tomoto 0.1.0
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +7 -0
- data/CHANGELOG.md +3 -0
- data/LICENSE.txt +22 -0
- data/README.md +123 -0
- data/ext/tomoto/ext.cpp +245 -0
- data/ext/tomoto/extconf.rb +28 -0
- data/lib/tomoto.rb +12 -0
- data/lib/tomoto/ct.rb +11 -0
- data/lib/tomoto/hdp.rb +11 -0
- data/lib/tomoto/lda.rb +67 -0
- data/lib/tomoto/version.rb +3 -0
- data/vendor/EigenRand/EigenRand/Core.h +1139 -0
- data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
- data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
- data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
- data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
- data/vendor/EigenRand/EigenRand/EigenRand +19 -0
- data/vendor/EigenRand/EigenRand/Macro.h +24 -0
- data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
- data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
- data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
- data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
- data/vendor/EigenRand/EigenRand/doc.h +220 -0
- data/vendor/EigenRand/LICENSE +21 -0
- data/vendor/EigenRand/README.md +288 -0
- data/vendor/eigen/COPYING.BSD +26 -0
- data/vendor/eigen/COPYING.GPL +674 -0
- data/vendor/eigen/COPYING.LGPL +502 -0
- data/vendor/eigen/COPYING.MINPACK +52 -0
- data/vendor/eigen/COPYING.MPL2 +373 -0
- data/vendor/eigen/COPYING.README +18 -0
- data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
- data/vendor/eigen/Eigen/Cholesky +46 -0
- data/vendor/eigen/Eigen/CholmodSupport +48 -0
- data/vendor/eigen/Eigen/Core +537 -0
- data/vendor/eigen/Eigen/Dense +7 -0
- data/vendor/eigen/Eigen/Eigen +2 -0
- data/vendor/eigen/Eigen/Eigenvalues +61 -0
- data/vendor/eigen/Eigen/Geometry +62 -0
- data/vendor/eigen/Eigen/Householder +30 -0
- data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
- data/vendor/eigen/Eigen/Jacobi +33 -0
- data/vendor/eigen/Eigen/LU +50 -0
- data/vendor/eigen/Eigen/MetisSupport +35 -0
- data/vendor/eigen/Eigen/OrderingMethods +73 -0
- data/vendor/eigen/Eigen/PaStiXSupport +48 -0
- data/vendor/eigen/Eigen/PardisoSupport +35 -0
- data/vendor/eigen/Eigen/QR +51 -0
- data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
- data/vendor/eigen/Eigen/SPQRSupport +34 -0
- data/vendor/eigen/Eigen/SVD +51 -0
- data/vendor/eigen/Eigen/Sparse +36 -0
- data/vendor/eigen/Eigen/SparseCholesky +45 -0
- data/vendor/eigen/Eigen/SparseCore +69 -0
- data/vendor/eigen/Eigen/SparseLU +46 -0
- data/vendor/eigen/Eigen/SparseQR +37 -0
- data/vendor/eigen/Eigen/StdDeque +27 -0
- data/vendor/eigen/Eigen/StdList +26 -0
- data/vendor/eigen/Eigen/StdVector +27 -0
- data/vendor/eigen/Eigen/SuperLUSupport +64 -0
- data/vendor/eigen/Eigen/UmfPackSupport +40 -0
- data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
- data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
- data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
- data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
- data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
- data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
- data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
- data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
- data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
- data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
- data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
- data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
- data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
- data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
- data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
- data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
- data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
- data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
- data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
- data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
- data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
- data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
- data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
- data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
- data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
- data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
- data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
- data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
- data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
- data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
- data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
- data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
- data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
- data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
- data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
- data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
- data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
- data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
- data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
- data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
- data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
- data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
- data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
- data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
- data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
- data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
- data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
- data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
- data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
- data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
- data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
- data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
- data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
- data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
- data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
- data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
- data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
- data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
- data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
- data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
- data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
- data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
- data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
- data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
- data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
- data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
- data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
- data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
- data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
- data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
- data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
- data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
- data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
- data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
- data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
- data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
- data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
- data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
- data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
- data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
- data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
- data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
- data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
- data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
- data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
- data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
- data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
- data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
- data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
- data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
- data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
- data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
- data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
- data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
- data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
- data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
- data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
- data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
- data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
- data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
- data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
- data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
- data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
- data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
- data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
- data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
- data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
- data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
- data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
- data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
- data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
- data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
- data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
- data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
- data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
- data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
- data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
- data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
- data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
- data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
- data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
- data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
- data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
- data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
- data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
- data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
- data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
- data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
- data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
- data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
- data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
- data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
- data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
- data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
- data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
- data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
- data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
- data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +126 -0
- data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
- data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
- data/vendor/eigen/Eigen/src/StlSupport/details.h +84 -0
- data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
- data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
- data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
- data/vendor/eigen/Eigen/src/misc/Kernel.h +79 -0
- data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
- data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
- data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
- data/vendor/eigen/Eigen/src/misc/lapacke.h +16291 -0
- data/vendor/eigen/Eigen/src/misc/lapacke_mangling.h +17 -0
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +332 -0
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
- data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
- data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
- data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +163 -0
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
- data/vendor/eigen/README.md +3 -0
- data/vendor/eigen/bench/README.txt +55 -0
- data/vendor/eigen/bench/btl/COPYING +340 -0
- data/vendor/eigen/bench/btl/README +154 -0
- data/vendor/eigen/bench/tensors/README +21 -0
- data/vendor/eigen/blas/README.txt +6 -0
- data/vendor/eigen/demos/mandelbrot/README +10 -0
- data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
- data/vendor/eigen/demos/opengl/README +13 -0
- data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
- data/vendor/eigen/unsupported/README.txt +50 -0
- data/vendor/tomotopy/LICENSE +21 -0
- data/vendor/tomotopy/README.kr.rst +375 -0
- data/vendor/tomotopy/README.rst +382 -0
- data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
- data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
- data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
- data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
- data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
- data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
- data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
- data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
- data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
- data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
- data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
- data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
- data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
- data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
- data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
- data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
- data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
- data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
- data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
- data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
- data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
- data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
- data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
- data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
- data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
- data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
- data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
- data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
- data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
- data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
- data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
- data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
- data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
- data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
- data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
- data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
- data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
- data/vendor/tomotopy/src/Utils/AliasMethod.hpp +169 -0
- data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
- data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
- data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
- data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
- data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
- data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
- data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
- data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
- data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
- data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
- data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
- data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
- data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
- data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
- data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
- data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
- data/vendor/tomotopy/src/Utils/exception.h +28 -0
- data/vendor/tomotopy/src/Utils/math.h +281 -0
- data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
- data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
- data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
- data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
- data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
- data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
- data/vendor/tomotopy/src/Utils/text.hpp +49 -0
- data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
- metadata +531 -0
@@ -0,0 +1,40 @@
|
|
1
|
+
#pragma once
|
2
|
+
#include "LDA.h"
|
3
|
+
|
4
|
+
namespace tomoto
|
5
|
+
{
|
6
|
+
template<TermWeight _tw>
|
7
|
+
struct DocumentHLDA : public DocumentLDA<_tw>
|
8
|
+
{
|
9
|
+
using BaseDocument = DocumentLDA<_tw>;
|
10
|
+
using WeightType = typename DocumentLDA<_tw>::WeightType;
|
11
|
+
using DocumentLDA<_tw>::DocumentLDA;
|
12
|
+
|
13
|
+
// numByTopic indicates numByLevel in HLDAModel.
|
14
|
+
// Zs indicates level in HLDAModel.
|
15
|
+
std::vector<int32_t> path;
|
16
|
+
|
17
|
+
template<typename _TopicModel> void update(WeightType* ptr, const _TopicModel& mdl);
|
18
|
+
|
19
|
+
DEFINE_SERIALIZER_AFTER_BASE_WITH_VERSION(BaseDocument, 0, path);
|
20
|
+
DEFINE_TAGGED_SERIALIZER_AFTER_BASE_WITH_VERSION(BaseDocument, 1, 0x00010001, path);
|
21
|
+
};
|
22
|
+
|
23
|
+
class IHLDAModel : public ILDAModel
|
24
|
+
{
|
25
|
+
public:
|
26
|
+
using DefaultDocType = DocumentHLDA<TermWeight::one>;
|
27
|
+
static IHLDAModel* create(TermWeight _weight, size_t levelDepth = 1,
|
28
|
+
Float alpha = 0.1, Float eta = 0.01, Float gamma = 0.1, size_t seed = std::random_device{}(),
|
29
|
+
bool scalarRng = false);
|
30
|
+
|
31
|
+
virtual Float getGamma() const = 0;
|
32
|
+
virtual size_t getLiveK() const = 0;
|
33
|
+
virtual size_t getLevelDepth() const = 0;
|
34
|
+
virtual bool isLiveTopic(Tid tid) const = 0;
|
35
|
+
virtual size_t getNumDocsOfTopic(Tid tid) const = 0;
|
36
|
+
virtual size_t getLevelOfTopic(Tid tid) const = 0;
|
37
|
+
virtual size_t getParentTopicId(Tid tid) const = 0;
|
38
|
+
virtual std::vector<uint32_t> getChildTopicId(Tid tid) const = 0;
|
39
|
+
};
|
40
|
+
}
|
@@ -0,0 +1,13 @@
|
|
1
|
+
#include "HLDAModel.hpp"
|
2
|
+
|
3
|
+
namespace tomoto
|
4
|
+
{
|
5
|
+
/*template class HLDAModel<TermWeight::one>;
|
6
|
+
template class HLDAModel<TermWeight::idf>;
|
7
|
+
template class HLDAModel<TermWeight::pmi>;*/
|
8
|
+
|
9
|
+
IHLDAModel* IHLDAModel::create(TermWeight _weight, size_t levelDepth, Float _alpha, Float _eta, Float _gamma, size_t seed, bool scalarRng)
|
10
|
+
{
|
11
|
+
TMT_SWITCH_TW(_weight, scalarRng, HLDAModel, levelDepth, _alpha, _eta, _gamma, seed);
|
12
|
+
}
|
13
|
+
}
|
@@ -0,0 +1,681 @@
|
|
1
|
+
#pragma once
|
2
|
+
#include "LDAModel.hpp"
|
3
|
+
#include "HLDA.h"
|
4
|
+
|
5
|
+
/*
|
6
|
+
Implementation of hLDA using Gibbs sampling by bab2min
|
7
|
+
|
8
|
+
* Griffiths, T. L., Jordan, M. I., Tenenbaum, J. B., & Blei, D. M. (2004). Hierarchical topic models and the nested Chinese restaurant process. In Advances in neural information processing systems (pp. 17-24).
|
9
|
+
*/
|
10
|
+
|
11
|
+
namespace tomoto
|
12
|
+
{
|
13
|
+
namespace detail
|
14
|
+
{
|
15
|
+
struct NCRPNode
|
16
|
+
{
|
17
|
+
int32_t numCustomers = 0, level = 0;
|
18
|
+
int32_t parent = 0, sibling = 0, child = 0;
|
19
|
+
|
20
|
+
DEFINE_SERIALIZER(numCustomers, level, parent, sibling, child);
|
21
|
+
|
22
|
+
NCRPNode* getParent() const
|
23
|
+
{
|
24
|
+
if (!parent) return nullptr;
|
25
|
+
return (NCRPNode*)(this + parent);
|
26
|
+
}
|
27
|
+
|
28
|
+
NCRPNode* getSibling() const
|
29
|
+
{
|
30
|
+
if (!sibling) return nullptr;
|
31
|
+
return (NCRPNode*)(this + sibling);
|
32
|
+
}
|
33
|
+
|
34
|
+
NCRPNode* getChild() const
|
35
|
+
{
|
36
|
+
if (!child) return nullptr;
|
37
|
+
return (NCRPNode*)(this + child);
|
38
|
+
}
|
39
|
+
|
40
|
+
void setSibling(NCRPNode* node)
|
41
|
+
{
|
42
|
+
sibling = node ? (node - this) : 0;
|
43
|
+
}
|
44
|
+
|
45
|
+
NCRPNode* addChild(NCRPNode* newChild)
|
46
|
+
{
|
47
|
+
auto* orgChild = getChild();
|
48
|
+
child = newChild - this;
|
49
|
+
newChild->parent = this - newChild;
|
50
|
+
newChild->setSibling(orgChild);
|
51
|
+
return newChild;
|
52
|
+
}
|
53
|
+
|
54
|
+
void removeChild(NCRPNode* del)
|
55
|
+
{
|
56
|
+
NCRPNode* prev = getChild();
|
57
|
+
if (prev == del)
|
58
|
+
{
|
59
|
+
child = del->getSibling() ? del->getSibling() - this : 0;
|
60
|
+
return;
|
61
|
+
}
|
62
|
+
|
63
|
+
for (NCRPNode* node = prev->getSibling(); node; node = node->getSibling())
|
64
|
+
{
|
65
|
+
if (node == del)
|
66
|
+
{
|
67
|
+
prev->setSibling(node->getSibling());
|
68
|
+
return;
|
69
|
+
}
|
70
|
+
prev = node;
|
71
|
+
}
|
72
|
+
|
73
|
+
throw std::runtime_error{ "Cannot find the child" };
|
74
|
+
}
|
75
|
+
|
76
|
+
operator bool() const
|
77
|
+
{
|
78
|
+
return numCustomers || level;
|
79
|
+
}
|
80
|
+
|
81
|
+
bool isLeaf(int totLevel) const
|
82
|
+
{
|
83
|
+
return level == totLevel - 1;
|
84
|
+
}
|
85
|
+
|
86
|
+
void dropPathOne()
|
87
|
+
{
|
88
|
+
NCRPNode* node = this;
|
89
|
+
size_t _level = this->level;
|
90
|
+
for (size_t i = 0; i <= _level; ++i)
|
91
|
+
{
|
92
|
+
if (!--node->numCustomers)
|
93
|
+
{
|
94
|
+
node->level = 0;
|
95
|
+
node->getParent()->removeChild(node);
|
96
|
+
}
|
97
|
+
node = node->getParent();
|
98
|
+
}
|
99
|
+
}
|
100
|
+
|
101
|
+
void addPathOne()
|
102
|
+
{
|
103
|
+
NCRPNode* node = this;
|
104
|
+
for (size_t i = 0; i <= level; ++i)
|
105
|
+
{
|
106
|
+
++node->numCustomers;
|
107
|
+
node = node->getParent();
|
108
|
+
}
|
109
|
+
}
|
110
|
+
};
|
111
|
+
|
112
|
+
struct NodeTrees
|
113
|
+
{
|
114
|
+
static constexpr size_t blockSize = 8;
|
115
|
+
std::vector<NCRPNode> nodes;
|
116
|
+
std::vector<uint8_t> levelBlocks;
|
117
|
+
Eigen::Matrix<Float, -1, 1> nodeLikelihoods; //
|
118
|
+
Eigen::Matrix<Float, -1, 1> nodeWLikelihoods; //
|
119
|
+
|
120
|
+
DEFINE_SERIALIZER(nodes, levelBlocks);
|
121
|
+
|
122
|
+
template<bool _MakeNewPath = true>
|
123
|
+
void calcNodeLikelihood(Float gamma, size_t levelDepth)
|
124
|
+
{
|
125
|
+
nodeLikelihoods.resize(nodes.size());
|
126
|
+
nodeLikelihoods.array() = -INFINITY;
|
127
|
+
updateNodeLikelihood<_MakeNewPath>(gamma, levelDepth, &nodes[0]);
|
128
|
+
}
|
129
|
+
|
130
|
+
template<bool _MakeNewPath = true>
|
131
|
+
void updateNodeLikelihood(Float gamma, size_t levelDepth, NCRPNode* node, Float weight = 0)
|
132
|
+
{
|
133
|
+
size_t idx = node - nodes.data();
|
134
|
+
const Float pNewNode = _MakeNewPath ? log(gamma / (node->numCustomers + gamma)) : -INFINITY;
|
135
|
+
nodeLikelihoods[idx] = weight + ((node->level < levelDepth - 1) ? pNewNode : 0);
|
136
|
+
for(auto * child = node->getChild(); child; child = child->getSibling())
|
137
|
+
{
|
138
|
+
updateNodeLikelihood(gamma, levelDepth, child, weight + log(child->numCustomers / (node->numCustomers + gamma)));
|
139
|
+
}
|
140
|
+
}
|
141
|
+
|
142
|
+
void markEmptyBlocks()
|
143
|
+
{
|
144
|
+
for (size_t b = 0; b < levelBlocks.size(); ++b)
|
145
|
+
{
|
146
|
+
if (!levelBlocks[b]) continue;
|
147
|
+
bool filled = std::any_of(nodes.begin() + (b + 1) * blockSize, nodes.begin() + (b + 2) * blockSize, [](const NCRPNode& node)
|
148
|
+
{
|
149
|
+
return !!node;
|
150
|
+
});
|
151
|
+
if (!filled) levelBlocks[b] = 0;
|
152
|
+
}
|
153
|
+
}
|
154
|
+
|
155
|
+
NCRPNode* newNode(size_t level)
|
156
|
+
{
|
157
|
+
for (size_t b = 0; b < levelBlocks.size(); ++b)
|
158
|
+
{
|
159
|
+
if (levelBlocks[b] != level) continue;
|
160
|
+
for (size_t i = 0; i < blockSize; ++i)
|
161
|
+
{
|
162
|
+
const size_t id = blockSize + i + b * blockSize;
|
163
|
+
if (!nodes[id]) return &nodes[id];
|
164
|
+
}
|
165
|
+
}
|
166
|
+
|
167
|
+
for (size_t b = 0; b < levelBlocks.size(); ++b)
|
168
|
+
{
|
169
|
+
if (!levelBlocks[b])
|
170
|
+
{
|
171
|
+
levelBlocks[b] = level;
|
172
|
+
return &nodes[blockSize + b * blockSize];
|
173
|
+
}
|
174
|
+
}
|
175
|
+
nodes.insert(nodes.end(), blockSize, NCRPNode{});
|
176
|
+
levelBlocks.emplace_back(level);
|
177
|
+
return &nodes[nodes.size() - blockSize];
|
178
|
+
}
|
179
|
+
|
180
|
+
template<TermWeight _tw>
|
181
|
+
void calcWordLikelihood(Float eta, size_t realV, size_t levelDepth, ThreadPool* pool,
|
182
|
+
const DocumentHLDA<_tw>& doc, const std::vector<Float>& newTopicWeights,
|
183
|
+
const ModelStateLDA<_tw>& ld)
|
184
|
+
{
|
185
|
+
nodeWLikelihoods.resize(nodes.size());
|
186
|
+
nodeWLikelihoods.setZero();
|
187
|
+
std::vector<std::future<void>> futures;
|
188
|
+
futures.reserve(levelBlocks.size());
|
189
|
+
|
190
|
+
auto calc = [this, eta, realV, &doc, &ld](size_t threadId, size_t b)
|
191
|
+
{
|
192
|
+
Float cnt = 0;
|
193
|
+
Vid prevWord = -1;
|
194
|
+
const size_t bStart = blockSize + b * blockSize;
|
195
|
+
for (size_t w = 0; w < doc.words.size(); ++w)
|
196
|
+
{
|
197
|
+
if (doc.words[w] >= realV) break;
|
198
|
+
if (doc.Zs[w] != levelBlocks[b]) continue;
|
199
|
+
if (doc.words[w] != prevWord)
|
200
|
+
{
|
201
|
+
if (prevWord != (Vid)-1)
|
202
|
+
{
|
203
|
+
if (cnt == 1) nodeWLikelihoods.segment(bStart, blockSize).array()
|
204
|
+
+= (ld.numByTopicWord.col(prevWord).segment(bStart, blockSize).array().template cast<Float>() + eta).log();
|
205
|
+
else nodeWLikelihoods.segment(bStart, blockSize).array()
|
206
|
+
+= Eigen::lgamma_subt(ld.numByTopicWord.col(prevWord).segment(bStart, blockSize).array().template cast<Float>() + eta, cnt);
|
207
|
+
}
|
208
|
+
cnt = 0;
|
209
|
+
prevWord = doc.words[w];
|
210
|
+
}
|
211
|
+
cnt += doc.getWordWeight(w);
|
212
|
+
}
|
213
|
+
if (prevWord != (Vid)-1)
|
214
|
+
{
|
215
|
+
if (cnt == 1) nodeWLikelihoods.segment(bStart, blockSize).array()
|
216
|
+
+= (ld.numByTopicWord.col(prevWord).segment(bStart, blockSize).array().template cast<Float>() + eta).log();
|
217
|
+
else nodeWLikelihoods.segment(bStart, blockSize).array()
|
218
|
+
+= Eigen::lgamma_subt(ld.numByTopicWord.col(prevWord).segment(bStart, blockSize).array().template cast<Float>() + eta, cnt);
|
219
|
+
}
|
220
|
+
nodeWLikelihoods.segment(bStart, blockSize).array()
|
221
|
+
-= Eigen::lgamma_subt(ld.numByTopic.segment(bStart, blockSize).array().template cast<Float>() + realV * eta, (Float)doc.numByTopic[levelBlocks[b]]);
|
222
|
+
};
|
223
|
+
|
224
|
+
// we elide the likelihood for root node because its weight applied to all path and can be seen as constant.
|
225
|
+
if (pool)
|
226
|
+
{
|
227
|
+
const size_t chStride = pool->getNumWorkers() * 8;
|
228
|
+
for (size_t ch = 0; ch < chStride; ++ch)
|
229
|
+
{
|
230
|
+
futures.emplace_back(pool->enqueue([&](size_t threadId, size_t bBegin, size_t bEnd)
|
231
|
+
{
|
232
|
+
for (size_t b = bBegin; b < bEnd; ++b)
|
233
|
+
{
|
234
|
+
if (!levelBlocks[b]) continue;
|
235
|
+
calc(threadId, b);
|
236
|
+
}
|
237
|
+
}, levelBlocks.size() * ch / chStride, levelBlocks.size() * (ch + 1) / chStride));
|
238
|
+
}
|
239
|
+
for (auto& f : futures) f.get();
|
240
|
+
}
|
241
|
+
else
|
242
|
+
{
|
243
|
+
for (size_t b = 0; b < levelBlocks.size(); ++b)
|
244
|
+
{
|
245
|
+
if (!levelBlocks[b]) continue;
|
246
|
+
calc(0, b);
|
247
|
+
}
|
248
|
+
}
|
249
|
+
|
250
|
+
updateWordLikelihood<_tw>(eta, realV, levelDepth, doc, newTopicWeights, &nodes[0]);
|
251
|
+
}
|
252
|
+
|
253
|
+
template<TermWeight _tw>
|
254
|
+
void updateWordLikelihood(Float eta, size_t realV, size_t levelDepth,
|
255
|
+
const DocumentHLDA<_tw>& doc, const std::vector<Float>& newTopicWeights,
|
256
|
+
detail::NCRPNode* node, Float weight = 0)
|
257
|
+
{
|
258
|
+
size_t idx = node - nodes.data();
|
259
|
+
weight += nodeWLikelihoods[idx];
|
260
|
+
nodeLikelihoods[idx] += weight;
|
261
|
+
for (size_t l = node->level + 1; l < levelDepth; ++l)
|
262
|
+
{
|
263
|
+
nodeLikelihoods[idx] += newTopicWeights[l - 1];
|
264
|
+
}
|
265
|
+
for (auto* child = node->getChild(); child; child = child->getSibling())
|
266
|
+
{
|
267
|
+
updateWordLikelihood<_tw>(eta, realV, levelDepth, doc, newTopicWeights, child, weight);
|
268
|
+
}
|
269
|
+
}
|
270
|
+
|
271
|
+
template<TermWeight _tw>
|
272
|
+
size_t generateLeafNode(size_t idx, size_t levelDepth,
|
273
|
+
ModelStateLDA<_tw>& ld)
|
274
|
+
{
|
275
|
+
for (size_t l = nodes[idx].level + 1; l < levelDepth; ++l)
|
276
|
+
{
|
277
|
+
auto* nnode = newNode(l);
|
278
|
+
idx = nodes[idx].addChild(nnode) - nodes.data();
|
279
|
+
nodes[idx].level = l;
|
280
|
+
}
|
281
|
+
|
282
|
+
if (ld.numByTopic.size() < nodes.size())
|
283
|
+
{
|
284
|
+
size_t oldSize = ld.numByTopic.rows();
|
285
|
+
size_t newSize = std::max(nodes.size(), ((oldSize + oldSize / 2 + 7) / 8) * 8);
|
286
|
+
ld.numByTopic.conservativeResize(newSize);
|
287
|
+
ld.numByTopicWord.conservativeResize(newSize, Eigen::NoChange);
|
288
|
+
ld.numByTopic.segment(oldSize, newSize - oldSize).setZero();
|
289
|
+
ld.numByTopicWord.block(oldSize, 0, newSize - oldSize, ld.numByTopicWord.cols()).setZero();
|
290
|
+
}
|
291
|
+
return idx;
|
292
|
+
}
|
293
|
+
};
|
294
|
+
}
|
295
|
+
|
296
|
+
template<TermWeight _tw>
|
297
|
+
struct ModelStateHLDA : public ModelStateLDA<_tw>
|
298
|
+
{
|
299
|
+
std::shared_ptr<detail::NodeTrees> nt;
|
300
|
+
|
301
|
+
void serializerRead(std::istream& istr)
|
302
|
+
{
|
303
|
+
ModelStateLDA<_tw>::serializerRead(istr);
|
304
|
+
nt = std::make_shared<detail::NodeTrees>();
|
305
|
+
nt->serializerRead(istr);
|
306
|
+
}
|
307
|
+
|
308
|
+
void serializerWrite(std::ostream& ostr) const
|
309
|
+
{
|
310
|
+
ModelStateLDA<_tw>::serializerWrite(ostr);
|
311
|
+
nt->serializerWrite(ostr);
|
312
|
+
}
|
313
|
+
};
|
314
|
+
|
315
|
+
template<TermWeight _tw, typename _RandGen,
|
316
|
+
typename _Interface = IHLDAModel,
|
317
|
+
typename _Derived = void,
|
318
|
+
typename _DocType = DocumentHLDA<_tw>,
|
319
|
+
typename _ModelState = ModelStateHLDA<_tw>>
|
320
|
+
class HLDAModel : public LDAModel<_tw, _RandGen, flags::shared_state, _Interface,
|
321
|
+
typename std::conditional<std::is_same<_Derived, void>::value, HLDAModel<_tw, _RandGen>, _Derived>::type,
|
322
|
+
_DocType, _ModelState>
|
323
|
+
{
|
324
|
+
protected:
|
325
|
+
using DerivedClass = typename std::conditional<std::is_same<_Derived, void>::value, HLDAModel<_tw, _RandGen>, _Derived>::type;
|
326
|
+
using BaseClass = LDAModel<_tw, _RandGen, flags::shared_state, _Interface, DerivedClass, _DocType, _ModelState>;
|
327
|
+
friend BaseClass;
|
328
|
+
friend typename BaseClass::BaseClass;
|
329
|
+
using WeightType = typename BaseClass::WeightType;
|
330
|
+
|
331
|
+
static constexpr char TMID[] = "hLDA";
|
332
|
+
|
333
|
+
Float gamma;
|
334
|
+
|
335
|
+
void optimizeParameters(ThreadPool& pool, _ModelState* localData, _RandGen* rgs)
|
336
|
+
{
|
337
|
+
// for alphas
|
338
|
+
BaseClass::optimizeParameters(pool, localData, rgs);
|
339
|
+
// to do: gamma
|
340
|
+
|
341
|
+
}
|
342
|
+
|
343
|
+
// Words of all documents should be sorted by ascending order.
|
344
|
+
template<bool _MakeNewPath = true>
|
345
|
+
void samplePathes(_DocType& doc, ThreadPool* pool, _ModelState& ld, _RandGen& rgs) const
|
346
|
+
{
|
347
|
+
if(_MakeNewPath) ld.nt->nodes[doc.path.back()].dropPathOne();
|
348
|
+
ld.nt->template calcNodeLikelihood<_MakeNewPath>(gamma, this->K);
|
349
|
+
|
350
|
+
std::vector<Float> newTopicWeights(this->K - 1);
|
351
|
+
std::vector<WeightType> cntByLevel(this->K);
|
352
|
+
Vid prevWord = -1;
|
353
|
+
for (size_t w = 0; w < doc.words.size(); ++w)
|
354
|
+
{
|
355
|
+
if (doc.words[w] >= this->realV) break;
|
356
|
+
addWordToOnlyLocal<-1>(ld, doc, w, doc.words[w], doc.Zs[w]);
|
357
|
+
|
358
|
+
if (_MakeNewPath)
|
359
|
+
{
|
360
|
+
if (doc.words[w] != prevWord)
|
361
|
+
{
|
362
|
+
std::fill(cntByLevel.begin(), cntByLevel.end(), 0);
|
363
|
+
prevWord = doc.words[w];
|
364
|
+
}
|
365
|
+
size_t level = doc.Zs[w];
|
366
|
+
if (level)
|
367
|
+
{
|
368
|
+
newTopicWeights[level - 1] += log(this->eta + cntByLevel[level]);
|
369
|
+
cntByLevel[level] += doc.getWordWeight(w);
|
370
|
+
}
|
371
|
+
}
|
372
|
+
}
|
373
|
+
|
374
|
+
if (_MakeNewPath)
|
375
|
+
{
|
376
|
+
for (size_t l = 1; l < this->K; ++l)
|
377
|
+
{
|
378
|
+
newTopicWeights[l - 1] -= math::lgammaT(doc.numByTopic[l] + this->realV * this->eta) - math::lgammaT(this->realV * this->eta);
|
379
|
+
}
|
380
|
+
}
|
381
|
+
|
382
|
+
ld.nt->template calcWordLikelihood<_tw>(this->eta, this->realV, this->K, pool, doc, newTopicWeights, ld);
|
383
|
+
|
384
|
+
ld.nt->nodeLikelihoods = (ld.nt->nodeLikelihoods.array() - ld.nt->nodeLikelihoods.maxCoeff()).exp();
|
385
|
+
sample::prefixSum(ld.nt->nodeLikelihoods.data(), ld.nt->nodeLikelihoods.size());
|
386
|
+
size_t newPath = sample::sampleFromDiscreteAcc(ld.nt->nodeLikelihoods.data(),
|
387
|
+
ld.nt->nodeLikelihoods.data() + ld.nt->nodeLikelihoods.size(), rgs);
|
388
|
+
|
389
|
+
if(_MakeNewPath) newPath = ld.nt->template generateLeafNode<_tw>(newPath, this->K, ld);
|
390
|
+
doc.path.back() = newPath;
|
391
|
+
for (size_t l = this->K - 2; l > 0; --l)
|
392
|
+
{
|
393
|
+
doc.path[l] = doc.path[l + 1] + ld.nt->nodes[doc.path[l + 1]].parent;
|
394
|
+
}
|
395
|
+
|
396
|
+
for (size_t w = 0; w < doc.words.size(); ++w)
|
397
|
+
{
|
398
|
+
if (doc.words[w] >= this->realV) break;
|
399
|
+
addWordToOnlyLocal<1>(ld, doc, w, doc.words[w], doc.Zs[w]);
|
400
|
+
}
|
401
|
+
if (_MakeNewPath) ld.nt->nodes[doc.path.back()].addPathOne();
|
402
|
+
}
|
403
|
+
|
404
|
+
template<int _inc>
|
405
|
+
inline void addWordToOnlyLocal(_ModelState& ld, _DocType& doc, uint32_t pid, Vid vid, Tid level) const
|
406
|
+
{
|
407
|
+
assert(vid < this->realV);
|
408
|
+
constexpr bool _dec = _inc < 0 && _tw != TermWeight::one;
|
409
|
+
auto weight = doc.getWordWeight(pid);
|
410
|
+
|
411
|
+
updateCnt<_dec>(ld.numByTopic[doc.path[level]], _inc * weight);
|
412
|
+
updateCnt<_dec>(ld.numByTopicWord(doc.path[level], vid), _inc * weight);
|
413
|
+
}
|
414
|
+
|
415
|
+
template<int _inc>
|
416
|
+
inline void addWordTo(_ModelState& ld, _DocType& doc, uint32_t pid, Vid vid, Tid level) const
|
417
|
+
{
|
418
|
+
assert(vid < this->realV);
|
419
|
+
constexpr bool _dec = _inc < 0 && _tw != TermWeight::one;
|
420
|
+
auto weight = doc.getWordWeight(pid);
|
421
|
+
|
422
|
+
updateCnt<_dec>(doc.numByTopic[level], _inc * weight);
|
423
|
+
addWordToOnlyLocal<_inc>(ld, doc, pid, vid, level);
|
424
|
+
}
|
425
|
+
|
426
|
+
template<bool _asymEta>
|
427
|
+
Float* getZLikelihoods(_ModelState& ld, const _DocType& doc, size_t docId, size_t vid) const
|
428
|
+
{
|
429
|
+
const size_t V = this->realV;
|
430
|
+
assert(vid < V);
|
431
|
+
auto& zLikelihood = ld.zLikelihood;
|
432
|
+
zLikelihood = (doc.numByTopic.array().template cast<Float>() + this->alphas.array());
|
433
|
+
for (size_t l = 0; l < this->K; ++l)
|
434
|
+
{
|
435
|
+
zLikelihood[l] *= (ld.numByTopicWord(doc.path[l], vid) + this->eta)
|
436
|
+
/ (ld.numByTopic(doc.path[l]) + V * this->eta);
|
437
|
+
}
|
438
|
+
sample::prefixSum(zLikelihood.data(), zLikelihood.size());
|
439
|
+
return &zLikelihood[0];
|
440
|
+
}
|
441
|
+
|
442
|
+
void sampleTopics(_DocType& doc, size_t docId, _ModelState& ld, _RandGen& rgs) const
|
443
|
+
{
|
444
|
+
for (size_t w = 0; w < doc.words.size(); ++w)
|
445
|
+
{
|
446
|
+
if (doc.words[w] >= this->realV) continue;
|
447
|
+
addWordTo<-1>(ld, doc, w, doc.words[w], doc.Zs[w]);
|
448
|
+
Float* dist;
|
449
|
+
if (this->etaByTopicWord.size())
|
450
|
+
{
|
451
|
+
THROW_ERROR_WITH_INFO(exception::Unimplemented, "Unimplemented features");
|
452
|
+
}
|
453
|
+
else
|
454
|
+
{
|
455
|
+
dist = static_cast<const DerivedClass*>(this)->template
|
456
|
+
getZLikelihoods<false>(ld, doc, docId, doc.words[w]);
|
457
|
+
}
|
458
|
+
doc.Zs[w] = sample::sampleFromDiscreteAcc(dist, dist + this->K, rgs);
|
459
|
+
addWordTo<1>(ld, doc, w, doc.words[w], doc.Zs[w]);
|
460
|
+
}
|
461
|
+
}
|
462
|
+
|
463
|
+
template<ParallelScheme _ps, bool _infer, typename _ExtraDocData>
|
464
|
+
void sampleDocument(_DocType& doc, const _ExtraDocData& edd, size_t docId, _ModelState& ld, _RandGen& rgs, size_t iterationCnt, size_t partitionId = 0) const
|
465
|
+
{
|
466
|
+
sampleTopics(doc, docId, ld, rgs);
|
467
|
+
}
|
468
|
+
|
469
|
+
template<typename _DocIter>
|
470
|
+
void sampleGlobalLevel(ThreadPool* pool, _ModelState* localData, _RandGen* rgs, _DocIter first, _DocIter last)
|
471
|
+
{
|
472
|
+
for (auto doc = first; doc != last; ++doc)
|
473
|
+
{
|
474
|
+
samplePathes<>(*doc, pool, *localData, rgs[0]);
|
475
|
+
}
|
476
|
+
localData->nt->markEmptyBlocks();
|
477
|
+
}
|
478
|
+
|
479
|
+
template<typename _DocIter>
|
480
|
+
void sampleGlobalLevel(ThreadPool* pool, _ModelState* localData, _RandGen* rgs, _DocIter first, _DocIter last) const
|
481
|
+
{
|
482
|
+
for (auto doc = first; doc != last; ++doc)
|
483
|
+
{
|
484
|
+
samplePathes<false>(*doc, pool, *localData, rgs[0]);
|
485
|
+
}
|
486
|
+
}
|
487
|
+
|
488
|
+
template<typename _DocIter>
|
489
|
+
double getLLDocs(_DocIter _first, _DocIter _last) const
|
490
|
+
{
|
491
|
+
double ll = 0;
|
492
|
+
auto lgammaAlpha = math::lgammaT(this->alpha);
|
493
|
+
for (; _first != _last; ++_first)
|
494
|
+
{
|
495
|
+
auto& doc = *_first;
|
496
|
+
// doc-path distribution
|
497
|
+
for (Tid l = 1; l < this->K; ++l)
|
498
|
+
{
|
499
|
+
ll += log(this->globalState.nt->nodes[doc.path[l]].numCustomers / (this->globalState.nt->nodes[doc.path[l - 1]].numCustomers + gamma));
|
500
|
+
}
|
501
|
+
|
502
|
+
// doc-level distribution
|
503
|
+
ll -= math::lgammaT(doc.getSumWordWeight() + this->alpha * this->K);
|
504
|
+
for (Tid l = 0; l < this->K; ++l)
|
505
|
+
{
|
506
|
+
ll += math::lgammaT(doc.numByTopic[l] + this->alpha) - lgammaAlpha;
|
507
|
+
}
|
508
|
+
}
|
509
|
+
ll += math::lgammaT(this->alpha * this->K) * std::distance(_first, _last);
|
510
|
+
return ll;
|
511
|
+
}
|
512
|
+
|
513
|
+
double getLLRest(const _ModelState& ld) const
|
514
|
+
{
|
515
|
+
double ll = 0;
|
516
|
+
const size_t V = this->realV;
|
517
|
+
const size_t K = ld.nt->nodes.size();
|
518
|
+
size_t liveK = 0;
|
519
|
+
// topic-word distribution
|
520
|
+
auto lgammaEta = math::lgammaT(this->eta);
|
521
|
+
for (Tid k = 0; k < K; ++k)
|
522
|
+
{
|
523
|
+
if (!ld.nt->nodes[k]) continue;
|
524
|
+
++liveK;
|
525
|
+
ll -= math::lgammaT(ld.numByTopic[k] + V * this->eta);
|
526
|
+
for (Vid v = 0; v < V; ++v)
|
527
|
+
{
|
528
|
+
if (!ld.numByTopicWord(k, v)) continue;
|
529
|
+
ll += math::lgammaT(ld.numByTopicWord(k, v) + this->eta) - lgammaEta;
|
530
|
+
}
|
531
|
+
}
|
532
|
+
ll += math::lgammaT(V*this->eta) * liveK;
|
533
|
+
return ll;
|
534
|
+
}
|
535
|
+
|
536
|
+
void initGlobalState(bool initDocs)
|
537
|
+
{
|
538
|
+
const size_t V = this->realV;
|
539
|
+
if (initDocs)
|
540
|
+
{
|
541
|
+
this->globalState.numByTopic = Eigen::Matrix<WeightType, -1, 1>::Zero(this->K);
|
542
|
+
this->globalState.numByTopicWord = Eigen::Matrix<WeightType, -1, -1>::Zero(this->K, V);
|
543
|
+
this->globalState.nt->nodes.resize(detail::NodeTrees::blockSize);
|
544
|
+
}
|
545
|
+
}
|
546
|
+
|
547
|
+
void prepareDoc(_DocType& doc, size_t docId, size_t wordSize) const
|
548
|
+
{
|
549
|
+
sortAndWriteOrder(doc.words, doc.wOrder);
|
550
|
+
doc.numByTopic.init(nullptr, this->K);
|
551
|
+
doc.Zs = tvector<Tid>(wordSize);
|
552
|
+
doc.path.resize(this->K);
|
553
|
+
for (size_t l = 0; l < this->K; ++l) doc.path[l] = l;
|
554
|
+
|
555
|
+
if (_tw != TermWeight::one) doc.wordWeights.resize(wordSize);
|
556
|
+
}
|
557
|
+
|
558
|
+
template<bool _Infer>
|
559
|
+
void updateStateWithDoc(typename BaseClass::Generator& g, _ModelState& ld, _RandGen& rgs, _DocType& doc, size_t i) const
|
560
|
+
{
|
561
|
+
if (i == 0)
|
562
|
+
{
|
563
|
+
ld.nt->template calcNodeLikelihood<!_Infer>(gamma, this->K);
|
564
|
+
ld.nt->nodeLikelihoods = (ld.nt->nodeLikelihoods.array() - ld.nt->nodeLikelihoods.maxCoeff()).exp();
|
565
|
+
sample::prefixSum(ld.nt->nodeLikelihoods.data(), ld.nt->nodeLikelihoods.size());
|
566
|
+
size_t newPath = sample::sampleFromDiscreteAcc(ld.nt->nodeLikelihoods.data(),
|
567
|
+
ld.nt->nodeLikelihoods.data() + ld.nt->nodeLikelihoods.size(), rgs);
|
568
|
+
|
569
|
+
if (!_Infer) newPath = ld.nt->generateLeafNode(newPath, this->K, ld);
|
570
|
+
doc.path.back() = newPath;
|
571
|
+
for (size_t l = this->K - 2; l > 0; --l)
|
572
|
+
{
|
573
|
+
doc.path[l] = doc.path[l + 1] + ld.nt->nodes[doc.path[l + 1]].parent;
|
574
|
+
}
|
575
|
+
|
576
|
+
if (!_Infer) ld.nt->nodes[doc.path.back()].addPathOne();
|
577
|
+
}
|
578
|
+
|
579
|
+
auto& z = doc.Zs[i];
|
580
|
+
auto w = doc.words[i];
|
581
|
+
z = g.theta(rgs);
|
582
|
+
addWordTo<1>(ld, doc, i, w, z);
|
583
|
+
}
|
584
|
+
|
585
|
+
std::vector<uint64_t> _getTopicsCount() const
|
586
|
+
{
|
587
|
+
std::vector<uint64_t> cnt(this->globalState.nt->nodes.size());
|
588
|
+
for (auto& doc : this->docs)
|
589
|
+
{
|
590
|
+
for (size_t i = 0; i < doc.Zs.size(); ++i)
|
591
|
+
{
|
592
|
+
if (doc.words[i] < this->realV) ++cnt[doc.path[doc.Zs[i]]];
|
593
|
+
}
|
594
|
+
}
|
595
|
+
return cnt;
|
596
|
+
}
|
597
|
+
|
598
|
+
public:
|
599
|
+
DEFINE_SERIALIZER_AFTER_BASE_WITH_VERSION(BaseClass, 0, gamma);
|
600
|
+
DEFINE_TAGGED_SERIALIZER_AFTER_BASE_WITH_VERSION(BaseClass, 1, 0x00010001, gamma);
|
601
|
+
|
602
|
+
HLDAModel(size_t _levelDepth = 4, Float _alpha = 0.1, Float _eta = 0.01, Float _gamma = 0.1, size_t _rg = std::random_device{}())
|
603
|
+
: BaseClass(_levelDepth, _alpha, _eta, _rg), gamma(_gamma)
|
604
|
+
{
|
605
|
+
if (_levelDepth == 0 || _levelDepth >= 0x80000000) THROW_ERROR_WITH_INFO(std::runtime_error, text::format("wrong levelDepth value (levelDepth = %zd)", _levelDepth));
|
606
|
+
if (_gamma <= 0) THROW_ERROR_WITH_INFO(std::runtime_error, text::format("wrong gamma value (gamma = %f)", _gamma));
|
607
|
+
this->globalState.nt = std::make_shared<detail::NodeTrees>();
|
608
|
+
}
|
609
|
+
|
610
|
+
size_t getLiveK() const override
|
611
|
+
{
|
612
|
+
return std::count_if(this->globalState.nt->nodes.begin(), this->globalState.nt->nodes.end(), [](const detail::NCRPNode& n)
|
613
|
+
{
|
614
|
+
return !!n;
|
615
|
+
});
|
616
|
+
}
|
617
|
+
|
618
|
+
size_t getK() const override
|
619
|
+
{
|
620
|
+
return this->globalState.nt->nodes.size();
|
621
|
+
}
|
622
|
+
|
623
|
+
size_t getLevelDepth() const override
|
624
|
+
{
|
625
|
+
return this->K;
|
626
|
+
}
|
627
|
+
|
628
|
+
GETTER(Gamma, Float, gamma);
|
629
|
+
|
630
|
+
bool isLiveTopic(Tid tid) const override
|
631
|
+
{
|
632
|
+
return this->globalState.nt->nodes[tid];
|
633
|
+
}
|
634
|
+
|
635
|
+
size_t getParentTopicId(Tid tid) const override
|
636
|
+
{
|
637
|
+
if (!isLiveTopic(tid)) return (size_t)-1;
|
638
|
+
return this->globalState.nt->nodes[tid].parent ? (tid + this->globalState.nt->nodes[tid].parent) : (size_t)-1;
|
639
|
+
}
|
640
|
+
|
641
|
+
size_t getNumDocsOfTopic(Tid tid) const override
|
642
|
+
{
|
643
|
+
if (!isLiveTopic(tid)) return 0;
|
644
|
+
return this->globalState.nt->nodes[tid].numCustomers;
|
645
|
+
}
|
646
|
+
|
647
|
+
size_t getLevelOfTopic(Tid tid) const override
|
648
|
+
{
|
649
|
+
if (!isLiveTopic(tid)) return (size_t)-1;
|
650
|
+
return this->globalState.nt->nodes[tid].level;
|
651
|
+
}
|
652
|
+
|
653
|
+
std::vector<uint32_t> getChildTopicId(Tid tid) const override
|
654
|
+
{
|
655
|
+
std::vector<uint32_t> ret;
|
656
|
+
if (!isLiveTopic(tid)) return ret;
|
657
|
+
for (auto* node = this->globalState.nt->nodes[tid].getChild(); node; node = node->getSibling())
|
658
|
+
{
|
659
|
+
ret.emplace_back(node - this->globalState.nt->nodes.data());
|
660
|
+
}
|
661
|
+
return ret;
|
662
|
+
}
|
663
|
+
|
664
|
+
void setWordPrior(const std::string& word, const std::vector<Float>& priors) override
|
665
|
+
{
|
666
|
+
THROW_ERROR_WITH_INFO(exception::Unimplemented, "HLDAModel doesn't provide setWordPrior function.");
|
667
|
+
}
|
668
|
+
};
|
669
|
+
|
670
|
+
template<TermWeight _tw>
|
671
|
+
template<typename _TopicModel>
|
672
|
+
inline void DocumentHLDA<_tw>::update(WeightType * ptr, const _TopicModel & mdl)
|
673
|
+
{
|
674
|
+
this->numByTopic.init(ptr, mdl.getLevelDepth());
|
675
|
+
for (size_t i = 0; i < this->Zs.size(); ++i)
|
676
|
+
{
|
677
|
+
if (this->words[i] >= mdl.getV()) continue;
|
678
|
+
this->numByTopic[this->Zs[i]] += _tw != TermWeight::one ? this->wordWeights[i] : 1;
|
679
|
+
}
|
680
|
+
}
|
681
|
+
}
|