tomoto 0.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +7 -0
- data/CHANGELOG.md +3 -0
- data/LICENSE.txt +22 -0
- data/README.md +123 -0
- data/ext/tomoto/ext.cpp +245 -0
- data/ext/tomoto/extconf.rb +28 -0
- data/lib/tomoto.rb +12 -0
- data/lib/tomoto/ct.rb +11 -0
- data/lib/tomoto/hdp.rb +11 -0
- data/lib/tomoto/lda.rb +67 -0
- data/lib/tomoto/version.rb +3 -0
- data/vendor/EigenRand/EigenRand/Core.h +1139 -0
- data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
- data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
- data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
- data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
- data/vendor/EigenRand/EigenRand/EigenRand +19 -0
- data/vendor/EigenRand/EigenRand/Macro.h +24 -0
- data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
- data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
- data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
- data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
- data/vendor/EigenRand/EigenRand/doc.h +220 -0
- data/vendor/EigenRand/LICENSE +21 -0
- data/vendor/EigenRand/README.md +288 -0
- data/vendor/eigen/COPYING.BSD +26 -0
- data/vendor/eigen/COPYING.GPL +674 -0
- data/vendor/eigen/COPYING.LGPL +502 -0
- data/vendor/eigen/COPYING.MINPACK +52 -0
- data/vendor/eigen/COPYING.MPL2 +373 -0
- data/vendor/eigen/COPYING.README +18 -0
- data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
- data/vendor/eigen/Eigen/Cholesky +46 -0
- data/vendor/eigen/Eigen/CholmodSupport +48 -0
- data/vendor/eigen/Eigen/Core +537 -0
- data/vendor/eigen/Eigen/Dense +7 -0
- data/vendor/eigen/Eigen/Eigen +2 -0
- data/vendor/eigen/Eigen/Eigenvalues +61 -0
- data/vendor/eigen/Eigen/Geometry +62 -0
- data/vendor/eigen/Eigen/Householder +30 -0
- data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
- data/vendor/eigen/Eigen/Jacobi +33 -0
- data/vendor/eigen/Eigen/LU +50 -0
- data/vendor/eigen/Eigen/MetisSupport +35 -0
- data/vendor/eigen/Eigen/OrderingMethods +73 -0
- data/vendor/eigen/Eigen/PaStiXSupport +48 -0
- data/vendor/eigen/Eigen/PardisoSupport +35 -0
- data/vendor/eigen/Eigen/QR +51 -0
- data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
- data/vendor/eigen/Eigen/SPQRSupport +34 -0
- data/vendor/eigen/Eigen/SVD +51 -0
- data/vendor/eigen/Eigen/Sparse +36 -0
- data/vendor/eigen/Eigen/SparseCholesky +45 -0
- data/vendor/eigen/Eigen/SparseCore +69 -0
- data/vendor/eigen/Eigen/SparseLU +46 -0
- data/vendor/eigen/Eigen/SparseQR +37 -0
- data/vendor/eigen/Eigen/StdDeque +27 -0
- data/vendor/eigen/Eigen/StdList +26 -0
- data/vendor/eigen/Eigen/StdVector +27 -0
- data/vendor/eigen/Eigen/SuperLUSupport +64 -0
- data/vendor/eigen/Eigen/UmfPackSupport +40 -0
- data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
- data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
- data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
- data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
- data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
- data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
- data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
- data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
- data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
- data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
- data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
- data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
- data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
- data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
- data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
- data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
- data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
- data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
- data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
- data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
- data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
- data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
- data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
- data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
- data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
- data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
- data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
- data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
- data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
- data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
- data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
- data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
- data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
- data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
- data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
- data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
- data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
- data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
- data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
- data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
- data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
- data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
- data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
- data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
- data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
- data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
- data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
- data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
- data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
- data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
- data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
- data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
- data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
- data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
- data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
- data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
- data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
- data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
- data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
- data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
- data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
- data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
- data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
- data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
- data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
- data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
- data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
- data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
- data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
- data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
- data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
- data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
- data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
- data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
- data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
- data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
- data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
- data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
- data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
- data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
- data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
- data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
- data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
- data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
- data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
- data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
- data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
- data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
- data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
- data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
- data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
- data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
- data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
- data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
- data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
- data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
- data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
- data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
- data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
- data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
- data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
- data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
- data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
- data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
- data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
- data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
- data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
- data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
- data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
- data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
- data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
- data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
- data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
- data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
- data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
- data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
- data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
- data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
- data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
- data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
- data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
- data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
- data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
- data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
- data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
- data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
- data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
- data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
- data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
- data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
- data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
- data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
- data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
- data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
- data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
- data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
- data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
- data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +126 -0
- data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
- data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
- data/vendor/eigen/Eigen/src/StlSupport/details.h +84 -0
- data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
- data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
- data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
- data/vendor/eigen/Eigen/src/misc/Kernel.h +79 -0
- data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
- data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
- data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
- data/vendor/eigen/Eigen/src/misc/lapacke.h +16291 -0
- data/vendor/eigen/Eigen/src/misc/lapacke_mangling.h +17 -0
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +332 -0
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
- data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
- data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
- data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +163 -0
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
- data/vendor/eigen/README.md +3 -0
- data/vendor/eigen/bench/README.txt +55 -0
- data/vendor/eigen/bench/btl/COPYING +340 -0
- data/vendor/eigen/bench/btl/README +154 -0
- data/vendor/eigen/bench/tensors/README +21 -0
- data/vendor/eigen/blas/README.txt +6 -0
- data/vendor/eigen/demos/mandelbrot/README +10 -0
- data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
- data/vendor/eigen/demos/opengl/README +13 -0
- data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
- data/vendor/eigen/unsupported/README.txt +50 -0
- data/vendor/tomotopy/LICENSE +21 -0
- data/vendor/tomotopy/README.kr.rst +375 -0
- data/vendor/tomotopy/README.rst +382 -0
- data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
- data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
- data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
- data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
- data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
- data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
- data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
- data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
- data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
- data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
- data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
- data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
- data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
- data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
- data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
- data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
- data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
- data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
- data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
- data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
- data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
- data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
- data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
- data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
- data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
- data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
- data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
- data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
- data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
- data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
- data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
- data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
- data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
- data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
- data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
- data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
- data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
- data/vendor/tomotopy/src/Utils/AliasMethod.hpp +169 -0
- data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
- data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
- data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
- data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
- data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
- data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
- data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
- data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
- data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
- data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
- data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
- data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
- data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
- data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
- data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
- data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
- data/vendor/tomotopy/src/Utils/exception.h +28 -0
- data/vendor/tomotopy/src/Utils/math.h +281 -0
- data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
- data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
- data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
- data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
- data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
- data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
- data/vendor/tomotopy/src/Utils/text.hpp +49 -0
- data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
- metadata +531 -0
@@ -0,0 +1,311 @@
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// This file is part of Eigen, a lightweight C++ template library
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// for linear algebra.
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//
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// Copyright (C) 2009-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
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//
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// This Source Code Form is subject to the terms of the Mozilla
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// Public License v. 2.0. If a copy of the MPL was not distributed
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// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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#ifndef EIGEN_GENERAL_MATRIX_MATRIX_TRIANGULAR_H
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#define EIGEN_GENERAL_MATRIX_MATRIX_TRIANGULAR_H
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namespace Eigen {
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template<typename Scalar, typename Index, int StorageOrder, int UpLo, bool ConjLhs, bool ConjRhs>
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struct selfadjoint_rank1_update;
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namespace internal {
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/**********************************************************************
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* This file implements a general A * B product while
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* evaluating only one triangular part of the product.
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* This is a more general version of self adjoint product (C += A A^T)
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* as the level 3 SYRK Blas routine.
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**********************************************************************/
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// forward declarations (defined at the end of this file)
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template<typename LhsScalar, typename RhsScalar, typename Index, int mr, int nr, bool ConjLhs, bool ConjRhs, int UpLo>
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struct tribb_kernel;
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/* Optimized matrix-matrix product evaluating only one triangular half */
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template <typename Index,
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typename LhsScalar, int LhsStorageOrder, bool ConjugateLhs,
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typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs,
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int ResStorageOrder, int UpLo, int Version = Specialized>
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struct general_matrix_matrix_triangular_product;
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// as usual if the result is row major => we transpose the product
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template <typename Index, typename LhsScalar, int LhsStorageOrder, bool ConjugateLhs,
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typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs, int UpLo, int Version>
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struct general_matrix_matrix_triangular_product<Index,LhsScalar,LhsStorageOrder,ConjugateLhs,RhsScalar,RhsStorageOrder,ConjugateRhs,RowMajor,UpLo,Version>
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{
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typedef typename ScalarBinaryOpTraits<LhsScalar, RhsScalar>::ReturnType ResScalar;
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static EIGEN_STRONG_INLINE void run(Index size, Index depth,const LhsScalar* lhs, Index lhsStride,
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const RhsScalar* rhs, Index rhsStride, ResScalar* res, Index resStride,
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const ResScalar& alpha, level3_blocking<RhsScalar,LhsScalar>& blocking)
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{
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general_matrix_matrix_triangular_product<Index,
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RhsScalar, RhsStorageOrder==RowMajor ? ColMajor : RowMajor, ConjugateRhs,
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LhsScalar, LhsStorageOrder==RowMajor ? ColMajor : RowMajor, ConjugateLhs,
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ColMajor, UpLo==Lower?Upper:Lower>
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::run(size,depth,rhs,rhsStride,lhs,lhsStride,res,resStride,alpha,blocking);
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}
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};
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template <typename Index, typename LhsScalar, int LhsStorageOrder, bool ConjugateLhs,
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typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs, int UpLo, int Version>
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struct general_matrix_matrix_triangular_product<Index,LhsScalar,LhsStorageOrder,ConjugateLhs,RhsScalar,RhsStorageOrder,ConjugateRhs,ColMajor,UpLo,Version>
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{
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typedef typename ScalarBinaryOpTraits<LhsScalar, RhsScalar>::ReturnType ResScalar;
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static EIGEN_STRONG_INLINE void run(Index size, Index depth,const LhsScalar* _lhs, Index lhsStride,
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const RhsScalar* _rhs, Index rhsStride, ResScalar* _res, Index resStride,
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const ResScalar& alpha, level3_blocking<LhsScalar,RhsScalar>& blocking)
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{
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typedef gebp_traits<LhsScalar,RhsScalar> Traits;
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typedef const_blas_data_mapper<LhsScalar, Index, LhsStorageOrder> LhsMapper;
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typedef const_blas_data_mapper<RhsScalar, Index, RhsStorageOrder> RhsMapper;
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typedef blas_data_mapper<typename Traits::ResScalar, Index, ColMajor> ResMapper;
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LhsMapper lhs(_lhs,lhsStride);
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RhsMapper rhs(_rhs,rhsStride);
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ResMapper res(_res, resStride);
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Index kc = blocking.kc();
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Index mc = (std::min)(size,blocking.mc());
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// !!! mc must be a multiple of nr:
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if(mc > Traits::nr)
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mc = (mc/Traits::nr)*Traits::nr;
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std::size_t sizeA = kc*mc;
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std::size_t sizeB = kc*size;
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ei_declare_aligned_stack_constructed_variable(LhsScalar, blockA, sizeA, blocking.blockA());
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ei_declare_aligned_stack_constructed_variable(RhsScalar, blockB, sizeB, blocking.blockB());
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gemm_pack_lhs<LhsScalar, Index, LhsMapper, Traits::mr, Traits::LhsProgress, LhsStorageOrder> pack_lhs;
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gemm_pack_rhs<RhsScalar, Index, RhsMapper, Traits::nr, RhsStorageOrder> pack_rhs;
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gebp_kernel<LhsScalar, RhsScalar, Index, ResMapper, Traits::mr, Traits::nr, ConjugateLhs, ConjugateRhs> gebp;
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tribb_kernel<LhsScalar, RhsScalar, Index, Traits::mr, Traits::nr, ConjugateLhs, ConjugateRhs, UpLo> sybb;
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for(Index k2=0; k2<depth; k2+=kc)
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{
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const Index actual_kc = (std::min)(k2+kc,depth)-k2;
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// note that the actual rhs is the transpose/adjoint of mat
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pack_rhs(blockB, rhs.getSubMapper(k2,0), actual_kc, size);
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for(Index i2=0; i2<size; i2+=mc)
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{
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const Index actual_mc = (std::min)(i2+mc,size)-i2;
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pack_lhs(blockA, lhs.getSubMapper(i2, k2), actual_kc, actual_mc);
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// the selected actual_mc * size panel of res is split into three different part:
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// 1 - before the diagonal => processed with gebp or skipped
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// 2 - the actual_mc x actual_mc symmetric block => processed with a special kernel
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// 3 - after the diagonal => processed with gebp or skipped
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if (UpLo==Lower)
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gebp(res.getSubMapper(i2, 0), blockA, blockB, actual_mc, actual_kc,
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(std::min)(size,i2), alpha, -1, -1, 0, 0);
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sybb(_res+resStride*i2 + i2, resStride, blockA, blockB + actual_kc*i2, actual_mc, actual_kc, alpha);
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if (UpLo==Upper)
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{
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Index j2 = i2+actual_mc;
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gebp(res.getSubMapper(i2, j2), blockA, blockB+actual_kc*j2, actual_mc,
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actual_kc, (std::max)(Index(0), size-j2), alpha, -1, -1, 0, 0);
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}
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}
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}
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}
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};
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// Optimized packed Block * packed Block product kernel evaluating only one given triangular part
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// This kernel is built on top of the gebp kernel:
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// - the current destination block is processed per panel of actual_mc x BlockSize
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// where BlockSize is set to the minimal value allowing gebp to be as fast as possible
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// - then, as usual, each panel is split into three parts along the diagonal,
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// the sub blocks above and below the diagonal are processed as usual,
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// while the triangular block overlapping the diagonal is evaluated into a
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// small temporary buffer which is then accumulated into the result using a
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// triangular traversal.
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template<typename LhsScalar, typename RhsScalar, typename Index, int mr, int nr, bool ConjLhs, bool ConjRhs, int UpLo>
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struct tribb_kernel
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{
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typedef gebp_traits<LhsScalar,RhsScalar,ConjLhs,ConjRhs> Traits;
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typedef typename Traits::ResScalar ResScalar;
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enum {
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BlockSize = meta_least_common_multiple<EIGEN_PLAIN_ENUM_MAX(mr,nr),EIGEN_PLAIN_ENUM_MIN(mr,nr)>::ret
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};
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void operator()(ResScalar* _res, Index resStride, const LhsScalar* blockA, const RhsScalar* blockB, Index size, Index depth, const ResScalar& alpha)
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{
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typedef blas_data_mapper<ResScalar, Index, ColMajor> ResMapper;
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ResMapper res(_res, resStride);
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gebp_kernel<LhsScalar, RhsScalar, Index, ResMapper, mr, nr, ConjLhs, ConjRhs> gebp_kernel;
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Matrix<ResScalar,BlockSize,BlockSize,ColMajor> buffer((internal::constructor_without_unaligned_array_assert()));
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// let's process the block per panel of actual_mc x BlockSize,
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// again, each is split into three parts, etc.
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for (Index j=0; j<size; j+=BlockSize)
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{
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Index actualBlockSize = std::min<Index>(BlockSize,size - j);
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const RhsScalar* actual_b = blockB+j*depth;
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if(UpLo==Upper)
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gebp_kernel(res.getSubMapper(0, j), blockA, actual_b, j, depth, actualBlockSize, alpha,
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-1, -1, 0, 0);
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// selfadjoint micro block
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{
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Index i = j;
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buffer.setZero();
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// 1 - apply the kernel on the temporary buffer
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gebp_kernel(ResMapper(buffer.data(), BlockSize), blockA+depth*i, actual_b, actualBlockSize, depth, actualBlockSize, alpha,
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-1, -1, 0, 0);
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// 2 - triangular accumulation
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for(Index j1=0; j1<actualBlockSize; ++j1)
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{
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ResScalar* r = &res(i, j + j1);
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for(Index i1=UpLo==Lower ? j1 : 0;
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UpLo==Lower ? i1<actualBlockSize : i1<=j1; ++i1)
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r[i1] += buffer(i1,j1);
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}
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}
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if(UpLo==Lower)
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{
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Index i = j+actualBlockSize;
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gebp_kernel(res.getSubMapper(i, j), blockA+depth*i, actual_b, size-i,
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depth, actualBlockSize, alpha, -1, -1, 0, 0);
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}
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}
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}
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};
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} // end namespace internal
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// high level API
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template<typename MatrixType, typename ProductType, int UpLo, bool IsOuterProduct>
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struct general_product_to_triangular_selector;
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template<typename MatrixType, typename ProductType, int UpLo>
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struct general_product_to_triangular_selector<MatrixType,ProductType,UpLo,true>
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{
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static void run(MatrixType& mat, const ProductType& prod, const typename MatrixType::Scalar& alpha, bool beta)
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{
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typedef typename MatrixType::Scalar Scalar;
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typedef typename internal::remove_all<typename ProductType::LhsNested>::type Lhs;
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typedef internal::blas_traits<Lhs> LhsBlasTraits;
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typedef typename LhsBlasTraits::DirectLinearAccessType ActualLhs;
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typedef typename internal::remove_all<ActualLhs>::type _ActualLhs;
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typename internal::add_const_on_value_type<ActualLhs>::type actualLhs = LhsBlasTraits::extract(prod.lhs());
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typedef typename internal::remove_all<typename ProductType::RhsNested>::type Rhs;
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typedef internal::blas_traits<Rhs> RhsBlasTraits;
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typedef typename RhsBlasTraits::DirectLinearAccessType ActualRhs;
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typedef typename internal::remove_all<ActualRhs>::type _ActualRhs;
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typename internal::add_const_on_value_type<ActualRhs>::type actualRhs = RhsBlasTraits::extract(prod.rhs());
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Scalar actualAlpha = alpha * LhsBlasTraits::extractScalarFactor(prod.lhs().derived()) * RhsBlasTraits::extractScalarFactor(prod.rhs().derived());
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if(!beta)
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mat.template triangularView<UpLo>().setZero();
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+
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enum {
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StorageOrder = (internal::traits<MatrixType>::Flags&RowMajorBit) ? RowMajor : ColMajor,
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UseLhsDirectly = _ActualLhs::InnerStrideAtCompileTime==1,
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UseRhsDirectly = _ActualRhs::InnerStrideAtCompileTime==1
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};
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+
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internal::gemv_static_vector_if<Scalar,Lhs::SizeAtCompileTime,Lhs::MaxSizeAtCompileTime,!UseLhsDirectly> static_lhs;
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ei_declare_aligned_stack_constructed_variable(Scalar, actualLhsPtr, actualLhs.size(),
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(UseLhsDirectly ? const_cast<Scalar*>(actualLhs.data()) : static_lhs.data()));
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if(!UseLhsDirectly) Map<typename _ActualLhs::PlainObject>(actualLhsPtr, actualLhs.size()) = actualLhs;
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internal::gemv_static_vector_if<Scalar,Rhs::SizeAtCompileTime,Rhs::MaxSizeAtCompileTime,!UseRhsDirectly> static_rhs;
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ei_declare_aligned_stack_constructed_variable(Scalar, actualRhsPtr, actualRhs.size(),
|
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(UseRhsDirectly ? const_cast<Scalar*>(actualRhs.data()) : static_rhs.data()));
|
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|
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if(!UseRhsDirectly) Map<typename _ActualRhs::PlainObject>(actualRhsPtr, actualRhs.size()) = actualRhs;
|
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|
+
|
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|
+
|
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|
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selfadjoint_rank1_update<Scalar,Index,StorageOrder,UpLo,
|
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|
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LhsBlasTraits::NeedToConjugate && NumTraits<Scalar>::IsComplex,
|
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|
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RhsBlasTraits::NeedToConjugate && NumTraits<Scalar>::IsComplex>
|
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|
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::run(actualLhs.size(), mat.data(), mat.outerStride(), actualLhsPtr, actualRhsPtr, actualAlpha);
|
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|
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}
|
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+
};
|
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+
|
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+
template<typename MatrixType, typename ProductType, int UpLo>
|
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|
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struct general_product_to_triangular_selector<MatrixType,ProductType,UpLo,false>
|
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|
+
{
|
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|
+
static void run(MatrixType& mat, const ProductType& prod, const typename MatrixType::Scalar& alpha, bool beta)
|
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|
+
{
|
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|
+
typedef typename internal::remove_all<typename ProductType::LhsNested>::type Lhs;
|
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|
+
typedef internal::blas_traits<Lhs> LhsBlasTraits;
|
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|
+
typedef typename LhsBlasTraits::DirectLinearAccessType ActualLhs;
|
255
|
+
typedef typename internal::remove_all<ActualLhs>::type _ActualLhs;
|
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|
+
typename internal::add_const_on_value_type<ActualLhs>::type actualLhs = LhsBlasTraits::extract(prod.lhs());
|
257
|
+
|
258
|
+
typedef typename internal::remove_all<typename ProductType::RhsNested>::type Rhs;
|
259
|
+
typedef internal::blas_traits<Rhs> RhsBlasTraits;
|
260
|
+
typedef typename RhsBlasTraits::DirectLinearAccessType ActualRhs;
|
261
|
+
typedef typename internal::remove_all<ActualRhs>::type _ActualRhs;
|
262
|
+
typename internal::add_const_on_value_type<ActualRhs>::type actualRhs = RhsBlasTraits::extract(prod.rhs());
|
263
|
+
|
264
|
+
typename ProductType::Scalar actualAlpha = alpha * LhsBlasTraits::extractScalarFactor(prod.lhs().derived()) * RhsBlasTraits::extractScalarFactor(prod.rhs().derived());
|
265
|
+
|
266
|
+
if(!beta)
|
267
|
+
mat.template triangularView<UpLo>().setZero();
|
268
|
+
|
269
|
+
enum {
|
270
|
+
IsRowMajor = (internal::traits<MatrixType>::Flags&RowMajorBit) ? 1 : 0,
|
271
|
+
LhsIsRowMajor = _ActualLhs::Flags&RowMajorBit ? 1 : 0,
|
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+
RhsIsRowMajor = _ActualRhs::Flags&RowMajorBit ? 1 : 0,
|
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|
+
SkipDiag = (UpLo&(UnitDiag|ZeroDiag))!=0
|
274
|
+
};
|
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|
+
|
276
|
+
Index size = mat.cols();
|
277
|
+
if(SkipDiag)
|
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|
+
size--;
|
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|
+
Index depth = actualLhs.cols();
|
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|
+
|
281
|
+
typedef internal::gemm_blocking_space<IsRowMajor ? RowMajor : ColMajor,typename Lhs::Scalar,typename Rhs::Scalar,
|
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|
+
MatrixType::MaxColsAtCompileTime, MatrixType::MaxColsAtCompileTime, _ActualRhs::MaxColsAtCompileTime> BlockingType;
|
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|
+
|
284
|
+
BlockingType blocking(size, size, depth, 1, false);
|
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|
+
|
286
|
+
internal::general_matrix_matrix_triangular_product<Index,
|
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|
+
typename Lhs::Scalar, LhsIsRowMajor ? RowMajor : ColMajor, LhsBlasTraits::NeedToConjugate,
|
288
|
+
typename Rhs::Scalar, RhsIsRowMajor ? RowMajor : ColMajor, RhsBlasTraits::NeedToConjugate,
|
289
|
+
IsRowMajor ? RowMajor : ColMajor, UpLo&(Lower|Upper)>
|
290
|
+
::run(size, depth,
|
291
|
+
&actualLhs.coeffRef(SkipDiag&&(UpLo&Lower)==Lower ? 1 : 0,0), actualLhs.outerStride(),
|
292
|
+
&actualRhs.coeffRef(0,SkipDiag&&(UpLo&Upper)==Upper ? 1 : 0), actualRhs.outerStride(),
|
293
|
+
mat.data() + (SkipDiag ? (bool(IsRowMajor) != ((UpLo&Lower)==Lower) ? 1 : mat.outerStride() ) : 0), mat.outerStride(), actualAlpha, blocking);
|
294
|
+
}
|
295
|
+
};
|
296
|
+
|
297
|
+
template<typename MatrixType, unsigned int UpLo>
|
298
|
+
template<typename ProductType>
|
299
|
+
TriangularView<MatrixType,UpLo>& TriangularViewImpl<MatrixType,UpLo,Dense>::_assignProduct(const ProductType& prod, const Scalar& alpha, bool beta)
|
300
|
+
{
|
301
|
+
EIGEN_STATIC_ASSERT((UpLo&UnitDiag)==0, WRITING_TO_TRIANGULAR_PART_WITH_UNIT_DIAGONAL_IS_NOT_SUPPORTED);
|
302
|
+
eigen_assert(derived().nestedExpression().rows() == prod.rows() && derived().cols() == prod.cols());
|
303
|
+
|
304
|
+
general_product_to_triangular_selector<MatrixType, ProductType, UpLo, internal::traits<ProductType>::InnerSize==1>::run(derived().nestedExpression().const_cast_derived(), prod, alpha, beta);
|
305
|
+
|
306
|
+
return derived();
|
307
|
+
}
|
308
|
+
|
309
|
+
} // end namespace Eigen
|
310
|
+
|
311
|
+
#endif // EIGEN_GENERAL_MATRIX_MATRIX_TRIANGULAR_H
|
@@ -0,0 +1,145 @@
|
|
1
|
+
/*
|
2
|
+
Copyright (c) 2011, Intel Corporation. All rights reserved.
|
3
|
+
|
4
|
+
Redistribution and use in source and binary forms, with or without modification,
|
5
|
+
are permitted provided that the following conditions are met:
|
6
|
+
|
7
|
+
* Redistributions of source code must retain the above copyright notice, this
|
8
|
+
list of conditions and the following disclaimer.
|
9
|
+
* Redistributions in binary form must reproduce the above copyright notice,
|
10
|
+
this list of conditions and the following disclaimer in the documentation
|
11
|
+
and/or other materials provided with the distribution.
|
12
|
+
* Neither the name of Intel Corporation nor the names of its contributors may
|
13
|
+
be used to endorse or promote products derived from this software without
|
14
|
+
specific prior written permission.
|
15
|
+
|
16
|
+
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
|
17
|
+
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
|
18
|
+
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
|
19
|
+
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
|
20
|
+
ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
|
21
|
+
(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
|
22
|
+
LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
|
23
|
+
ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
|
24
|
+
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
|
25
|
+
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
|
26
|
+
|
27
|
+
********************************************************************************
|
28
|
+
* Content : Eigen bindings to BLAS F77
|
29
|
+
* Level 3 BLAS SYRK/HERK implementation.
|
30
|
+
********************************************************************************
|
31
|
+
*/
|
32
|
+
|
33
|
+
#ifndef EIGEN_GENERAL_MATRIX_MATRIX_TRIANGULAR_BLAS_H
|
34
|
+
#define EIGEN_GENERAL_MATRIX_MATRIX_TRIANGULAR_BLAS_H
|
35
|
+
|
36
|
+
namespace Eigen {
|
37
|
+
|
38
|
+
namespace internal {
|
39
|
+
|
40
|
+
template <typename Index, typename Scalar, int AStorageOrder, bool ConjugateA, int ResStorageOrder, int UpLo>
|
41
|
+
struct general_matrix_matrix_rankupdate :
|
42
|
+
general_matrix_matrix_triangular_product<
|
43
|
+
Index,Scalar,AStorageOrder,ConjugateA,Scalar,AStorageOrder,ConjugateA,ResStorageOrder,UpLo,BuiltIn> {};
|
44
|
+
|
45
|
+
|
46
|
+
// try to go to BLAS specialization
|
47
|
+
#define EIGEN_BLAS_RANKUPDATE_SPECIALIZE(Scalar) \
|
48
|
+
template <typename Index, int LhsStorageOrder, bool ConjugateLhs, \
|
49
|
+
int RhsStorageOrder, bool ConjugateRhs, int UpLo> \
|
50
|
+
struct general_matrix_matrix_triangular_product<Index,Scalar,LhsStorageOrder,ConjugateLhs, \
|
51
|
+
Scalar,RhsStorageOrder,ConjugateRhs,ColMajor,UpLo,Specialized> { \
|
52
|
+
static EIGEN_STRONG_INLINE void run(Index size, Index depth,const Scalar* lhs, Index lhsStride, \
|
53
|
+
const Scalar* rhs, Index rhsStride, Scalar* res, Index resStride, Scalar alpha, level3_blocking<Scalar, Scalar>& blocking) \
|
54
|
+
{ \
|
55
|
+
if ( lhs==rhs && ((UpLo&(Lower|Upper))==UpLo) ) { \
|
56
|
+
general_matrix_matrix_rankupdate<Index,Scalar,LhsStorageOrder,ConjugateLhs,ColMajor,UpLo> \
|
57
|
+
::run(size,depth,lhs,lhsStride,rhs,rhsStride,res,resStride,alpha,blocking); \
|
58
|
+
} else { \
|
59
|
+
general_matrix_matrix_triangular_product<Index, \
|
60
|
+
Scalar, LhsStorageOrder, ConjugateLhs, \
|
61
|
+
Scalar, RhsStorageOrder, ConjugateRhs, \
|
62
|
+
ColMajor, UpLo, BuiltIn> \
|
63
|
+
::run(size,depth,lhs,lhsStride,rhs,rhsStride,res,resStride,alpha,blocking); \
|
64
|
+
} \
|
65
|
+
} \
|
66
|
+
};
|
67
|
+
|
68
|
+
EIGEN_BLAS_RANKUPDATE_SPECIALIZE(double)
|
69
|
+
EIGEN_BLAS_RANKUPDATE_SPECIALIZE(float)
|
70
|
+
// TODO handle complex cases
|
71
|
+
// EIGEN_BLAS_RANKUPDATE_SPECIALIZE(dcomplex)
|
72
|
+
// EIGEN_BLAS_RANKUPDATE_SPECIALIZE(scomplex)
|
73
|
+
|
74
|
+
// SYRK for float/double
|
75
|
+
#define EIGEN_BLAS_RANKUPDATE_R(EIGTYPE, BLASTYPE, BLASFUNC) \
|
76
|
+
template <typename Index, int AStorageOrder, bool ConjugateA, int UpLo> \
|
77
|
+
struct general_matrix_matrix_rankupdate<Index,EIGTYPE,AStorageOrder,ConjugateA,ColMajor,UpLo> { \
|
78
|
+
enum { \
|
79
|
+
IsLower = (UpLo&Lower) == Lower, \
|
80
|
+
LowUp = IsLower ? Lower : Upper, \
|
81
|
+
conjA = ((AStorageOrder==ColMajor) && ConjugateA) ? 1 : 0 \
|
82
|
+
}; \
|
83
|
+
static EIGEN_STRONG_INLINE void run(Index size, Index depth,const EIGTYPE* lhs, Index lhsStride, \
|
84
|
+
const EIGTYPE* /*rhs*/, Index /*rhsStride*/, EIGTYPE* res, Index resStride, EIGTYPE alpha, level3_blocking<EIGTYPE, EIGTYPE>& /*blocking*/) \
|
85
|
+
{ \
|
86
|
+
/* typedef Matrix<EIGTYPE, Dynamic, Dynamic, RhsStorageOrder> MatrixRhs;*/ \
|
87
|
+
\
|
88
|
+
BlasIndex lda=convert_index<BlasIndex>(lhsStride), ldc=convert_index<BlasIndex>(resStride), n=convert_index<BlasIndex>(size), k=convert_index<BlasIndex>(depth); \
|
89
|
+
char uplo=((IsLower) ? 'L' : 'U'), trans=((AStorageOrder==RowMajor) ? 'T':'N'); \
|
90
|
+
EIGTYPE beta(1); \
|
91
|
+
BLASFUNC(&uplo, &trans, &n, &k, (const BLASTYPE*)&numext::real_ref(alpha), lhs, &lda, (const BLASTYPE*)&numext::real_ref(beta), res, &ldc); \
|
92
|
+
} \
|
93
|
+
};
|
94
|
+
|
95
|
+
// HERK for complex data
|
96
|
+
#define EIGEN_BLAS_RANKUPDATE_C(EIGTYPE, BLASTYPE, RTYPE, BLASFUNC) \
|
97
|
+
template <typename Index, int AStorageOrder, bool ConjugateA, int UpLo> \
|
98
|
+
struct general_matrix_matrix_rankupdate<Index,EIGTYPE,AStorageOrder,ConjugateA,ColMajor,UpLo> { \
|
99
|
+
enum { \
|
100
|
+
IsLower = (UpLo&Lower) == Lower, \
|
101
|
+
LowUp = IsLower ? Lower : Upper, \
|
102
|
+
conjA = (((AStorageOrder==ColMajor) && ConjugateA) || ((AStorageOrder==RowMajor) && !ConjugateA)) ? 1 : 0 \
|
103
|
+
}; \
|
104
|
+
static EIGEN_STRONG_INLINE void run(Index size, Index depth,const EIGTYPE* lhs, Index lhsStride, \
|
105
|
+
const EIGTYPE* /*rhs*/, Index /*rhsStride*/, EIGTYPE* res, Index resStride, EIGTYPE alpha, level3_blocking<EIGTYPE, EIGTYPE>& /*blocking*/) \
|
106
|
+
{ \
|
107
|
+
typedef Matrix<EIGTYPE, Dynamic, Dynamic, AStorageOrder> MatrixType; \
|
108
|
+
\
|
109
|
+
BlasIndex lda=convert_index<BlasIndex>(lhsStride), ldc=convert_index<BlasIndex>(resStride), n=convert_index<BlasIndex>(size), k=convert_index<BlasIndex>(depth); \
|
110
|
+
char uplo=((IsLower) ? 'L' : 'U'), trans=((AStorageOrder==RowMajor) ? 'C':'N'); \
|
111
|
+
RTYPE alpha_, beta_; \
|
112
|
+
const EIGTYPE* a_ptr; \
|
113
|
+
\
|
114
|
+
alpha_ = alpha.real(); \
|
115
|
+
beta_ = 1.0; \
|
116
|
+
/* Copy with conjugation in some cases*/ \
|
117
|
+
MatrixType a; \
|
118
|
+
if (conjA) { \
|
119
|
+
Map<const MatrixType, 0, OuterStride<> > mapA(lhs,n,k,OuterStride<>(lhsStride)); \
|
120
|
+
a = mapA.conjugate(); \
|
121
|
+
lda = a.outerStride(); \
|
122
|
+
a_ptr = a.data(); \
|
123
|
+
} else a_ptr=lhs; \
|
124
|
+
BLASFUNC(&uplo, &trans, &n, &k, &alpha_, (BLASTYPE*)a_ptr, &lda, &beta_, (BLASTYPE*)res, &ldc); \
|
125
|
+
} \
|
126
|
+
};
|
127
|
+
|
128
|
+
#ifdef EIGEN_USE_MKL
|
129
|
+
EIGEN_BLAS_RANKUPDATE_R(double, double, dsyrk)
|
130
|
+
EIGEN_BLAS_RANKUPDATE_R(float, float, ssyrk)
|
131
|
+
#else
|
132
|
+
EIGEN_BLAS_RANKUPDATE_R(double, double, dsyrk_)
|
133
|
+
EIGEN_BLAS_RANKUPDATE_R(float, float, ssyrk_)
|
134
|
+
#endif
|
135
|
+
|
136
|
+
// TODO hanlde complex cases
|
137
|
+
// EIGEN_BLAS_RANKUPDATE_C(dcomplex, double, double, zherk_)
|
138
|
+
// EIGEN_BLAS_RANKUPDATE_C(scomplex, float, float, cherk_)
|
139
|
+
|
140
|
+
|
141
|
+
} // end namespace internal
|
142
|
+
|
143
|
+
} // end namespace Eigen
|
144
|
+
|
145
|
+
#endif // EIGEN_GENERAL_MATRIX_MATRIX_TRIANGULAR_BLAS_H
|