.exit("Model file is not installed in Vantage.")
+
+            f_ = get_values_list(values[:n_f_cols])
+            if n_c_labels > 0:
+                # Labels are present in last column.
+                l_ = get_values_list(values[n_f_cols:n_f_cols+n_c_labels])
+                # predict() now takes 'y' also for it to return the labels from script. Skipping 'y'
+                # in function call. Generally, 'y' is passed to return y along with actual output.
+                try:
+                    # cross_composition functions uses Y for labels.
+                    # used 'in' in if constion, as model.__module__ is giving 
+                    # 'sklearn.cross_decomposition._pls'.  
+                    if "cross_decomposition" in model.__module__:
+                        trans_values = getattr(model, func_name)(X=np.array([f_]), Y=np.array([l_]))
+                    else:
+                        trans_values = getattr(model, func_name)(X=np.array([f_]), y=np.array([l_]))
+
+                except TypeError as ex:
+                    # Function which does not accept 'y' like predict_proba() raises error like
+                    # "TypeError: predict_proba() takes 2 positional arguments but 3 were given".
+                    trans_values = getattr(model, func_name)(np.array([f_]))
+            else:
+                # If class labels do not exist in data, don't read labels, read just features.
+                trans_values = getattr(model, func_name)(np.array([f_]))
+
+            result_list = f_
+            if n_c_labels > 0 and func_name in ["predict", "decision_function"]:
+                result_list += l_
+            result_list += get_output_data(trans_values=trans_values, func_name=func_name,
+                                           model_obj=model, n_c_labels=n_c_labels)
+
+            print(*(data_partition_column_values +
+                    ['' if (val is None or math.isnan(val) or math.isinf(val))
+                     else val for val in result_list]),
+                     sep=DELIMITER)
+
+    except EOFError:  # Exit if reached EOF or CTRL-D
+        break

teradataml/data/templates/open_source_ml.json

@@ -0,0 +1,9 @@
+{
+  "env_specs": [
+    {
+      "env_name": "openml_env",
+      "libs": "scikit-learn",
+      "desc": "DONT DELETE: OpenML environment"
+    }
+  ]
+}

teradataml/data/teradataml_example.json

@@ -1200,5 +1200,77 @@
     "column_name": "VARCHAR(20)",
     "category": "VARCHAR(50)",
     "ordinal_value": "INTEGER"
+  },
+  "insurance":{
+    "age":"INTEGER",
+    "sex":"VARCHAR(20)",
+    "bmi":"FLOAT",
+    "children":"INTEGER",
+    "smoker":"VARCHAR(20)",
+    "region":"VARCHAR(20)",
+    "charges":"FLOAT"
+  },
+  "bank_churn":{
+    "customer_id":"BIGINT",
+    "credit_score":"BIGINT",
+    "country":"VARCHAR(256)",
+    "gender":"varchar(20)",
+    "age":"INTEGER",
+    "tenure":"BIGINT",
+    "balance":"FLOAT",
+    "products_number":"BIGINT",
+    "credit_card":"BIGINT",
+    "active_member":"BIGINT",
+    "estimated_salary":"FLOAT",
+    "churn":"BIGINT"
+  },
+  "wine_data":{
+    "fixed_acidity":"FLOAT",
+    "volatile_acidity":"FLOAT",
+    "citric_acid":"FLOAT",
+    "residual_sugar":"FLOAT",
+    "chlorides":"FLOAT",
+    "free_sulfur_dioxide":"FLOAT",
+    "total_sulfur_dioxide":"FLOAT",
+    "density":"FLOAT",
+    "pH":"FLOAT",
+    "sulphates":"FLOAT",
+    "alcohol":"FLOAT",
+    "quality":"VARCHAR(20)"
+  },
+  "fish":{
+    "Species":"VARCHAR(20)",
+    "Weight":"INTEGER",
+    "Length1":"FLOAT",
+    "Length2":"FLOAT",
+    "Length3":"FLOAT",
+    "Height":"FLOAT",
+    "Width":"FLOAT"
+  },
+  "iris_data":{
+    "sepal_length":"FLOAT",
+    "sepal_width":"FLOAT",
+    "petal_length":"FLOAT",
+    "petal_width":"FLOAT",
+    "species":"VARCHAR(20)"
+  },
+  "glass_types":{
+    "ri":"FLOAT",
+    "na":"FLOAT",
+    "mg":"FLOAT",
+    "ai":"FLOAT",
+    "si":"FLOAT",
+    "k":"FLOAT",
+    "ca":"FLOAT",
+    "ba":"FLOAT",
+    "fe":"FLOAT",
+    "gtype":"INTEGER"
+  },
+  "bmi":{
+    "gender":"VARCHAR(20)",
+    "height":"INTEGER",
+    "weight":"INTEGER",
+    "bmi":"INTEGER"
   }
-}
+
+}

teradataml/data/test_classification.csv

@@ -0,0 +1,101 @@
+col1,col2,col3,col4,label
+-7.156025619387396e-02,2.295539000122874e-01,2.1654344712218576e-01,6.527397921673574e-02,1
+-4.032571038523639e-01,2.0061840569850093e+00,2.027512477119932e+00,8.508919440196765e-01,1
+-1.1305820619922704e+00,-2.0295925141421645e-02,-7.102336334648424e-01,-1.440991082992062e+00,0
+1.8332468205821462e-01,-7.74610353732039e-01,-7.66054694735782e-01,-2.9366863291253276e-01,0
+-2.8692000017174224e-01,-7.169529842687833e-01,-9.865850877151031e-01,-8.48214734984639e-01,0
+-2.5604297516143286e+00,4.0223233672431147e-01,-1.1007419820939432e+00,-2.9595882598466674e+00,0
+4.223414406917685e-01,-2.039114403027563e+00,-2.053215806414584e+00,-8.491230457662061e-01,0
+-5.097927128625588e-01,4.926589443964751e-01,2.482067293662461e-01,-3.095907315896897e-01,1
+7.216694959200303e-01,-1.1215566442946217e+00,-8.318398647044646e-01,1.5074209659533433e-01,0
+-9.861325665504175e-01,1.7105310292848412e+00,1.3382818041204743e+00,-8.534109029742931e-02,1
+-7.231680381760497e-02,-7.736683335839201e-01,-9.203832529446819e-01,-6.157487035381035e-01,0
+4.559464978500706e-01,-4.578687619407589e-01,-2.4152710035941571e-01,2.6519962031057953e-01,1
+3.9390607557342605e-01,3.902473455403299e-01,6.815206771027396e-01,7.618043278846556e-01,1
+2.031968254396686e+00,8.403986546299471e-01,2.1871813975599217e+00,3.1348238328210307e+00,1
+4.5893100825733946e-02,-2.614033916761356e-01,-2.682252643663885e-01,-1.1926611814335958e-01,1
+3.734361597739779e-01,-1.0738263398394476e+00,-9.894492879424683e-01,-2.565077828985802e-01,0
+-1.2011443492922544e+00,1.1724106094128572e-01,-5.973218447748447e-01,-1.436834012027966e+00,0
+-1.308191714615154e+00,-4.3265955878063e-01,-1.2853288297891097e+00,-1.9447377443527114e+00,0
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