tomoto 0.1.0

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Files changed (420) hide show
  1. checksums.yaml +7 -0
  2. data/CHANGELOG.md +3 -0
  3. data/LICENSE.txt +22 -0
  4. data/README.md +123 -0
  5. data/ext/tomoto/ext.cpp +245 -0
  6. data/ext/tomoto/extconf.rb +28 -0
  7. data/lib/tomoto.rb +12 -0
  8. data/lib/tomoto/ct.rb +11 -0
  9. data/lib/tomoto/hdp.rb +11 -0
  10. data/lib/tomoto/lda.rb +67 -0
  11. data/lib/tomoto/version.rb +3 -0
  12. data/vendor/EigenRand/EigenRand/Core.h +1139 -0
  13. data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
  14. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
  15. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
  16. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
  17. data/vendor/EigenRand/EigenRand/EigenRand +19 -0
  18. data/vendor/EigenRand/EigenRand/Macro.h +24 -0
  19. data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
  20. data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
  21. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
  22. data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
  23. data/vendor/EigenRand/EigenRand/doc.h +220 -0
  24. data/vendor/EigenRand/LICENSE +21 -0
  25. data/vendor/EigenRand/README.md +288 -0
  26. data/vendor/eigen/COPYING.BSD +26 -0
  27. data/vendor/eigen/COPYING.GPL +674 -0
  28. data/vendor/eigen/COPYING.LGPL +502 -0
  29. data/vendor/eigen/COPYING.MINPACK +52 -0
  30. data/vendor/eigen/COPYING.MPL2 +373 -0
  31. data/vendor/eigen/COPYING.README +18 -0
  32. data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
  33. data/vendor/eigen/Eigen/Cholesky +46 -0
  34. data/vendor/eigen/Eigen/CholmodSupport +48 -0
  35. data/vendor/eigen/Eigen/Core +537 -0
  36. data/vendor/eigen/Eigen/Dense +7 -0
  37. data/vendor/eigen/Eigen/Eigen +2 -0
  38. data/vendor/eigen/Eigen/Eigenvalues +61 -0
  39. data/vendor/eigen/Eigen/Geometry +62 -0
  40. data/vendor/eigen/Eigen/Householder +30 -0
  41. data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
  42. data/vendor/eigen/Eigen/Jacobi +33 -0
  43. data/vendor/eigen/Eigen/LU +50 -0
  44. data/vendor/eigen/Eigen/MetisSupport +35 -0
  45. data/vendor/eigen/Eigen/OrderingMethods +73 -0
  46. data/vendor/eigen/Eigen/PaStiXSupport +48 -0
  47. data/vendor/eigen/Eigen/PardisoSupport +35 -0
  48. data/vendor/eigen/Eigen/QR +51 -0
  49. data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
  50. data/vendor/eigen/Eigen/SPQRSupport +34 -0
  51. data/vendor/eigen/Eigen/SVD +51 -0
  52. data/vendor/eigen/Eigen/Sparse +36 -0
  53. data/vendor/eigen/Eigen/SparseCholesky +45 -0
  54. data/vendor/eigen/Eigen/SparseCore +69 -0
  55. data/vendor/eigen/Eigen/SparseLU +46 -0
  56. data/vendor/eigen/Eigen/SparseQR +37 -0
  57. data/vendor/eigen/Eigen/StdDeque +27 -0
  58. data/vendor/eigen/Eigen/StdList +26 -0
  59. data/vendor/eigen/Eigen/StdVector +27 -0
  60. data/vendor/eigen/Eigen/SuperLUSupport +64 -0
  61. data/vendor/eigen/Eigen/UmfPackSupport +40 -0
  62. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
  63. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
  64. data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  65. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
  66. data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
  67. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
  68. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
  69. data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
  70. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
  71. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
  72. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
  73. data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
  74. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
  75. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
  76. data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
  77. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
  78. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
  79. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
  80. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
  81. data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  82. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
  84. data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
  85. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
  86. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
  87. data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
  88. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
  89. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
  90. data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
  91. data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
  92. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  93. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
  94. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
  95. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
  96. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
  97. data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
  98. data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
  99. data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
  100. data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
  101. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
  102. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
  103. data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
  104. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
  105. data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
  106. data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
  107. data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
  108. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
  109. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
  110. data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
  111. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
  112. data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
  113. data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
  114. data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
  115. data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
  116. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
  117. data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
  118. data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
  119. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
  120. data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  121. data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
  122. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
  123. data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
  124. data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
  125. data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
  126. data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
  127. data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
  128. data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
  129. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
  130. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
  131. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
  132. data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
  133. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
  134. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
  135. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
  136. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
  137. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
  138. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
  139. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
  140. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
  141. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
  142. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
  143. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
  145. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
  146. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
  148. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
  149. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
  153. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
  154. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
  156. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
  160. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
  161. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
  162. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
  163. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
  164. data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  165. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
  166. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
  167. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
  168. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
  169. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  170. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
  171. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
  172. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  173. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
  174. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
  175. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
  176. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
  177. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  178. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  179. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  180. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
  181. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
  182. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  183. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  184. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
  185. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
  186. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
  187. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
  188. data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
  189. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
  190. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  191. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
  192. data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
  193. data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
  194. data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
  195. data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
  196. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
  197. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
  198. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
  199. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  200. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
  201. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  202. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  203. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  204. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  205. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  206. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  207. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
  208. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
  209. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  210. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
  211. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  212. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
  213. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
  214. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
  215. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
  216. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
  217. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
  218. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
  219. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  220. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
  221. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
  222. data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
  223. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
  224. data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
  225. data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
  226. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
  227. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
  228. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
  229. data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
  230. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
  231. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  232. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
  233. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
  234. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
  235. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
  236. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
  237. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
  238. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
  239. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
  240. data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
  241. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
  242. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
  243. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
  244. data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  245. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
  246. data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  247. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
  248. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
  249. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
  250. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  251. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
  252. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
  253. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  254. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
  255. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
  256. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
  257. data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  258. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
  259. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
  260. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
  261. data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  262. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
  263. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  264. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
  265. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  266. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
  267. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
  268. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  269. data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  270. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
  271. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
  272. data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  273. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
  274. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
  275. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
  276. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
  277. data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  278. data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
  279. data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  280. data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
  281. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
  282. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
  283. data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  284. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
  285. data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
  295. data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  296. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
  297. data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  298. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  299. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  300. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  307. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  308. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  309. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  310. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  311. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  312. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  313. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
  314. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +126 -0
  315. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
  316. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
  317. data/vendor/eigen/Eigen/src/StlSupport/details.h +84 -0
  318. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
  319. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
  320. data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
  321. data/vendor/eigen/Eigen/src/misc/Kernel.h +79 -0
  322. data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
  323. data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
  324. data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
  325. data/vendor/eigen/Eigen/src/misc/lapacke.h +16291 -0
  326. data/vendor/eigen/Eigen/src/misc/lapacke_mangling.h +17 -0
  327. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +332 -0
  328. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
  329. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
  330. data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  331. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +163 -0
  332. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  333. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
  334. data/vendor/eigen/README.md +3 -0
  335. data/vendor/eigen/bench/README.txt +55 -0
  336. data/vendor/eigen/bench/btl/COPYING +340 -0
  337. data/vendor/eigen/bench/btl/README +154 -0
  338. data/vendor/eigen/bench/tensors/README +21 -0
  339. data/vendor/eigen/blas/README.txt +6 -0
  340. data/vendor/eigen/demos/mandelbrot/README +10 -0
  341. data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
  342. data/vendor/eigen/demos/opengl/README +13 -0
  343. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
  344. data/vendor/eigen/unsupported/README.txt +50 -0
  345. data/vendor/tomotopy/LICENSE +21 -0
  346. data/vendor/tomotopy/README.kr.rst +375 -0
  347. data/vendor/tomotopy/README.rst +382 -0
  348. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
  349. data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
  350. data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
  351. data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
  352. data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
  353. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
  354. data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
  355. data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
  356. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
  357. data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
  358. data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
  359. data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
  360. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
  361. data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
  362. data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
  363. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
  364. data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
  365. data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
  366. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
  367. data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
  368. data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
  369. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
  370. data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
  371. data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
  372. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
  373. data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
  374. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
  375. data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
  376. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
  377. data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
  378. data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
  379. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
  380. data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
  381. data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
  382. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
  383. data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
  384. data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
  385. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
  386. data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
  387. data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
  388. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
  389. data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
  390. data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
  391. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
  392. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
  393. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +169 -0
  394. data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
  395. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
  396. data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
  397. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
  398. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
  399. data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
  400. data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
  401. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
  402. data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
  403. data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
  404. data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
  405. data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
  406. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
  407. data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
  408. data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
  409. data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
  410. data/vendor/tomotopy/src/Utils/exception.h +28 -0
  411. data/vendor/tomotopy/src/Utils/math.h +281 -0
  412. data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
  413. data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
  414. data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
  415. data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
  416. data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
  417. data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
  418. data/vendor/tomotopy/src/Utils/text.hpp +49 -0
  419. data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
  420. metadata +531 -0
@@ -0,0 +1,452 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ // Copyright (C) 2006-2010 Benoit Jacob <jacob.benoit.1@gmail.com>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_BLOCK_H
12
+ #define EIGEN_BLOCK_H
13
+
14
+ namespace Eigen {
15
+
16
+ namespace internal {
17
+ template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel>
18
+ struct traits<Block<XprType, BlockRows, BlockCols, InnerPanel> > : traits<XprType>
19
+ {
20
+ typedef typename traits<XprType>::Scalar Scalar;
21
+ typedef typename traits<XprType>::StorageKind StorageKind;
22
+ typedef typename traits<XprType>::XprKind XprKind;
23
+ typedef typename ref_selector<XprType>::type XprTypeNested;
24
+ typedef typename remove_reference<XprTypeNested>::type _XprTypeNested;
25
+ enum{
26
+ MatrixRows = traits<XprType>::RowsAtCompileTime,
27
+ MatrixCols = traits<XprType>::ColsAtCompileTime,
28
+ RowsAtCompileTime = MatrixRows == 0 ? 0 : BlockRows,
29
+ ColsAtCompileTime = MatrixCols == 0 ? 0 : BlockCols,
30
+ MaxRowsAtCompileTime = BlockRows==0 ? 0
31
+ : RowsAtCompileTime != Dynamic ? int(RowsAtCompileTime)
32
+ : int(traits<XprType>::MaxRowsAtCompileTime),
33
+ MaxColsAtCompileTime = BlockCols==0 ? 0
34
+ : ColsAtCompileTime != Dynamic ? int(ColsAtCompileTime)
35
+ : int(traits<XprType>::MaxColsAtCompileTime),
36
+
37
+ XprTypeIsRowMajor = (int(traits<XprType>::Flags)&RowMajorBit) != 0,
38
+ IsRowMajor = (MaxRowsAtCompileTime==1&&MaxColsAtCompileTime!=1) ? 1
39
+ : (MaxColsAtCompileTime==1&&MaxRowsAtCompileTime!=1) ? 0
40
+ : XprTypeIsRowMajor,
41
+ HasSameStorageOrderAsXprType = (IsRowMajor == XprTypeIsRowMajor),
42
+ InnerSize = IsRowMajor ? int(ColsAtCompileTime) : int(RowsAtCompileTime),
43
+ InnerStrideAtCompileTime = HasSameStorageOrderAsXprType
44
+ ? int(inner_stride_at_compile_time<XprType>::ret)
45
+ : int(outer_stride_at_compile_time<XprType>::ret),
46
+ OuterStrideAtCompileTime = HasSameStorageOrderAsXprType
47
+ ? int(outer_stride_at_compile_time<XprType>::ret)
48
+ : int(inner_stride_at_compile_time<XprType>::ret),
49
+
50
+ // FIXME, this traits is rather specialized for dense object and it needs to be cleaned further
51
+ FlagsLvalueBit = is_lvalue<XprType>::value ? LvalueBit : 0,
52
+ FlagsRowMajorBit = IsRowMajor ? RowMajorBit : 0,
53
+ Flags = (traits<XprType>::Flags & (DirectAccessBit | (InnerPanel?CompressedAccessBit:0))) | FlagsLvalueBit | FlagsRowMajorBit,
54
+ // FIXME DirectAccessBit should not be handled by expressions
55
+ //
56
+ // Alignment is needed by MapBase's assertions
57
+ // We can sefely set it to false here. Internal alignment errors will be detected by an eigen_internal_assert in the respective evaluator
58
+ Alignment = 0
59
+ };
60
+ };
61
+
62
+ template<typename XprType, int BlockRows=Dynamic, int BlockCols=Dynamic, bool InnerPanel = false,
63
+ bool HasDirectAccess = internal::has_direct_access<XprType>::ret> class BlockImpl_dense;
64
+
65
+ } // end namespace internal
66
+
67
+ template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel, typename StorageKind> class BlockImpl;
68
+
69
+ /** \class Block
70
+ * \ingroup Core_Module
71
+ *
72
+ * \brief Expression of a fixed-size or dynamic-size block
73
+ *
74
+ * \tparam XprType the type of the expression in which we are taking a block
75
+ * \tparam BlockRows the number of rows of the block we are taking at compile time (optional)
76
+ * \tparam BlockCols the number of columns of the block we are taking at compile time (optional)
77
+ * \tparam InnerPanel is true, if the block maps to a set of rows of a row major matrix or
78
+ * to set of columns of a column major matrix (optional). The parameter allows to determine
79
+ * at compile time whether aligned access is possible on the block expression.
80
+ *
81
+ * This class represents an expression of either a fixed-size or dynamic-size block. It is the return
82
+ * type of DenseBase::block(Index,Index,Index,Index) and DenseBase::block<int,int>(Index,Index) and
83
+ * most of the time this is the only way it is used.
84
+ *
85
+ * However, if you want to directly maniputate block expressions,
86
+ * for instance if you want to write a function returning such an expression, you
87
+ * will need to use this class.
88
+ *
89
+ * Here is an example illustrating the dynamic case:
90
+ * \include class_Block.cpp
91
+ * Output: \verbinclude class_Block.out
92
+ *
93
+ * \note Even though this expression has dynamic size, in the case where \a XprType
94
+ * has fixed size, this expression inherits a fixed maximal size which means that evaluating
95
+ * it does not cause a dynamic memory allocation.
96
+ *
97
+ * Here is an example illustrating the fixed-size case:
98
+ * \include class_FixedBlock.cpp
99
+ * Output: \verbinclude class_FixedBlock.out
100
+ *
101
+ * \sa DenseBase::block(Index,Index,Index,Index), DenseBase::block(Index,Index), class VectorBlock
102
+ */
103
+ template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
104
+ : public BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, typename internal::traits<XprType>::StorageKind>
105
+ {
106
+ typedef BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, typename internal::traits<XprType>::StorageKind> Impl;
107
+ public:
108
+ //typedef typename Impl::Base Base;
109
+ typedef Impl Base;
110
+ EIGEN_GENERIC_PUBLIC_INTERFACE(Block)
111
+ EIGEN_INHERIT_ASSIGNMENT_OPERATORS(Block)
112
+
113
+ typedef typename internal::remove_all<XprType>::type NestedExpression;
114
+
115
+ /** Column or Row constructor
116
+ */
117
+ EIGEN_DEVICE_FUNC
118
+ inline Block(XprType& xpr, Index i) : Impl(xpr,i)
119
+ {
120
+ eigen_assert( (i>=0) && (
121
+ ((BlockRows==1) && (BlockCols==XprType::ColsAtCompileTime) && i<xpr.rows())
122
+ ||((BlockRows==XprType::RowsAtCompileTime) && (BlockCols==1) && i<xpr.cols())));
123
+ }
124
+
125
+ /** Fixed-size constructor
126
+ */
127
+ EIGEN_DEVICE_FUNC
128
+ inline Block(XprType& xpr, Index startRow, Index startCol)
129
+ : Impl(xpr, startRow, startCol)
130
+ {
131
+ EIGEN_STATIC_ASSERT(RowsAtCompileTime!=Dynamic && ColsAtCompileTime!=Dynamic,THIS_METHOD_IS_ONLY_FOR_FIXED_SIZE)
132
+ eigen_assert(startRow >= 0 && BlockRows >= 0 && startRow + BlockRows <= xpr.rows()
133
+ && startCol >= 0 && BlockCols >= 0 && startCol + BlockCols <= xpr.cols());
134
+ }
135
+
136
+ /** Dynamic-size constructor
137
+ */
138
+ EIGEN_DEVICE_FUNC
139
+ inline Block(XprType& xpr,
140
+ Index startRow, Index startCol,
141
+ Index blockRows, Index blockCols)
142
+ : Impl(xpr, startRow, startCol, blockRows, blockCols)
143
+ {
144
+ eigen_assert((RowsAtCompileTime==Dynamic || RowsAtCompileTime==blockRows)
145
+ && (ColsAtCompileTime==Dynamic || ColsAtCompileTime==blockCols));
146
+ eigen_assert(startRow >= 0 && blockRows >= 0 && startRow <= xpr.rows() - blockRows
147
+ && startCol >= 0 && blockCols >= 0 && startCol <= xpr.cols() - blockCols);
148
+ }
149
+ };
150
+
151
+ // The generic default implementation for dense block simplu forward to the internal::BlockImpl_dense
152
+ // that must be specialized for direct and non-direct access...
153
+ template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel>
154
+ class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
155
+ : public internal::BlockImpl_dense<XprType, BlockRows, BlockCols, InnerPanel>
156
+ {
157
+ typedef internal::BlockImpl_dense<XprType, BlockRows, BlockCols, InnerPanel> Impl;
158
+ typedef typename XprType::StorageIndex StorageIndex;
159
+ public:
160
+ typedef Impl Base;
161
+ EIGEN_INHERIT_ASSIGNMENT_OPERATORS(BlockImpl)
162
+ EIGEN_DEVICE_FUNC inline BlockImpl(XprType& xpr, Index i) : Impl(xpr,i) {}
163
+ EIGEN_DEVICE_FUNC inline BlockImpl(XprType& xpr, Index startRow, Index startCol) : Impl(xpr, startRow, startCol) {}
164
+ EIGEN_DEVICE_FUNC
165
+ inline BlockImpl(XprType& xpr, Index startRow, Index startCol, Index blockRows, Index blockCols)
166
+ : Impl(xpr, startRow, startCol, blockRows, blockCols) {}
167
+ };
168
+
169
+ namespace internal {
170
+
171
+ /** \internal Internal implementation of dense Blocks in the general case. */
172
+ template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel, bool HasDirectAccess> class BlockImpl_dense
173
+ : public internal::dense_xpr_base<Block<XprType, BlockRows, BlockCols, InnerPanel> >::type
174
+ {
175
+ typedef Block<XprType, BlockRows, BlockCols, InnerPanel> BlockType;
176
+ typedef typename internal::ref_selector<XprType>::non_const_type XprTypeNested;
177
+ public:
178
+
179
+ typedef typename internal::dense_xpr_base<BlockType>::type Base;
180
+ EIGEN_DENSE_PUBLIC_INTERFACE(BlockType)
181
+ EIGEN_INHERIT_ASSIGNMENT_OPERATORS(BlockImpl_dense)
182
+
183
+ // class InnerIterator; // FIXME apparently never used
184
+
185
+ /** Column or Row constructor
186
+ */
187
+ EIGEN_DEVICE_FUNC
188
+ inline BlockImpl_dense(XprType& xpr, Index i)
189
+ : m_xpr(xpr),
190
+ // It is a row if and only if BlockRows==1 and BlockCols==XprType::ColsAtCompileTime,
191
+ // and it is a column if and only if BlockRows==XprType::RowsAtCompileTime and BlockCols==1,
192
+ // all other cases are invalid.
193
+ // The case a 1x1 matrix seems ambiguous, but the result is the same anyway.
194
+ m_startRow( (BlockRows==1) && (BlockCols==XprType::ColsAtCompileTime) ? i : 0),
195
+ m_startCol( (BlockRows==XprType::RowsAtCompileTime) && (BlockCols==1) ? i : 0),
196
+ m_blockRows(BlockRows==1 ? 1 : xpr.rows()),
197
+ m_blockCols(BlockCols==1 ? 1 : xpr.cols())
198
+ {}
199
+
200
+ /** Fixed-size constructor
201
+ */
202
+ EIGEN_DEVICE_FUNC
203
+ inline BlockImpl_dense(XprType& xpr, Index startRow, Index startCol)
204
+ : m_xpr(xpr), m_startRow(startRow), m_startCol(startCol),
205
+ m_blockRows(BlockRows), m_blockCols(BlockCols)
206
+ {}
207
+
208
+ /** Dynamic-size constructor
209
+ */
210
+ EIGEN_DEVICE_FUNC
211
+ inline BlockImpl_dense(XprType& xpr,
212
+ Index startRow, Index startCol,
213
+ Index blockRows, Index blockCols)
214
+ : m_xpr(xpr), m_startRow(startRow), m_startCol(startCol),
215
+ m_blockRows(blockRows), m_blockCols(blockCols)
216
+ {}
217
+
218
+ EIGEN_DEVICE_FUNC inline Index rows() const { return m_blockRows.value(); }
219
+ EIGEN_DEVICE_FUNC inline Index cols() const { return m_blockCols.value(); }
220
+
221
+ EIGEN_DEVICE_FUNC
222
+ inline Scalar& coeffRef(Index rowId, Index colId)
223
+ {
224
+ EIGEN_STATIC_ASSERT_LVALUE(XprType)
225
+ return m_xpr.coeffRef(rowId + m_startRow.value(), colId + m_startCol.value());
226
+ }
227
+
228
+ EIGEN_DEVICE_FUNC
229
+ inline const Scalar& coeffRef(Index rowId, Index colId) const
230
+ {
231
+ return m_xpr.derived().coeffRef(rowId + m_startRow.value(), colId + m_startCol.value());
232
+ }
233
+
234
+ EIGEN_DEVICE_FUNC
235
+ EIGEN_STRONG_INLINE const CoeffReturnType coeff(Index rowId, Index colId) const
236
+ {
237
+ return m_xpr.coeff(rowId + m_startRow.value(), colId + m_startCol.value());
238
+ }
239
+
240
+ EIGEN_DEVICE_FUNC
241
+ inline Scalar& coeffRef(Index index)
242
+ {
243
+ EIGEN_STATIC_ASSERT_LVALUE(XprType)
244
+ return m_xpr.coeffRef(m_startRow.value() + (RowsAtCompileTime == 1 ? 0 : index),
245
+ m_startCol.value() + (RowsAtCompileTime == 1 ? index : 0));
246
+ }
247
+
248
+ EIGEN_DEVICE_FUNC
249
+ inline const Scalar& coeffRef(Index index) const
250
+ {
251
+ return m_xpr.coeffRef(m_startRow.value() + (RowsAtCompileTime == 1 ? 0 : index),
252
+ m_startCol.value() + (RowsAtCompileTime == 1 ? index : 0));
253
+ }
254
+
255
+ EIGEN_DEVICE_FUNC
256
+ inline const CoeffReturnType coeff(Index index) const
257
+ {
258
+ return m_xpr.coeff(m_startRow.value() + (RowsAtCompileTime == 1 ? 0 : index),
259
+ m_startCol.value() + (RowsAtCompileTime == 1 ? index : 0));
260
+ }
261
+
262
+ template<int LoadMode>
263
+ inline PacketScalar packet(Index rowId, Index colId) const
264
+ {
265
+ return m_xpr.template packet<Unaligned>(rowId + m_startRow.value(), colId + m_startCol.value());
266
+ }
267
+
268
+ template<int LoadMode>
269
+ inline void writePacket(Index rowId, Index colId, const PacketScalar& val)
270
+ {
271
+ m_xpr.template writePacket<Unaligned>(rowId + m_startRow.value(), colId + m_startCol.value(), val);
272
+ }
273
+
274
+ template<int LoadMode>
275
+ inline PacketScalar packet(Index index) const
276
+ {
277
+ return m_xpr.template packet<Unaligned>
278
+ (m_startRow.value() + (RowsAtCompileTime == 1 ? 0 : index),
279
+ m_startCol.value() + (RowsAtCompileTime == 1 ? index : 0));
280
+ }
281
+
282
+ template<int LoadMode>
283
+ inline void writePacket(Index index, const PacketScalar& val)
284
+ {
285
+ m_xpr.template writePacket<Unaligned>
286
+ (m_startRow.value() + (RowsAtCompileTime == 1 ? 0 : index),
287
+ m_startCol.value() + (RowsAtCompileTime == 1 ? index : 0), val);
288
+ }
289
+
290
+ #ifdef EIGEN_PARSED_BY_DOXYGEN
291
+ /** \sa MapBase::data() */
292
+ EIGEN_DEVICE_FUNC inline const Scalar* data() const;
293
+ EIGEN_DEVICE_FUNC inline Index innerStride() const;
294
+ EIGEN_DEVICE_FUNC inline Index outerStride() const;
295
+ #endif
296
+
297
+ EIGEN_DEVICE_FUNC
298
+ const typename internal::remove_all<XprTypeNested>::type& nestedExpression() const
299
+ {
300
+ return m_xpr;
301
+ }
302
+
303
+ EIGEN_DEVICE_FUNC
304
+ XprType& nestedExpression() { return m_xpr; }
305
+
306
+ EIGEN_DEVICE_FUNC
307
+ StorageIndex startRow() const
308
+ {
309
+ return m_startRow.value();
310
+ }
311
+
312
+ EIGEN_DEVICE_FUNC
313
+ StorageIndex startCol() const
314
+ {
315
+ return m_startCol.value();
316
+ }
317
+
318
+ protected:
319
+
320
+ XprTypeNested m_xpr;
321
+ const internal::variable_if_dynamic<StorageIndex, (XprType::RowsAtCompileTime == 1 && BlockRows==1) ? 0 : Dynamic> m_startRow;
322
+ const internal::variable_if_dynamic<StorageIndex, (XprType::ColsAtCompileTime == 1 && BlockCols==1) ? 0 : Dynamic> m_startCol;
323
+ const internal::variable_if_dynamic<StorageIndex, RowsAtCompileTime> m_blockRows;
324
+ const internal::variable_if_dynamic<StorageIndex, ColsAtCompileTime> m_blockCols;
325
+ };
326
+
327
+ /** \internal Internal implementation of dense Blocks in the direct access case.*/
328
+ template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel>
329
+ class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
330
+ : public MapBase<Block<XprType, BlockRows, BlockCols, InnerPanel> >
331
+ {
332
+ typedef Block<XprType, BlockRows, BlockCols, InnerPanel> BlockType;
333
+ typedef typename internal::ref_selector<XprType>::non_const_type XprTypeNested;
334
+ enum {
335
+ XprTypeIsRowMajor = (int(traits<XprType>::Flags)&RowMajorBit) != 0
336
+ };
337
+ public:
338
+
339
+ typedef MapBase<BlockType> Base;
340
+ EIGEN_DENSE_PUBLIC_INTERFACE(BlockType)
341
+ EIGEN_INHERIT_ASSIGNMENT_OPERATORS(BlockImpl_dense)
342
+
343
+ /** Column or Row constructor
344
+ */
345
+ EIGEN_DEVICE_FUNC
346
+ inline BlockImpl_dense(XprType& xpr, Index i)
347
+ : Base(xpr.data() + i * ( ((BlockRows==1) && (BlockCols==XprType::ColsAtCompileTime) && (!XprTypeIsRowMajor))
348
+ || ((BlockRows==XprType::RowsAtCompileTime) && (BlockCols==1) && ( XprTypeIsRowMajor)) ? xpr.innerStride() : xpr.outerStride()),
349
+ BlockRows==1 ? 1 : xpr.rows(),
350
+ BlockCols==1 ? 1 : xpr.cols()),
351
+ m_xpr(xpr),
352
+ m_startRow( (BlockRows==1) && (BlockCols==XprType::ColsAtCompileTime) ? i : 0),
353
+ m_startCol( (BlockRows==XprType::RowsAtCompileTime) && (BlockCols==1) ? i : 0)
354
+ {
355
+ init();
356
+ }
357
+
358
+ /** Fixed-size constructor
359
+ */
360
+ EIGEN_DEVICE_FUNC
361
+ inline BlockImpl_dense(XprType& xpr, Index startRow, Index startCol)
362
+ : Base(xpr.data()+xpr.innerStride()*(XprTypeIsRowMajor?startCol:startRow) + xpr.outerStride()*(XprTypeIsRowMajor?startRow:startCol)),
363
+ m_xpr(xpr), m_startRow(startRow), m_startCol(startCol)
364
+ {
365
+ init();
366
+ }
367
+
368
+ /** Dynamic-size constructor
369
+ */
370
+ EIGEN_DEVICE_FUNC
371
+ inline BlockImpl_dense(XprType& xpr,
372
+ Index startRow, Index startCol,
373
+ Index blockRows, Index blockCols)
374
+ : Base(xpr.data()+xpr.innerStride()*(XprTypeIsRowMajor?startCol:startRow) + xpr.outerStride()*(XprTypeIsRowMajor?startRow:startCol), blockRows, blockCols),
375
+ m_xpr(xpr), m_startRow(startRow), m_startCol(startCol)
376
+ {
377
+ init();
378
+ }
379
+
380
+ EIGEN_DEVICE_FUNC
381
+ const typename internal::remove_all<XprTypeNested>::type& nestedExpression() const
382
+ {
383
+ return m_xpr;
384
+ }
385
+
386
+ EIGEN_DEVICE_FUNC
387
+ XprType& nestedExpression() { return m_xpr; }
388
+
389
+ /** \sa MapBase::innerStride() */
390
+ EIGEN_DEVICE_FUNC
391
+ inline Index innerStride() const
392
+ {
393
+ return internal::traits<BlockType>::HasSameStorageOrderAsXprType
394
+ ? m_xpr.innerStride()
395
+ : m_xpr.outerStride();
396
+ }
397
+
398
+ /** \sa MapBase::outerStride() */
399
+ EIGEN_DEVICE_FUNC
400
+ inline Index outerStride() const
401
+ {
402
+ return m_outerStride;
403
+ }
404
+
405
+ EIGEN_DEVICE_FUNC
406
+ StorageIndex startRow() const
407
+ {
408
+ return m_startRow.value();
409
+ }
410
+
411
+ EIGEN_DEVICE_FUNC
412
+ StorageIndex startCol() const
413
+ {
414
+ return m_startCol.value();
415
+ }
416
+
417
+ #ifndef __SUNPRO_CC
418
+ // FIXME sunstudio is not friendly with the above friend...
419
+ // META-FIXME there is no 'friend' keyword around here. Is this obsolete?
420
+ protected:
421
+ #endif
422
+
423
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
424
+ /** \internal used by allowAligned() */
425
+ EIGEN_DEVICE_FUNC
426
+ inline BlockImpl_dense(XprType& xpr, const Scalar* data, Index blockRows, Index blockCols)
427
+ : Base(data, blockRows, blockCols), m_xpr(xpr)
428
+ {
429
+ init();
430
+ }
431
+ #endif
432
+
433
+ protected:
434
+ EIGEN_DEVICE_FUNC
435
+ void init()
436
+ {
437
+ m_outerStride = internal::traits<BlockType>::HasSameStorageOrderAsXprType
438
+ ? m_xpr.outerStride()
439
+ : m_xpr.innerStride();
440
+ }
441
+
442
+ XprTypeNested m_xpr;
443
+ const internal::variable_if_dynamic<StorageIndex, (XprType::RowsAtCompileTime == 1 && BlockRows==1) ? 0 : Dynamic> m_startRow;
444
+ const internal::variable_if_dynamic<StorageIndex, (XprType::ColsAtCompileTime == 1 && BlockCols==1) ? 0 : Dynamic> m_startCol;
445
+ Index m_outerStride;
446
+ };
447
+
448
+ } // end namespace internal
449
+
450
+ } // end namespace Eigen
451
+
452
+ #endif // EIGEN_BLOCK_H
@@ -0,0 +1,164 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_ALLANDANY_H
11
+ #define EIGEN_ALLANDANY_H
12
+
13
+ namespace Eigen {
14
+
15
+ namespace internal {
16
+
17
+ template<typename Derived, int UnrollCount>
18
+ struct all_unroller
19
+ {
20
+ typedef typename Derived::ExpressionTraits Traits;
21
+ enum {
22
+ col = (UnrollCount-1) / Traits::RowsAtCompileTime,
23
+ row = (UnrollCount-1) % Traits::RowsAtCompileTime
24
+ };
25
+
26
+ static inline bool run(const Derived &mat)
27
+ {
28
+ return all_unroller<Derived, UnrollCount-1>::run(mat) && mat.coeff(row, col);
29
+ }
30
+ };
31
+
32
+ template<typename Derived>
33
+ struct all_unroller<Derived, 0>
34
+ {
35
+ static inline bool run(const Derived &/*mat*/) { return true; }
36
+ };
37
+
38
+ template<typename Derived>
39
+ struct all_unroller<Derived, Dynamic>
40
+ {
41
+ static inline bool run(const Derived &) { return false; }
42
+ };
43
+
44
+ template<typename Derived, int UnrollCount>
45
+ struct any_unroller
46
+ {
47
+ typedef typename Derived::ExpressionTraits Traits;
48
+ enum {
49
+ col = (UnrollCount-1) / Traits::RowsAtCompileTime,
50
+ row = (UnrollCount-1) % Traits::RowsAtCompileTime
51
+ };
52
+
53
+ static inline bool run(const Derived &mat)
54
+ {
55
+ return any_unroller<Derived, UnrollCount-1>::run(mat) || mat.coeff(row, col);
56
+ }
57
+ };
58
+
59
+ template<typename Derived>
60
+ struct any_unroller<Derived, 0>
61
+ {
62
+ static inline bool run(const Derived & /*mat*/) { return false; }
63
+ };
64
+
65
+ template<typename Derived>
66
+ struct any_unroller<Derived, Dynamic>
67
+ {
68
+ static inline bool run(const Derived &) { return false; }
69
+ };
70
+
71
+ } // end namespace internal
72
+
73
+ /** \returns true if all coefficients are true
74
+ *
75
+ * Example: \include MatrixBase_all.cpp
76
+ * Output: \verbinclude MatrixBase_all.out
77
+ *
78
+ * \sa any(), Cwise::operator<()
79
+ */
80
+ template<typename Derived>
81
+ inline bool DenseBase<Derived>::all() const
82
+ {
83
+ typedef internal::evaluator<Derived> Evaluator;
84
+ enum {
85
+ unroll = SizeAtCompileTime != Dynamic
86
+ && SizeAtCompileTime * (Evaluator::CoeffReadCost + NumTraits<Scalar>::AddCost) <= EIGEN_UNROLLING_LIMIT
87
+ };
88
+ Evaluator evaluator(derived());
89
+ if(unroll)
90
+ return internal::all_unroller<Evaluator, unroll ? int(SizeAtCompileTime) : Dynamic>::run(evaluator);
91
+ else
92
+ {
93
+ for(Index j = 0; j < cols(); ++j)
94
+ for(Index i = 0; i < rows(); ++i)
95
+ if (!evaluator.coeff(i, j)) return false;
96
+ return true;
97
+ }
98
+ }
99
+
100
+ /** \returns true if at least one coefficient is true
101
+ *
102
+ * \sa all()
103
+ */
104
+ template<typename Derived>
105
+ inline bool DenseBase<Derived>::any() const
106
+ {
107
+ typedef internal::evaluator<Derived> Evaluator;
108
+ enum {
109
+ unroll = SizeAtCompileTime != Dynamic
110
+ && SizeAtCompileTime * (Evaluator::CoeffReadCost + NumTraits<Scalar>::AddCost) <= EIGEN_UNROLLING_LIMIT
111
+ };
112
+ Evaluator evaluator(derived());
113
+ if(unroll)
114
+ return internal::any_unroller<Evaluator, unroll ? int(SizeAtCompileTime) : Dynamic>::run(evaluator);
115
+ else
116
+ {
117
+ for(Index j = 0; j < cols(); ++j)
118
+ for(Index i = 0; i < rows(); ++i)
119
+ if (evaluator.coeff(i, j)) return true;
120
+ return false;
121
+ }
122
+ }
123
+
124
+ /** \returns the number of coefficients which evaluate to true
125
+ *
126
+ * \sa all(), any()
127
+ */
128
+ template<typename Derived>
129
+ inline Eigen::Index DenseBase<Derived>::count() const
130
+ {
131
+ return derived().template cast<bool>().template cast<Index>().sum();
132
+ }
133
+
134
+ /** \returns true is \c *this contains at least one Not A Number (NaN).
135
+ *
136
+ * \sa allFinite()
137
+ */
138
+ template<typename Derived>
139
+ inline bool DenseBase<Derived>::hasNaN() const
140
+ {
141
+ #if EIGEN_COMP_MSVC || (defined __FAST_MATH__)
142
+ return derived().array().isNaN().any();
143
+ #else
144
+ return !((derived().array()==derived().array()).all());
145
+ #endif
146
+ }
147
+
148
+ /** \returns true if \c *this contains only finite numbers, i.e., no NaN and no +/-INF values.
149
+ *
150
+ * \sa hasNaN()
151
+ */
152
+ template<typename Derived>
153
+ inline bool DenseBase<Derived>::allFinite() const
154
+ {
155
+ #if EIGEN_COMP_MSVC || (defined __FAST_MATH__)
156
+ return derived().array().isFinite().all();
157
+ #else
158
+ return !((derived()-derived()).hasNaN());
159
+ #endif
160
+ }
161
+
162
+ } // end namespace Eigen
163
+
164
+ #endif // EIGEN_ALLANDANY_H