tomoto 0.1.0

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Files changed (420) hide show
  1. checksums.yaml +7 -0
  2. data/CHANGELOG.md +3 -0
  3. data/LICENSE.txt +22 -0
  4. data/README.md +123 -0
  5. data/ext/tomoto/ext.cpp +245 -0
  6. data/ext/tomoto/extconf.rb +28 -0
  7. data/lib/tomoto.rb +12 -0
  8. data/lib/tomoto/ct.rb +11 -0
  9. data/lib/tomoto/hdp.rb +11 -0
  10. data/lib/tomoto/lda.rb +67 -0
  11. data/lib/tomoto/version.rb +3 -0
  12. data/vendor/EigenRand/EigenRand/Core.h +1139 -0
  13. data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
  14. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
  15. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
  16. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
  17. data/vendor/EigenRand/EigenRand/EigenRand +19 -0
  18. data/vendor/EigenRand/EigenRand/Macro.h +24 -0
  19. data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
  20. data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
  21. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
  22. data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
  23. data/vendor/EigenRand/EigenRand/doc.h +220 -0
  24. data/vendor/EigenRand/LICENSE +21 -0
  25. data/vendor/EigenRand/README.md +288 -0
  26. data/vendor/eigen/COPYING.BSD +26 -0
  27. data/vendor/eigen/COPYING.GPL +674 -0
  28. data/vendor/eigen/COPYING.LGPL +502 -0
  29. data/vendor/eigen/COPYING.MINPACK +52 -0
  30. data/vendor/eigen/COPYING.MPL2 +373 -0
  31. data/vendor/eigen/COPYING.README +18 -0
  32. data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
  33. data/vendor/eigen/Eigen/Cholesky +46 -0
  34. data/vendor/eigen/Eigen/CholmodSupport +48 -0
  35. data/vendor/eigen/Eigen/Core +537 -0
  36. data/vendor/eigen/Eigen/Dense +7 -0
  37. data/vendor/eigen/Eigen/Eigen +2 -0
  38. data/vendor/eigen/Eigen/Eigenvalues +61 -0
  39. data/vendor/eigen/Eigen/Geometry +62 -0
  40. data/vendor/eigen/Eigen/Householder +30 -0
  41. data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
  42. data/vendor/eigen/Eigen/Jacobi +33 -0
  43. data/vendor/eigen/Eigen/LU +50 -0
  44. data/vendor/eigen/Eigen/MetisSupport +35 -0
  45. data/vendor/eigen/Eigen/OrderingMethods +73 -0
  46. data/vendor/eigen/Eigen/PaStiXSupport +48 -0
  47. data/vendor/eigen/Eigen/PardisoSupport +35 -0
  48. data/vendor/eigen/Eigen/QR +51 -0
  49. data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
  50. data/vendor/eigen/Eigen/SPQRSupport +34 -0
  51. data/vendor/eigen/Eigen/SVD +51 -0
  52. data/vendor/eigen/Eigen/Sparse +36 -0
  53. data/vendor/eigen/Eigen/SparseCholesky +45 -0
  54. data/vendor/eigen/Eigen/SparseCore +69 -0
  55. data/vendor/eigen/Eigen/SparseLU +46 -0
  56. data/vendor/eigen/Eigen/SparseQR +37 -0
  57. data/vendor/eigen/Eigen/StdDeque +27 -0
  58. data/vendor/eigen/Eigen/StdList +26 -0
  59. data/vendor/eigen/Eigen/StdVector +27 -0
  60. data/vendor/eigen/Eigen/SuperLUSupport +64 -0
  61. data/vendor/eigen/Eigen/UmfPackSupport +40 -0
  62. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
  63. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
  64. data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  65. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
  66. data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
  67. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
  68. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
  69. data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
  70. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
  71. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
  72. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
  73. data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
  74. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
  75. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
  76. data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
  77. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
  78. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
  79. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
  80. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
  81. data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  82. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
  84. data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
  85. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
  86. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
  87. data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
  88. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
  89. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
  90. data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
  91. data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
  92. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  93. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
  94. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
  95. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
  96. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
  97. data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
  98. data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
  99. data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
  100. data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
  101. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
  102. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
  103. data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
  104. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
  105. data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
  106. data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
  107. data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
  108. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
  109. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
  110. data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
  111. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
  112. data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
  113. data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
  114. data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
  115. data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
  116. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
  117. data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
  118. data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
  119. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
  120. data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  121. data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
  122. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
  123. data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
  124. data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
  125. data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
  126. data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
  127. data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
  128. data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
  129. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
  130. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
  131. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
  132. data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
  133. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
  134. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
  135. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
  136. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
  137. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
  138. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
  139. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
  140. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
  141. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
  142. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
  143. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
  145. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
  146. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
  148. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
  149. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
  153. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
  154. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
  156. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
  160. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
  161. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
  162. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
  163. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
  164. data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  165. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
  166. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
  167. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
  168. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
  169. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  170. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
  171. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
  172. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  173. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
  174. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
  175. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
  176. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
  177. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  178. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  179. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  180. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
  181. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
  182. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  183. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  184. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
  185. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
  186. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
  187. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
  188. data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
  189. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
  190. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  191. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
  192. data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
  193. data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
  194. data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
  195. data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
  196. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
  197. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
  198. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
  199. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  200. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
  201. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  202. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  203. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  204. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  205. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  206. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  207. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
  208. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
  209. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  210. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
  211. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  212. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
  213. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
  214. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
  215. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
  216. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
  217. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
  218. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
  219. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  220. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
  221. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
  222. data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
  223. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
  224. data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
  225. data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
  226. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
  227. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
  228. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
  229. data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
  230. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
  231. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  232. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
  233. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
  234. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
  235. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
  236. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
  237. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
  238. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
  239. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
  240. data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
  241. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
  242. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
  243. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
  244. data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  245. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
  246. data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  247. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
  248. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
  249. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
  250. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  251. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
  252. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
  253. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  254. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
  255. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
  256. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
  257. data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  258. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
  259. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
  260. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
  261. data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  262. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
  263. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  264. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
  265. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  266. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
  267. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
  268. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  269. data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  270. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
  271. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
  272. data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  273. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
  274. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
  275. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
  276. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
  277. data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  278. data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
  279. data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  280. data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
  281. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
  282. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
  283. data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  284. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
  285. data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
  295. data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  296. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
  297. data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  298. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  299. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  300. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  307. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  308. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  309. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  310. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  311. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  312. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  313. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
  314. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +126 -0
  315. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
  316. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
  317. data/vendor/eigen/Eigen/src/StlSupport/details.h +84 -0
  318. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
  319. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
  320. data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
  321. data/vendor/eigen/Eigen/src/misc/Kernel.h +79 -0
  322. data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
  323. data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
  324. data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
  325. data/vendor/eigen/Eigen/src/misc/lapacke.h +16291 -0
  326. data/vendor/eigen/Eigen/src/misc/lapacke_mangling.h +17 -0
  327. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +332 -0
  328. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
  329. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
  330. data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  331. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +163 -0
  332. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  333. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
  334. data/vendor/eigen/README.md +3 -0
  335. data/vendor/eigen/bench/README.txt +55 -0
  336. data/vendor/eigen/bench/btl/COPYING +340 -0
  337. data/vendor/eigen/bench/btl/README +154 -0
  338. data/vendor/eigen/bench/tensors/README +21 -0
  339. data/vendor/eigen/blas/README.txt +6 -0
  340. data/vendor/eigen/demos/mandelbrot/README +10 -0
  341. data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
  342. data/vendor/eigen/demos/opengl/README +13 -0
  343. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
  344. data/vendor/eigen/unsupported/README.txt +50 -0
  345. data/vendor/tomotopy/LICENSE +21 -0
  346. data/vendor/tomotopy/README.kr.rst +375 -0
  347. data/vendor/tomotopy/README.rst +382 -0
  348. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
  349. data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
  350. data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
  351. data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
  352. data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
  353. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
  354. data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
  355. data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
  356. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
  357. data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
  358. data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
  359. data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
  360. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
  361. data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
  362. data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
  363. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
  364. data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
  365. data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
  366. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
  367. data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
  368. data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
  369. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
  370. data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
  371. data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
  372. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
  373. data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
  374. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
  375. data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
  376. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
  377. data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
  378. data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
  379. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
  380. data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
  381. data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
  382. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
  383. data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
  384. data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
  385. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
  386. data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
  387. data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
  388. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
  389. data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
  390. data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
  391. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
  392. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
  393. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +169 -0
  394. data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
  395. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
  396. data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
  397. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
  398. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
  399. data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
  400. data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
  401. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
  402. data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
  403. data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
  404. data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
  405. data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
  406. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
  407. data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
  408. data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
  409. data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
  410. data/vendor/tomotopy/src/Utils/exception.h +28 -0
  411. data/vendor/tomotopy/src/Utils/math.h +281 -0
  412. data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
  413. data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
  414. data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
  415. data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
  416. data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
  417. data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
  418. data/vendor/tomotopy/src/Utils/text.hpp +49 -0
  419. data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
  420. metadata +531 -0
@@ -0,0 +1,138 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2009-2015 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_SPARSE_DIAGONAL_PRODUCT_H
11
+ #define EIGEN_SPARSE_DIAGONAL_PRODUCT_H
12
+
13
+ namespace Eigen {
14
+
15
+ // The product of a diagonal matrix with a sparse matrix can be easily
16
+ // implemented using expression template.
17
+ // We have two consider very different cases:
18
+ // 1 - diag * row-major sparse
19
+ // => each inner vector <=> scalar * sparse vector product
20
+ // => so we can reuse CwiseUnaryOp::InnerIterator
21
+ // 2 - diag * col-major sparse
22
+ // => each inner vector <=> densevector * sparse vector cwise product
23
+ // => again, we can reuse specialization of CwiseBinaryOp::InnerIterator
24
+ // for that particular case
25
+ // The two other cases are symmetric.
26
+
27
+ namespace internal {
28
+
29
+ enum {
30
+ SDP_AsScalarProduct,
31
+ SDP_AsCwiseProduct
32
+ };
33
+
34
+ template<typename SparseXprType, typename DiagonalCoeffType, int SDP_Tag>
35
+ struct sparse_diagonal_product_evaluator;
36
+
37
+ template<typename Lhs, typename Rhs, int ProductTag>
38
+ struct product_evaluator<Product<Lhs, Rhs, DefaultProduct>, ProductTag, DiagonalShape, SparseShape>
39
+ : public sparse_diagonal_product_evaluator<Rhs, typename Lhs::DiagonalVectorType, Rhs::Flags&RowMajorBit?SDP_AsScalarProduct:SDP_AsCwiseProduct>
40
+ {
41
+ typedef Product<Lhs, Rhs, DefaultProduct> XprType;
42
+ enum { CoeffReadCost = HugeCost, Flags = Rhs::Flags&RowMajorBit, Alignment = 0 }; // FIXME CoeffReadCost & Flags
43
+
44
+ typedef sparse_diagonal_product_evaluator<Rhs, typename Lhs::DiagonalVectorType, Rhs::Flags&RowMajorBit?SDP_AsScalarProduct:SDP_AsCwiseProduct> Base;
45
+ explicit product_evaluator(const XprType& xpr) : Base(xpr.rhs(), xpr.lhs().diagonal()) {}
46
+ };
47
+
48
+ template<typename Lhs, typename Rhs, int ProductTag>
49
+ struct product_evaluator<Product<Lhs, Rhs, DefaultProduct>, ProductTag, SparseShape, DiagonalShape>
50
+ : public sparse_diagonal_product_evaluator<Lhs, Transpose<const typename Rhs::DiagonalVectorType>, Lhs::Flags&RowMajorBit?SDP_AsCwiseProduct:SDP_AsScalarProduct>
51
+ {
52
+ typedef Product<Lhs, Rhs, DefaultProduct> XprType;
53
+ enum { CoeffReadCost = HugeCost, Flags = Lhs::Flags&RowMajorBit, Alignment = 0 }; // FIXME CoeffReadCost & Flags
54
+
55
+ typedef sparse_diagonal_product_evaluator<Lhs, Transpose<const typename Rhs::DiagonalVectorType>, Lhs::Flags&RowMajorBit?SDP_AsCwiseProduct:SDP_AsScalarProduct> Base;
56
+ explicit product_evaluator(const XprType& xpr) : Base(xpr.lhs(), xpr.rhs().diagonal().transpose()) {}
57
+ };
58
+
59
+ template<typename SparseXprType, typename DiagonalCoeffType>
60
+ struct sparse_diagonal_product_evaluator<SparseXprType, DiagonalCoeffType, SDP_AsScalarProduct>
61
+ {
62
+ protected:
63
+ typedef typename evaluator<SparseXprType>::InnerIterator SparseXprInnerIterator;
64
+ typedef typename SparseXprType::Scalar Scalar;
65
+
66
+ public:
67
+ class InnerIterator : public SparseXprInnerIterator
68
+ {
69
+ public:
70
+ InnerIterator(const sparse_diagonal_product_evaluator &xprEval, Index outer)
71
+ : SparseXprInnerIterator(xprEval.m_sparseXprImpl, outer),
72
+ m_coeff(xprEval.m_diagCoeffImpl.coeff(outer))
73
+ {}
74
+
75
+ EIGEN_STRONG_INLINE Scalar value() const { return m_coeff * SparseXprInnerIterator::value(); }
76
+ protected:
77
+ typename DiagonalCoeffType::Scalar m_coeff;
78
+ };
79
+
80
+ sparse_diagonal_product_evaluator(const SparseXprType &sparseXpr, const DiagonalCoeffType &diagCoeff)
81
+ : m_sparseXprImpl(sparseXpr), m_diagCoeffImpl(diagCoeff)
82
+ {}
83
+
84
+ Index nonZerosEstimate() const { return m_sparseXprImpl.nonZerosEstimate(); }
85
+
86
+ protected:
87
+ evaluator<SparseXprType> m_sparseXprImpl;
88
+ evaluator<DiagonalCoeffType> m_diagCoeffImpl;
89
+ };
90
+
91
+
92
+ template<typename SparseXprType, typename DiagCoeffType>
93
+ struct sparse_diagonal_product_evaluator<SparseXprType, DiagCoeffType, SDP_AsCwiseProduct>
94
+ {
95
+ typedef typename SparseXprType::Scalar Scalar;
96
+ typedef typename SparseXprType::StorageIndex StorageIndex;
97
+
98
+ typedef typename nested_eval<DiagCoeffType,SparseXprType::IsRowMajor ? SparseXprType::RowsAtCompileTime
99
+ : SparseXprType::ColsAtCompileTime>::type DiagCoeffNested;
100
+
101
+ class InnerIterator
102
+ {
103
+ typedef typename evaluator<SparseXprType>::InnerIterator SparseXprIter;
104
+ public:
105
+ InnerIterator(const sparse_diagonal_product_evaluator &xprEval, Index outer)
106
+ : m_sparseIter(xprEval.m_sparseXprEval, outer), m_diagCoeffNested(xprEval.m_diagCoeffNested)
107
+ {}
108
+
109
+ inline Scalar value() const { return m_sparseIter.value() * m_diagCoeffNested.coeff(index()); }
110
+ inline StorageIndex index() const { return m_sparseIter.index(); }
111
+ inline Index outer() const { return m_sparseIter.outer(); }
112
+ inline Index col() const { return SparseXprType::IsRowMajor ? m_sparseIter.index() : m_sparseIter.outer(); }
113
+ inline Index row() const { return SparseXprType::IsRowMajor ? m_sparseIter.outer() : m_sparseIter.index(); }
114
+
115
+ EIGEN_STRONG_INLINE InnerIterator& operator++() { ++m_sparseIter; return *this; }
116
+ inline operator bool() const { return m_sparseIter; }
117
+
118
+ protected:
119
+ SparseXprIter m_sparseIter;
120
+ DiagCoeffNested m_diagCoeffNested;
121
+ };
122
+
123
+ sparse_diagonal_product_evaluator(const SparseXprType &sparseXpr, const DiagCoeffType &diagCoeff)
124
+ : m_sparseXprEval(sparseXpr), m_diagCoeffNested(diagCoeff)
125
+ {}
126
+
127
+ Index nonZerosEstimate() const { return m_sparseXprEval.nonZerosEstimate(); }
128
+
129
+ protected:
130
+ evaluator<SparseXprType> m_sparseXprEval;
131
+ DiagCoeffNested m_diagCoeffNested;
132
+ };
133
+
134
+ } // end namespace internal
135
+
136
+ } // end namespace Eigen
137
+
138
+ #endif // EIGEN_SPARSE_DIAGONAL_PRODUCT_H
@@ -0,0 +1,98 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_SPARSE_DOT_H
11
+ #define EIGEN_SPARSE_DOT_H
12
+
13
+ namespace Eigen {
14
+
15
+ template<typename Derived>
16
+ template<typename OtherDerived>
17
+ typename internal::traits<Derived>::Scalar
18
+ SparseMatrixBase<Derived>::dot(const MatrixBase<OtherDerived>& other) const
19
+ {
20
+ EIGEN_STATIC_ASSERT_VECTOR_ONLY(Derived)
21
+ EIGEN_STATIC_ASSERT_VECTOR_ONLY(OtherDerived)
22
+ EIGEN_STATIC_ASSERT_SAME_VECTOR_SIZE(Derived,OtherDerived)
23
+ EIGEN_STATIC_ASSERT((internal::is_same<Scalar, typename OtherDerived::Scalar>::value),
24
+ YOU_MIXED_DIFFERENT_NUMERIC_TYPES__YOU_NEED_TO_USE_THE_CAST_METHOD_OF_MATRIXBASE_TO_CAST_NUMERIC_TYPES_EXPLICITLY)
25
+
26
+ eigen_assert(size() == other.size());
27
+ eigen_assert(other.size()>0 && "you are using a non initialized vector");
28
+
29
+ internal::evaluator<Derived> thisEval(derived());
30
+ typename internal::evaluator<Derived>::InnerIterator i(thisEval, 0);
31
+ Scalar res(0);
32
+ while (i)
33
+ {
34
+ res += numext::conj(i.value()) * other.coeff(i.index());
35
+ ++i;
36
+ }
37
+ return res;
38
+ }
39
+
40
+ template<typename Derived>
41
+ template<typename OtherDerived>
42
+ typename internal::traits<Derived>::Scalar
43
+ SparseMatrixBase<Derived>::dot(const SparseMatrixBase<OtherDerived>& other) const
44
+ {
45
+ EIGEN_STATIC_ASSERT_VECTOR_ONLY(Derived)
46
+ EIGEN_STATIC_ASSERT_VECTOR_ONLY(OtherDerived)
47
+ EIGEN_STATIC_ASSERT_SAME_VECTOR_SIZE(Derived,OtherDerived)
48
+ EIGEN_STATIC_ASSERT((internal::is_same<Scalar, typename OtherDerived::Scalar>::value),
49
+ YOU_MIXED_DIFFERENT_NUMERIC_TYPES__YOU_NEED_TO_USE_THE_CAST_METHOD_OF_MATRIXBASE_TO_CAST_NUMERIC_TYPES_EXPLICITLY)
50
+
51
+ eigen_assert(size() == other.size());
52
+
53
+ internal::evaluator<Derived> thisEval(derived());
54
+ typename internal::evaluator<Derived>::InnerIterator i(thisEval, 0);
55
+
56
+ internal::evaluator<OtherDerived> otherEval(other.derived());
57
+ typename internal::evaluator<OtherDerived>::InnerIterator j(otherEval, 0);
58
+
59
+ Scalar res(0);
60
+ while (i && j)
61
+ {
62
+ if (i.index()==j.index())
63
+ {
64
+ res += numext::conj(i.value()) * j.value();
65
+ ++i; ++j;
66
+ }
67
+ else if (i.index()<j.index())
68
+ ++i;
69
+ else
70
+ ++j;
71
+ }
72
+ return res;
73
+ }
74
+
75
+ template<typename Derived>
76
+ inline typename NumTraits<typename internal::traits<Derived>::Scalar>::Real
77
+ SparseMatrixBase<Derived>::squaredNorm() const
78
+ {
79
+ return numext::real((*this).cwiseAbs2().sum());
80
+ }
81
+
82
+ template<typename Derived>
83
+ inline typename NumTraits<typename internal::traits<Derived>::Scalar>::Real
84
+ SparseMatrixBase<Derived>::norm() const
85
+ {
86
+ using std::sqrt;
87
+ return sqrt(squaredNorm());
88
+ }
89
+
90
+ template<typename Derived>
91
+ inline typename NumTraits<typename internal::traits<Derived>::Scalar>::Real
92
+ SparseMatrixBase<Derived>::blueNorm() const
93
+ {
94
+ return internal::blueNorm_impl(*this);
95
+ }
96
+ } // end namespace Eigen
97
+
98
+ #endif // EIGEN_SPARSE_DOT_H
@@ -0,0 +1,29 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008-2014 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_SPARSE_FUZZY_H
11
+ #define EIGEN_SPARSE_FUZZY_H
12
+
13
+ namespace Eigen {
14
+
15
+ template<typename Derived>
16
+ template<typename OtherDerived>
17
+ bool SparseMatrixBase<Derived>::isApprox(const SparseMatrixBase<OtherDerived>& other, const RealScalar &prec) const
18
+ {
19
+ const typename internal::nested_eval<Derived,2,PlainObject>::type actualA(derived());
20
+ typename internal::conditional<bool(IsRowMajor)==bool(OtherDerived::IsRowMajor),
21
+ const typename internal::nested_eval<OtherDerived,2,PlainObject>::type,
22
+ const PlainObject>::type actualB(other.derived());
23
+
24
+ return (actualA - actualB).squaredNorm() <= prec * prec * numext::mini(actualA.squaredNorm(), actualB.squaredNorm());
25
+ }
26
+
27
+ } // end namespace Eigen
28
+
29
+ #endif // EIGEN_SPARSE_FUZZY_H
@@ -0,0 +1,305 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2015 Gael Guennebaud <gael.guennebaud@inria.fr>
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+ //
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+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
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+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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+
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+ #ifndef EIGEN_SPARSE_MAP_H
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+ #define EIGEN_SPARSE_MAP_H
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+
13
+ namespace Eigen {
14
+
15
+ namespace internal {
16
+
17
+ template<typename MatScalar, int MatOptions, typename MatIndex, int Options, typename StrideType>
18
+ struct traits<Map<SparseMatrix<MatScalar,MatOptions,MatIndex>, Options, StrideType> >
19
+ : public traits<SparseMatrix<MatScalar,MatOptions,MatIndex> >
20
+ {
21
+ typedef SparseMatrix<MatScalar,MatOptions,MatIndex> PlainObjectType;
22
+ typedef traits<PlainObjectType> TraitsBase;
23
+ enum {
24
+ Flags = TraitsBase::Flags & (~NestByRefBit)
25
+ };
26
+ };
27
+
28
+ template<typename MatScalar, int MatOptions, typename MatIndex, int Options, typename StrideType>
29
+ struct traits<Map<const SparseMatrix<MatScalar,MatOptions,MatIndex>, Options, StrideType> >
30
+ : public traits<SparseMatrix<MatScalar,MatOptions,MatIndex> >
31
+ {
32
+ typedef SparseMatrix<MatScalar,MatOptions,MatIndex> PlainObjectType;
33
+ typedef traits<PlainObjectType> TraitsBase;
34
+ enum {
35
+ Flags = TraitsBase::Flags & (~ (NestByRefBit | LvalueBit))
36
+ };
37
+ };
38
+
39
+ } // end namespace internal
40
+
41
+ template<typename Derived,
42
+ int Level = internal::accessors_level<Derived>::has_write_access ? WriteAccessors : ReadOnlyAccessors
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+ > class SparseMapBase;
44
+
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+ /** \ingroup SparseCore_Module
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+ * class SparseMapBase
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+ * \brief Common base class for Map and Ref instance of sparse matrix and vector.
48
+ */
49
+ template<typename Derived>
50
+ class SparseMapBase<Derived,ReadOnlyAccessors>
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+ : public SparseCompressedBase<Derived>
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+ {
53
+ public:
54
+ typedef SparseCompressedBase<Derived> Base;
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+ typedef typename Base::Scalar Scalar;
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+ typedef typename Base::StorageIndex StorageIndex;
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+ enum { IsRowMajor = Base::IsRowMajor };
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+ using Base::operator=;
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+ protected:
60
+
61
+ typedef typename internal::conditional<
62
+ bool(internal::is_lvalue<Derived>::value),
63
+ Scalar *, const Scalar *>::type ScalarPointer;
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+ typedef typename internal::conditional<
65
+ bool(internal::is_lvalue<Derived>::value),
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+ StorageIndex *, const StorageIndex *>::type IndexPointer;
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+
68
+ Index m_outerSize;
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+ Index m_innerSize;
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+ Array<StorageIndex,2,1> m_zero_nnz;
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+ IndexPointer m_outerIndex;
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+ IndexPointer m_innerIndices;
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+ ScalarPointer m_values;
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+ IndexPointer m_innerNonZeros;
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+
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+ public:
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+
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+ /** \copydoc SparseMatrixBase::rows() */
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+ inline Index rows() const { return IsRowMajor ? m_outerSize : m_innerSize; }
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+ /** \copydoc SparseMatrixBase::cols() */
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+ inline Index cols() const { return IsRowMajor ? m_innerSize : m_outerSize; }
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+ /** \copydoc SparseMatrixBase::innerSize() */
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+ inline Index innerSize() const { return m_innerSize; }
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+ /** \copydoc SparseMatrixBase::outerSize() */
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+ inline Index outerSize() const { return m_outerSize; }
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+ /** \copydoc SparseCompressedBase::nonZeros */
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+ inline Index nonZeros() const { return m_zero_nnz[1]; }
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+
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+ /** \copydoc SparseCompressedBase::isCompressed */
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+ bool isCompressed() const { return m_innerNonZeros==0; }
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+
92
+ //----------------------------------------
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+ // direct access interface
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+ /** \copydoc SparseMatrix::valuePtr */
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+ inline const Scalar* valuePtr() const { return m_values; }
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+ /** \copydoc SparseMatrix::innerIndexPtr */
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+ inline const StorageIndex* innerIndexPtr() const { return m_innerIndices; }
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+ /** \copydoc SparseMatrix::outerIndexPtr */
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+ inline const StorageIndex* outerIndexPtr() const { return m_outerIndex; }
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+ /** \copydoc SparseMatrix::innerNonZeroPtr */
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+ inline const StorageIndex* innerNonZeroPtr() const { return m_innerNonZeros; }
102
+ //----------------------------------------
103
+
104
+ /** \copydoc SparseMatrix::coeff */
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+ inline Scalar coeff(Index row, Index col) const
106
+ {
107
+ const Index outer = IsRowMajor ? row : col;
108
+ const Index inner = IsRowMajor ? col : row;
109
+
110
+ Index start = m_outerIndex[outer];
111
+ Index end = isCompressed() ? m_outerIndex[outer+1] : start + m_innerNonZeros[outer];
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+ if (start==end)
113
+ return Scalar(0);
114
+ else if (end>0 && inner==m_innerIndices[end-1])
115
+ return m_values[end-1];
116
+ // ^^ optimization: let's first check if it is the last coefficient
117
+ // (very common in high level algorithms)
118
+
119
+ const StorageIndex* r = std::lower_bound(&m_innerIndices[start],&m_innerIndices[end-1],inner);
120
+ const Index id = r-&m_innerIndices[0];
121
+ return ((*r==inner) && (id<end)) ? m_values[id] : Scalar(0);
122
+ }
123
+
124
+ inline SparseMapBase(Index rows, Index cols, Index nnz, IndexPointer outerIndexPtr, IndexPointer innerIndexPtr,
125
+ ScalarPointer valuePtr, IndexPointer innerNonZerosPtr = 0)
126
+ : m_outerSize(IsRowMajor?rows:cols), m_innerSize(IsRowMajor?cols:rows), m_zero_nnz(0,internal::convert_index<StorageIndex>(nnz)), m_outerIndex(outerIndexPtr),
127
+ m_innerIndices(innerIndexPtr), m_values(valuePtr), m_innerNonZeros(innerNonZerosPtr)
128
+ {}
129
+
130
+ // for vectors
131
+ inline SparseMapBase(Index size, Index nnz, IndexPointer innerIndexPtr, ScalarPointer valuePtr)
132
+ : m_outerSize(1), m_innerSize(size), m_zero_nnz(0,internal::convert_index<StorageIndex>(nnz)), m_outerIndex(m_zero_nnz.data()),
133
+ m_innerIndices(innerIndexPtr), m_values(valuePtr), m_innerNonZeros(0)
134
+ {}
135
+
136
+ /** Empty destructor */
137
+ inline ~SparseMapBase() {}
138
+
139
+ protected:
140
+ inline SparseMapBase() {}
141
+ };
142
+
143
+ /** \ingroup SparseCore_Module
144
+ * class SparseMapBase
145
+ * \brief Common base class for writable Map and Ref instance of sparse matrix and vector.
146
+ */
147
+ template<typename Derived>
148
+ class SparseMapBase<Derived,WriteAccessors>
149
+ : public SparseMapBase<Derived,ReadOnlyAccessors>
150
+ {
151
+ typedef MapBase<Derived, ReadOnlyAccessors> ReadOnlyMapBase;
152
+
153
+ public:
154
+ typedef SparseMapBase<Derived, ReadOnlyAccessors> Base;
155
+ typedef typename Base::Scalar Scalar;
156
+ typedef typename Base::StorageIndex StorageIndex;
157
+ enum { IsRowMajor = Base::IsRowMajor };
158
+
159
+ using Base::operator=;
160
+
161
+ public:
162
+
163
+ //----------------------------------------
164
+ // direct access interface
165
+ using Base::valuePtr;
166
+ using Base::innerIndexPtr;
167
+ using Base::outerIndexPtr;
168
+ using Base::innerNonZeroPtr;
169
+ /** \copydoc SparseMatrix::valuePtr */
170
+ inline Scalar* valuePtr() { return Base::m_values; }
171
+ /** \copydoc SparseMatrix::innerIndexPtr */
172
+ inline StorageIndex* innerIndexPtr() { return Base::m_innerIndices; }
173
+ /** \copydoc SparseMatrix::outerIndexPtr */
174
+ inline StorageIndex* outerIndexPtr() { return Base::m_outerIndex; }
175
+ /** \copydoc SparseMatrix::innerNonZeroPtr */
176
+ inline StorageIndex* innerNonZeroPtr() { return Base::m_innerNonZeros; }
177
+ //----------------------------------------
178
+
179
+ /** \copydoc SparseMatrix::coeffRef */
180
+ inline Scalar& coeffRef(Index row, Index col)
181
+ {
182
+ const Index outer = IsRowMajor ? row : col;
183
+ const Index inner = IsRowMajor ? col : row;
184
+
185
+ Index start = Base::m_outerIndex[outer];
186
+ Index end = Base::isCompressed() ? Base::m_outerIndex[outer+1] : start + Base::m_innerNonZeros[outer];
187
+ eigen_assert(end>=start && "you probably called coeffRef on a non finalized matrix");
188
+ eigen_assert(end>start && "coeffRef cannot be called on a zero coefficient");
189
+ StorageIndex* r = std::lower_bound(&Base::m_innerIndices[start],&Base::m_innerIndices[end],inner);
190
+ const Index id = r - &Base::m_innerIndices[0];
191
+ eigen_assert((*r==inner) && (id<end) && "coeffRef cannot be called on a zero coefficient");
192
+ return const_cast<Scalar*>(Base::m_values)[id];
193
+ }
194
+
195
+ inline SparseMapBase(Index rows, Index cols, Index nnz, StorageIndex* outerIndexPtr, StorageIndex* innerIndexPtr,
196
+ Scalar* valuePtr, StorageIndex* innerNonZerosPtr = 0)
197
+ : Base(rows, cols, nnz, outerIndexPtr, innerIndexPtr, valuePtr, innerNonZerosPtr)
198
+ {}
199
+
200
+ // for vectors
201
+ inline SparseMapBase(Index size, Index nnz, StorageIndex* innerIndexPtr, Scalar* valuePtr)
202
+ : Base(size, nnz, innerIndexPtr, valuePtr)
203
+ {}
204
+
205
+ /** Empty destructor */
206
+ inline ~SparseMapBase() {}
207
+
208
+ protected:
209
+ inline SparseMapBase() {}
210
+ };
211
+
212
+ /** \ingroup SparseCore_Module
213
+ *
214
+ * \brief Specialization of class Map for SparseMatrix-like storage.
215
+ *
216
+ * \tparam SparseMatrixType the equivalent sparse matrix type of the referenced data, it must be a template instance of class SparseMatrix.
217
+ *
218
+ * \sa class Map, class SparseMatrix, class Ref<SparseMatrixType,Options>
219
+ */
220
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
221
+ template<typename MatScalar, int MatOptions, typename MatIndex, int Options, typename StrideType>
222
+ class Map<SparseMatrix<MatScalar,MatOptions,MatIndex>, Options, StrideType>
223
+ : public SparseMapBase<Map<SparseMatrix<MatScalar,MatOptions,MatIndex>, Options, StrideType> >
224
+ #else
225
+ template<typename SparseMatrixType>
226
+ class Map<SparseMatrixType>
227
+ : public SparseMapBase<Derived,WriteAccessors>
228
+ #endif
229
+ {
230
+ public:
231
+ typedef SparseMapBase<Map> Base;
232
+ EIGEN_SPARSE_PUBLIC_INTERFACE(Map)
233
+ enum { IsRowMajor = Base::IsRowMajor };
234
+
235
+ public:
236
+
237
+ /** Constructs a read-write Map to a sparse matrix of size \a rows x \a cols, containing \a nnz non-zero coefficients,
238
+ * stored as a sparse format as defined by the pointers \a outerIndexPtr, \a innerIndexPtr, and \a valuePtr.
239
+ * If the optional parameter \a innerNonZerosPtr is the null pointer, then a standard compressed format is assumed.
240
+ *
241
+ * This constructor is available only if \c SparseMatrixType is non-const.
242
+ *
243
+ * More details on the expected storage schemes are given in the \ref TutorialSparse "manual pages".
244
+ */
245
+ inline Map(Index rows, Index cols, Index nnz, StorageIndex* outerIndexPtr,
246
+ StorageIndex* innerIndexPtr, Scalar* valuePtr, StorageIndex* innerNonZerosPtr = 0)
247
+ : Base(rows, cols, nnz, outerIndexPtr, innerIndexPtr, valuePtr, innerNonZerosPtr)
248
+ {}
249
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
250
+ /** Empty destructor */
251
+ inline ~Map() {}
252
+ };
253
+
254
+ template<typename MatScalar, int MatOptions, typename MatIndex, int Options, typename StrideType>
255
+ class Map<const SparseMatrix<MatScalar,MatOptions,MatIndex>, Options, StrideType>
256
+ : public SparseMapBase<Map<const SparseMatrix<MatScalar,MatOptions,MatIndex>, Options, StrideType> >
257
+ {
258
+ public:
259
+ typedef SparseMapBase<Map> Base;
260
+ EIGEN_SPARSE_PUBLIC_INTERFACE(Map)
261
+ enum { IsRowMajor = Base::IsRowMajor };
262
+
263
+ public:
264
+ #endif
265
+ /** This is the const version of the above constructor.
266
+ *
267
+ * This constructor is available only if \c SparseMatrixType is const, e.g.:
268
+ * \code Map<const SparseMatrix<double> > \endcode
269
+ */
270
+ inline Map(Index rows, Index cols, Index nnz, const StorageIndex* outerIndexPtr,
271
+ const StorageIndex* innerIndexPtr, const Scalar* valuePtr, const StorageIndex* innerNonZerosPtr = 0)
272
+ : Base(rows, cols, nnz, outerIndexPtr, innerIndexPtr, valuePtr, innerNonZerosPtr)
273
+ {}
274
+
275
+ /** Empty destructor */
276
+ inline ~Map() {}
277
+ };
278
+
279
+ namespace internal {
280
+
281
+ template<typename MatScalar, int MatOptions, typename MatIndex, int Options, typename StrideType>
282
+ struct evaluator<Map<SparseMatrix<MatScalar,MatOptions,MatIndex>, Options, StrideType> >
283
+ : evaluator<SparseCompressedBase<Map<SparseMatrix<MatScalar,MatOptions,MatIndex>, Options, StrideType> > >
284
+ {
285
+ typedef evaluator<SparseCompressedBase<Map<SparseMatrix<MatScalar,MatOptions,MatIndex>, Options, StrideType> > > Base;
286
+ typedef Map<SparseMatrix<MatScalar,MatOptions,MatIndex>, Options, StrideType> XprType;
287
+ evaluator() : Base() {}
288
+ explicit evaluator(const XprType &mat) : Base(mat) {}
289
+ };
290
+
291
+ template<typename MatScalar, int MatOptions, typename MatIndex, int Options, typename StrideType>
292
+ struct evaluator<Map<const SparseMatrix<MatScalar,MatOptions,MatIndex>, Options, StrideType> >
293
+ : evaluator<SparseCompressedBase<Map<const SparseMatrix<MatScalar,MatOptions,MatIndex>, Options, StrideType> > >
294
+ {
295
+ typedef evaluator<SparseCompressedBase<Map<const SparseMatrix<MatScalar,MatOptions,MatIndex>, Options, StrideType> > > Base;
296
+ typedef Map<const SparseMatrix<MatScalar,MatOptions,MatIndex>, Options, StrideType> XprType;
297
+ evaluator() : Base() {}
298
+ explicit evaluator(const XprType &mat) : Base(mat) {}
299
+ };
300
+
301
+ }
302
+
303
+ } // end namespace Eigen
304
+
305
+ #endif // EIGEN_SPARSE_MAP_H