tomoto 0.1.0

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Files changed (420) hide show
  1. checksums.yaml +7 -0
  2. data/CHANGELOG.md +3 -0
  3. data/LICENSE.txt +22 -0
  4. data/README.md +123 -0
  5. data/ext/tomoto/ext.cpp +245 -0
  6. data/ext/tomoto/extconf.rb +28 -0
  7. data/lib/tomoto.rb +12 -0
  8. data/lib/tomoto/ct.rb +11 -0
  9. data/lib/tomoto/hdp.rb +11 -0
  10. data/lib/tomoto/lda.rb +67 -0
  11. data/lib/tomoto/version.rb +3 -0
  12. data/vendor/EigenRand/EigenRand/Core.h +1139 -0
  13. data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
  14. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
  15. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
  16. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
  17. data/vendor/EigenRand/EigenRand/EigenRand +19 -0
  18. data/vendor/EigenRand/EigenRand/Macro.h +24 -0
  19. data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
  20. data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
  21. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
  22. data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
  23. data/vendor/EigenRand/EigenRand/doc.h +220 -0
  24. data/vendor/EigenRand/LICENSE +21 -0
  25. data/vendor/EigenRand/README.md +288 -0
  26. data/vendor/eigen/COPYING.BSD +26 -0
  27. data/vendor/eigen/COPYING.GPL +674 -0
  28. data/vendor/eigen/COPYING.LGPL +502 -0
  29. data/vendor/eigen/COPYING.MINPACK +52 -0
  30. data/vendor/eigen/COPYING.MPL2 +373 -0
  31. data/vendor/eigen/COPYING.README +18 -0
  32. data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
  33. data/vendor/eigen/Eigen/Cholesky +46 -0
  34. data/vendor/eigen/Eigen/CholmodSupport +48 -0
  35. data/vendor/eigen/Eigen/Core +537 -0
  36. data/vendor/eigen/Eigen/Dense +7 -0
  37. data/vendor/eigen/Eigen/Eigen +2 -0
  38. data/vendor/eigen/Eigen/Eigenvalues +61 -0
  39. data/vendor/eigen/Eigen/Geometry +62 -0
  40. data/vendor/eigen/Eigen/Householder +30 -0
  41. data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
  42. data/vendor/eigen/Eigen/Jacobi +33 -0
  43. data/vendor/eigen/Eigen/LU +50 -0
  44. data/vendor/eigen/Eigen/MetisSupport +35 -0
  45. data/vendor/eigen/Eigen/OrderingMethods +73 -0
  46. data/vendor/eigen/Eigen/PaStiXSupport +48 -0
  47. data/vendor/eigen/Eigen/PardisoSupport +35 -0
  48. data/vendor/eigen/Eigen/QR +51 -0
  49. data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
  50. data/vendor/eigen/Eigen/SPQRSupport +34 -0
  51. data/vendor/eigen/Eigen/SVD +51 -0
  52. data/vendor/eigen/Eigen/Sparse +36 -0
  53. data/vendor/eigen/Eigen/SparseCholesky +45 -0
  54. data/vendor/eigen/Eigen/SparseCore +69 -0
  55. data/vendor/eigen/Eigen/SparseLU +46 -0
  56. data/vendor/eigen/Eigen/SparseQR +37 -0
  57. data/vendor/eigen/Eigen/StdDeque +27 -0
  58. data/vendor/eigen/Eigen/StdList +26 -0
  59. data/vendor/eigen/Eigen/StdVector +27 -0
  60. data/vendor/eigen/Eigen/SuperLUSupport +64 -0
  61. data/vendor/eigen/Eigen/UmfPackSupport +40 -0
  62. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
  63. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
  64. data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  65. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
  66. data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
  67. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
  68. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
  69. data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
  70. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
  71. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
  72. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
  73. data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
  74. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
  75. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
  76. data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
  77. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
  78. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
  79. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
  80. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
  81. data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  82. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
  84. data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
  85. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
  86. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
  87. data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
  88. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
  89. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
  90. data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
  91. data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
  92. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  93. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
  94. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
  95. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
  96. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
  97. data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
  98. data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
  99. data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
  100. data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
  101. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
  102. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
  103. data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
  104. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
  105. data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
  106. data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
  107. data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
  108. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
  109. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
  110. data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
  111. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
  112. data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
  113. data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
  114. data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
  115. data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
  116. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
  117. data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
  118. data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
  119. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
  120. data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  121. data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
  122. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
  123. data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
  124. data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
  125. data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
  126. data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
  127. data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
  128. data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
  129. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
  130. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
  131. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
  132. data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
  133. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
  134. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
  135. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
  136. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
  137. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
  138. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
  139. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
  140. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
  141. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
  142. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
  143. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
  145. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
  146. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
  148. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
  149. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
  153. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
  154. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
  156. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
  160. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
  161. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
  162. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
  163. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
  164. data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  165. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
  166. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
  167. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
  168. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
  169. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  170. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
  171. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
  172. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  173. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
  174. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
  175. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
  176. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
  177. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  178. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  179. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  180. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
  181. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
  182. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  183. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  184. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
  185. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
  186. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
  187. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
  188. data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
  189. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
  190. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  191. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
  192. data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
  193. data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
  194. data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
  195. data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
  196. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
  197. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
  198. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
  199. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  200. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
  201. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  202. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  203. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  204. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  205. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  206. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  207. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
  208. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
  209. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  210. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
  211. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  212. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
  213. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
  214. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
  215. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
  216. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
  217. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
  218. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
  219. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  220. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
  221. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
  222. data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
  223. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
  224. data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
  225. data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
  226. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
  227. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
  228. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
  229. data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
  230. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
  231. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  232. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
  233. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
  234. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
  235. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
  236. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
  237. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
  238. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
  239. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
  240. data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
  241. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
  242. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
  243. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
  244. data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  245. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
  246. data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  247. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
  248. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
  249. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
  250. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  251. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
  252. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
  253. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  254. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
  255. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
  256. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
  257. data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  258. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
  259. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
  260. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
  261. data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  262. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
  263. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  264. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
  265. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  266. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
  267. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
  268. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  269. data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  270. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
  271. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
  272. data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  273. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
  274. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
  275. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
  276. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
  277. data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  278. data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
  279. data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  280. data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
  281. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
  282. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
  283. data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  284. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
  285. data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
  295. data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  296. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
  297. data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  298. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  299. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  300. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  307. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  308. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  309. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  310. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  311. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  312. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  313. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
  314. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +126 -0
  315. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
  316. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
  317. data/vendor/eigen/Eigen/src/StlSupport/details.h +84 -0
  318. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
  319. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
  320. data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
  321. data/vendor/eigen/Eigen/src/misc/Kernel.h +79 -0
  322. data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
  323. data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
  324. data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
  325. data/vendor/eigen/Eigen/src/misc/lapacke.h +16291 -0
  326. data/vendor/eigen/Eigen/src/misc/lapacke_mangling.h +17 -0
  327. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +332 -0
  328. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
  329. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
  330. data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  331. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +163 -0
  332. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  333. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
  334. data/vendor/eigen/README.md +3 -0
  335. data/vendor/eigen/bench/README.txt +55 -0
  336. data/vendor/eigen/bench/btl/COPYING +340 -0
  337. data/vendor/eigen/bench/btl/README +154 -0
  338. data/vendor/eigen/bench/tensors/README +21 -0
  339. data/vendor/eigen/blas/README.txt +6 -0
  340. data/vendor/eigen/demos/mandelbrot/README +10 -0
  341. data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
  342. data/vendor/eigen/demos/opengl/README +13 -0
  343. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
  344. data/vendor/eigen/unsupported/README.txt +50 -0
  345. data/vendor/tomotopy/LICENSE +21 -0
  346. data/vendor/tomotopy/README.kr.rst +375 -0
  347. data/vendor/tomotopy/README.rst +382 -0
  348. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
  349. data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
  350. data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
  351. data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
  352. data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
  353. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
  354. data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
  355. data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
  356. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
  357. data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
  358. data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
  359. data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
  360. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
  361. data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
  362. data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
  363. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
  364. data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
  365. data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
  366. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
  367. data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
  368. data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
  369. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
  370. data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
  371. data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
  372. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
  373. data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
  374. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
  375. data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
  376. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
  377. data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
  378. data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
  379. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
  380. data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
  381. data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
  382. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
  383. data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
  384. data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
  385. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
  386. data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
  387. data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
  388. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
  389. data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
  390. data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
  391. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
  392. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
  393. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +169 -0
  394. data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
  395. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
  396. data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
  397. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
  398. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
  399. data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
  400. data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
  401. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
  402. data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
  403. data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
  404. data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
  405. data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
  406. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
  407. data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
  408. data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
  409. data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
  410. data/vendor/tomotopy/src/Utils/exception.h +28 -0
  411. data/vendor/tomotopy/src/Utils/math.h +281 -0
  412. data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
  413. data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
  414. data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
  415. data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
  416. data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
  417. data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
  418. data/vendor/tomotopy/src/Utils/text.hpp +49 -0
  419. data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
  420. metadata +531 -0
@@ -0,0 +1,287 @@
1
+ /*
2
+ Copyright (c) 2011, Intel Corporation. All rights reserved.
3
+
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+ Redistribution and use in source and binary forms, with or without modification,
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+ are permitted provided that the following conditions are met:
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+
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+ * Redistributions of source code must retain the above copyright notice, this
8
+ list of conditions and the following disclaimer.
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+ * Redistributions in binary form must reproduce the above copyright notice,
10
+ this list of conditions and the following disclaimer in the documentation
11
+ and/or other materials provided with the distribution.
12
+ * Neither the name of Intel Corporation nor the names of its contributors may
13
+ be used to endorse or promote products derived from this software without
14
+ specific prior written permission.
15
+
16
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
17
+ ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
18
+ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
19
+ DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
20
+ ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
21
+ (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
22
+ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
23
+ ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
24
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
25
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
26
+ //
27
+ ********************************************************************************
28
+ * Content : Eigen bindings to BLAS F77
29
+ * Self adjoint matrix * matrix product functionality based on ?SYMM/?HEMM.
30
+ ********************************************************************************
31
+ */
32
+
33
+ #ifndef EIGEN_SELFADJOINT_MATRIX_MATRIX_BLAS_H
34
+ #define EIGEN_SELFADJOINT_MATRIX_MATRIX_BLAS_H
35
+
36
+ namespace Eigen {
37
+
38
+ namespace internal {
39
+
40
+
41
+ /* Optimized selfadjoint matrix * matrix (?SYMM/?HEMM) product */
42
+
43
+ #define EIGEN_BLAS_SYMM_L(EIGTYPE, BLASTYPE, EIGPREFIX, BLASFUNC) \
44
+ template <typename Index, \
45
+ int LhsStorageOrder, bool ConjugateLhs, \
46
+ int RhsStorageOrder, bool ConjugateRhs> \
47
+ struct product_selfadjoint_matrix<EIGTYPE,Index,LhsStorageOrder,true,ConjugateLhs,RhsStorageOrder,false,ConjugateRhs,ColMajor> \
48
+ {\
49
+ \
50
+ static void run( \
51
+ Index rows, Index cols, \
52
+ const EIGTYPE* _lhs, Index lhsStride, \
53
+ const EIGTYPE* _rhs, Index rhsStride, \
54
+ EIGTYPE* res, Index resStride, \
55
+ EIGTYPE alpha, level3_blocking<EIGTYPE, EIGTYPE>& /*blocking*/) \
56
+ { \
57
+ char side='L', uplo='L'; \
58
+ BlasIndex m, n, lda, ldb, ldc; \
59
+ const EIGTYPE *a, *b; \
60
+ EIGTYPE beta(1); \
61
+ MatrixX##EIGPREFIX b_tmp; \
62
+ \
63
+ /* Set transpose options */ \
64
+ /* Set m, n, k */ \
65
+ m = convert_index<BlasIndex>(rows); \
66
+ n = convert_index<BlasIndex>(cols); \
67
+ \
68
+ /* Set lda, ldb, ldc */ \
69
+ lda = convert_index<BlasIndex>(lhsStride); \
70
+ ldb = convert_index<BlasIndex>(rhsStride); \
71
+ ldc = convert_index<BlasIndex>(resStride); \
72
+ \
73
+ /* Set a, b, c */ \
74
+ if (LhsStorageOrder==RowMajor) uplo='U'; \
75
+ a = _lhs; \
76
+ \
77
+ if (RhsStorageOrder==RowMajor) { \
78
+ Map<const MatrixX##EIGPREFIX, 0, OuterStride<> > rhs(_rhs,n,m,OuterStride<>(rhsStride)); \
79
+ b_tmp = rhs.adjoint(); \
80
+ b = b_tmp.data(); \
81
+ ldb = convert_index<BlasIndex>(b_tmp.outerStride()); \
82
+ } else b = _rhs; \
83
+ \
84
+ BLASFUNC(&side, &uplo, &m, &n, (const BLASTYPE*)&numext::real_ref(alpha), (const BLASTYPE*)a, &lda, (const BLASTYPE*)b, &ldb, (const BLASTYPE*)&numext::real_ref(beta), (BLASTYPE*)res, &ldc); \
85
+ \
86
+ } \
87
+ };
88
+
89
+
90
+ #define EIGEN_BLAS_HEMM_L(EIGTYPE, BLASTYPE, EIGPREFIX, BLASFUNC) \
91
+ template <typename Index, \
92
+ int LhsStorageOrder, bool ConjugateLhs, \
93
+ int RhsStorageOrder, bool ConjugateRhs> \
94
+ struct product_selfadjoint_matrix<EIGTYPE,Index,LhsStorageOrder,true,ConjugateLhs,RhsStorageOrder,false,ConjugateRhs,ColMajor> \
95
+ {\
96
+ static void run( \
97
+ Index rows, Index cols, \
98
+ const EIGTYPE* _lhs, Index lhsStride, \
99
+ const EIGTYPE* _rhs, Index rhsStride, \
100
+ EIGTYPE* res, Index resStride, \
101
+ EIGTYPE alpha, level3_blocking<EIGTYPE, EIGTYPE>& /*blocking*/) \
102
+ { \
103
+ char side='L', uplo='L'; \
104
+ BlasIndex m, n, lda, ldb, ldc; \
105
+ const EIGTYPE *a, *b; \
106
+ EIGTYPE beta(1); \
107
+ MatrixX##EIGPREFIX b_tmp; \
108
+ Matrix<EIGTYPE, Dynamic, Dynamic, LhsStorageOrder> a_tmp; \
109
+ \
110
+ /* Set transpose options */ \
111
+ /* Set m, n, k */ \
112
+ m = convert_index<BlasIndex>(rows); \
113
+ n = convert_index<BlasIndex>(cols); \
114
+ \
115
+ /* Set lda, ldb, ldc */ \
116
+ lda = convert_index<BlasIndex>(lhsStride); \
117
+ ldb = convert_index<BlasIndex>(rhsStride); \
118
+ ldc = convert_index<BlasIndex>(resStride); \
119
+ \
120
+ /* Set a, b, c */ \
121
+ if (((LhsStorageOrder==ColMajor) && ConjugateLhs) || ((LhsStorageOrder==RowMajor) && (!ConjugateLhs))) { \
122
+ Map<const Matrix<EIGTYPE, Dynamic, Dynamic, LhsStorageOrder>, 0, OuterStride<> > lhs(_lhs,m,m,OuterStride<>(lhsStride)); \
123
+ a_tmp = lhs.conjugate(); \
124
+ a = a_tmp.data(); \
125
+ lda = convert_index<BlasIndex>(a_tmp.outerStride()); \
126
+ } else a = _lhs; \
127
+ if (LhsStorageOrder==RowMajor) uplo='U'; \
128
+ \
129
+ if (RhsStorageOrder==ColMajor && (!ConjugateRhs)) { \
130
+ b = _rhs; } \
131
+ else { \
132
+ if (RhsStorageOrder==ColMajor && ConjugateRhs) { \
133
+ Map<const MatrixX##EIGPREFIX, 0, OuterStride<> > rhs(_rhs,m,n,OuterStride<>(rhsStride)); \
134
+ b_tmp = rhs.conjugate(); \
135
+ } else \
136
+ if (ConjugateRhs) { \
137
+ Map<const MatrixX##EIGPREFIX, 0, OuterStride<> > rhs(_rhs,n,m,OuterStride<>(rhsStride)); \
138
+ b_tmp = rhs.adjoint(); \
139
+ } else { \
140
+ Map<const MatrixX##EIGPREFIX, 0, OuterStride<> > rhs(_rhs,n,m,OuterStride<>(rhsStride)); \
141
+ b_tmp = rhs.transpose(); \
142
+ } \
143
+ b = b_tmp.data(); \
144
+ ldb = convert_index<BlasIndex>(b_tmp.outerStride()); \
145
+ } \
146
+ \
147
+ BLASFUNC(&side, &uplo, &m, &n, (const BLASTYPE*)&numext::real_ref(alpha), (const BLASTYPE*)a, &lda, (const BLASTYPE*)b, &ldb, (const BLASTYPE*)&numext::real_ref(beta), (BLASTYPE*)res, &ldc); \
148
+ \
149
+ } \
150
+ };
151
+
152
+ #ifdef EIGEN_USE_MKL
153
+ EIGEN_BLAS_SYMM_L(double, double, d, dsymm)
154
+ EIGEN_BLAS_SYMM_L(float, float, f, ssymm)
155
+ EIGEN_BLAS_HEMM_L(dcomplex, MKL_Complex16, cd, zhemm)
156
+ EIGEN_BLAS_HEMM_L(scomplex, MKL_Complex8, cf, chemm)
157
+ #else
158
+ EIGEN_BLAS_SYMM_L(double, double, d, dsymm_)
159
+ EIGEN_BLAS_SYMM_L(float, float, f, ssymm_)
160
+ EIGEN_BLAS_HEMM_L(dcomplex, double, cd, zhemm_)
161
+ EIGEN_BLAS_HEMM_L(scomplex, float, cf, chemm_)
162
+ #endif
163
+
164
+ /* Optimized matrix * selfadjoint matrix (?SYMM/?HEMM) product */
165
+
166
+ #define EIGEN_BLAS_SYMM_R(EIGTYPE, BLASTYPE, EIGPREFIX, BLASFUNC) \
167
+ template <typename Index, \
168
+ int LhsStorageOrder, bool ConjugateLhs, \
169
+ int RhsStorageOrder, bool ConjugateRhs> \
170
+ struct product_selfadjoint_matrix<EIGTYPE,Index,LhsStorageOrder,false,ConjugateLhs,RhsStorageOrder,true,ConjugateRhs,ColMajor> \
171
+ {\
172
+ \
173
+ static void run( \
174
+ Index rows, Index cols, \
175
+ const EIGTYPE* _lhs, Index lhsStride, \
176
+ const EIGTYPE* _rhs, Index rhsStride, \
177
+ EIGTYPE* res, Index resStride, \
178
+ EIGTYPE alpha, level3_blocking<EIGTYPE, EIGTYPE>& /*blocking*/) \
179
+ { \
180
+ char side='R', uplo='L'; \
181
+ BlasIndex m, n, lda, ldb, ldc; \
182
+ const EIGTYPE *a, *b; \
183
+ EIGTYPE beta(1); \
184
+ MatrixX##EIGPREFIX b_tmp; \
185
+ \
186
+ /* Set m, n, k */ \
187
+ m = convert_index<BlasIndex>(rows); \
188
+ n = convert_index<BlasIndex>(cols); \
189
+ \
190
+ /* Set lda, ldb, ldc */ \
191
+ lda = convert_index<BlasIndex>(rhsStride); \
192
+ ldb = convert_index<BlasIndex>(lhsStride); \
193
+ ldc = convert_index<BlasIndex>(resStride); \
194
+ \
195
+ /* Set a, b, c */ \
196
+ if (RhsStorageOrder==RowMajor) uplo='U'; \
197
+ a = _rhs; \
198
+ \
199
+ if (LhsStorageOrder==RowMajor) { \
200
+ Map<const MatrixX##EIGPREFIX, 0, OuterStride<> > lhs(_lhs,n,m,OuterStride<>(rhsStride)); \
201
+ b_tmp = lhs.adjoint(); \
202
+ b = b_tmp.data(); \
203
+ ldb = convert_index<BlasIndex>(b_tmp.outerStride()); \
204
+ } else b = _lhs; \
205
+ \
206
+ BLASFUNC(&side, &uplo, &m, &n, (const BLASTYPE*)&numext::real_ref(alpha), (const BLASTYPE*)a, &lda, (const BLASTYPE*)b, &ldb, (const BLASTYPE*)&numext::real_ref(beta), (BLASTYPE*)res, &ldc); \
207
+ \
208
+ } \
209
+ };
210
+
211
+
212
+ #define EIGEN_BLAS_HEMM_R(EIGTYPE, BLASTYPE, EIGPREFIX, BLASFUNC) \
213
+ template <typename Index, \
214
+ int LhsStorageOrder, bool ConjugateLhs, \
215
+ int RhsStorageOrder, bool ConjugateRhs> \
216
+ struct product_selfadjoint_matrix<EIGTYPE,Index,LhsStorageOrder,false,ConjugateLhs,RhsStorageOrder,true,ConjugateRhs,ColMajor> \
217
+ {\
218
+ static void run( \
219
+ Index rows, Index cols, \
220
+ const EIGTYPE* _lhs, Index lhsStride, \
221
+ const EIGTYPE* _rhs, Index rhsStride, \
222
+ EIGTYPE* res, Index resStride, \
223
+ EIGTYPE alpha, level3_blocking<EIGTYPE, EIGTYPE>& /*blocking*/) \
224
+ { \
225
+ char side='R', uplo='L'; \
226
+ BlasIndex m, n, lda, ldb, ldc; \
227
+ const EIGTYPE *a, *b; \
228
+ EIGTYPE beta(1); \
229
+ MatrixX##EIGPREFIX b_tmp; \
230
+ Matrix<EIGTYPE, Dynamic, Dynamic, RhsStorageOrder> a_tmp; \
231
+ \
232
+ /* Set m, n, k */ \
233
+ m = convert_index<BlasIndex>(rows); \
234
+ n = convert_index<BlasIndex>(cols); \
235
+ \
236
+ /* Set lda, ldb, ldc */ \
237
+ lda = convert_index<BlasIndex>(rhsStride); \
238
+ ldb = convert_index<BlasIndex>(lhsStride); \
239
+ ldc = convert_index<BlasIndex>(resStride); \
240
+ \
241
+ /* Set a, b, c */ \
242
+ if (((RhsStorageOrder==ColMajor) && ConjugateRhs) || ((RhsStorageOrder==RowMajor) && (!ConjugateRhs))) { \
243
+ Map<const Matrix<EIGTYPE, Dynamic, Dynamic, RhsStorageOrder>, 0, OuterStride<> > rhs(_rhs,n,n,OuterStride<>(rhsStride)); \
244
+ a_tmp = rhs.conjugate(); \
245
+ a = a_tmp.data(); \
246
+ lda = convert_index<BlasIndex>(a_tmp.outerStride()); \
247
+ } else a = _rhs; \
248
+ if (RhsStorageOrder==RowMajor) uplo='U'; \
249
+ \
250
+ if (LhsStorageOrder==ColMajor && (!ConjugateLhs)) { \
251
+ b = _lhs; } \
252
+ else { \
253
+ if (LhsStorageOrder==ColMajor && ConjugateLhs) { \
254
+ Map<const MatrixX##EIGPREFIX, 0, OuterStride<> > lhs(_lhs,m,n,OuterStride<>(lhsStride)); \
255
+ b_tmp = lhs.conjugate(); \
256
+ } else \
257
+ if (ConjugateLhs) { \
258
+ Map<const MatrixX##EIGPREFIX, 0, OuterStride<> > lhs(_lhs,n,m,OuterStride<>(lhsStride)); \
259
+ b_tmp = lhs.adjoint(); \
260
+ } else { \
261
+ Map<const MatrixX##EIGPREFIX, 0, OuterStride<> > lhs(_lhs,n,m,OuterStride<>(lhsStride)); \
262
+ b_tmp = lhs.transpose(); \
263
+ } \
264
+ b = b_tmp.data(); \
265
+ ldb = convert_index<BlasIndex>(b_tmp.outerStride()); \
266
+ } \
267
+ \
268
+ BLASFUNC(&side, &uplo, &m, &n, (const BLASTYPE*)&numext::real_ref(alpha), (const BLASTYPE*)a, &lda, (const BLASTYPE*)b, &ldb, (const BLASTYPE*)&numext::real_ref(beta), (BLASTYPE*)res, &ldc); \
269
+ } \
270
+ };
271
+
272
+ #ifdef EIGEN_USE_MKL
273
+ EIGEN_BLAS_SYMM_R(double, double, d, dsymm)
274
+ EIGEN_BLAS_SYMM_R(float, float, f, ssymm)
275
+ EIGEN_BLAS_HEMM_R(dcomplex, MKL_Complex16, cd, zhemm)
276
+ EIGEN_BLAS_HEMM_R(scomplex, MKL_Complex8, cf, chemm)
277
+ #else
278
+ EIGEN_BLAS_SYMM_R(double, double, d, dsymm_)
279
+ EIGEN_BLAS_SYMM_R(float, float, f, ssymm_)
280
+ EIGEN_BLAS_HEMM_R(dcomplex, double, cd, zhemm_)
281
+ EIGEN_BLAS_HEMM_R(scomplex, float, cf, chemm_)
282
+ #endif
283
+ } // end namespace internal
284
+
285
+ } // end namespace Eigen
286
+
287
+ #endif // EIGEN_SELFADJOINT_MATRIX_MATRIX_BLAS_H
@@ -0,0 +1,260 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008-2009 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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+
10
+ #ifndef EIGEN_SELFADJOINT_MATRIX_VECTOR_H
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+ #define EIGEN_SELFADJOINT_MATRIX_VECTOR_H
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+
13
+ namespace Eigen {
14
+
15
+ namespace internal {
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+
17
+ /* Optimized selfadjoint matrix * vector product:
18
+ * This algorithm processes 2 columns at onces that allows to both reduce
19
+ * the number of load/stores of the result by a factor 2 and to reduce
20
+ * the instruction dependency.
21
+ */
22
+
23
+ template<typename Scalar, typename Index, int StorageOrder, int UpLo, bool ConjugateLhs, bool ConjugateRhs, int Version=Specialized>
24
+ struct selfadjoint_matrix_vector_product;
25
+
26
+ template<typename Scalar, typename Index, int StorageOrder, int UpLo, bool ConjugateLhs, bool ConjugateRhs, int Version>
27
+ struct selfadjoint_matrix_vector_product
28
+
29
+ {
30
+ static EIGEN_DONT_INLINE void run(
31
+ Index size,
32
+ const Scalar* lhs, Index lhsStride,
33
+ const Scalar* rhs,
34
+ Scalar* res,
35
+ Scalar alpha);
36
+ };
37
+
38
+ template<typename Scalar, typename Index, int StorageOrder, int UpLo, bool ConjugateLhs, bool ConjugateRhs, int Version>
39
+ EIGEN_DONT_INLINE void selfadjoint_matrix_vector_product<Scalar,Index,StorageOrder,UpLo,ConjugateLhs,ConjugateRhs,Version>::run(
40
+ Index size,
41
+ const Scalar* lhs, Index lhsStride,
42
+ const Scalar* rhs,
43
+ Scalar* res,
44
+ Scalar alpha)
45
+ {
46
+ typedef typename packet_traits<Scalar>::type Packet;
47
+ typedef typename NumTraits<Scalar>::Real RealScalar;
48
+ const Index PacketSize = sizeof(Packet)/sizeof(Scalar);
49
+
50
+ enum {
51
+ IsRowMajor = StorageOrder==RowMajor ? 1 : 0,
52
+ IsLower = UpLo == Lower ? 1 : 0,
53
+ FirstTriangular = IsRowMajor == IsLower
54
+ };
55
+
56
+ conj_helper<Scalar,Scalar,NumTraits<Scalar>::IsComplex && EIGEN_LOGICAL_XOR(ConjugateLhs, IsRowMajor), ConjugateRhs> cj0;
57
+ conj_helper<Scalar,Scalar,NumTraits<Scalar>::IsComplex && EIGEN_LOGICAL_XOR(ConjugateLhs, !IsRowMajor), ConjugateRhs> cj1;
58
+ conj_helper<RealScalar,Scalar,false, ConjugateRhs> cjd;
59
+
60
+ conj_helper<Packet,Packet,NumTraits<Scalar>::IsComplex && EIGEN_LOGICAL_XOR(ConjugateLhs, IsRowMajor), ConjugateRhs> pcj0;
61
+ conj_helper<Packet,Packet,NumTraits<Scalar>::IsComplex && EIGEN_LOGICAL_XOR(ConjugateLhs, !IsRowMajor), ConjugateRhs> pcj1;
62
+
63
+ Scalar cjAlpha = ConjugateRhs ? numext::conj(alpha) : alpha;
64
+
65
+
66
+ Index bound = (std::max)(Index(0),size-8) & 0xfffffffe;
67
+ if (FirstTriangular)
68
+ bound = size - bound;
69
+
70
+ for (Index j=FirstTriangular ? bound : 0;
71
+ j<(FirstTriangular ? size : bound);j+=2)
72
+ {
73
+ const Scalar* EIGEN_RESTRICT A0 = lhs + j*lhsStride;
74
+ const Scalar* EIGEN_RESTRICT A1 = lhs + (j+1)*lhsStride;
75
+
76
+ Scalar t0 = cjAlpha * rhs[j];
77
+ Packet ptmp0 = pset1<Packet>(t0);
78
+ Scalar t1 = cjAlpha * rhs[j+1];
79
+ Packet ptmp1 = pset1<Packet>(t1);
80
+
81
+ Scalar t2(0);
82
+ Packet ptmp2 = pset1<Packet>(t2);
83
+ Scalar t3(0);
84
+ Packet ptmp3 = pset1<Packet>(t3);
85
+
86
+ Index starti = FirstTriangular ? 0 : j+2;
87
+ Index endi = FirstTriangular ? j : size;
88
+ Index alignedStart = (starti) + internal::first_default_aligned(&res[starti], endi-starti);
89
+ Index alignedEnd = alignedStart + ((endi-alignedStart)/(PacketSize))*(PacketSize);
90
+
91
+ res[j] += cjd.pmul(numext::real(A0[j]), t0);
92
+ res[j+1] += cjd.pmul(numext::real(A1[j+1]), t1);
93
+ if(FirstTriangular)
94
+ {
95
+ res[j] += cj0.pmul(A1[j], t1);
96
+ t3 += cj1.pmul(A1[j], rhs[j]);
97
+ }
98
+ else
99
+ {
100
+ res[j+1] += cj0.pmul(A0[j+1],t0);
101
+ t2 += cj1.pmul(A0[j+1], rhs[j+1]);
102
+ }
103
+
104
+ for (Index i=starti; i<alignedStart; ++i)
105
+ {
106
+ res[i] += cj0.pmul(A0[i], t0) + cj0.pmul(A1[i],t1);
107
+ t2 += cj1.pmul(A0[i], rhs[i]);
108
+ t3 += cj1.pmul(A1[i], rhs[i]);
109
+ }
110
+ // Yes this an optimization for gcc 4.3 and 4.4 (=> huge speed up)
111
+ // gcc 4.2 does this optimization automatically.
112
+ const Scalar* EIGEN_RESTRICT a0It = A0 + alignedStart;
113
+ const Scalar* EIGEN_RESTRICT a1It = A1 + alignedStart;
114
+ const Scalar* EIGEN_RESTRICT rhsIt = rhs + alignedStart;
115
+ Scalar* EIGEN_RESTRICT resIt = res + alignedStart;
116
+ for (Index i=alignedStart; i<alignedEnd; i+=PacketSize)
117
+ {
118
+ Packet A0i = ploadu<Packet>(a0It); a0It += PacketSize;
119
+ Packet A1i = ploadu<Packet>(a1It); a1It += PacketSize;
120
+ Packet Bi = ploadu<Packet>(rhsIt); rhsIt += PacketSize; // FIXME should be aligned in most cases
121
+ Packet Xi = pload <Packet>(resIt);
122
+
123
+ Xi = pcj0.pmadd(A0i,ptmp0, pcj0.pmadd(A1i,ptmp1,Xi));
124
+ ptmp2 = pcj1.pmadd(A0i, Bi, ptmp2);
125
+ ptmp3 = pcj1.pmadd(A1i, Bi, ptmp3);
126
+ pstore(resIt,Xi); resIt += PacketSize;
127
+ }
128
+ for (Index i=alignedEnd; i<endi; i++)
129
+ {
130
+ res[i] += cj0.pmul(A0[i], t0) + cj0.pmul(A1[i],t1);
131
+ t2 += cj1.pmul(A0[i], rhs[i]);
132
+ t3 += cj1.pmul(A1[i], rhs[i]);
133
+ }
134
+
135
+ res[j] += alpha * (t2 + predux(ptmp2));
136
+ res[j+1] += alpha * (t3 + predux(ptmp3));
137
+ }
138
+ for (Index j=FirstTriangular ? 0 : bound;j<(FirstTriangular ? bound : size);j++)
139
+ {
140
+ const Scalar* EIGEN_RESTRICT A0 = lhs + j*lhsStride;
141
+
142
+ Scalar t1 = cjAlpha * rhs[j];
143
+ Scalar t2(0);
144
+ res[j] += cjd.pmul(numext::real(A0[j]), t1);
145
+ for (Index i=FirstTriangular ? 0 : j+1; i<(FirstTriangular ? j : size); i++)
146
+ {
147
+ res[i] += cj0.pmul(A0[i], t1);
148
+ t2 += cj1.pmul(A0[i], rhs[i]);
149
+ }
150
+ res[j] += alpha * t2;
151
+ }
152
+ }
153
+
154
+ } // end namespace internal
155
+
156
+ /***************************************************************************
157
+ * Wrapper to product_selfadjoint_vector
158
+ ***************************************************************************/
159
+
160
+ namespace internal {
161
+
162
+ template<typename Lhs, int LhsMode, typename Rhs>
163
+ struct selfadjoint_product_impl<Lhs,LhsMode,false,Rhs,0,true>
164
+ {
165
+ typedef typename Product<Lhs,Rhs>::Scalar Scalar;
166
+
167
+ typedef internal::blas_traits<Lhs> LhsBlasTraits;
168
+ typedef typename LhsBlasTraits::DirectLinearAccessType ActualLhsType;
169
+ typedef typename internal::remove_all<ActualLhsType>::type ActualLhsTypeCleaned;
170
+
171
+ typedef internal::blas_traits<Rhs> RhsBlasTraits;
172
+ typedef typename RhsBlasTraits::DirectLinearAccessType ActualRhsType;
173
+ typedef typename internal::remove_all<ActualRhsType>::type ActualRhsTypeCleaned;
174
+
175
+ enum { LhsUpLo = LhsMode&(Upper|Lower) };
176
+
177
+ template<typename Dest>
178
+ static void run(Dest& dest, const Lhs &a_lhs, const Rhs &a_rhs, const Scalar& alpha)
179
+ {
180
+ typedef typename Dest::Scalar ResScalar;
181
+ typedef typename Rhs::Scalar RhsScalar;
182
+ typedef Map<Matrix<ResScalar,Dynamic,1>, EIGEN_PLAIN_ENUM_MIN(AlignedMax,internal::packet_traits<ResScalar>::size)> MappedDest;
183
+
184
+ eigen_assert(dest.rows()==a_lhs.rows() && dest.cols()==a_rhs.cols());
185
+
186
+ typename internal::add_const_on_value_type<ActualLhsType>::type lhs = LhsBlasTraits::extract(a_lhs);
187
+ typename internal::add_const_on_value_type<ActualRhsType>::type rhs = RhsBlasTraits::extract(a_rhs);
188
+
189
+ Scalar actualAlpha = alpha * LhsBlasTraits::extractScalarFactor(a_lhs)
190
+ * RhsBlasTraits::extractScalarFactor(a_rhs);
191
+
192
+ enum {
193
+ EvalToDest = (Dest::InnerStrideAtCompileTime==1),
194
+ UseRhs = (ActualRhsTypeCleaned::InnerStrideAtCompileTime==1)
195
+ };
196
+
197
+ internal::gemv_static_vector_if<ResScalar,Dest::SizeAtCompileTime,Dest::MaxSizeAtCompileTime,!EvalToDest> static_dest;
198
+ internal::gemv_static_vector_if<RhsScalar,ActualRhsTypeCleaned::SizeAtCompileTime,ActualRhsTypeCleaned::MaxSizeAtCompileTime,!UseRhs> static_rhs;
199
+
200
+ ei_declare_aligned_stack_constructed_variable(ResScalar,actualDestPtr,dest.size(),
201
+ EvalToDest ? dest.data() : static_dest.data());
202
+
203
+ ei_declare_aligned_stack_constructed_variable(RhsScalar,actualRhsPtr,rhs.size(),
204
+ UseRhs ? const_cast<RhsScalar*>(rhs.data()) : static_rhs.data());
205
+
206
+ if(!EvalToDest)
207
+ {
208
+ #ifdef EIGEN_DENSE_STORAGE_CTOR_PLUGIN
209
+ Index size = dest.size();
210
+ EIGEN_DENSE_STORAGE_CTOR_PLUGIN
211
+ #endif
212
+ MappedDest(actualDestPtr, dest.size()) = dest;
213
+ }
214
+
215
+ if(!UseRhs)
216
+ {
217
+ #ifdef EIGEN_DENSE_STORAGE_CTOR_PLUGIN
218
+ Index size = rhs.size();
219
+ EIGEN_DENSE_STORAGE_CTOR_PLUGIN
220
+ #endif
221
+ Map<typename ActualRhsTypeCleaned::PlainObject>(actualRhsPtr, rhs.size()) = rhs;
222
+ }
223
+
224
+
225
+ internal::selfadjoint_matrix_vector_product<Scalar, Index, (internal::traits<ActualLhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor,
226
+ int(LhsUpLo), bool(LhsBlasTraits::NeedToConjugate), bool(RhsBlasTraits::NeedToConjugate)>::run
227
+ (
228
+ lhs.rows(), // size
229
+ &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info
230
+ actualRhsPtr, // rhs info
231
+ actualDestPtr, // result info
232
+ actualAlpha // scale factor
233
+ );
234
+
235
+ if(!EvalToDest)
236
+ dest = MappedDest(actualDestPtr, dest.size());
237
+ }
238
+ };
239
+
240
+ template<typename Lhs, typename Rhs, int RhsMode>
241
+ struct selfadjoint_product_impl<Lhs,0,true,Rhs,RhsMode,false>
242
+ {
243
+ typedef typename Product<Lhs,Rhs>::Scalar Scalar;
244
+ enum { RhsUpLo = RhsMode&(Upper|Lower) };
245
+
246
+ template<typename Dest>
247
+ static void run(Dest& dest, const Lhs &a_lhs, const Rhs &a_rhs, const Scalar& alpha)
248
+ {
249
+ // let's simply transpose the product
250
+ Transpose<Dest> destT(dest);
251
+ selfadjoint_product_impl<Transpose<const Rhs>, int(RhsUpLo)==Upper ? Lower : Upper, false,
252
+ Transpose<const Lhs>, 0, true>::run(destT, a_rhs.transpose(), a_lhs.transpose(), alpha);
253
+ }
254
+ };
255
+
256
+ } // end namespace internal
257
+
258
+ } // end namespace Eigen
259
+
260
+ #endif // EIGEN_SELFADJOINT_MATRIX_VECTOR_H