tomoto 0.1.0

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Files changed (420) hide show
  1. checksums.yaml +7 -0
  2. data/CHANGELOG.md +3 -0
  3. data/LICENSE.txt +22 -0
  4. data/README.md +123 -0
  5. data/ext/tomoto/ext.cpp +245 -0
  6. data/ext/tomoto/extconf.rb +28 -0
  7. data/lib/tomoto.rb +12 -0
  8. data/lib/tomoto/ct.rb +11 -0
  9. data/lib/tomoto/hdp.rb +11 -0
  10. data/lib/tomoto/lda.rb +67 -0
  11. data/lib/tomoto/version.rb +3 -0
  12. data/vendor/EigenRand/EigenRand/Core.h +1139 -0
  13. data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
  14. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
  15. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
  16. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
  17. data/vendor/EigenRand/EigenRand/EigenRand +19 -0
  18. data/vendor/EigenRand/EigenRand/Macro.h +24 -0
  19. data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
  20. data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
  21. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
  22. data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
  23. data/vendor/EigenRand/EigenRand/doc.h +220 -0
  24. data/vendor/EigenRand/LICENSE +21 -0
  25. data/vendor/EigenRand/README.md +288 -0
  26. data/vendor/eigen/COPYING.BSD +26 -0
  27. data/vendor/eigen/COPYING.GPL +674 -0
  28. data/vendor/eigen/COPYING.LGPL +502 -0
  29. data/vendor/eigen/COPYING.MINPACK +52 -0
  30. data/vendor/eigen/COPYING.MPL2 +373 -0
  31. data/vendor/eigen/COPYING.README +18 -0
  32. data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
  33. data/vendor/eigen/Eigen/Cholesky +46 -0
  34. data/vendor/eigen/Eigen/CholmodSupport +48 -0
  35. data/vendor/eigen/Eigen/Core +537 -0
  36. data/vendor/eigen/Eigen/Dense +7 -0
  37. data/vendor/eigen/Eigen/Eigen +2 -0
  38. data/vendor/eigen/Eigen/Eigenvalues +61 -0
  39. data/vendor/eigen/Eigen/Geometry +62 -0
  40. data/vendor/eigen/Eigen/Householder +30 -0
  41. data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
  42. data/vendor/eigen/Eigen/Jacobi +33 -0
  43. data/vendor/eigen/Eigen/LU +50 -0
  44. data/vendor/eigen/Eigen/MetisSupport +35 -0
  45. data/vendor/eigen/Eigen/OrderingMethods +73 -0
  46. data/vendor/eigen/Eigen/PaStiXSupport +48 -0
  47. data/vendor/eigen/Eigen/PardisoSupport +35 -0
  48. data/vendor/eigen/Eigen/QR +51 -0
  49. data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
  50. data/vendor/eigen/Eigen/SPQRSupport +34 -0
  51. data/vendor/eigen/Eigen/SVD +51 -0
  52. data/vendor/eigen/Eigen/Sparse +36 -0
  53. data/vendor/eigen/Eigen/SparseCholesky +45 -0
  54. data/vendor/eigen/Eigen/SparseCore +69 -0
  55. data/vendor/eigen/Eigen/SparseLU +46 -0
  56. data/vendor/eigen/Eigen/SparseQR +37 -0
  57. data/vendor/eigen/Eigen/StdDeque +27 -0
  58. data/vendor/eigen/Eigen/StdList +26 -0
  59. data/vendor/eigen/Eigen/StdVector +27 -0
  60. data/vendor/eigen/Eigen/SuperLUSupport +64 -0
  61. data/vendor/eigen/Eigen/UmfPackSupport +40 -0
  62. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
  63. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
  64. data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  65. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
  66. data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
  67. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
  68. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
  69. data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
  70. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
  71. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
  72. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
  73. data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
  74. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
  75. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
  76. data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
  77. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
  78. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
  79. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
  80. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
  81. data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  82. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
  84. data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
  85. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
  86. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
  87. data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
  88. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
  89. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
  90. data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
  91. data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
  92. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  93. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
  94. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
  95. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
  96. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
  97. data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
  98. data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
  99. data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
  100. data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
  101. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
  102. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
  103. data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
  104. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
  105. data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
  106. data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
  107. data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
  108. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
  109. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
  110. data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
  111. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
  112. data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
  113. data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
  114. data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
  115. data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
  116. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
  117. data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
  118. data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
  119. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
  120. data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  121. data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
  122. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
  123. data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
  124. data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
  125. data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
  126. data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
  127. data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
  128. data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
  129. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
  130. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
  131. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
  132. data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
  133. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
  134. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
  135. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
  136. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
  137. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
  138. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
  139. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
  140. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
  141. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
  142. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
  143. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
  145. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
  146. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
  148. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
  149. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
  153. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
  154. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
  156. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
  160. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
  161. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
  162. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
  163. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
  164. data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  165. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
  166. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
  167. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
  168. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
  169. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  170. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
  171. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
  172. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  173. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
  174. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
  175. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
  176. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
  177. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  178. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  179. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  180. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
  181. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
  182. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  183. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  184. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
  185. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
  186. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
  187. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
  188. data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
  189. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
  190. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  191. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
  192. data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
  193. data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
  194. data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
  195. data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
  196. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
  197. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
  198. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
  199. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  200. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
  201. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  202. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  203. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  204. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  205. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  206. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  207. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
  208. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
  209. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  210. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
  211. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  212. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
  213. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
  214. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
  215. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
  216. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
  217. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
  218. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
  219. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  220. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
  221. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
  222. data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
  223. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
  224. data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
  225. data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
  226. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
  227. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
  228. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
  229. data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
  230. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
  231. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  232. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
  233. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
  234. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
  235. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
  236. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
  237. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
  238. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
  239. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
  240. data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
  241. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
  242. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
  243. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
  244. data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  245. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
  246. data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  247. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
  248. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
  249. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
  250. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  251. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
  252. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
  253. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  254. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
  255. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
  256. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
  257. data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  258. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
  259. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
  260. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
  261. data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  262. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
  263. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  264. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
  265. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  266. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
  267. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
  268. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  269. data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  270. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
  271. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
  272. data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  273. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
  274. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
  275. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
  276. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
  277. data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  278. data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
  279. data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  280. data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
  281. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
  282. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
  283. data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  284. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
  285. data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
  295. data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  296. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
  297. data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  298. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  299. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  300. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  307. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  308. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  309. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  310. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  311. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  312. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  313. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
  314. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +126 -0
  315. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
  316. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
  317. data/vendor/eigen/Eigen/src/StlSupport/details.h +84 -0
  318. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
  319. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
  320. data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
  321. data/vendor/eigen/Eigen/src/misc/Kernel.h +79 -0
  322. data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
  323. data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
  324. data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
  325. data/vendor/eigen/Eigen/src/misc/lapacke.h +16291 -0
  326. data/vendor/eigen/Eigen/src/misc/lapacke_mangling.h +17 -0
  327. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +332 -0
  328. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
  329. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
  330. data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  331. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +163 -0
  332. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  333. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
  334. data/vendor/eigen/README.md +3 -0
  335. data/vendor/eigen/bench/README.txt +55 -0
  336. data/vendor/eigen/bench/btl/COPYING +340 -0
  337. data/vendor/eigen/bench/btl/README +154 -0
  338. data/vendor/eigen/bench/tensors/README +21 -0
  339. data/vendor/eigen/blas/README.txt +6 -0
  340. data/vendor/eigen/demos/mandelbrot/README +10 -0
  341. data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
  342. data/vendor/eigen/demos/opengl/README +13 -0
  343. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
  344. data/vendor/eigen/unsupported/README.txt +50 -0
  345. data/vendor/tomotopy/LICENSE +21 -0
  346. data/vendor/tomotopy/README.kr.rst +375 -0
  347. data/vendor/tomotopy/README.rst +382 -0
  348. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
  349. data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
  350. data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
  351. data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
  352. data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
  353. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
  354. data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
  355. data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
  356. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
  357. data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
  358. data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
  359. data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
  360. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
  361. data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
  362. data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
  363. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
  364. data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
  365. data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
  366. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
  367. data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
  368. data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
  369. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
  370. data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
  371. data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
  372. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
  373. data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
  374. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
  375. data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
  376. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
  377. data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
  378. data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
  379. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
  380. data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
  381. data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
  382. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
  383. data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
  384. data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
  385. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
  386. data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
  387. data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
  388. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
  389. data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
  390. data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
  391. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
  392. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
  393. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +169 -0
  394. data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
  395. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
  396. data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
  397. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
  398. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
  399. data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
  400. data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
  401. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
  402. data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
  403. data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
  404. data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
  405. data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
  406. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
  407. data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
  408. data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
  409. data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
  410. data/vendor/tomotopy/src/Utils/exception.h +28 -0
  411. data/vendor/tomotopy/src/Utils/math.h +281 -0
  412. data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
  413. data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
  414. data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
  415. data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
  416. data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
  417. data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
  418. data/vendor/tomotopy/src/Utils/text.hpp +49 -0
  419. data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
  420. metadata +531 -0
@@ -0,0 +1,83 @@
1
+ #ifndef EIGEN_WARNINGS_DISABLED
2
+ #define EIGEN_WARNINGS_DISABLED
3
+
4
+ #ifdef _MSC_VER
5
+ // 4100 - unreferenced formal parameter (occurred e.g. in aligned_allocator::destroy(pointer p))
6
+ // 4101 - unreferenced local variable
7
+ // 4127 - conditional expression is constant
8
+ // 4181 - qualifier applied to reference type ignored
9
+ // 4211 - nonstandard extension used : redefined extern to static
10
+ // 4244 - 'argument' : conversion from 'type1' to 'type2', possible loss of data
11
+ // 4273 - QtAlignedMalloc, inconsistent DLL linkage
12
+ // 4324 - structure was padded due to declspec(align())
13
+ // 4503 - decorated name length exceeded, name was truncated
14
+ // 4512 - assignment operator could not be generated
15
+ // 4522 - 'class' : multiple assignment operators specified
16
+ // 4700 - uninitialized local variable 'xyz' used
17
+ // 4714 - function marked as __forceinline not inlined
18
+ // 4717 - 'function' : recursive on all control paths, function will cause runtime stack overflow
19
+ // 4800 - 'type' : forcing value to bool 'true' or 'false' (performance warning)
20
+ #ifndef EIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS
21
+ #pragma warning( push )
22
+ #endif
23
+ #pragma warning( disable : 4100 4101 4127 4181 4211 4244 4273 4324 4503 4512 4522 4700 4714 4717 4800)
24
+
25
+ #elif defined __INTEL_COMPILER
26
+ // 2196 - routine is both "inline" and "noinline" ("noinline" assumed)
27
+ // ICC 12 generates this warning even without any inline keyword, when defining class methods 'inline' i.e. inside of class body
28
+ // typedef that may be a reference type.
29
+ // 279 - controlling expression is constant
30
+ // ICC 12 generates this warning on assert(constant_expression_depending_on_template_params) and frankly this is a legitimate use case.
31
+ // 1684 - conversion from pointer to same-sized integral type (potential portability problem)
32
+ // 2259 - non-pointer conversion from "Eigen::Index={ptrdiff_t={long}}" to "int" may lose significant bits
33
+ #ifndef EIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS
34
+ #pragma warning push
35
+ #endif
36
+ #pragma warning disable 2196 279 1684 2259
37
+
38
+ #elif defined __clang__
39
+ // -Wconstant-logical-operand - warning: use of logical && with constant operand; switch to bitwise & or remove constant
40
+ // this is really a stupid warning as it warns on compile-time expressions involving enums
41
+ #ifndef EIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS
42
+ #pragma clang diagnostic push
43
+ #endif
44
+ #pragma clang diagnostic ignored "-Wconstant-logical-operand"
45
+
46
+ #elif defined __GNUC__
47
+
48
+ #if (!defined(EIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS)) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 6))
49
+ #pragma GCC diagnostic push
50
+ #endif
51
+ // g++ warns about local variables shadowing member functions, which is too strict
52
+ #pragma GCC diagnostic ignored "-Wshadow"
53
+ #if __GNUC__ == 4 && __GNUC_MINOR__ < 8
54
+ // Until g++-4.7 there are warnings when comparing unsigned int vs 0, even in templated functions:
55
+ #pragma GCC diagnostic ignored "-Wtype-limits"
56
+ #endif
57
+ #if __GNUC__>=6
58
+ #pragma GCC diagnostic ignored "-Wignored-attributes"
59
+ #endif
60
+
61
+ #endif
62
+
63
+ #if defined __NVCC__
64
+ // Disable the "statement is unreachable" message
65
+ #pragma diag_suppress code_is_unreachable
66
+ // Disable the "dynamic initialization in unreachable code" message
67
+ #pragma diag_suppress initialization_not_reachable
68
+ // Disable the "invalid error number" message that we get with older versions of nvcc
69
+ #pragma diag_suppress 1222
70
+ // Disable the "calling a __host__ function from a __host__ __device__ function is not allowed" messages (yes, there are many of them and they seem to change with every version of the compiler)
71
+ #pragma diag_suppress 2527
72
+ #pragma diag_suppress 2529
73
+ #pragma diag_suppress 2651
74
+ #pragma diag_suppress 2653
75
+ #pragma diag_suppress 2668
76
+ #pragma diag_suppress 2669
77
+ #pragma diag_suppress 2670
78
+ #pragma diag_suppress 2671
79
+ #pragma diag_suppress 2735
80
+ #pragma diag_suppress 2737
81
+ #endif
82
+
83
+ #endif // not EIGEN_WARNINGS_DISABLED
@@ -0,0 +1,302 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2007-2010 Benoit Jacob <jacob.benoit.1@gmail.com>
5
+ // Copyright (C) 2008-2009 Gael Guennebaud <gael.guennebaud@inria.fr>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_FORWARDDECLARATIONS_H
12
+ #define EIGEN_FORWARDDECLARATIONS_H
13
+
14
+ namespace Eigen {
15
+ namespace internal {
16
+
17
+ template<typename T> struct traits;
18
+
19
+ // here we say once and for all that traits<const T> == traits<T>
20
+ // When constness must affect traits, it has to be constness on template parameters on which T itself depends.
21
+ // For example, traits<Map<const T> > != traits<Map<T> >, but
22
+ // traits<const Map<T> > == traits<Map<T> >
23
+ template<typename T> struct traits<const T> : traits<T> {};
24
+
25
+ template<typename Derived> struct has_direct_access
26
+ {
27
+ enum { ret = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0 };
28
+ };
29
+
30
+ template<typename Derived> struct accessors_level
31
+ {
32
+ enum { has_direct_access = (traits<Derived>::Flags & DirectAccessBit) ? 1 : 0,
33
+ has_write_access = (traits<Derived>::Flags & LvalueBit) ? 1 : 0,
34
+ value = has_direct_access ? (has_write_access ? DirectWriteAccessors : DirectAccessors)
35
+ : (has_write_access ? WriteAccessors : ReadOnlyAccessors)
36
+ };
37
+ };
38
+
39
+ template<typename T> struct evaluator_traits;
40
+
41
+ template< typename T> struct evaluator;
42
+
43
+ } // end namespace internal
44
+
45
+ template<typename T> struct NumTraits;
46
+
47
+ template<typename Derived> struct EigenBase;
48
+ template<typename Derived> class DenseBase;
49
+ template<typename Derived> class PlainObjectBase;
50
+
51
+
52
+ template<typename Derived,
53
+ int Level = internal::accessors_level<Derived>::value >
54
+ class DenseCoeffsBase;
55
+
56
+ template<typename _Scalar, int _Rows, int _Cols,
57
+ int _Options = AutoAlign |
58
+ #if EIGEN_GNUC_AT(3,4)
59
+ // workaround a bug in at least gcc 3.4.6
60
+ // the innermost ?: ternary operator is misparsed. We write it slightly
61
+ // differently and this makes gcc 3.4.6 happy, but it's ugly.
62
+ // The error would only show up with EIGEN_DEFAULT_TO_ROW_MAJOR is defined
63
+ // (when EIGEN_DEFAULT_MATRIX_STORAGE_ORDER_OPTION is RowMajor)
64
+ ( (_Rows==1 && _Cols!=1) ? Eigen::RowMajor
65
+ : !(_Cols==1 && _Rows!=1) ? EIGEN_DEFAULT_MATRIX_STORAGE_ORDER_OPTION
66
+ : Eigen::ColMajor ),
67
+ #else
68
+ ( (_Rows==1 && _Cols!=1) ? Eigen::RowMajor
69
+ : (_Cols==1 && _Rows!=1) ? Eigen::ColMajor
70
+ : EIGEN_DEFAULT_MATRIX_STORAGE_ORDER_OPTION ),
71
+ #endif
72
+ int _MaxRows = _Rows,
73
+ int _MaxCols = _Cols
74
+ > class Matrix;
75
+
76
+ template<typename Derived> class MatrixBase;
77
+ template<typename Derived> class ArrayBase;
78
+
79
+ template<typename ExpressionType, unsigned int Added, unsigned int Removed> class Flagged;
80
+ template<typename ExpressionType, template <typename> class StorageBase > class NoAlias;
81
+ template<typename ExpressionType> class NestByValue;
82
+ template<typename ExpressionType> class ForceAlignedAccess;
83
+ template<typename ExpressionType> class SwapWrapper;
84
+
85
+ template<typename XprType, int BlockRows=Dynamic, int BlockCols=Dynamic, bool InnerPanel = false> class Block;
86
+
87
+ template<typename MatrixType, int Size=Dynamic> class VectorBlock;
88
+ template<typename MatrixType> class Transpose;
89
+ template<typename MatrixType> class Conjugate;
90
+ template<typename NullaryOp, typename MatrixType> class CwiseNullaryOp;
91
+ template<typename UnaryOp, typename MatrixType> class CwiseUnaryOp;
92
+ template<typename ViewOp, typename MatrixType> class CwiseUnaryView;
93
+ template<typename BinaryOp, typename Lhs, typename Rhs> class CwiseBinaryOp;
94
+ template<typename TernaryOp, typename Arg1, typename Arg2, typename Arg3> class CwiseTernaryOp;
95
+ template<typename Decomposition, typename Rhstype> class Solve;
96
+ template<typename XprType> class Inverse;
97
+
98
+ template<typename Lhs, typename Rhs, int Option = DefaultProduct> class Product;
99
+
100
+ template<typename Derived> class DiagonalBase;
101
+ template<typename _DiagonalVectorType> class DiagonalWrapper;
102
+ template<typename _Scalar, int SizeAtCompileTime, int MaxSizeAtCompileTime=SizeAtCompileTime> class DiagonalMatrix;
103
+ template<typename MatrixType, typename DiagonalType, int ProductOrder> class DiagonalProduct;
104
+ template<typename MatrixType, int Index = 0> class Diagonal;
105
+ template<int SizeAtCompileTime, int MaxSizeAtCompileTime = SizeAtCompileTime, typename IndexType=int> class PermutationMatrix;
106
+ template<int SizeAtCompileTime, int MaxSizeAtCompileTime = SizeAtCompileTime, typename IndexType=int> class Transpositions;
107
+ template<typename Derived> class PermutationBase;
108
+ template<typename Derived> class TranspositionsBase;
109
+ template<typename _IndicesType> class PermutationWrapper;
110
+ template<typename _IndicesType> class TranspositionsWrapper;
111
+
112
+ template<typename Derived,
113
+ int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
114
+ > class MapBase;
115
+ template<int InnerStrideAtCompileTime, int OuterStrideAtCompileTime> class Stride;
116
+ template<int Value = Dynamic> class InnerStride;
117
+ template<int Value = Dynamic> class OuterStride;
118
+ template<typename MatrixType, int MapOptions=Unaligned, typename StrideType = Stride<0,0> > class Map;
119
+ template<typename Derived> class RefBase;
120
+ template<typename PlainObjectType, int Options = 0,
121
+ typename StrideType = typename internal::conditional<PlainObjectType::IsVectorAtCompileTime,InnerStride<1>,OuterStride<> >::type > class Ref;
122
+
123
+ template<typename Derived> class TriangularBase;
124
+ template<typename MatrixType, unsigned int Mode> class TriangularView;
125
+ template<typename MatrixType, unsigned int Mode> class SelfAdjointView;
126
+ template<typename MatrixType> class SparseView;
127
+ template<typename ExpressionType> class WithFormat;
128
+ template<typename MatrixType> struct CommaInitializer;
129
+ template<typename Derived> class ReturnByValue;
130
+ template<typename ExpressionType> class ArrayWrapper;
131
+ template<typename ExpressionType> class MatrixWrapper;
132
+ template<typename Derived> class SolverBase;
133
+ template<typename XprType> class InnerIterator;
134
+
135
+ namespace internal {
136
+ template<typename DecompositionType> struct kernel_retval_base;
137
+ template<typename DecompositionType> struct kernel_retval;
138
+ template<typename DecompositionType> struct image_retval_base;
139
+ template<typename DecompositionType> struct image_retval;
140
+ } // end namespace internal
141
+
142
+ namespace internal {
143
+ template<typename _Scalar, int Rows=Dynamic, int Cols=Dynamic, int Supers=Dynamic, int Subs=Dynamic, int Options=0> class BandMatrix;
144
+ }
145
+
146
+ namespace internal {
147
+ template<typename Lhs, typename Rhs> struct product_type;
148
+
149
+ template<bool> struct EnableIf;
150
+
151
+ /** \internal
152
+ * \class product_evaluator
153
+ * Products need their own evaluator with more template arguments allowing for
154
+ * easier partial template specializations.
155
+ */
156
+ template< typename T,
157
+ int ProductTag = internal::product_type<typename T::Lhs,typename T::Rhs>::ret,
158
+ typename LhsShape = typename evaluator_traits<typename T::Lhs>::Shape,
159
+ typename RhsShape = typename evaluator_traits<typename T::Rhs>::Shape,
160
+ typename LhsScalar = typename traits<typename T::Lhs>::Scalar,
161
+ typename RhsScalar = typename traits<typename T::Rhs>::Scalar
162
+ > struct product_evaluator;
163
+ }
164
+
165
+ template<typename Lhs, typename Rhs,
166
+ int ProductType = internal::product_type<Lhs,Rhs>::value>
167
+ struct ProductReturnType;
168
+
169
+ // this is a workaround for sun CC
170
+ template<typename Lhs, typename Rhs> struct LazyProductReturnType;
171
+
172
+ namespace internal {
173
+
174
+ // Provides scalar/packet-wise product and product with accumulation
175
+ // with optional conjugation of the arguments.
176
+ template<typename LhsScalar, typename RhsScalar, bool ConjLhs=false, bool ConjRhs=false> struct conj_helper;
177
+
178
+ template<typename LhsScalar,typename RhsScalar=LhsScalar> struct scalar_sum_op;
179
+ template<typename LhsScalar,typename RhsScalar=LhsScalar> struct scalar_difference_op;
180
+ template<typename LhsScalar,typename RhsScalar=LhsScalar> struct scalar_conj_product_op;
181
+ template<typename LhsScalar,typename RhsScalar=LhsScalar> struct scalar_min_op;
182
+ template<typename LhsScalar,typename RhsScalar=LhsScalar> struct scalar_max_op;
183
+ template<typename Scalar> struct scalar_opposite_op;
184
+ template<typename Scalar> struct scalar_conjugate_op;
185
+ template<typename Scalar> struct scalar_real_op;
186
+ template<typename Scalar> struct scalar_imag_op;
187
+ template<typename Scalar> struct scalar_abs_op;
188
+ template<typename Scalar> struct scalar_abs2_op;
189
+ template<typename Scalar> struct scalar_sqrt_op;
190
+ template<typename Scalar> struct scalar_rsqrt_op;
191
+ template<typename Scalar> struct scalar_exp_op;
192
+ template<typename Scalar> struct scalar_log_op;
193
+ template<typename Scalar> struct scalar_cos_op;
194
+ template<typename Scalar> struct scalar_sin_op;
195
+ template<typename Scalar> struct scalar_acos_op;
196
+ template<typename Scalar> struct scalar_asin_op;
197
+ template<typename Scalar> struct scalar_tan_op;
198
+ template<typename Scalar> struct scalar_inverse_op;
199
+ template<typename Scalar> struct scalar_square_op;
200
+ template<typename Scalar> struct scalar_cube_op;
201
+ template<typename Scalar, typename NewType> struct scalar_cast_op;
202
+ template<typename Scalar> struct scalar_random_op;
203
+ template<typename Scalar> struct scalar_constant_op;
204
+ template<typename Scalar> struct scalar_identity_op;
205
+ template<typename Scalar,bool iscpx> struct scalar_sign_op;
206
+ template<typename Scalar,typename ScalarExponent> struct scalar_pow_op;
207
+ template<typename LhsScalar,typename RhsScalar=LhsScalar> struct scalar_hypot_op;
208
+ template<typename LhsScalar,typename RhsScalar=LhsScalar> struct scalar_product_op;
209
+ template<typename LhsScalar,typename RhsScalar=LhsScalar> struct scalar_quotient_op;
210
+
211
+ // SpecialFunctions module
212
+ template<typename Scalar> struct scalar_lgamma_op;
213
+ template<typename Scalar> struct scalar_digamma_op;
214
+ template<typename Scalar> struct scalar_erf_op;
215
+ template<typename Scalar> struct scalar_erfc_op;
216
+ template<typename Scalar> struct scalar_igamma_op;
217
+ template<typename Scalar> struct scalar_igammac_op;
218
+ template<typename Scalar> struct scalar_zeta_op;
219
+ template<typename Scalar> struct scalar_betainc_op;
220
+
221
+ } // end namespace internal
222
+
223
+ struct IOFormat;
224
+
225
+ // Array module
226
+ template<typename _Scalar, int _Rows, int _Cols,
227
+ int _Options = AutoAlign |
228
+ #if EIGEN_GNUC_AT(3,4)
229
+ // workaround a bug in at least gcc 3.4.6
230
+ // the innermost ?: ternary operator is misparsed. We write it slightly
231
+ // differently and this makes gcc 3.4.6 happy, but it's ugly.
232
+ // The error would only show up with EIGEN_DEFAULT_TO_ROW_MAJOR is defined
233
+ // (when EIGEN_DEFAULT_MATRIX_STORAGE_ORDER_OPTION is RowMajor)
234
+ ( (_Rows==1 && _Cols!=1) ? Eigen::RowMajor
235
+ : !(_Cols==1 && _Rows!=1) ? EIGEN_DEFAULT_MATRIX_STORAGE_ORDER_OPTION
236
+ : Eigen::ColMajor ),
237
+ #else
238
+ ( (_Rows==1 && _Cols!=1) ? Eigen::RowMajor
239
+ : (_Cols==1 && _Rows!=1) ? Eigen::ColMajor
240
+ : EIGEN_DEFAULT_MATRIX_STORAGE_ORDER_OPTION ),
241
+ #endif
242
+ int _MaxRows = _Rows, int _MaxCols = _Cols> class Array;
243
+ template<typename ConditionMatrixType, typename ThenMatrixType, typename ElseMatrixType> class Select;
244
+ template<typename MatrixType, typename BinaryOp, int Direction> class PartialReduxExpr;
245
+ template<typename ExpressionType, int Direction> class VectorwiseOp;
246
+ template<typename MatrixType,int RowFactor,int ColFactor> class Replicate;
247
+ template<typename MatrixType, int Direction = BothDirections> class Reverse;
248
+
249
+ template<typename MatrixType> class FullPivLU;
250
+ template<typename MatrixType> class PartialPivLU;
251
+ namespace internal {
252
+ template<typename MatrixType> struct inverse_impl;
253
+ }
254
+ template<typename MatrixType> class HouseholderQR;
255
+ template<typename MatrixType> class ColPivHouseholderQR;
256
+ template<typename MatrixType> class FullPivHouseholderQR;
257
+ template<typename MatrixType> class CompleteOrthogonalDecomposition;
258
+ template<typename MatrixType, int QRPreconditioner = ColPivHouseholderQRPreconditioner> class JacobiSVD;
259
+ template<typename MatrixType> class BDCSVD;
260
+ template<typename MatrixType, int UpLo = Lower> class LLT;
261
+ template<typename MatrixType, int UpLo = Lower> class LDLT;
262
+ template<typename VectorsType, typename CoeffsType, int Side=OnTheLeft> class HouseholderSequence;
263
+ template<typename Scalar> class JacobiRotation;
264
+
265
+ // Geometry module:
266
+ template<typename Derived, int _Dim> class RotationBase;
267
+ template<typename Lhs, typename Rhs> class Cross;
268
+ template<typename Derived> class QuaternionBase;
269
+ template<typename Scalar> class Rotation2D;
270
+ template<typename Scalar> class AngleAxis;
271
+ template<typename Scalar,int Dim> class Translation;
272
+ template<typename Scalar,int Dim> class AlignedBox;
273
+ template<typename Scalar, int Options = AutoAlign> class Quaternion;
274
+ template<typename Scalar,int Dim,int Mode,int _Options=AutoAlign> class Transform;
275
+ template <typename _Scalar, int _AmbientDim, int Options=AutoAlign> class ParametrizedLine;
276
+ template <typename _Scalar, int _AmbientDim, int Options=AutoAlign> class Hyperplane;
277
+ template<typename Scalar> class UniformScaling;
278
+ template<typename MatrixType,int Direction> class Homogeneous;
279
+
280
+ // Sparse module:
281
+ template<typename Derived> class SparseMatrixBase;
282
+
283
+ // MatrixFunctions module
284
+ template<typename Derived> struct MatrixExponentialReturnValue;
285
+ template<typename Derived> class MatrixFunctionReturnValue;
286
+ template<typename Derived> class MatrixSquareRootReturnValue;
287
+ template<typename Derived> class MatrixLogarithmReturnValue;
288
+ template<typename Derived> class MatrixPowerReturnValue;
289
+ template<typename Derived> class MatrixComplexPowerReturnValue;
290
+
291
+ namespace internal {
292
+ template <typename Scalar>
293
+ struct stem_function
294
+ {
295
+ typedef std::complex<typename NumTraits<Scalar>::Real> ComplexScalar;
296
+ typedef ComplexScalar type(ComplexScalar, int);
297
+ };
298
+ }
299
+
300
+ } // end namespace Eigen
301
+
302
+ #endif // EIGEN_FORWARDDECLARATIONS_H
@@ -0,0 +1,130 @@
1
+ /*
2
+ Copyright (c) 2011, Intel Corporation. All rights reserved.
3
+
4
+ Redistribution and use in source and binary forms, with or without modification,
5
+ are permitted provided that the following conditions are met:
6
+
7
+ * Redistributions of source code must retain the above copyright notice, this
8
+ list of conditions and the following disclaimer.
9
+ * Redistributions in binary form must reproduce the above copyright notice,
10
+ this list of conditions and the following disclaimer in the documentation
11
+ and/or other materials provided with the distribution.
12
+ * Neither the name of Intel Corporation nor the names of its contributors may
13
+ be used to endorse or promote products derived from this software without
14
+ specific prior written permission.
15
+
16
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
17
+ ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
18
+ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
19
+ DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
20
+ ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
21
+ (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
22
+ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
23
+ ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
24
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
25
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
26
+
27
+ ********************************************************************************
28
+ * Content : Eigen bindings to Intel(R) MKL
29
+ * Include file with common MKL declarations
30
+ ********************************************************************************
31
+ */
32
+
33
+ #ifndef EIGEN_MKL_SUPPORT_H
34
+ #define EIGEN_MKL_SUPPORT_H
35
+
36
+ #ifdef EIGEN_USE_MKL_ALL
37
+ #ifndef EIGEN_USE_BLAS
38
+ #define EIGEN_USE_BLAS
39
+ #endif
40
+ #ifndef EIGEN_USE_LAPACKE
41
+ #define EIGEN_USE_LAPACKE
42
+ #endif
43
+ #ifndef EIGEN_USE_MKL_VML
44
+ #define EIGEN_USE_MKL_VML
45
+ #endif
46
+ #endif
47
+
48
+ #ifdef EIGEN_USE_LAPACKE_STRICT
49
+ #define EIGEN_USE_LAPACKE
50
+ #endif
51
+
52
+ #if defined(EIGEN_USE_MKL_VML) && !defined(EIGEN_USE_MKL)
53
+ #define EIGEN_USE_MKL
54
+ #endif
55
+
56
+
57
+ #if defined EIGEN_USE_MKL
58
+ # include <mkl.h>
59
+ /*Check IMKL version for compatibility: < 10.3 is not usable with Eigen*/
60
+ # ifndef INTEL_MKL_VERSION
61
+ # undef EIGEN_USE_MKL /* INTEL_MKL_VERSION is not even defined on older versions */
62
+ # elif INTEL_MKL_VERSION < 100305 /* the intel-mkl-103-release-notes say this was when the lapacke.h interface was added*/
63
+ # undef EIGEN_USE_MKL
64
+ # endif
65
+ # ifndef EIGEN_USE_MKL
66
+ /*If the MKL version is too old, undef everything*/
67
+ # undef EIGEN_USE_MKL_ALL
68
+ # undef EIGEN_USE_LAPACKE
69
+ # undef EIGEN_USE_MKL_VML
70
+ # undef EIGEN_USE_LAPACKE_STRICT
71
+ # undef EIGEN_USE_LAPACKE
72
+ # endif
73
+ #endif
74
+
75
+ #if defined EIGEN_USE_MKL
76
+
77
+ #define EIGEN_MKL_VML_THRESHOLD 128
78
+
79
+ /* MKL_DOMAIN_BLAS, etc are defined only in 10.3 update 7 */
80
+ /* MKL_BLAS, etc are not defined in 11.2 */
81
+ #ifdef MKL_DOMAIN_ALL
82
+ #define EIGEN_MKL_DOMAIN_ALL MKL_DOMAIN_ALL
83
+ #else
84
+ #define EIGEN_MKL_DOMAIN_ALL MKL_ALL
85
+ #endif
86
+
87
+ #ifdef MKL_DOMAIN_BLAS
88
+ #define EIGEN_MKL_DOMAIN_BLAS MKL_DOMAIN_BLAS
89
+ #else
90
+ #define EIGEN_MKL_DOMAIN_BLAS MKL_BLAS
91
+ #endif
92
+
93
+ #ifdef MKL_DOMAIN_FFT
94
+ #define EIGEN_MKL_DOMAIN_FFT MKL_DOMAIN_FFT
95
+ #else
96
+ #define EIGEN_MKL_DOMAIN_FFT MKL_FFT
97
+ #endif
98
+
99
+ #ifdef MKL_DOMAIN_VML
100
+ #define EIGEN_MKL_DOMAIN_VML MKL_DOMAIN_VML
101
+ #else
102
+ #define EIGEN_MKL_DOMAIN_VML MKL_VML
103
+ #endif
104
+
105
+ #ifdef MKL_DOMAIN_PARDISO
106
+ #define EIGEN_MKL_DOMAIN_PARDISO MKL_DOMAIN_PARDISO
107
+ #else
108
+ #define EIGEN_MKL_DOMAIN_PARDISO MKL_PARDISO
109
+ #endif
110
+ #endif
111
+
112
+ #if defined(EIGEN_USE_BLAS) && !defined(EIGEN_USE_MKL)
113
+ #include "../../misc/blas.h"
114
+ #endif
115
+
116
+ namespace Eigen {
117
+
118
+ typedef std::complex<double> dcomplex;
119
+ typedef std::complex<float> scomplex;
120
+
121
+ #if defined(EIGEN_USE_MKL)
122
+ typedef MKL_INT BlasIndex;
123
+ #else
124
+ typedef int BlasIndex;
125
+ #endif
126
+
127
+ } // end namespace Eigen
128
+
129
+
130
+ #endif // EIGEN_MKL_SUPPORT_H