tomoto 0.1.0
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +7 -0
- data/CHANGELOG.md +3 -0
- data/LICENSE.txt +22 -0
- data/README.md +123 -0
- data/ext/tomoto/ext.cpp +245 -0
- data/ext/tomoto/extconf.rb +28 -0
- data/lib/tomoto.rb +12 -0
- data/lib/tomoto/ct.rb +11 -0
- data/lib/tomoto/hdp.rb +11 -0
- data/lib/tomoto/lda.rb +67 -0
- data/lib/tomoto/version.rb +3 -0
- data/vendor/EigenRand/EigenRand/Core.h +1139 -0
- data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
- data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
- data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
- data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
- data/vendor/EigenRand/EigenRand/EigenRand +19 -0
- data/vendor/EigenRand/EigenRand/Macro.h +24 -0
- data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
- data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
- data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
- data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
- data/vendor/EigenRand/EigenRand/doc.h +220 -0
- data/vendor/EigenRand/LICENSE +21 -0
- data/vendor/EigenRand/README.md +288 -0
- data/vendor/eigen/COPYING.BSD +26 -0
- data/vendor/eigen/COPYING.GPL +674 -0
- data/vendor/eigen/COPYING.LGPL +502 -0
- data/vendor/eigen/COPYING.MINPACK +52 -0
- data/vendor/eigen/COPYING.MPL2 +373 -0
- data/vendor/eigen/COPYING.README +18 -0
- data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
- data/vendor/eigen/Eigen/Cholesky +46 -0
- data/vendor/eigen/Eigen/CholmodSupport +48 -0
- data/vendor/eigen/Eigen/Core +537 -0
- data/vendor/eigen/Eigen/Dense +7 -0
- data/vendor/eigen/Eigen/Eigen +2 -0
- data/vendor/eigen/Eigen/Eigenvalues +61 -0
- data/vendor/eigen/Eigen/Geometry +62 -0
- data/vendor/eigen/Eigen/Householder +30 -0
- data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
- data/vendor/eigen/Eigen/Jacobi +33 -0
- data/vendor/eigen/Eigen/LU +50 -0
- data/vendor/eigen/Eigen/MetisSupport +35 -0
- data/vendor/eigen/Eigen/OrderingMethods +73 -0
- data/vendor/eigen/Eigen/PaStiXSupport +48 -0
- data/vendor/eigen/Eigen/PardisoSupport +35 -0
- data/vendor/eigen/Eigen/QR +51 -0
- data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
- data/vendor/eigen/Eigen/SPQRSupport +34 -0
- data/vendor/eigen/Eigen/SVD +51 -0
- data/vendor/eigen/Eigen/Sparse +36 -0
- data/vendor/eigen/Eigen/SparseCholesky +45 -0
- data/vendor/eigen/Eigen/SparseCore +69 -0
- data/vendor/eigen/Eigen/SparseLU +46 -0
- data/vendor/eigen/Eigen/SparseQR +37 -0
- data/vendor/eigen/Eigen/StdDeque +27 -0
- data/vendor/eigen/Eigen/StdList +26 -0
- data/vendor/eigen/Eigen/StdVector +27 -0
- data/vendor/eigen/Eigen/SuperLUSupport +64 -0
- data/vendor/eigen/Eigen/UmfPackSupport +40 -0
- data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
- data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
- data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
- data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
- data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
- data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
- data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
- data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
- data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
- data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
- data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
- data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
- data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
- data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
- data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
- data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
- data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
- data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
- data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
- data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
- data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
- data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
- data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
- data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
- data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
- data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
- data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
- data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
- data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
- data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
- data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
- data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
- data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
- data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
- data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
- data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
- data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
- data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
- data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
- data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
- data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
- data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
- data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
- data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
- data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
- data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
- data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
- data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
- data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
- data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
- data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
- data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
- data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
- data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
- data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
- data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
- data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
- data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
- data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
- data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
- data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
- data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
- data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
- data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
- data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
- data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
- data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
- data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
- data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
- data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
- data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
- data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
- data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
- data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
- data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
- data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
- data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
- data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
- data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
- data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
- data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
- data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
- data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
- data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
- data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
- data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
- data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
- data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
- data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
- data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
- data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
- data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
- data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
- data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
- data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
- data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
- data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
- data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
- data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
- data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
- data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
- data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
- data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
- data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
- data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
- data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
- data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
- data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
- data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
- data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
- data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
- data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
- data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
- data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
- data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
- data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
- data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
- data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
- data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
- data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
- data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
- data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
- data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
- data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
- data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
- data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
- data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
- data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
- data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
- data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
- data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
- data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
- data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
- data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
- data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
- data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
- data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
- data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +126 -0
- data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
- data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
- data/vendor/eigen/Eigen/src/StlSupport/details.h +84 -0
- data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
- data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
- data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
- data/vendor/eigen/Eigen/src/misc/Kernel.h +79 -0
- data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
- data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
- data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
- data/vendor/eigen/Eigen/src/misc/lapacke.h +16291 -0
- data/vendor/eigen/Eigen/src/misc/lapacke_mangling.h +17 -0
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +332 -0
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
- data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
- data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
- data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +163 -0
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
- data/vendor/eigen/README.md +3 -0
- data/vendor/eigen/bench/README.txt +55 -0
- data/vendor/eigen/bench/btl/COPYING +340 -0
- data/vendor/eigen/bench/btl/README +154 -0
- data/vendor/eigen/bench/tensors/README +21 -0
- data/vendor/eigen/blas/README.txt +6 -0
- data/vendor/eigen/demos/mandelbrot/README +10 -0
- data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
- data/vendor/eigen/demos/opengl/README +13 -0
- data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
- data/vendor/eigen/unsupported/README.txt +50 -0
- data/vendor/tomotopy/LICENSE +21 -0
- data/vendor/tomotopy/README.kr.rst +375 -0
- data/vendor/tomotopy/README.rst +382 -0
- data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
- data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
- data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
- data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
- data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
- data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
- data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
- data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
- data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
- data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
- data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
- data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
- data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
- data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
- data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
- data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
- data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
- data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
- data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
- data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
- data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
- data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
- data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
- data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
- data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
- data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
- data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
- data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
- data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
- data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
- data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
- data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
- data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
- data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
- data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
- data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
- data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
- data/vendor/tomotopy/src/Utils/AliasMethod.hpp +169 -0
- data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
- data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
- data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
- data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
- data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
- data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
- data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
- data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
- data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
- data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
- data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
- data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
- data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
- data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
- data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
- data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
- data/vendor/tomotopy/src/Utils/exception.h +28 -0
- data/vendor/tomotopy/src/Utils/math.h +281 -0
- data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
- data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
- data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
- data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
- data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
- data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
- data/vendor/tomotopy/src/Utils/text.hpp +49 -0
- data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
- metadata +531 -0
@@ -0,0 +1,542 @@
|
|
1
|
+
// This file is part of Eigen, a lightweight C++ template library
|
2
|
+
// for linear algebra.
|
3
|
+
//
|
4
|
+
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
|
5
|
+
//
|
6
|
+
// This Source Code Form is subject to the terms of the Mozilla
|
7
|
+
// Public License v. 2.0. If a copy of the MPL was not distributed
|
8
|
+
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
|
9
|
+
|
10
|
+
#ifndef EIGEN_LLT_H
|
11
|
+
#define EIGEN_LLT_H
|
12
|
+
|
13
|
+
namespace Eigen {
|
14
|
+
|
15
|
+
namespace internal{
|
16
|
+
template<typename MatrixType, int UpLo> struct LLT_Traits;
|
17
|
+
}
|
18
|
+
|
19
|
+
/** \ingroup Cholesky_Module
|
20
|
+
*
|
21
|
+
* \class LLT
|
22
|
+
*
|
23
|
+
* \brief Standard Cholesky decomposition (LL^T) of a matrix and associated features
|
24
|
+
*
|
25
|
+
* \tparam _MatrixType the type of the matrix of which we are computing the LL^T Cholesky decomposition
|
26
|
+
* \tparam _UpLo the triangular part that will be used for the decompositon: Lower (default) or Upper.
|
27
|
+
* The other triangular part won't be read.
|
28
|
+
*
|
29
|
+
* This class performs a LL^T Cholesky decomposition of a symmetric, positive definite
|
30
|
+
* matrix A such that A = LL^* = U^*U, where L is lower triangular.
|
31
|
+
*
|
32
|
+
* While the Cholesky decomposition is particularly useful to solve selfadjoint problems like D^*D x = b,
|
33
|
+
* for that purpose, we recommend the Cholesky decomposition without square root which is more stable
|
34
|
+
* and even faster. Nevertheless, this standard Cholesky decomposition remains useful in many other
|
35
|
+
* situations like generalised eigen problems with hermitian matrices.
|
36
|
+
*
|
37
|
+
* Remember that Cholesky decompositions are not rank-revealing. This LLT decomposition is only stable on positive definite matrices,
|
38
|
+
* use LDLT instead for the semidefinite case. Also, do not use a Cholesky decomposition to determine whether a system of equations
|
39
|
+
* has a solution.
|
40
|
+
*
|
41
|
+
* Example: \include LLT_example.cpp
|
42
|
+
* Output: \verbinclude LLT_example.out
|
43
|
+
*
|
44
|
+
* \b Performance: for best performance, it is recommended to use a column-major storage format
|
45
|
+
* with the Lower triangular part (the default), or, equivalently, a row-major storage format
|
46
|
+
* with the Upper triangular part. Otherwise, you might get a 20% slowdown for the full factorization
|
47
|
+
* step, and rank-updates can be up to 3 times slower.
|
48
|
+
*
|
49
|
+
* This class supports the \link InplaceDecomposition inplace decomposition \endlink mechanism.
|
50
|
+
*
|
51
|
+
* Note that during the decomposition, only the lower (or upper, as defined by _UpLo) triangular part of A is considered.
|
52
|
+
* Therefore, the strict lower part does not have to store correct values.
|
53
|
+
*
|
54
|
+
* \sa MatrixBase::llt(), SelfAdjointView::llt(), class LDLT
|
55
|
+
*/
|
56
|
+
template<typename _MatrixType, int _UpLo> class LLT
|
57
|
+
{
|
58
|
+
public:
|
59
|
+
typedef _MatrixType MatrixType;
|
60
|
+
enum {
|
61
|
+
RowsAtCompileTime = MatrixType::RowsAtCompileTime,
|
62
|
+
ColsAtCompileTime = MatrixType::ColsAtCompileTime,
|
63
|
+
MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime
|
64
|
+
};
|
65
|
+
typedef typename MatrixType::Scalar Scalar;
|
66
|
+
typedef typename NumTraits<typename MatrixType::Scalar>::Real RealScalar;
|
67
|
+
typedef Eigen::Index Index; ///< \deprecated since Eigen 3.3
|
68
|
+
typedef typename MatrixType::StorageIndex StorageIndex;
|
69
|
+
|
70
|
+
enum {
|
71
|
+
PacketSize = internal::packet_traits<Scalar>::size,
|
72
|
+
AlignmentMask = int(PacketSize)-1,
|
73
|
+
UpLo = _UpLo
|
74
|
+
};
|
75
|
+
|
76
|
+
typedef internal::LLT_Traits<MatrixType,UpLo> Traits;
|
77
|
+
|
78
|
+
/**
|
79
|
+
* \brief Default Constructor.
|
80
|
+
*
|
81
|
+
* The default constructor is useful in cases in which the user intends to
|
82
|
+
* perform decompositions via LLT::compute(const MatrixType&).
|
83
|
+
*/
|
84
|
+
LLT() : m_matrix(), m_isInitialized(false) {}
|
85
|
+
|
86
|
+
/** \brief Default Constructor with memory preallocation
|
87
|
+
*
|
88
|
+
* Like the default constructor but with preallocation of the internal data
|
89
|
+
* according to the specified problem \a size.
|
90
|
+
* \sa LLT()
|
91
|
+
*/
|
92
|
+
explicit LLT(Index size) : m_matrix(size, size),
|
93
|
+
m_isInitialized(false) {}
|
94
|
+
|
95
|
+
template<typename InputType>
|
96
|
+
explicit LLT(const EigenBase<InputType>& matrix)
|
97
|
+
: m_matrix(matrix.rows(), matrix.cols()),
|
98
|
+
m_isInitialized(false)
|
99
|
+
{
|
100
|
+
compute(matrix.derived());
|
101
|
+
}
|
102
|
+
|
103
|
+
/** \brief Constructs a LDLT factorization from a given matrix
|
104
|
+
*
|
105
|
+
* This overloaded constructor is provided for \link InplaceDecomposition inplace decomposition \endlink when
|
106
|
+
* \c MatrixType is a Eigen::Ref.
|
107
|
+
*
|
108
|
+
* \sa LLT(const EigenBase&)
|
109
|
+
*/
|
110
|
+
template<typename InputType>
|
111
|
+
explicit LLT(EigenBase<InputType>& matrix)
|
112
|
+
: m_matrix(matrix.derived()),
|
113
|
+
m_isInitialized(false)
|
114
|
+
{
|
115
|
+
compute(matrix.derived());
|
116
|
+
}
|
117
|
+
|
118
|
+
/** \returns a view of the upper triangular matrix U */
|
119
|
+
inline typename Traits::MatrixU matrixU() const
|
120
|
+
{
|
121
|
+
eigen_assert(m_isInitialized && "LLT is not initialized.");
|
122
|
+
return Traits::getU(m_matrix);
|
123
|
+
}
|
124
|
+
|
125
|
+
/** \returns a view of the lower triangular matrix L */
|
126
|
+
inline typename Traits::MatrixL matrixL() const
|
127
|
+
{
|
128
|
+
eigen_assert(m_isInitialized && "LLT is not initialized.");
|
129
|
+
return Traits::getL(m_matrix);
|
130
|
+
}
|
131
|
+
|
132
|
+
/** \returns the solution x of \f$ A x = b \f$ using the current decomposition of A.
|
133
|
+
*
|
134
|
+
* Since this LLT class assumes anyway that the matrix A is invertible, the solution
|
135
|
+
* theoretically exists and is unique regardless of b.
|
136
|
+
*
|
137
|
+
* Example: \include LLT_solve.cpp
|
138
|
+
* Output: \verbinclude LLT_solve.out
|
139
|
+
*
|
140
|
+
* \sa solveInPlace(), MatrixBase::llt(), SelfAdjointView::llt()
|
141
|
+
*/
|
142
|
+
template<typename Rhs>
|
143
|
+
inline const Solve<LLT, Rhs>
|
144
|
+
solve(const MatrixBase<Rhs>& b) const
|
145
|
+
{
|
146
|
+
eigen_assert(m_isInitialized && "LLT is not initialized.");
|
147
|
+
eigen_assert(m_matrix.rows()==b.rows()
|
148
|
+
&& "LLT::solve(): invalid number of rows of the right hand side matrix b");
|
149
|
+
return Solve<LLT, Rhs>(*this, b.derived());
|
150
|
+
}
|
151
|
+
|
152
|
+
template<typename Derived>
|
153
|
+
void solveInPlace(const MatrixBase<Derived> &bAndX) const;
|
154
|
+
|
155
|
+
template<typename InputType>
|
156
|
+
LLT& compute(const EigenBase<InputType>& matrix);
|
157
|
+
|
158
|
+
/** \returns an estimate of the reciprocal condition number of the matrix of
|
159
|
+
* which \c *this is the Cholesky decomposition.
|
160
|
+
*/
|
161
|
+
RealScalar rcond() const
|
162
|
+
{
|
163
|
+
eigen_assert(m_isInitialized && "LLT is not initialized.");
|
164
|
+
eigen_assert(m_info == Success && "LLT failed because matrix appears to be negative");
|
165
|
+
return internal::rcond_estimate_helper(m_l1_norm, *this);
|
166
|
+
}
|
167
|
+
|
168
|
+
/** \returns the LLT decomposition matrix
|
169
|
+
*
|
170
|
+
* TODO: document the storage layout
|
171
|
+
*/
|
172
|
+
inline const MatrixType& matrixLLT() const
|
173
|
+
{
|
174
|
+
eigen_assert(m_isInitialized && "LLT is not initialized.");
|
175
|
+
return m_matrix;
|
176
|
+
}
|
177
|
+
|
178
|
+
MatrixType reconstructedMatrix() const;
|
179
|
+
|
180
|
+
|
181
|
+
/** \brief Reports whether previous computation was successful.
|
182
|
+
*
|
183
|
+
* \returns \c Success if computation was succesful,
|
184
|
+
* \c NumericalIssue if the matrix.appears not to be positive definite.
|
185
|
+
*/
|
186
|
+
ComputationInfo info() const
|
187
|
+
{
|
188
|
+
eigen_assert(m_isInitialized && "LLT is not initialized.");
|
189
|
+
return m_info;
|
190
|
+
}
|
191
|
+
|
192
|
+
/** \returns the adjoint of \c *this, that is, a const reference to the decomposition itself as the underlying matrix is self-adjoint.
|
193
|
+
*
|
194
|
+
* This method is provided for compatibility with other matrix decompositions, thus enabling generic code such as:
|
195
|
+
* \code x = decomposition.adjoint().solve(b) \endcode
|
196
|
+
*/
|
197
|
+
const LLT& adjoint() const { return *this; };
|
198
|
+
|
199
|
+
inline Index rows() const { return m_matrix.rows(); }
|
200
|
+
inline Index cols() const { return m_matrix.cols(); }
|
201
|
+
|
202
|
+
template<typename VectorType>
|
203
|
+
LLT rankUpdate(const VectorType& vec, const RealScalar& sigma = 1);
|
204
|
+
|
205
|
+
#ifndef EIGEN_PARSED_BY_DOXYGEN
|
206
|
+
template<typename RhsType, typename DstType>
|
207
|
+
EIGEN_DEVICE_FUNC
|
208
|
+
void _solve_impl(const RhsType &rhs, DstType &dst) const;
|
209
|
+
#endif
|
210
|
+
|
211
|
+
protected:
|
212
|
+
|
213
|
+
static void check_template_parameters()
|
214
|
+
{
|
215
|
+
EIGEN_STATIC_ASSERT_NON_INTEGER(Scalar);
|
216
|
+
}
|
217
|
+
|
218
|
+
/** \internal
|
219
|
+
* Used to compute and store L
|
220
|
+
* The strict upper part is not used and even not initialized.
|
221
|
+
*/
|
222
|
+
MatrixType m_matrix;
|
223
|
+
RealScalar m_l1_norm;
|
224
|
+
bool m_isInitialized;
|
225
|
+
ComputationInfo m_info;
|
226
|
+
};
|
227
|
+
|
228
|
+
namespace internal {
|
229
|
+
|
230
|
+
template<typename Scalar, int UpLo> struct llt_inplace;
|
231
|
+
|
232
|
+
template<typename MatrixType, typename VectorType>
|
233
|
+
static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
|
234
|
+
{
|
235
|
+
using std::sqrt;
|
236
|
+
typedef typename MatrixType::Scalar Scalar;
|
237
|
+
typedef typename MatrixType::RealScalar RealScalar;
|
238
|
+
typedef typename MatrixType::ColXpr ColXpr;
|
239
|
+
typedef typename internal::remove_all<ColXpr>::type ColXprCleaned;
|
240
|
+
typedef typename ColXprCleaned::SegmentReturnType ColXprSegment;
|
241
|
+
typedef Matrix<Scalar,Dynamic,1> TempVectorType;
|
242
|
+
typedef typename TempVectorType::SegmentReturnType TempVecSegment;
|
243
|
+
|
244
|
+
Index n = mat.cols();
|
245
|
+
eigen_assert(mat.rows()==n && vec.size()==n);
|
246
|
+
|
247
|
+
TempVectorType temp;
|
248
|
+
|
249
|
+
if(sigma>0)
|
250
|
+
{
|
251
|
+
// This version is based on Givens rotations.
|
252
|
+
// It is faster than the other one below, but only works for updates,
|
253
|
+
// i.e., for sigma > 0
|
254
|
+
temp = sqrt(sigma) * vec;
|
255
|
+
|
256
|
+
for(Index i=0; i<n; ++i)
|
257
|
+
{
|
258
|
+
JacobiRotation<Scalar> g;
|
259
|
+
g.makeGivens(mat(i,i), -temp(i), &mat(i,i));
|
260
|
+
|
261
|
+
Index rs = n-i-1;
|
262
|
+
if(rs>0)
|
263
|
+
{
|
264
|
+
ColXprSegment x(mat.col(i).tail(rs));
|
265
|
+
TempVecSegment y(temp.tail(rs));
|
266
|
+
apply_rotation_in_the_plane(x, y, g);
|
267
|
+
}
|
268
|
+
}
|
269
|
+
}
|
270
|
+
else
|
271
|
+
{
|
272
|
+
temp = vec;
|
273
|
+
RealScalar beta = 1;
|
274
|
+
for(Index j=0; j<n; ++j)
|
275
|
+
{
|
276
|
+
RealScalar Ljj = numext::real(mat.coeff(j,j));
|
277
|
+
RealScalar dj = numext::abs2(Ljj);
|
278
|
+
Scalar wj = temp.coeff(j);
|
279
|
+
RealScalar swj2 = sigma*numext::abs2(wj);
|
280
|
+
RealScalar gamma = dj*beta + swj2;
|
281
|
+
|
282
|
+
RealScalar x = dj + swj2/beta;
|
283
|
+
if (x<=RealScalar(0))
|
284
|
+
return j;
|
285
|
+
RealScalar nLjj = sqrt(x);
|
286
|
+
mat.coeffRef(j,j) = nLjj;
|
287
|
+
beta += swj2/dj;
|
288
|
+
|
289
|
+
// Update the terms of L
|
290
|
+
Index rs = n-j-1;
|
291
|
+
if(rs)
|
292
|
+
{
|
293
|
+
temp.tail(rs) -= (wj/Ljj) * mat.col(j).tail(rs);
|
294
|
+
if(gamma != 0)
|
295
|
+
mat.col(j).tail(rs) = (nLjj/Ljj) * mat.col(j).tail(rs) + (nLjj * sigma*numext::conj(wj)/gamma)*temp.tail(rs);
|
296
|
+
}
|
297
|
+
}
|
298
|
+
}
|
299
|
+
return -1;
|
300
|
+
}
|
301
|
+
|
302
|
+
template<typename Scalar> struct llt_inplace<Scalar, Lower>
|
303
|
+
{
|
304
|
+
typedef typename NumTraits<Scalar>::Real RealScalar;
|
305
|
+
template<typename MatrixType>
|
306
|
+
static Index unblocked(MatrixType& mat)
|
307
|
+
{
|
308
|
+
using std::sqrt;
|
309
|
+
|
310
|
+
eigen_assert(mat.rows()==mat.cols());
|
311
|
+
const Index size = mat.rows();
|
312
|
+
for(Index k = 0; k < size; ++k)
|
313
|
+
{
|
314
|
+
Index rs = size-k-1; // remaining size
|
315
|
+
|
316
|
+
Block<MatrixType,Dynamic,1> A21(mat,k+1,k,rs,1);
|
317
|
+
Block<MatrixType,1,Dynamic> A10(mat,k,0,1,k);
|
318
|
+
Block<MatrixType,Dynamic,Dynamic> A20(mat,k+1,0,rs,k);
|
319
|
+
|
320
|
+
RealScalar x = numext::real(mat.coeff(k,k));
|
321
|
+
if (k>0) x -= A10.squaredNorm();
|
322
|
+
if (x<=RealScalar(0))
|
323
|
+
return k;
|
324
|
+
mat.coeffRef(k,k) = x = sqrt(x);
|
325
|
+
if (k>0 && rs>0) A21.noalias() -= A20 * A10.adjoint();
|
326
|
+
if (rs>0) A21 /= x;
|
327
|
+
}
|
328
|
+
return -1;
|
329
|
+
}
|
330
|
+
|
331
|
+
template<typename MatrixType>
|
332
|
+
static Index blocked(MatrixType& m)
|
333
|
+
{
|
334
|
+
eigen_assert(m.rows()==m.cols());
|
335
|
+
Index size = m.rows();
|
336
|
+
if(size<32)
|
337
|
+
return unblocked(m);
|
338
|
+
|
339
|
+
Index blockSize = size/8;
|
340
|
+
blockSize = (blockSize/16)*16;
|
341
|
+
blockSize = (std::min)((std::max)(blockSize,Index(8)), Index(128));
|
342
|
+
|
343
|
+
for (Index k=0; k<size; k+=blockSize)
|
344
|
+
{
|
345
|
+
// partition the matrix:
|
346
|
+
// A00 | - | -
|
347
|
+
// lu = A10 | A11 | -
|
348
|
+
// A20 | A21 | A22
|
349
|
+
Index bs = (std::min)(blockSize, size-k);
|
350
|
+
Index rs = size - k - bs;
|
351
|
+
Block<MatrixType,Dynamic,Dynamic> A11(m,k, k, bs,bs);
|
352
|
+
Block<MatrixType,Dynamic,Dynamic> A21(m,k+bs,k, rs,bs);
|
353
|
+
Block<MatrixType,Dynamic,Dynamic> A22(m,k+bs,k+bs,rs,rs);
|
354
|
+
|
355
|
+
Index ret;
|
356
|
+
if((ret=unblocked(A11))>=0) return k+ret;
|
357
|
+
if(rs>0) A11.adjoint().template triangularView<Upper>().template solveInPlace<OnTheRight>(A21);
|
358
|
+
if(rs>0) A22.template selfadjointView<Lower>().rankUpdate(A21,typename NumTraits<RealScalar>::Literal(-1)); // bottleneck
|
359
|
+
}
|
360
|
+
return -1;
|
361
|
+
}
|
362
|
+
|
363
|
+
template<typename MatrixType, typename VectorType>
|
364
|
+
static Index rankUpdate(MatrixType& mat, const VectorType& vec, const RealScalar& sigma)
|
365
|
+
{
|
366
|
+
return Eigen::internal::llt_rank_update_lower(mat, vec, sigma);
|
367
|
+
}
|
368
|
+
};
|
369
|
+
|
370
|
+
template<typename Scalar> struct llt_inplace<Scalar, Upper>
|
371
|
+
{
|
372
|
+
typedef typename NumTraits<Scalar>::Real RealScalar;
|
373
|
+
|
374
|
+
template<typename MatrixType>
|
375
|
+
static EIGEN_STRONG_INLINE Index unblocked(MatrixType& mat)
|
376
|
+
{
|
377
|
+
Transpose<MatrixType> matt(mat);
|
378
|
+
return llt_inplace<Scalar, Lower>::unblocked(matt);
|
379
|
+
}
|
380
|
+
template<typename MatrixType>
|
381
|
+
static EIGEN_STRONG_INLINE Index blocked(MatrixType& mat)
|
382
|
+
{
|
383
|
+
Transpose<MatrixType> matt(mat);
|
384
|
+
return llt_inplace<Scalar, Lower>::blocked(matt);
|
385
|
+
}
|
386
|
+
template<typename MatrixType, typename VectorType>
|
387
|
+
static Index rankUpdate(MatrixType& mat, const VectorType& vec, const RealScalar& sigma)
|
388
|
+
{
|
389
|
+
Transpose<MatrixType> matt(mat);
|
390
|
+
return llt_inplace<Scalar, Lower>::rankUpdate(matt, vec.conjugate(), sigma);
|
391
|
+
}
|
392
|
+
};
|
393
|
+
|
394
|
+
template<typename MatrixType> struct LLT_Traits<MatrixType,Lower>
|
395
|
+
{
|
396
|
+
typedef const TriangularView<const MatrixType, Lower> MatrixL;
|
397
|
+
typedef const TriangularView<const typename MatrixType::AdjointReturnType, Upper> MatrixU;
|
398
|
+
static inline MatrixL getL(const MatrixType& m) { return MatrixL(m); }
|
399
|
+
static inline MatrixU getU(const MatrixType& m) { return MatrixU(m.adjoint()); }
|
400
|
+
static bool inplace_decomposition(MatrixType& m)
|
401
|
+
{ return llt_inplace<typename MatrixType::Scalar, Lower>::blocked(m)==-1; }
|
402
|
+
};
|
403
|
+
|
404
|
+
template<typename MatrixType> struct LLT_Traits<MatrixType,Upper>
|
405
|
+
{
|
406
|
+
typedef const TriangularView<const typename MatrixType::AdjointReturnType, Lower> MatrixL;
|
407
|
+
typedef const TriangularView<const MatrixType, Upper> MatrixU;
|
408
|
+
static inline MatrixL getL(const MatrixType& m) { return MatrixL(m.adjoint()); }
|
409
|
+
static inline MatrixU getU(const MatrixType& m) { return MatrixU(m); }
|
410
|
+
static bool inplace_decomposition(MatrixType& m)
|
411
|
+
{ return llt_inplace<typename MatrixType::Scalar, Upper>::blocked(m)==-1; }
|
412
|
+
};
|
413
|
+
|
414
|
+
} // end namespace internal
|
415
|
+
|
416
|
+
/** Computes / recomputes the Cholesky decomposition A = LL^* = U^*U of \a matrix
|
417
|
+
*
|
418
|
+
* \returns a reference to *this
|
419
|
+
*
|
420
|
+
* Example: \include TutorialLinAlgComputeTwice.cpp
|
421
|
+
* Output: \verbinclude TutorialLinAlgComputeTwice.out
|
422
|
+
*/
|
423
|
+
template<typename MatrixType, int _UpLo>
|
424
|
+
template<typename InputType>
|
425
|
+
LLT<MatrixType,_UpLo>& LLT<MatrixType,_UpLo>::compute(const EigenBase<InputType>& a)
|
426
|
+
{
|
427
|
+
check_template_parameters();
|
428
|
+
|
429
|
+
eigen_assert(a.rows()==a.cols());
|
430
|
+
const Index size = a.rows();
|
431
|
+
m_matrix.resize(size, size);
|
432
|
+
if (!internal::is_same_dense(m_matrix, a.derived()))
|
433
|
+
m_matrix = a.derived();
|
434
|
+
|
435
|
+
// Compute matrix L1 norm = max abs column sum.
|
436
|
+
m_l1_norm = RealScalar(0);
|
437
|
+
// TODO move this code to SelfAdjointView
|
438
|
+
for (Index col = 0; col < size; ++col) {
|
439
|
+
RealScalar abs_col_sum;
|
440
|
+
if (_UpLo == Lower)
|
441
|
+
abs_col_sum = m_matrix.col(col).tail(size - col).template lpNorm<1>() + m_matrix.row(col).head(col).template lpNorm<1>();
|
442
|
+
else
|
443
|
+
abs_col_sum = m_matrix.col(col).head(col).template lpNorm<1>() + m_matrix.row(col).tail(size - col).template lpNorm<1>();
|
444
|
+
if (abs_col_sum > m_l1_norm)
|
445
|
+
m_l1_norm = abs_col_sum;
|
446
|
+
}
|
447
|
+
|
448
|
+
m_isInitialized = true;
|
449
|
+
bool ok = Traits::inplace_decomposition(m_matrix);
|
450
|
+
m_info = ok ? Success : NumericalIssue;
|
451
|
+
|
452
|
+
return *this;
|
453
|
+
}
|
454
|
+
|
455
|
+
/** Performs a rank one update (or dowdate) of the current decomposition.
|
456
|
+
* If A = LL^* before the rank one update,
|
457
|
+
* then after it we have LL^* = A + sigma * v v^* where \a v must be a vector
|
458
|
+
* of same dimension.
|
459
|
+
*/
|
460
|
+
template<typename _MatrixType, int _UpLo>
|
461
|
+
template<typename VectorType>
|
462
|
+
LLT<_MatrixType,_UpLo> LLT<_MatrixType,_UpLo>::rankUpdate(const VectorType& v, const RealScalar& sigma)
|
463
|
+
{
|
464
|
+
EIGEN_STATIC_ASSERT_VECTOR_ONLY(VectorType);
|
465
|
+
eigen_assert(v.size()==m_matrix.cols());
|
466
|
+
eigen_assert(m_isInitialized);
|
467
|
+
if(internal::llt_inplace<typename MatrixType::Scalar, UpLo>::rankUpdate(m_matrix,v,sigma)>=0)
|
468
|
+
m_info = NumericalIssue;
|
469
|
+
else
|
470
|
+
m_info = Success;
|
471
|
+
|
472
|
+
return *this;
|
473
|
+
}
|
474
|
+
|
475
|
+
#ifndef EIGEN_PARSED_BY_DOXYGEN
|
476
|
+
template<typename _MatrixType,int _UpLo>
|
477
|
+
template<typename RhsType, typename DstType>
|
478
|
+
void LLT<_MatrixType,_UpLo>::_solve_impl(const RhsType &rhs, DstType &dst) const
|
479
|
+
{
|
480
|
+
dst = rhs;
|
481
|
+
solveInPlace(dst);
|
482
|
+
}
|
483
|
+
#endif
|
484
|
+
|
485
|
+
/** \internal use x = llt_object.solve(x);
|
486
|
+
*
|
487
|
+
* This is the \em in-place version of solve().
|
488
|
+
*
|
489
|
+
* \param bAndX represents both the right-hand side matrix b and result x.
|
490
|
+
*
|
491
|
+
* This version avoids a copy when the right hand side matrix b is not needed anymore.
|
492
|
+
*
|
493
|
+
* \warning The parameter is only marked 'const' to make the C++ compiler accept a temporary expression here.
|
494
|
+
* This function will const_cast it, so constness isn't honored here.
|
495
|
+
*
|
496
|
+
* \sa LLT::solve(), MatrixBase::llt()
|
497
|
+
*/
|
498
|
+
template<typename MatrixType, int _UpLo>
|
499
|
+
template<typename Derived>
|
500
|
+
void LLT<MatrixType,_UpLo>::solveInPlace(const MatrixBase<Derived> &bAndX) const
|
501
|
+
{
|
502
|
+
eigen_assert(m_isInitialized && "LLT is not initialized.");
|
503
|
+
eigen_assert(m_matrix.rows()==bAndX.rows());
|
504
|
+
matrixL().solveInPlace(bAndX);
|
505
|
+
matrixU().solveInPlace(bAndX);
|
506
|
+
}
|
507
|
+
|
508
|
+
/** \returns the matrix represented by the decomposition,
|
509
|
+
* i.e., it returns the product: L L^*.
|
510
|
+
* This function is provided for debug purpose. */
|
511
|
+
template<typename MatrixType, int _UpLo>
|
512
|
+
MatrixType LLT<MatrixType,_UpLo>::reconstructedMatrix() const
|
513
|
+
{
|
514
|
+
eigen_assert(m_isInitialized && "LLT is not initialized.");
|
515
|
+
return matrixL() * matrixL().adjoint().toDenseMatrix();
|
516
|
+
}
|
517
|
+
|
518
|
+
/** \cholesky_module
|
519
|
+
* \returns the LLT decomposition of \c *this
|
520
|
+
* \sa SelfAdjointView::llt()
|
521
|
+
*/
|
522
|
+
template<typename Derived>
|
523
|
+
inline const LLT<typename MatrixBase<Derived>::PlainObject>
|
524
|
+
MatrixBase<Derived>::llt() const
|
525
|
+
{
|
526
|
+
return LLT<PlainObject>(derived());
|
527
|
+
}
|
528
|
+
|
529
|
+
/** \cholesky_module
|
530
|
+
* \returns the LLT decomposition of \c *this
|
531
|
+
* \sa SelfAdjointView::llt()
|
532
|
+
*/
|
533
|
+
template<typename MatrixType, unsigned int UpLo>
|
534
|
+
inline const LLT<typename SelfAdjointView<MatrixType, UpLo>::PlainObject, UpLo>
|
535
|
+
SelfAdjointView<MatrixType, UpLo>::llt() const
|
536
|
+
{
|
537
|
+
return LLT<PlainObject,UpLo>(m_matrix);
|
538
|
+
}
|
539
|
+
|
540
|
+
} // end namespace Eigen
|
541
|
+
|
542
|
+
#endif // EIGEN_LLT_H
|