tomoto 0.1.0

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Files changed (420) hide show
  1. checksums.yaml +7 -0
  2. data/CHANGELOG.md +3 -0
  3. data/LICENSE.txt +22 -0
  4. data/README.md +123 -0
  5. data/ext/tomoto/ext.cpp +245 -0
  6. data/ext/tomoto/extconf.rb +28 -0
  7. data/lib/tomoto.rb +12 -0
  8. data/lib/tomoto/ct.rb +11 -0
  9. data/lib/tomoto/hdp.rb +11 -0
  10. data/lib/tomoto/lda.rb +67 -0
  11. data/lib/tomoto/version.rb +3 -0
  12. data/vendor/EigenRand/EigenRand/Core.h +1139 -0
  13. data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
  14. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
  15. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
  16. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
  17. data/vendor/EigenRand/EigenRand/EigenRand +19 -0
  18. data/vendor/EigenRand/EigenRand/Macro.h +24 -0
  19. data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
  20. data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
  21. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
  22. data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
  23. data/vendor/EigenRand/EigenRand/doc.h +220 -0
  24. data/vendor/EigenRand/LICENSE +21 -0
  25. data/vendor/EigenRand/README.md +288 -0
  26. data/vendor/eigen/COPYING.BSD +26 -0
  27. data/vendor/eigen/COPYING.GPL +674 -0
  28. data/vendor/eigen/COPYING.LGPL +502 -0
  29. data/vendor/eigen/COPYING.MINPACK +52 -0
  30. data/vendor/eigen/COPYING.MPL2 +373 -0
  31. data/vendor/eigen/COPYING.README +18 -0
  32. data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
  33. data/vendor/eigen/Eigen/Cholesky +46 -0
  34. data/vendor/eigen/Eigen/CholmodSupport +48 -0
  35. data/vendor/eigen/Eigen/Core +537 -0
  36. data/vendor/eigen/Eigen/Dense +7 -0
  37. data/vendor/eigen/Eigen/Eigen +2 -0
  38. data/vendor/eigen/Eigen/Eigenvalues +61 -0
  39. data/vendor/eigen/Eigen/Geometry +62 -0
  40. data/vendor/eigen/Eigen/Householder +30 -0
  41. data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
  42. data/vendor/eigen/Eigen/Jacobi +33 -0
  43. data/vendor/eigen/Eigen/LU +50 -0
  44. data/vendor/eigen/Eigen/MetisSupport +35 -0
  45. data/vendor/eigen/Eigen/OrderingMethods +73 -0
  46. data/vendor/eigen/Eigen/PaStiXSupport +48 -0
  47. data/vendor/eigen/Eigen/PardisoSupport +35 -0
  48. data/vendor/eigen/Eigen/QR +51 -0
  49. data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
  50. data/vendor/eigen/Eigen/SPQRSupport +34 -0
  51. data/vendor/eigen/Eigen/SVD +51 -0
  52. data/vendor/eigen/Eigen/Sparse +36 -0
  53. data/vendor/eigen/Eigen/SparseCholesky +45 -0
  54. data/vendor/eigen/Eigen/SparseCore +69 -0
  55. data/vendor/eigen/Eigen/SparseLU +46 -0
  56. data/vendor/eigen/Eigen/SparseQR +37 -0
  57. data/vendor/eigen/Eigen/StdDeque +27 -0
  58. data/vendor/eigen/Eigen/StdList +26 -0
  59. data/vendor/eigen/Eigen/StdVector +27 -0
  60. data/vendor/eigen/Eigen/SuperLUSupport +64 -0
  61. data/vendor/eigen/Eigen/UmfPackSupport +40 -0
  62. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
  63. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
  64. data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  65. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
  66. data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
  67. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
  68. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
  69. data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
  70. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
  71. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
  72. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
  73. data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
  74. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
  75. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
  76. data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
  77. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
  78. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
  79. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
  80. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
  81. data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  82. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
  84. data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
  85. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
  86. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
  87. data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
  88. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
  89. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
  90. data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
  91. data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
  92. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  93. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
  94. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
  95. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
  96. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
  97. data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
  98. data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
  99. data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
  100. data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
  101. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
  102. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
  103. data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
  104. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
  105. data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
  106. data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
  107. data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
  108. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
  109. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
  110. data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
  111. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
  112. data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
  113. data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
  114. data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
  115. data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
  116. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
  117. data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
  118. data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
  119. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
  120. data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  121. data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
  122. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
  123. data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
  124. data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
  125. data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
  126. data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
  127. data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
  128. data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
  129. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
  130. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
  131. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
  132. data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
  133. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
  134. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
  135. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
  136. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
  137. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
  138. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
  139. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
  140. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
  141. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
  142. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
  143. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
  145. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
  146. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
  148. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
  149. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
  153. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
  154. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
  156. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
  160. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
  161. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
  162. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
  163. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
  164. data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  165. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
  166. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
  167. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
  168. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
  169. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  170. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
  171. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
  172. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  173. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
  174. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
  175. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
  176. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
  177. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  178. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  179. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  180. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
  181. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
  182. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  183. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  184. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
  185. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
  186. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
  187. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
  188. data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
  189. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
  190. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  191. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
  192. data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
  193. data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
  194. data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
  195. data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
  196. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
  197. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
  198. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
  199. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  200. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
  201. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  202. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  203. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  204. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  205. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  206. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  207. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
  208. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
  209. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  210. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
  211. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  212. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
  213. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
  214. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
  215. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
  216. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
  217. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
  218. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
  219. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  220. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
  221. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
  222. data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
  223. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
  224. data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
  225. data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
  226. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
  227. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
  228. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
  229. data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
  230. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
  231. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  232. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
  233. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
  234. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
  235. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
  236. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
  237. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
  238. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
  239. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
  240. data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
  241. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
  242. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
  243. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
  244. data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  245. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
  246. data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  247. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
  248. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
  249. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
  250. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  251. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
  252. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
  253. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  254. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
  255. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
  256. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
  257. data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  258. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
  259. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
  260. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
  261. data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  262. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
  263. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  264. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
  265. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  266. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
  267. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
  268. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  269. data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  270. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
  271. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
  272. data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  273. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
  274. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
  275. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
  276. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
  277. data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  278. data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
  279. data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  280. data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
  281. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
  282. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
  283. data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  284. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
  285. data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
  295. data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  296. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
  297. data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  298. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  299. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  300. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  307. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  308. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  309. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
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  311. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  312. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  313. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
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  320. data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
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  322. data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
  323. data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
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  332. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  333. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
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  338. data/vendor/eigen/bench/tensors/README +21 -0
  339. data/vendor/eigen/blas/README.txt +6 -0
  340. data/vendor/eigen/demos/mandelbrot/README +10 -0
  341. data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
  342. data/vendor/eigen/demos/opengl/README +13 -0
  343. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
  344. data/vendor/eigen/unsupported/README.txt +50 -0
  345. data/vendor/tomotopy/LICENSE +21 -0
  346. data/vendor/tomotopy/README.kr.rst +375 -0
  347. data/vendor/tomotopy/README.rst +382 -0
  348. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
  349. data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
  350. data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
  351. data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
  352. data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
  353. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
  354. data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
  355. data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
  356. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
  357. data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
  358. data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
  359. data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
  360. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
  361. data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
  362. data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
  363. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
  364. data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
  365. data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
  366. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
  367. data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
  368. data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
  369. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
  370. data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
  371. data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
  372. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
  373. data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
  374. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
  375. data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
  376. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
  377. data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
  378. data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
  379. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
  380. data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
  381. data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
  382. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
  383. data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
  384. data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
  385. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
  386. data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
  387. data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
  388. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
  389. data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
  390. data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
  391. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
  392. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
  393. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +169 -0
  394. data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
  395. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
  396. data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
  397. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
  398. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
  399. data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
  400. data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
  401. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
  402. data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
  403. data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
  404. data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
  405. data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
  406. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
  407. data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
  408. data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
  409. data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
  410. data/vendor/tomotopy/src/Utils/exception.h +28 -0
  411. data/vendor/tomotopy/src/Utils/math.h +281 -0
  412. data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
  413. data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
  414. data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
  415. data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
  416. data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
  417. data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
  418. data/vendor/tomotopy/src/Utils/text.hpp +49 -0
  419. data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
  420. metadata +531 -0
@@ -0,0 +1,993 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008-2015 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ // Copyright (C) 2008-2009 Benoit Jacob <jacob.benoit.1@gmail.com>
6
+ // Copyright (C) 2009 Kenneth Riddile <kfriddile@yahoo.com>
7
+ // Copyright (C) 2010 Hauke Heibel <hauke.heibel@gmail.com>
8
+ // Copyright (C) 2010 Thomas Capricelli <orzel@freehackers.org>
9
+ // Copyright (C) 2013 Pavel Holoborodko <pavel@holoborodko.com>
10
+ //
11
+ // This Source Code Form is subject to the terms of the Mozilla
12
+ // Public License v. 2.0. If a copy of the MPL was not distributed
13
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
14
+
15
+
16
+ /*****************************************************************************
17
+ *** Platform checks for aligned malloc functions ***
18
+ *****************************************************************************/
19
+
20
+ #ifndef EIGEN_MEMORY_H
21
+ #define EIGEN_MEMORY_H
22
+
23
+ #ifndef EIGEN_MALLOC_ALREADY_ALIGNED
24
+
25
+ // Try to determine automatically if malloc is already aligned.
26
+
27
+ // On 64-bit systems, glibc's malloc returns 16-byte-aligned pointers, see:
28
+ // http://www.gnu.org/s/libc/manual/html_node/Aligned-Memory-Blocks.html
29
+ // This is true at least since glibc 2.8.
30
+ // This leaves the question how to detect 64-bit. According to this document,
31
+ // http://gcc.fyxm.net/summit/2003/Porting%20to%2064%20bit.pdf
32
+ // page 114, "[The] LP64 model [...] is used by all 64-bit UNIX ports" so it's indeed
33
+ // quite safe, at least within the context of glibc, to equate 64-bit with LP64.
34
+ #if defined(__GLIBC__) && ((__GLIBC__>=2 && __GLIBC_MINOR__ >= 8) || __GLIBC__>2) \
35
+ && defined(__LP64__) && ! defined( __SANITIZE_ADDRESS__ ) && (EIGEN_DEFAULT_ALIGN_BYTES == 16)
36
+ #define EIGEN_GLIBC_MALLOC_ALREADY_ALIGNED 1
37
+ #else
38
+ #define EIGEN_GLIBC_MALLOC_ALREADY_ALIGNED 0
39
+ #endif
40
+
41
+ // FreeBSD 6 seems to have 16-byte aligned malloc
42
+ // See http://svn.freebsd.org/viewvc/base/stable/6/lib/libc/stdlib/malloc.c?view=markup
43
+ // FreeBSD 7 seems to have 16-byte aligned malloc except on ARM and MIPS architectures
44
+ // See http://svn.freebsd.org/viewvc/base/stable/7/lib/libc/stdlib/malloc.c?view=markup
45
+ #if defined(__FreeBSD__) && !(EIGEN_ARCH_ARM || EIGEN_ARCH_MIPS) && (EIGEN_DEFAULT_ALIGN_BYTES == 16)
46
+ #define EIGEN_FREEBSD_MALLOC_ALREADY_ALIGNED 1
47
+ #else
48
+ #define EIGEN_FREEBSD_MALLOC_ALREADY_ALIGNED 0
49
+ #endif
50
+
51
+ #if (EIGEN_OS_MAC && (EIGEN_DEFAULT_ALIGN_BYTES == 16)) \
52
+ || (EIGEN_OS_WIN64 && (EIGEN_DEFAULT_ALIGN_BYTES == 16)) \
53
+ || EIGEN_GLIBC_MALLOC_ALREADY_ALIGNED \
54
+ || EIGEN_FREEBSD_MALLOC_ALREADY_ALIGNED
55
+ #define EIGEN_MALLOC_ALREADY_ALIGNED 1
56
+ #else
57
+ #define EIGEN_MALLOC_ALREADY_ALIGNED 0
58
+ #endif
59
+
60
+ #endif
61
+
62
+ namespace Eigen {
63
+
64
+ namespace internal {
65
+
66
+ EIGEN_DEVICE_FUNC
67
+ inline void throw_std_bad_alloc()
68
+ {
69
+ #ifdef EIGEN_EXCEPTIONS
70
+ throw std::bad_alloc();
71
+ #else
72
+ std::size_t huge = static_cast<std::size_t>(-1);
73
+ ::operator new(huge);
74
+ #endif
75
+ }
76
+
77
+ /*****************************************************************************
78
+ *** Implementation of handmade aligned functions ***
79
+ *****************************************************************************/
80
+
81
+ /* ----- Hand made implementations of aligned malloc/free and realloc ----- */
82
+
83
+ /** \internal Like malloc, but the returned pointer is guaranteed to be 16-byte aligned.
84
+ * Fast, but wastes 16 additional bytes of memory. Does not throw any exception.
85
+ */
86
+ inline void* handmade_aligned_malloc(std::size_t size)
87
+ {
88
+ void *original = std::malloc(size+EIGEN_DEFAULT_ALIGN_BYTES);
89
+ if (original == 0) return 0;
90
+ void *aligned = reinterpret_cast<void*>((reinterpret_cast<std::size_t>(original) & ~(std::size_t(EIGEN_DEFAULT_ALIGN_BYTES-1))) + EIGEN_DEFAULT_ALIGN_BYTES);
91
+ *(reinterpret_cast<void**>(aligned) - 1) = original;
92
+ return aligned;
93
+ }
94
+
95
+ /** \internal Frees memory allocated with handmade_aligned_malloc */
96
+ inline void handmade_aligned_free(void *ptr)
97
+ {
98
+ if (ptr) std::free(*(reinterpret_cast<void**>(ptr) - 1));
99
+ }
100
+
101
+ /** \internal
102
+ * \brief Reallocates aligned memory.
103
+ * Since we know that our handmade version is based on std::malloc
104
+ * we can use std::realloc to implement efficient reallocation.
105
+ */
106
+ inline void* handmade_aligned_realloc(void* ptr, std::size_t size, std::size_t = 0)
107
+ {
108
+ if (ptr == 0) return handmade_aligned_malloc(size);
109
+ void *original = *(reinterpret_cast<void**>(ptr) - 1);
110
+ std::ptrdiff_t previous_offset = static_cast<char *>(ptr)-static_cast<char *>(original);
111
+ original = std::realloc(original,size+EIGEN_DEFAULT_ALIGN_BYTES);
112
+ if (original == 0) return 0;
113
+ void *aligned = reinterpret_cast<void*>((reinterpret_cast<std::size_t>(original) & ~(std::size_t(EIGEN_DEFAULT_ALIGN_BYTES-1))) + EIGEN_DEFAULT_ALIGN_BYTES);
114
+ void *previous_aligned = static_cast<char *>(original)+previous_offset;
115
+ if(aligned!=previous_aligned)
116
+ std::memmove(aligned, previous_aligned, size);
117
+
118
+ *(reinterpret_cast<void**>(aligned) - 1) = original;
119
+ return aligned;
120
+ }
121
+
122
+ /*****************************************************************************
123
+ *** Implementation of portable aligned versions of malloc/free/realloc ***
124
+ *****************************************************************************/
125
+
126
+ #ifdef EIGEN_NO_MALLOC
127
+ EIGEN_DEVICE_FUNC inline void check_that_malloc_is_allowed()
128
+ {
129
+ eigen_assert(false && "heap allocation is forbidden (EIGEN_NO_MALLOC is defined)");
130
+ }
131
+ #elif defined EIGEN_RUNTIME_NO_MALLOC
132
+ EIGEN_DEVICE_FUNC inline bool is_malloc_allowed_impl(bool update, bool new_value = false)
133
+ {
134
+ static bool value = true;
135
+ if (update == 1)
136
+ value = new_value;
137
+ return value;
138
+ }
139
+ EIGEN_DEVICE_FUNC inline bool is_malloc_allowed() { return is_malloc_allowed_impl(false); }
140
+ EIGEN_DEVICE_FUNC inline bool set_is_malloc_allowed(bool new_value) { return is_malloc_allowed_impl(true, new_value); }
141
+ EIGEN_DEVICE_FUNC inline void check_that_malloc_is_allowed()
142
+ {
143
+ eigen_assert(is_malloc_allowed() && "heap allocation is forbidden (EIGEN_RUNTIME_NO_MALLOC is defined and g_is_malloc_allowed is false)");
144
+ }
145
+ #else
146
+ EIGEN_DEVICE_FUNC inline void check_that_malloc_is_allowed()
147
+ {}
148
+ #endif
149
+
150
+ /** \internal Allocates \a size bytes. The returned pointer is guaranteed to have 16 or 32 bytes alignment depending on the requirements.
151
+ * On allocation error, the returned pointer is null, and std::bad_alloc is thrown.
152
+ */
153
+ EIGEN_DEVICE_FUNC inline void* aligned_malloc(std::size_t size)
154
+ {
155
+ check_that_malloc_is_allowed();
156
+
157
+ void *result;
158
+ #if (EIGEN_DEFAULT_ALIGN_BYTES==0) || EIGEN_MALLOC_ALREADY_ALIGNED
159
+ result = std::malloc(size);
160
+ #if EIGEN_DEFAULT_ALIGN_BYTES==16
161
+ eigen_assert((size<16 || (std::size_t(result)%16)==0) && "System's malloc returned an unaligned pointer. Compile with EIGEN_MALLOC_ALREADY_ALIGNED=0 to fallback to handmade alignd memory allocator.");
162
+ #endif
163
+ #else
164
+ result = handmade_aligned_malloc(size);
165
+ #endif
166
+
167
+ if(!result && size)
168
+ throw_std_bad_alloc();
169
+
170
+ return result;
171
+ }
172
+
173
+ /** \internal Frees memory allocated with aligned_malloc. */
174
+ EIGEN_DEVICE_FUNC inline void aligned_free(void *ptr)
175
+ {
176
+ #if (EIGEN_DEFAULT_ALIGN_BYTES==0) || EIGEN_MALLOC_ALREADY_ALIGNED
177
+ std::free(ptr);
178
+ #else
179
+ handmade_aligned_free(ptr);
180
+ #endif
181
+ }
182
+
183
+ /**
184
+ * \internal
185
+ * \brief Reallocates an aligned block of memory.
186
+ * \throws std::bad_alloc on allocation failure
187
+ */
188
+ inline void* aligned_realloc(void *ptr, std::size_t new_size, std::size_t old_size)
189
+ {
190
+ EIGEN_UNUSED_VARIABLE(old_size);
191
+
192
+ void *result;
193
+ #if (EIGEN_DEFAULT_ALIGN_BYTES==0) || EIGEN_MALLOC_ALREADY_ALIGNED
194
+ result = std::realloc(ptr,new_size);
195
+ #else
196
+ result = handmade_aligned_realloc(ptr,new_size,old_size);
197
+ #endif
198
+
199
+ if (!result && new_size)
200
+ throw_std_bad_alloc();
201
+
202
+ return result;
203
+ }
204
+
205
+ /*****************************************************************************
206
+ *** Implementation of conditionally aligned functions ***
207
+ *****************************************************************************/
208
+
209
+ /** \internal Allocates \a size bytes. If Align is true, then the returned ptr is 16-byte-aligned.
210
+ * On allocation error, the returned pointer is null, and a std::bad_alloc is thrown.
211
+ */
212
+ template<bool Align> EIGEN_DEVICE_FUNC inline void* conditional_aligned_malloc(std::size_t size)
213
+ {
214
+ return aligned_malloc(size);
215
+ }
216
+
217
+ template<> EIGEN_DEVICE_FUNC inline void* conditional_aligned_malloc<false>(std::size_t size)
218
+ {
219
+ check_that_malloc_is_allowed();
220
+
221
+ void *result = std::malloc(size);
222
+ if(!result && size)
223
+ throw_std_bad_alloc();
224
+ return result;
225
+ }
226
+
227
+ /** \internal Frees memory allocated with conditional_aligned_malloc */
228
+ template<bool Align> EIGEN_DEVICE_FUNC inline void conditional_aligned_free(void *ptr)
229
+ {
230
+ aligned_free(ptr);
231
+ }
232
+
233
+ template<> EIGEN_DEVICE_FUNC inline void conditional_aligned_free<false>(void *ptr)
234
+ {
235
+ std::free(ptr);
236
+ }
237
+
238
+ template<bool Align> inline void* conditional_aligned_realloc(void* ptr, std::size_t new_size, std::size_t old_size)
239
+ {
240
+ return aligned_realloc(ptr, new_size, old_size);
241
+ }
242
+
243
+ template<> inline void* conditional_aligned_realloc<false>(void* ptr, std::size_t new_size, std::size_t)
244
+ {
245
+ return std::realloc(ptr, new_size);
246
+ }
247
+
248
+ /*****************************************************************************
249
+ *** Construction/destruction of array elements ***
250
+ *****************************************************************************/
251
+
252
+ /** \internal Destructs the elements of an array.
253
+ * The \a size parameters tells on how many objects to call the destructor of T.
254
+ */
255
+ template<typename T> EIGEN_DEVICE_FUNC inline void destruct_elements_of_array(T *ptr, std::size_t size)
256
+ {
257
+ // always destruct an array starting from the end.
258
+ if(ptr)
259
+ while(size) ptr[--size].~T();
260
+ }
261
+
262
+ /** \internal Constructs the elements of an array.
263
+ * The \a size parameter tells on how many objects to call the constructor of T.
264
+ */
265
+ template<typename T> EIGEN_DEVICE_FUNC inline T* construct_elements_of_array(T *ptr, std::size_t size)
266
+ {
267
+ std::size_t i;
268
+ EIGEN_TRY
269
+ {
270
+ for (i = 0; i < size; ++i) ::new (ptr + i) T;
271
+ return ptr;
272
+ }
273
+ EIGEN_CATCH(...)
274
+ {
275
+ destruct_elements_of_array(ptr, i);
276
+ EIGEN_THROW;
277
+ }
278
+ return NULL;
279
+ }
280
+
281
+ /*****************************************************************************
282
+ *** Implementation of aligned new/delete-like functions ***
283
+ *****************************************************************************/
284
+
285
+ template<typename T>
286
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void check_size_for_overflow(std::size_t size)
287
+ {
288
+ if(size > std::size_t(-1) / sizeof(T))
289
+ throw_std_bad_alloc();
290
+ }
291
+
292
+ /** \internal Allocates \a size objects of type T. The returned pointer is guaranteed to have 16 bytes alignment.
293
+ * On allocation error, the returned pointer is undefined, but a std::bad_alloc is thrown.
294
+ * The default constructor of T is called.
295
+ */
296
+ template<typename T> EIGEN_DEVICE_FUNC inline T* aligned_new(std::size_t size)
297
+ {
298
+ check_size_for_overflow<T>(size);
299
+ T *result = reinterpret_cast<T*>(aligned_malloc(sizeof(T)*size));
300
+ EIGEN_TRY
301
+ {
302
+ return construct_elements_of_array(result, size);
303
+ }
304
+ EIGEN_CATCH(...)
305
+ {
306
+ aligned_free(result);
307
+ EIGEN_THROW;
308
+ }
309
+ return result;
310
+ }
311
+
312
+ template<typename T, bool Align> EIGEN_DEVICE_FUNC inline T* conditional_aligned_new(std::size_t size)
313
+ {
314
+ check_size_for_overflow<T>(size);
315
+ T *result = reinterpret_cast<T*>(conditional_aligned_malloc<Align>(sizeof(T)*size));
316
+ EIGEN_TRY
317
+ {
318
+ return construct_elements_of_array(result, size);
319
+ }
320
+ EIGEN_CATCH(...)
321
+ {
322
+ conditional_aligned_free<Align>(result);
323
+ EIGEN_THROW;
324
+ }
325
+ return result;
326
+ }
327
+
328
+ /** \internal Deletes objects constructed with aligned_new
329
+ * The \a size parameters tells on how many objects to call the destructor of T.
330
+ */
331
+ template<typename T> EIGEN_DEVICE_FUNC inline void aligned_delete(T *ptr, std::size_t size)
332
+ {
333
+ destruct_elements_of_array<T>(ptr, size);
334
+ aligned_free(ptr);
335
+ }
336
+
337
+ /** \internal Deletes objects constructed with conditional_aligned_new
338
+ * The \a size parameters tells on how many objects to call the destructor of T.
339
+ */
340
+ template<typename T, bool Align> EIGEN_DEVICE_FUNC inline void conditional_aligned_delete(T *ptr, std::size_t size)
341
+ {
342
+ destruct_elements_of_array<T>(ptr, size);
343
+ conditional_aligned_free<Align>(ptr);
344
+ }
345
+
346
+ template<typename T, bool Align> EIGEN_DEVICE_FUNC inline T* conditional_aligned_realloc_new(T* pts, std::size_t new_size, std::size_t old_size)
347
+ {
348
+ check_size_for_overflow<T>(new_size);
349
+ check_size_for_overflow<T>(old_size);
350
+ if(new_size < old_size)
351
+ destruct_elements_of_array(pts+new_size, old_size-new_size);
352
+ T *result = reinterpret_cast<T*>(conditional_aligned_realloc<Align>(reinterpret_cast<void*>(pts), sizeof(T)*new_size, sizeof(T)*old_size));
353
+ if(new_size > old_size)
354
+ {
355
+ EIGEN_TRY
356
+ {
357
+ construct_elements_of_array(result+old_size, new_size-old_size);
358
+ }
359
+ EIGEN_CATCH(...)
360
+ {
361
+ conditional_aligned_free<Align>(result);
362
+ EIGEN_THROW;
363
+ }
364
+ }
365
+ return result;
366
+ }
367
+
368
+
369
+ template<typename T, bool Align> EIGEN_DEVICE_FUNC inline T* conditional_aligned_new_auto(std::size_t size)
370
+ {
371
+ if(size==0)
372
+ return 0; // short-cut. Also fixes Bug 884
373
+ check_size_for_overflow<T>(size);
374
+ T *result = reinterpret_cast<T*>(conditional_aligned_malloc<Align>(sizeof(T)*size));
375
+ if(NumTraits<T>::RequireInitialization)
376
+ {
377
+ EIGEN_TRY
378
+ {
379
+ construct_elements_of_array(result, size);
380
+ }
381
+ EIGEN_CATCH(...)
382
+ {
383
+ conditional_aligned_free<Align>(result);
384
+ EIGEN_THROW;
385
+ }
386
+ }
387
+ return result;
388
+ }
389
+
390
+ template<typename T, bool Align> inline T* conditional_aligned_realloc_new_auto(T* pts, std::size_t new_size, std::size_t old_size)
391
+ {
392
+ check_size_for_overflow<T>(new_size);
393
+ check_size_for_overflow<T>(old_size);
394
+ if(NumTraits<T>::RequireInitialization && (new_size < old_size))
395
+ destruct_elements_of_array(pts+new_size, old_size-new_size);
396
+ T *result = reinterpret_cast<T*>(conditional_aligned_realloc<Align>(reinterpret_cast<void*>(pts), sizeof(T)*new_size, sizeof(T)*old_size));
397
+ if(NumTraits<T>::RequireInitialization && (new_size > old_size))
398
+ {
399
+ EIGEN_TRY
400
+ {
401
+ construct_elements_of_array(result+old_size, new_size-old_size);
402
+ }
403
+ EIGEN_CATCH(...)
404
+ {
405
+ conditional_aligned_free<Align>(result);
406
+ EIGEN_THROW;
407
+ }
408
+ }
409
+ return result;
410
+ }
411
+
412
+ template<typename T, bool Align> EIGEN_DEVICE_FUNC inline void conditional_aligned_delete_auto(T *ptr, std::size_t size)
413
+ {
414
+ if(NumTraits<T>::RequireInitialization)
415
+ destruct_elements_of_array<T>(ptr, size);
416
+ conditional_aligned_free<Align>(ptr);
417
+ }
418
+
419
+ /****************************************************************************/
420
+
421
+ /** \internal Returns the index of the first element of the array that is well aligned with respect to the requested \a Alignment.
422
+ *
423
+ * \tparam Alignment requested alignment in Bytes.
424
+ * \param array the address of the start of the array
425
+ * \param size the size of the array
426
+ *
427
+ * \note If no element of the array is well aligned or the requested alignment is not a multiple of a scalar,
428
+ * the size of the array is returned. For example with SSE, the requested alignment is typically 16-bytes. If
429
+ * packet size for the given scalar type is 1, then everything is considered well-aligned.
430
+ *
431
+ * \note Otherwise, if the Alignment is larger that the scalar size, we rely on the assumptions that sizeof(Scalar) is a
432
+ * power of 2. On the other hand, we do not assume that the array address is a multiple of sizeof(Scalar), as that fails for
433
+ * example with Scalar=double on certain 32-bit platforms, see bug #79.
434
+ *
435
+ * There is also the variant first_aligned(const MatrixBase&) defined in DenseCoeffsBase.h.
436
+ * \sa first_default_aligned()
437
+ */
438
+ template<int Alignment, typename Scalar, typename Index>
439
+ EIGEN_DEVICE_FUNC inline Index first_aligned(const Scalar* array, Index size)
440
+ {
441
+ const Index ScalarSize = sizeof(Scalar);
442
+ const Index AlignmentSize = Alignment / ScalarSize;
443
+ const Index AlignmentMask = AlignmentSize-1;
444
+
445
+ if(AlignmentSize<=1)
446
+ {
447
+ // Either the requested alignment if smaller than a scalar, or it exactly match a 1 scalar
448
+ // so that all elements of the array have the same alignment.
449
+ return 0;
450
+ }
451
+ else if( (UIntPtr(array) & (sizeof(Scalar)-1)) || (Alignment%ScalarSize)!=0)
452
+ {
453
+ // The array is not aligned to the size of a single scalar, or the requested alignment is not a multiple of the scalar size.
454
+ // Consequently, no element of the array is well aligned.
455
+ return size;
456
+ }
457
+ else
458
+ {
459
+ Index first = (AlignmentSize - (Index((UIntPtr(array)/sizeof(Scalar))) & AlignmentMask)) & AlignmentMask;
460
+ return (first < size) ? first : size;
461
+ }
462
+ }
463
+
464
+ /** \internal Returns the index of the first element of the array that is well aligned with respect the largest packet requirement.
465
+ * \sa first_aligned(Scalar*,Index) and first_default_aligned(DenseBase<Derived>) */
466
+ template<typename Scalar, typename Index>
467
+ EIGEN_DEVICE_FUNC inline Index first_default_aligned(const Scalar* array, Index size)
468
+ {
469
+ typedef typename packet_traits<Scalar>::type DefaultPacketType;
470
+ return first_aligned<unpacket_traits<DefaultPacketType>::alignment>(array, size);
471
+ }
472
+
473
+ /** \internal Returns the smallest integer multiple of \a base and greater or equal to \a size
474
+ */
475
+ template<typename Index>
476
+ inline Index first_multiple(Index size, Index base)
477
+ {
478
+ return ((size+base-1)/base)*base;
479
+ }
480
+
481
+ // std::copy is much slower than memcpy, so let's introduce a smart_copy which
482
+ // use memcpy on trivial types, i.e., on types that does not require an initialization ctor.
483
+ template<typename T, bool UseMemcpy> struct smart_copy_helper;
484
+
485
+ template<typename T> EIGEN_DEVICE_FUNC void smart_copy(const T* start, const T* end, T* target)
486
+ {
487
+ smart_copy_helper<T,!NumTraits<T>::RequireInitialization>::run(start, end, target);
488
+ }
489
+
490
+ template<typename T> struct smart_copy_helper<T,true> {
491
+ EIGEN_DEVICE_FUNC static inline void run(const T* start, const T* end, T* target)
492
+ {
493
+ IntPtr size = IntPtr(end)-IntPtr(start);
494
+ if(size==0) return;
495
+ eigen_internal_assert(start!=0 && end!=0 && target!=0);
496
+ std::memcpy(target, start, size);
497
+ }
498
+ };
499
+
500
+ template<typename T> struct smart_copy_helper<T,false> {
501
+ EIGEN_DEVICE_FUNC static inline void run(const T* start, const T* end, T* target)
502
+ { std::copy(start, end, target); }
503
+ };
504
+
505
+ // intelligent memmove. falls back to std::memmove for POD types, uses std::copy otherwise.
506
+ template<typename T, bool UseMemmove> struct smart_memmove_helper;
507
+
508
+ template<typename T> void smart_memmove(const T* start, const T* end, T* target)
509
+ {
510
+ smart_memmove_helper<T,!NumTraits<T>::RequireInitialization>::run(start, end, target);
511
+ }
512
+
513
+ template<typename T> struct smart_memmove_helper<T,true> {
514
+ static inline void run(const T* start, const T* end, T* target)
515
+ {
516
+ IntPtr size = IntPtr(end)-IntPtr(start);
517
+ if(size==0) return;
518
+ eigen_internal_assert(start!=0 && end!=0 && target!=0);
519
+ std::memmove(target, start, size);
520
+ }
521
+ };
522
+
523
+ template<typename T> struct smart_memmove_helper<T,false> {
524
+ static inline void run(const T* start, const T* end, T* target)
525
+ {
526
+ if (UIntPtr(target) < UIntPtr(start))
527
+ {
528
+ std::copy(start, end, target);
529
+ }
530
+ else
531
+ {
532
+ std::ptrdiff_t count = (std::ptrdiff_t(end)-std::ptrdiff_t(start)) / sizeof(T);
533
+ std::copy_backward(start, end, target + count);
534
+ }
535
+ }
536
+ };
537
+
538
+
539
+ /*****************************************************************************
540
+ *** Implementation of runtime stack allocation (falling back to malloc) ***
541
+ *****************************************************************************/
542
+
543
+ // you can overwrite Eigen's default behavior regarding alloca by defining EIGEN_ALLOCA
544
+ // to the appropriate stack allocation function
545
+ #ifndef EIGEN_ALLOCA
546
+ #if EIGEN_OS_LINUX || EIGEN_OS_MAC || (defined alloca)
547
+ #define EIGEN_ALLOCA alloca
548
+ #elif EIGEN_COMP_MSVC
549
+ #define EIGEN_ALLOCA _alloca
550
+ #endif
551
+ #endif
552
+
553
+ // This helper class construct the allocated memory, and takes care of destructing and freeing the handled data
554
+ // at destruction time. In practice this helper class is mainly useful to avoid memory leak in case of exceptions.
555
+ template<typename T> class aligned_stack_memory_handler : noncopyable
556
+ {
557
+ public:
558
+ /* Creates a stack_memory_handler responsible for the buffer \a ptr of size \a size.
559
+ * Note that \a ptr can be 0 regardless of the other parameters.
560
+ * This constructor takes care of constructing/initializing the elements of the buffer if required by the scalar type T (see NumTraits<T>::RequireInitialization).
561
+ * In this case, the buffer elements will also be destructed when this handler will be destructed.
562
+ * Finally, if \a dealloc is true, then the pointer \a ptr is freed.
563
+ **/
564
+ aligned_stack_memory_handler(T* ptr, std::size_t size, bool dealloc)
565
+ : m_ptr(ptr), m_size(size), m_deallocate(dealloc)
566
+ {
567
+ if(NumTraits<T>::RequireInitialization && m_ptr)
568
+ Eigen::internal::construct_elements_of_array(m_ptr, size);
569
+ }
570
+ ~aligned_stack_memory_handler()
571
+ {
572
+ if(NumTraits<T>::RequireInitialization && m_ptr)
573
+ Eigen::internal::destruct_elements_of_array<T>(m_ptr, m_size);
574
+ if(m_deallocate)
575
+ Eigen::internal::aligned_free(m_ptr);
576
+ }
577
+ protected:
578
+ T* m_ptr;
579
+ std::size_t m_size;
580
+ bool m_deallocate;
581
+ };
582
+
583
+ template<typename T> class scoped_array : noncopyable
584
+ {
585
+ T* m_ptr;
586
+ public:
587
+ explicit scoped_array(std::ptrdiff_t size)
588
+ {
589
+ m_ptr = new T[size];
590
+ }
591
+ ~scoped_array()
592
+ {
593
+ delete[] m_ptr;
594
+ }
595
+ T& operator[](std::ptrdiff_t i) { return m_ptr[i]; }
596
+ const T& operator[](std::ptrdiff_t i) const { return m_ptr[i]; }
597
+ T* &ptr() { return m_ptr; }
598
+ const T* ptr() const { return m_ptr; }
599
+ operator const T*() const { return m_ptr; }
600
+ };
601
+
602
+ template<typename T> void swap(scoped_array<T> &a,scoped_array<T> &b)
603
+ {
604
+ std::swap(a.ptr(),b.ptr());
605
+ }
606
+
607
+ } // end namespace internal
608
+
609
+ /** \internal
610
+ * Declares, allocates and construct an aligned buffer named NAME of SIZE elements of type TYPE on the stack
611
+ * if SIZE is smaller than EIGEN_STACK_ALLOCATION_LIMIT, and if stack allocation is supported by the platform
612
+ * (currently, this is Linux and Visual Studio only). Otherwise the memory is allocated on the heap.
613
+ * The allocated buffer is automatically deleted when exiting the scope of this declaration.
614
+ * If BUFFER is non null, then the declared variable is simply an alias for BUFFER, and no allocation/deletion occurs.
615
+ * Here is an example:
616
+ * \code
617
+ * {
618
+ * ei_declare_aligned_stack_constructed_variable(float,data,size,0);
619
+ * // use data[0] to data[size-1]
620
+ * }
621
+ * \endcode
622
+ * The underlying stack allocation function can controlled with the EIGEN_ALLOCA preprocessor token.
623
+ */
624
+ #ifdef EIGEN_ALLOCA
625
+
626
+ #if EIGEN_DEFAULT_ALIGN_BYTES>0
627
+ // We always manually re-align the result of EIGEN_ALLOCA.
628
+ // If alloca is already aligned, the compiler should be smart enough to optimize away the re-alignment.
629
+ #define EIGEN_ALIGNED_ALLOCA(SIZE) reinterpret_cast<void*>((internal::UIntPtr(EIGEN_ALLOCA(SIZE+EIGEN_DEFAULT_ALIGN_BYTES-1)) + EIGEN_DEFAULT_ALIGN_BYTES-1) & ~(std::size_t(EIGEN_DEFAULT_ALIGN_BYTES-1)))
630
+ #else
631
+ #define EIGEN_ALIGNED_ALLOCA(SIZE) EIGEN_ALLOCA(SIZE)
632
+ #endif
633
+
634
+ #define ei_declare_aligned_stack_constructed_variable(TYPE,NAME,SIZE,BUFFER) \
635
+ Eigen::internal::check_size_for_overflow<TYPE>(SIZE); \
636
+ TYPE* NAME = (BUFFER)!=0 ? (BUFFER) \
637
+ : reinterpret_cast<TYPE*>( \
638
+ (sizeof(TYPE)*SIZE<=EIGEN_STACK_ALLOCATION_LIMIT) ? EIGEN_ALIGNED_ALLOCA(sizeof(TYPE)*SIZE) \
639
+ : Eigen::internal::aligned_malloc(sizeof(TYPE)*SIZE) ); \
640
+ Eigen::internal::aligned_stack_memory_handler<TYPE> EIGEN_CAT(NAME,_stack_memory_destructor)((BUFFER)==0 ? NAME : 0,SIZE,sizeof(TYPE)*SIZE>EIGEN_STACK_ALLOCATION_LIMIT)
641
+
642
+ #else
643
+
644
+ #define ei_declare_aligned_stack_constructed_variable(TYPE,NAME,SIZE,BUFFER) \
645
+ Eigen::internal::check_size_for_overflow<TYPE>(SIZE); \
646
+ TYPE* NAME = (BUFFER)!=0 ? BUFFER : reinterpret_cast<TYPE*>(Eigen::internal::aligned_malloc(sizeof(TYPE)*SIZE)); \
647
+ Eigen::internal::aligned_stack_memory_handler<TYPE> EIGEN_CAT(NAME,_stack_memory_destructor)((BUFFER)==0 ? NAME : 0,SIZE,true)
648
+
649
+ #endif
650
+
651
+
652
+ /*****************************************************************************
653
+ *** Implementation of EIGEN_MAKE_ALIGNED_OPERATOR_NEW [_IF] ***
654
+ *****************************************************************************/
655
+
656
+ #if EIGEN_MAX_ALIGN_BYTES!=0
657
+ #define EIGEN_MAKE_ALIGNED_OPERATOR_NEW_NOTHROW(NeedsToAlign) \
658
+ void* operator new(std::size_t size, const std::nothrow_t&) EIGEN_NO_THROW { \
659
+ EIGEN_TRY { return Eigen::internal::conditional_aligned_malloc<NeedsToAlign>(size); } \
660
+ EIGEN_CATCH (...) { return 0; } \
661
+ }
662
+ #define EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF(NeedsToAlign) \
663
+ void *operator new(std::size_t size) { \
664
+ return Eigen::internal::conditional_aligned_malloc<NeedsToAlign>(size); \
665
+ } \
666
+ void *operator new[](std::size_t size) { \
667
+ return Eigen::internal::conditional_aligned_malloc<NeedsToAlign>(size); \
668
+ } \
669
+ void operator delete(void * ptr) EIGEN_NO_THROW { Eigen::internal::conditional_aligned_free<NeedsToAlign>(ptr); } \
670
+ void operator delete[](void * ptr) EIGEN_NO_THROW { Eigen::internal::conditional_aligned_free<NeedsToAlign>(ptr); } \
671
+ void operator delete(void * ptr, std::size_t /* sz */) EIGEN_NO_THROW { Eigen::internal::conditional_aligned_free<NeedsToAlign>(ptr); } \
672
+ void operator delete[](void * ptr, std::size_t /* sz */) EIGEN_NO_THROW { Eigen::internal::conditional_aligned_free<NeedsToAlign>(ptr); } \
673
+ /* in-place new and delete. since (at least afaik) there is no actual */ \
674
+ /* memory allocated we can safely let the default implementation handle */ \
675
+ /* this particular case. */ \
676
+ static void *operator new(std::size_t size, void *ptr) { return ::operator new(size,ptr); } \
677
+ static void *operator new[](std::size_t size, void* ptr) { return ::operator new[](size,ptr); } \
678
+ void operator delete(void * memory, void *ptr) EIGEN_NO_THROW { return ::operator delete(memory,ptr); } \
679
+ void operator delete[](void * memory, void *ptr) EIGEN_NO_THROW { return ::operator delete[](memory,ptr); } \
680
+ /* nothrow-new (returns zero instead of std::bad_alloc) */ \
681
+ EIGEN_MAKE_ALIGNED_OPERATOR_NEW_NOTHROW(NeedsToAlign) \
682
+ void operator delete(void *ptr, const std::nothrow_t&) EIGEN_NO_THROW { \
683
+ Eigen::internal::conditional_aligned_free<NeedsToAlign>(ptr); \
684
+ } \
685
+ typedef void eigen_aligned_operator_new_marker_type;
686
+ #else
687
+ #define EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF(NeedsToAlign)
688
+ #endif
689
+
690
+ #define EIGEN_MAKE_ALIGNED_OPERATOR_NEW EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF(true)
691
+ #define EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF_VECTORIZABLE_FIXED_SIZE(Scalar,Size) \
692
+ EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF(bool(((Size)!=Eigen::Dynamic) && ((sizeof(Scalar)*(Size))%EIGEN_MAX_ALIGN_BYTES==0)))
693
+
694
+ /****************************************************************************/
695
+
696
+ /** \class aligned_allocator
697
+ * \ingroup Core_Module
698
+ *
699
+ * \brief STL compatible allocator to use with types requiring a non standrad alignment.
700
+ *
701
+ * The memory is aligned as for dynamically aligned matrix/array types such as MatrixXd.
702
+ * By default, it will thus provide at least 16 bytes alignment and more in following cases:
703
+ * - 32 bytes alignment if AVX is enabled.
704
+ * - 64 bytes alignment if AVX512 is enabled.
705
+ *
706
+ * This can be controled using the \c EIGEN_MAX_ALIGN_BYTES macro as documented
707
+ * \link TopicPreprocessorDirectivesPerformance there \endlink.
708
+ *
709
+ * Example:
710
+ * \code
711
+ * // Matrix4f requires 16 bytes alignment:
712
+ * std::map< int, Matrix4f, std::less<int>,
713
+ * aligned_allocator<std::pair<const int, Matrix4f> > > my_map_mat4;
714
+ * // Vector3f does not require 16 bytes alignment, no need to use Eigen's allocator:
715
+ * std::map< int, Vector3f > my_map_vec3;
716
+ * \endcode
717
+ *
718
+ * \sa \blank \ref TopicStlContainers.
719
+ */
720
+ template<class T>
721
+ class aligned_allocator : public std::allocator<T>
722
+ {
723
+ public:
724
+ typedef std::size_t size_type;
725
+ typedef std::ptrdiff_t difference_type;
726
+ typedef T* pointer;
727
+ typedef const T* const_pointer;
728
+ typedef T& reference;
729
+ typedef const T& const_reference;
730
+ typedef T value_type;
731
+
732
+ template<class U>
733
+ struct rebind
734
+ {
735
+ typedef aligned_allocator<U> other;
736
+ };
737
+
738
+ aligned_allocator() : std::allocator<T>() {}
739
+
740
+ aligned_allocator(const aligned_allocator& other) : std::allocator<T>(other) {}
741
+
742
+ template<class U>
743
+ aligned_allocator(const aligned_allocator<U>& other) : std::allocator<T>(other) {}
744
+
745
+ ~aligned_allocator() {}
746
+
747
+ pointer allocate(size_type num, const void* /*hint*/ = 0)
748
+ {
749
+ internal::check_size_for_overflow<T>(num);
750
+ size_type size = num * sizeof(T);
751
+ #if EIGEN_COMP_GNUC_STRICT && EIGEN_GNUC_AT_LEAST(7,0)
752
+ // workaround gcc bug https://gcc.gnu.org/bugzilla/show_bug.cgi?id=87544
753
+ // It triggered eigen/Eigen/src/Core/util/Memory.h:189:12: warning: argument 1 value '18446744073709551612' exceeds maximum object size 9223372036854775807
754
+ if(size>=std::size_t((std::numeric_limits<std::ptrdiff_t>::max)()))
755
+ return 0;
756
+ else
757
+ #endif
758
+ return static_cast<pointer>( internal::aligned_malloc(size) );
759
+ }
760
+
761
+ void deallocate(pointer p, size_type /*num*/)
762
+ {
763
+ internal::aligned_free(p);
764
+ }
765
+ };
766
+
767
+ //---------- Cache sizes ----------
768
+
769
+ #if !defined(EIGEN_NO_CPUID)
770
+ # if EIGEN_COMP_GNUC && EIGEN_ARCH_i386_OR_x86_64
771
+ # if defined(__PIC__) && EIGEN_ARCH_i386
772
+ // Case for x86 with PIC
773
+ # define EIGEN_CPUID(abcd,func,id) \
774
+ __asm__ __volatile__ ("xchgl %%ebx, %k1;cpuid; xchgl %%ebx,%k1": "=a" (abcd[0]), "=&r" (abcd[1]), "=c" (abcd[2]), "=d" (abcd[3]) : "a" (func), "c" (id));
775
+ # elif defined(__PIC__) && EIGEN_ARCH_x86_64
776
+ // Case for x64 with PIC. In theory this is only a problem with recent gcc and with medium or large code model, not with the default small code model.
777
+ // However, we cannot detect which code model is used, and the xchg overhead is negligible anyway.
778
+ # define EIGEN_CPUID(abcd,func,id) \
779
+ __asm__ __volatile__ ("xchg{q}\t{%%}rbx, %q1; cpuid; xchg{q}\t{%%}rbx, %q1": "=a" (abcd[0]), "=&r" (abcd[1]), "=c" (abcd[2]), "=d" (abcd[3]) : "0" (func), "2" (id));
780
+ # else
781
+ // Case for x86_64 or x86 w/o PIC
782
+ # define EIGEN_CPUID(abcd,func,id) \
783
+ __asm__ __volatile__ ("cpuid": "=a" (abcd[0]), "=b" (abcd[1]), "=c" (abcd[2]), "=d" (abcd[3]) : "0" (func), "2" (id) );
784
+ # endif
785
+ # elif EIGEN_COMP_MSVC
786
+ # if (EIGEN_COMP_MSVC > 1500) && EIGEN_ARCH_i386_OR_x86_64
787
+ # define EIGEN_CPUID(abcd,func,id) __cpuidex((int*)abcd,func,id)
788
+ # endif
789
+ # endif
790
+ #endif
791
+
792
+ namespace internal {
793
+
794
+ #ifdef EIGEN_CPUID
795
+
796
+ inline bool cpuid_is_vendor(int abcd[4], const int vendor[3])
797
+ {
798
+ return abcd[1]==vendor[0] && abcd[3]==vendor[1] && abcd[2]==vendor[2];
799
+ }
800
+
801
+ inline void queryCacheSizes_intel_direct(int& l1, int& l2, int& l3)
802
+ {
803
+ int abcd[4];
804
+ l1 = l2 = l3 = 0;
805
+ int cache_id = 0;
806
+ int cache_type = 0;
807
+ do {
808
+ abcd[0] = abcd[1] = abcd[2] = abcd[3] = 0;
809
+ EIGEN_CPUID(abcd,0x4,cache_id);
810
+ cache_type = (abcd[0] & 0x0F) >> 0;
811
+ if(cache_type==1||cache_type==3) // data or unified cache
812
+ {
813
+ int cache_level = (abcd[0] & 0xE0) >> 5; // A[7:5]
814
+ int ways = (abcd[1] & 0xFFC00000) >> 22; // B[31:22]
815
+ int partitions = (abcd[1] & 0x003FF000) >> 12; // B[21:12]
816
+ int line_size = (abcd[1] & 0x00000FFF) >> 0; // B[11:0]
817
+ int sets = (abcd[2]); // C[31:0]
818
+
819
+ int cache_size = (ways+1) * (partitions+1) * (line_size+1) * (sets+1);
820
+
821
+ switch(cache_level)
822
+ {
823
+ case 1: l1 = cache_size; break;
824
+ case 2: l2 = cache_size; break;
825
+ case 3: l3 = cache_size; break;
826
+ default: break;
827
+ }
828
+ }
829
+ cache_id++;
830
+ } while(cache_type>0 && cache_id<16);
831
+ }
832
+
833
+ inline void queryCacheSizes_intel_codes(int& l1, int& l2, int& l3)
834
+ {
835
+ int abcd[4];
836
+ abcd[0] = abcd[1] = abcd[2] = abcd[3] = 0;
837
+ l1 = l2 = l3 = 0;
838
+ EIGEN_CPUID(abcd,0x00000002,0);
839
+ unsigned char * bytes = reinterpret_cast<unsigned char *>(abcd)+2;
840
+ bool check_for_p2_core2 = false;
841
+ for(int i=0; i<14; ++i)
842
+ {
843
+ switch(bytes[i])
844
+ {
845
+ case 0x0A: l1 = 8; break; // 0Ah data L1 cache, 8 KB, 2 ways, 32 byte lines
846
+ case 0x0C: l1 = 16; break; // 0Ch data L1 cache, 16 KB, 4 ways, 32 byte lines
847
+ case 0x0E: l1 = 24; break; // 0Eh data L1 cache, 24 KB, 6 ways, 64 byte lines
848
+ case 0x10: l1 = 16; break; // 10h data L1 cache, 16 KB, 4 ways, 32 byte lines (IA-64)
849
+ case 0x15: l1 = 16; break; // 15h code L1 cache, 16 KB, 4 ways, 32 byte lines (IA-64)
850
+ case 0x2C: l1 = 32; break; // 2Ch data L1 cache, 32 KB, 8 ways, 64 byte lines
851
+ case 0x30: l1 = 32; break; // 30h code L1 cache, 32 KB, 8 ways, 64 byte lines
852
+ case 0x60: l1 = 16; break; // 60h data L1 cache, 16 KB, 8 ways, 64 byte lines, sectored
853
+ case 0x66: l1 = 8; break; // 66h data L1 cache, 8 KB, 4 ways, 64 byte lines, sectored
854
+ case 0x67: l1 = 16; break; // 67h data L1 cache, 16 KB, 4 ways, 64 byte lines, sectored
855
+ case 0x68: l1 = 32; break; // 68h data L1 cache, 32 KB, 4 ways, 64 byte lines, sectored
856
+ case 0x1A: l2 = 96; break; // code and data L2 cache, 96 KB, 6 ways, 64 byte lines (IA-64)
857
+ case 0x22: l3 = 512; break; // code and data L3 cache, 512 KB, 4 ways (!), 64 byte lines, dual-sectored
858
+ case 0x23: l3 = 1024; break; // code and data L3 cache, 1024 KB, 8 ways, 64 byte lines, dual-sectored
859
+ case 0x25: l3 = 2048; break; // code and data L3 cache, 2048 KB, 8 ways, 64 byte lines, dual-sectored
860
+ case 0x29: l3 = 4096; break; // code and data L3 cache, 4096 KB, 8 ways, 64 byte lines, dual-sectored
861
+ case 0x39: l2 = 128; break; // code and data L2 cache, 128 KB, 4 ways, 64 byte lines, sectored
862
+ case 0x3A: l2 = 192; break; // code and data L2 cache, 192 KB, 6 ways, 64 byte lines, sectored
863
+ case 0x3B: l2 = 128; break; // code and data L2 cache, 128 KB, 2 ways, 64 byte lines, sectored
864
+ case 0x3C: l2 = 256; break; // code and data L2 cache, 256 KB, 4 ways, 64 byte lines, sectored
865
+ case 0x3D: l2 = 384; break; // code and data L2 cache, 384 KB, 6 ways, 64 byte lines, sectored
866
+ case 0x3E: l2 = 512; break; // code and data L2 cache, 512 KB, 4 ways, 64 byte lines, sectored
867
+ case 0x40: l2 = 0; break; // no integrated L2 cache (P6 core) or L3 cache (P4 core)
868
+ case 0x41: l2 = 128; break; // code and data L2 cache, 128 KB, 4 ways, 32 byte lines
869
+ case 0x42: l2 = 256; break; // code and data L2 cache, 256 KB, 4 ways, 32 byte lines
870
+ case 0x43: l2 = 512; break; // code and data L2 cache, 512 KB, 4 ways, 32 byte lines
871
+ case 0x44: l2 = 1024; break; // code and data L2 cache, 1024 KB, 4 ways, 32 byte lines
872
+ case 0x45: l2 = 2048; break; // code and data L2 cache, 2048 KB, 4 ways, 32 byte lines
873
+ case 0x46: l3 = 4096; break; // code and data L3 cache, 4096 KB, 4 ways, 64 byte lines
874
+ case 0x47: l3 = 8192; break; // code and data L3 cache, 8192 KB, 8 ways, 64 byte lines
875
+ case 0x48: l2 = 3072; break; // code and data L2 cache, 3072 KB, 12 ways, 64 byte lines
876
+ case 0x49: if(l2!=0) l3 = 4096; else {check_for_p2_core2=true; l3 = l2 = 4096;} break;// code and data L3 cache, 4096 KB, 16 ways, 64 byte lines (P4) or L2 for core2
877
+ case 0x4A: l3 = 6144; break; // code and data L3 cache, 6144 KB, 12 ways, 64 byte lines
878
+ case 0x4B: l3 = 8192; break; // code and data L3 cache, 8192 KB, 16 ways, 64 byte lines
879
+ case 0x4C: l3 = 12288; break; // code and data L3 cache, 12288 KB, 12 ways, 64 byte lines
880
+ case 0x4D: l3 = 16384; break; // code and data L3 cache, 16384 KB, 16 ways, 64 byte lines
881
+ case 0x4E: l2 = 6144; break; // code and data L2 cache, 6144 KB, 24 ways, 64 byte lines
882
+ case 0x78: l2 = 1024; break; // code and data L2 cache, 1024 KB, 4 ways, 64 byte lines
883
+ case 0x79: l2 = 128; break; // code and data L2 cache, 128 KB, 8 ways, 64 byte lines, dual-sectored
884
+ case 0x7A: l2 = 256; break; // code and data L2 cache, 256 KB, 8 ways, 64 byte lines, dual-sectored
885
+ case 0x7B: l2 = 512; break; // code and data L2 cache, 512 KB, 8 ways, 64 byte lines, dual-sectored
886
+ case 0x7C: l2 = 1024; break; // code and data L2 cache, 1024 KB, 8 ways, 64 byte lines, dual-sectored
887
+ case 0x7D: l2 = 2048; break; // code and data L2 cache, 2048 KB, 8 ways, 64 byte lines
888
+ case 0x7E: l2 = 256; break; // code and data L2 cache, 256 KB, 8 ways, 128 byte lines, sect. (IA-64)
889
+ case 0x7F: l2 = 512; break; // code and data L2 cache, 512 KB, 2 ways, 64 byte lines
890
+ case 0x80: l2 = 512; break; // code and data L2 cache, 512 KB, 8 ways, 64 byte lines
891
+ case 0x81: l2 = 128; break; // code and data L2 cache, 128 KB, 8 ways, 32 byte lines
892
+ case 0x82: l2 = 256; break; // code and data L2 cache, 256 KB, 8 ways, 32 byte lines
893
+ case 0x83: l2 = 512; break; // code and data L2 cache, 512 KB, 8 ways, 32 byte lines
894
+ case 0x84: l2 = 1024; break; // code and data L2 cache, 1024 KB, 8 ways, 32 byte lines
895
+ case 0x85: l2 = 2048; break; // code and data L2 cache, 2048 KB, 8 ways, 32 byte lines
896
+ case 0x86: l2 = 512; break; // code and data L2 cache, 512 KB, 4 ways, 64 byte lines
897
+ case 0x87: l2 = 1024; break; // code and data L2 cache, 1024 KB, 8 ways, 64 byte lines
898
+ case 0x88: l3 = 2048; break; // code and data L3 cache, 2048 KB, 4 ways, 64 byte lines (IA-64)
899
+ case 0x89: l3 = 4096; break; // code and data L3 cache, 4096 KB, 4 ways, 64 byte lines (IA-64)
900
+ case 0x8A: l3 = 8192; break; // code and data L3 cache, 8192 KB, 4 ways, 64 byte lines (IA-64)
901
+ case 0x8D: l3 = 3072; break; // code and data L3 cache, 3072 KB, 12 ways, 128 byte lines (IA-64)
902
+
903
+ default: break;
904
+ }
905
+ }
906
+ if(check_for_p2_core2 && l2 == l3)
907
+ l3 = 0;
908
+ l1 *= 1024;
909
+ l2 *= 1024;
910
+ l3 *= 1024;
911
+ }
912
+
913
+ inline void queryCacheSizes_intel(int& l1, int& l2, int& l3, int max_std_funcs)
914
+ {
915
+ if(max_std_funcs>=4)
916
+ queryCacheSizes_intel_direct(l1,l2,l3);
917
+ else
918
+ queryCacheSizes_intel_codes(l1,l2,l3);
919
+ }
920
+
921
+ inline void queryCacheSizes_amd(int& l1, int& l2, int& l3)
922
+ {
923
+ int abcd[4];
924
+ abcd[0] = abcd[1] = abcd[2] = abcd[3] = 0;
925
+ EIGEN_CPUID(abcd,0x80000005,0);
926
+ l1 = (abcd[2] >> 24) * 1024; // C[31:24] = L1 size in KB
927
+ abcd[0] = abcd[1] = abcd[2] = abcd[3] = 0;
928
+ EIGEN_CPUID(abcd,0x80000006,0);
929
+ l2 = (abcd[2] >> 16) * 1024; // C[31;16] = l2 cache size in KB
930
+ l3 = ((abcd[3] & 0xFFFC000) >> 18) * 512 * 1024; // D[31;18] = l3 cache size in 512KB
931
+ }
932
+ #endif
933
+
934
+ /** \internal
935
+ * Queries and returns the cache sizes in Bytes of the L1, L2, and L3 data caches respectively */
936
+ inline void queryCacheSizes(int& l1, int& l2, int& l3)
937
+ {
938
+ #ifdef EIGEN_CPUID
939
+ int abcd[4];
940
+ const int GenuineIntel[] = {0x756e6547, 0x49656e69, 0x6c65746e};
941
+ const int AuthenticAMD[] = {0x68747541, 0x69746e65, 0x444d4163};
942
+ const int AMDisbetter_[] = {0x69444d41, 0x74656273, 0x21726574}; // "AMDisbetter!"
943
+
944
+ // identify the CPU vendor
945
+ EIGEN_CPUID(abcd,0x0,0);
946
+ int max_std_funcs = abcd[1];
947
+ if(cpuid_is_vendor(abcd,GenuineIntel))
948
+ queryCacheSizes_intel(l1,l2,l3,max_std_funcs);
949
+ else if(cpuid_is_vendor(abcd,AuthenticAMD) || cpuid_is_vendor(abcd,AMDisbetter_))
950
+ queryCacheSizes_amd(l1,l2,l3);
951
+ else
952
+ // by default let's use Intel's API
953
+ queryCacheSizes_intel(l1,l2,l3,max_std_funcs);
954
+
955
+ // here is the list of other vendors:
956
+ // ||cpuid_is_vendor(abcd,"VIA VIA VIA ")
957
+ // ||cpuid_is_vendor(abcd,"CyrixInstead")
958
+ // ||cpuid_is_vendor(abcd,"CentaurHauls")
959
+ // ||cpuid_is_vendor(abcd,"GenuineTMx86")
960
+ // ||cpuid_is_vendor(abcd,"TransmetaCPU")
961
+ // ||cpuid_is_vendor(abcd,"RiseRiseRise")
962
+ // ||cpuid_is_vendor(abcd,"Geode by NSC")
963
+ // ||cpuid_is_vendor(abcd,"SiS SiS SiS ")
964
+ // ||cpuid_is_vendor(abcd,"UMC UMC UMC ")
965
+ // ||cpuid_is_vendor(abcd,"NexGenDriven")
966
+ #else
967
+ l1 = l2 = l3 = -1;
968
+ #endif
969
+ }
970
+
971
+ /** \internal
972
+ * \returns the size in Bytes of the L1 data cache */
973
+ inline int queryL1CacheSize()
974
+ {
975
+ int l1(-1), l2, l3;
976
+ queryCacheSizes(l1,l2,l3);
977
+ return l1;
978
+ }
979
+
980
+ /** \internal
981
+ * \returns the size in Bytes of the L2 or L3 cache if this later is present */
982
+ inline int queryTopLevelCacheSize()
983
+ {
984
+ int l1, l2(-1), l3(-1);
985
+ queryCacheSizes(l1,l2,l3);
986
+ return (std::max)(l2,l3);
987
+ }
988
+
989
+ } // end namespace internal
990
+
991
+ } // end namespace Eigen
992
+
993
+ #endif // EIGEN_MEMORY_H