tomoto 0.1.0

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Files changed (420) hide show
  1. checksums.yaml +7 -0
  2. data/CHANGELOG.md +3 -0
  3. data/LICENSE.txt +22 -0
  4. data/README.md +123 -0
  5. data/ext/tomoto/ext.cpp +245 -0
  6. data/ext/tomoto/extconf.rb +28 -0
  7. data/lib/tomoto.rb +12 -0
  8. data/lib/tomoto/ct.rb +11 -0
  9. data/lib/tomoto/hdp.rb +11 -0
  10. data/lib/tomoto/lda.rb +67 -0
  11. data/lib/tomoto/version.rb +3 -0
  12. data/vendor/EigenRand/EigenRand/Core.h +1139 -0
  13. data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
  14. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
  15. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
  16. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
  17. data/vendor/EigenRand/EigenRand/EigenRand +19 -0
  18. data/vendor/EigenRand/EigenRand/Macro.h +24 -0
  19. data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
  20. data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
  21. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
  22. data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
  23. data/vendor/EigenRand/EigenRand/doc.h +220 -0
  24. data/vendor/EigenRand/LICENSE +21 -0
  25. data/vendor/EigenRand/README.md +288 -0
  26. data/vendor/eigen/COPYING.BSD +26 -0
  27. data/vendor/eigen/COPYING.GPL +674 -0
  28. data/vendor/eigen/COPYING.LGPL +502 -0
  29. data/vendor/eigen/COPYING.MINPACK +52 -0
  30. data/vendor/eigen/COPYING.MPL2 +373 -0
  31. data/vendor/eigen/COPYING.README +18 -0
  32. data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
  33. data/vendor/eigen/Eigen/Cholesky +46 -0
  34. data/vendor/eigen/Eigen/CholmodSupport +48 -0
  35. data/vendor/eigen/Eigen/Core +537 -0
  36. data/vendor/eigen/Eigen/Dense +7 -0
  37. data/vendor/eigen/Eigen/Eigen +2 -0
  38. data/vendor/eigen/Eigen/Eigenvalues +61 -0
  39. data/vendor/eigen/Eigen/Geometry +62 -0
  40. data/vendor/eigen/Eigen/Householder +30 -0
  41. data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
  42. data/vendor/eigen/Eigen/Jacobi +33 -0
  43. data/vendor/eigen/Eigen/LU +50 -0
  44. data/vendor/eigen/Eigen/MetisSupport +35 -0
  45. data/vendor/eigen/Eigen/OrderingMethods +73 -0
  46. data/vendor/eigen/Eigen/PaStiXSupport +48 -0
  47. data/vendor/eigen/Eigen/PardisoSupport +35 -0
  48. data/vendor/eigen/Eigen/QR +51 -0
  49. data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
  50. data/vendor/eigen/Eigen/SPQRSupport +34 -0
  51. data/vendor/eigen/Eigen/SVD +51 -0
  52. data/vendor/eigen/Eigen/Sparse +36 -0
  53. data/vendor/eigen/Eigen/SparseCholesky +45 -0
  54. data/vendor/eigen/Eigen/SparseCore +69 -0
  55. data/vendor/eigen/Eigen/SparseLU +46 -0
  56. data/vendor/eigen/Eigen/SparseQR +37 -0
  57. data/vendor/eigen/Eigen/StdDeque +27 -0
  58. data/vendor/eigen/Eigen/StdList +26 -0
  59. data/vendor/eigen/Eigen/StdVector +27 -0
  60. data/vendor/eigen/Eigen/SuperLUSupport +64 -0
  61. data/vendor/eigen/Eigen/UmfPackSupport +40 -0
  62. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
  63. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
  64. data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  65. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
  66. data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
  67. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
  68. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
  69. data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
  70. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
  71. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
  72. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
  73. data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
  74. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
  75. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
  76. data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
  77. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
  78. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
  79. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
  80. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
  81. data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  82. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
  84. data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
  85. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
  86. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
  87. data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
  88. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
  89. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
  90. data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
  91. data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
  92. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  93. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
  94. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
  95. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
  96. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
  97. data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
  98. data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
  99. data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
  100. data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
  101. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
  102. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
  103. data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
  104. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
  105. data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
  106. data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
  107. data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
  108. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
  109. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
  110. data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
  111. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
  112. data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
  113. data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
  114. data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
  115. data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
  116. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
  117. data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
  118. data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
  119. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
  120. data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  121. data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
  122. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
  123. data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
  124. data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
  125. data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
  126. data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
  127. data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
  128. data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
  129. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
  130. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
  131. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
  132. data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
  133. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
  134. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
  135. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
  136. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
  137. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
  138. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
  139. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
  140. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
  141. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
  142. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
  143. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
  145. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
  146. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
  148. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
  149. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
  153. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
  154. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
  156. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
  160. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
  161. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
  162. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
  163. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
  164. data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  165. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
  166. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
  167. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
  168. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
  169. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  170. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
  171. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
  172. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  173. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
  174. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
  175. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
  176. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
  177. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  178. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  179. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  180. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
  181. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
  182. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  183. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  184. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
  185. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
  186. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
  187. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
  188. data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
  189. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
  190. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  191. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
  192. data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
  193. data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
  194. data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
  195. data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
  196. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
  197. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
  198. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
  199. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  200. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
  201. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  202. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  203. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  204. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  205. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  206. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  207. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
  208. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
  209. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  210. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
  211. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  212. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
  213. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
  214. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
  215. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
  216. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
  217. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
  218. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
  219. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  220. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
  221. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
  222. data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
  223. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
  224. data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
  225. data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
  226. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
  227. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
  228. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
  229. data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
  230. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
  231. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  232. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
  233. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
  234. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
  235. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
  236. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
  237. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
  238. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
  239. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
  240. data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
  241. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
  242. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
  243. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
  244. data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  245. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
  246. data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  247. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
  248. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
  249. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
  250. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  251. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
  252. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
  253. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  254. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
  255. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
  256. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
  257. data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  258. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
  259. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
  260. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
  261. data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  262. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
  263. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  264. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
  265. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  266. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
  267. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
  268. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  269. data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  270. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
  271. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
  272. data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  273. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
  274. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
  275. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
  276. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
  277. data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  278. data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
  279. data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  280. data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
  281. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
  282. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
  283. data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  284. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
  285. data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
  295. data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  296. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
  297. data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  298. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  299. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  300. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  307. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  308. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  309. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  310. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  311. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  312. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  313. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
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  315. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
  316. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
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  318. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
  319. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
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  322. data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
  323. data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
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  328. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
  329. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
  330. data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
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  332. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  333. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
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  338. data/vendor/eigen/bench/tensors/README +21 -0
  339. data/vendor/eigen/blas/README.txt +6 -0
  340. data/vendor/eigen/demos/mandelbrot/README +10 -0
  341. data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
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  343. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
  344. data/vendor/eigen/unsupported/README.txt +50 -0
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  346. data/vendor/tomotopy/README.kr.rst +375 -0
  347. data/vendor/tomotopy/README.rst +382 -0
  348. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
  349. data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
  350. data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
  351. data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
  352. data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
  353. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
  354. data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
  355. data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
  356. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
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  358. data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
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  360. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
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  362. data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
  363. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
  364. data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
  365. data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
  366. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
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  369. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
  370. data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
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  372. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
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  374. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
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  376. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
  377. data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
  378. data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
  379. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
  380. data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
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  382. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
  383. data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
  384. data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
  385. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
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  395. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
  396. data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
  397. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
  398. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
  399. data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
  400. data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
  401. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
  402. data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
  403. data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
  404. data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
  405. data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
  406. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
  407. data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
  408. data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
  409. data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
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  414. data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
  415. data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
  416. data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
  417. data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
  418. data/vendor/tomotopy/src/Utils/text.hpp +49 -0
  419. data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
  420. metadata +531 -0
@@ -0,0 +1,570 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
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+ // Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
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+ // Copyright (C) 2006-2009 Benoit Jacob <jacob.benoit.1@gmail.com>
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+ // Copyright (C) 2010-2013 Hauke Heibel <hauke.heibel@gmail.com>
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+ //
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+ // This Source Code Form is subject to the terms of the Mozilla
9
+ // Public License v. 2.0. If a copy of the MPL was not distributed
10
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
11
+
12
+ #ifndef EIGEN_MATRIXSTORAGE_H
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+ #define EIGEN_MATRIXSTORAGE_H
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+
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+ #ifdef EIGEN_DENSE_STORAGE_CTOR_PLUGIN
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+ #define EIGEN_INTERNAL_DENSE_STORAGE_CTOR_PLUGIN(X) X; EIGEN_DENSE_STORAGE_CTOR_PLUGIN;
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+ #else
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+ #define EIGEN_INTERNAL_DENSE_STORAGE_CTOR_PLUGIN(X)
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+ #endif
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+
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+ namespace Eigen {
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+
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+ namespace internal {
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+
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+ struct constructor_without_unaligned_array_assert {};
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+
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+ template<typename T, int Size>
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+ EIGEN_DEVICE_FUNC
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+ void check_static_allocation_size()
30
+ {
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+ // if EIGEN_STACK_ALLOCATION_LIMIT is defined to 0, then no limit
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+ #if EIGEN_STACK_ALLOCATION_LIMIT
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+ EIGEN_STATIC_ASSERT(Size * sizeof(T) <= EIGEN_STACK_ALLOCATION_LIMIT, OBJECT_ALLOCATED_ON_STACK_IS_TOO_BIG);
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+ #endif
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+ }
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+
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+ /** \internal
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+ * Static array. If the MatrixOrArrayOptions require auto-alignment, the array will be automatically aligned:
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+ * to 16 bytes boundary if the total size is a multiple of 16 bytes.
40
+ */
41
+ template <typename T, int Size, int MatrixOrArrayOptions,
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+ int Alignment = (MatrixOrArrayOptions&DontAlign) ? 0
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+ : compute_default_alignment<T,Size>::value >
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+ struct plain_array
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+ {
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+ T array[Size];
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+
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+ EIGEN_DEVICE_FUNC
49
+ plain_array()
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+ {
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+ check_static_allocation_size<T,Size>();
52
+ }
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+
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+ EIGEN_DEVICE_FUNC
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+ plain_array(constructor_without_unaligned_array_assert)
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+ {
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+ check_static_allocation_size<T,Size>();
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+ }
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+ };
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+
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+ #if defined(EIGEN_DISABLE_UNALIGNED_ARRAY_ASSERT)
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+ #define EIGEN_MAKE_UNALIGNED_ARRAY_ASSERT(sizemask)
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+ #elif EIGEN_GNUC_AT_LEAST(4,7)
64
+ // GCC 4.7 is too aggressive in its optimizations and remove the alignement test based on the fact the array is declared to be aligned.
65
+ // See this bug report: http://gcc.gnu.org/bugzilla/show_bug.cgi?id=53900
66
+ // Hiding the origin of the array pointer behind a function argument seems to do the trick even if the function is inlined:
67
+ template<typename PtrType>
68
+ EIGEN_ALWAYS_INLINE PtrType eigen_unaligned_array_assert_workaround_gcc47(PtrType array) { return array; }
69
+ #define EIGEN_MAKE_UNALIGNED_ARRAY_ASSERT(sizemask) \
70
+ eigen_assert((internal::UIntPtr(eigen_unaligned_array_assert_workaround_gcc47(array)) & (sizemask)) == 0 \
71
+ && "this assertion is explained here: " \
72
+ "http://eigen.tuxfamily.org/dox-devel/group__TopicUnalignedArrayAssert.html" \
73
+ " **** READ THIS WEB PAGE !!! ****");
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+ #else
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+ #define EIGEN_MAKE_UNALIGNED_ARRAY_ASSERT(sizemask) \
76
+ eigen_assert((internal::UIntPtr(array) & (sizemask)) == 0 \
77
+ && "this assertion is explained here: " \
78
+ "http://eigen.tuxfamily.org/dox-devel/group__TopicUnalignedArrayAssert.html" \
79
+ " **** READ THIS WEB PAGE !!! ****");
80
+ #endif
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+
82
+ template <typename T, int Size, int MatrixOrArrayOptions>
83
+ struct plain_array<T, Size, MatrixOrArrayOptions, 8>
84
+ {
85
+ EIGEN_ALIGN_TO_BOUNDARY(8) T array[Size];
86
+
87
+ EIGEN_DEVICE_FUNC
88
+ plain_array()
89
+ {
90
+ EIGEN_MAKE_UNALIGNED_ARRAY_ASSERT(7);
91
+ check_static_allocation_size<T,Size>();
92
+ }
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+
94
+ EIGEN_DEVICE_FUNC
95
+ plain_array(constructor_without_unaligned_array_assert)
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+ {
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+ check_static_allocation_size<T,Size>();
98
+ }
99
+ };
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+
101
+ template <typename T, int Size, int MatrixOrArrayOptions>
102
+ struct plain_array<T, Size, MatrixOrArrayOptions, 16>
103
+ {
104
+ EIGEN_ALIGN_TO_BOUNDARY(16) T array[Size];
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+
106
+ EIGEN_DEVICE_FUNC
107
+ plain_array()
108
+ {
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+ EIGEN_MAKE_UNALIGNED_ARRAY_ASSERT(15);
110
+ check_static_allocation_size<T,Size>();
111
+ }
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+
113
+ EIGEN_DEVICE_FUNC
114
+ plain_array(constructor_without_unaligned_array_assert)
115
+ {
116
+ check_static_allocation_size<T,Size>();
117
+ }
118
+ };
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+
120
+ template <typename T, int Size, int MatrixOrArrayOptions>
121
+ struct plain_array<T, Size, MatrixOrArrayOptions, 32>
122
+ {
123
+ EIGEN_ALIGN_TO_BOUNDARY(32) T array[Size];
124
+
125
+ EIGEN_DEVICE_FUNC
126
+ plain_array()
127
+ {
128
+ EIGEN_MAKE_UNALIGNED_ARRAY_ASSERT(31);
129
+ check_static_allocation_size<T,Size>();
130
+ }
131
+
132
+ EIGEN_DEVICE_FUNC
133
+ plain_array(constructor_without_unaligned_array_assert)
134
+ {
135
+ check_static_allocation_size<T,Size>();
136
+ }
137
+ };
138
+
139
+ template <typename T, int Size, int MatrixOrArrayOptions>
140
+ struct plain_array<T, Size, MatrixOrArrayOptions, 64>
141
+ {
142
+ EIGEN_ALIGN_TO_BOUNDARY(64) T array[Size];
143
+
144
+ EIGEN_DEVICE_FUNC
145
+ plain_array()
146
+ {
147
+ EIGEN_MAKE_UNALIGNED_ARRAY_ASSERT(63);
148
+ check_static_allocation_size<T,Size>();
149
+ }
150
+
151
+ EIGEN_DEVICE_FUNC
152
+ plain_array(constructor_without_unaligned_array_assert)
153
+ {
154
+ check_static_allocation_size<T,Size>();
155
+ }
156
+ };
157
+
158
+ template <typename T, int MatrixOrArrayOptions, int Alignment>
159
+ struct plain_array<T, 0, MatrixOrArrayOptions, Alignment>
160
+ {
161
+ T array[1];
162
+ EIGEN_DEVICE_FUNC plain_array() {}
163
+ EIGEN_DEVICE_FUNC plain_array(constructor_without_unaligned_array_assert) {}
164
+ };
165
+
166
+ } // end namespace internal
167
+
168
+ /** \internal
169
+ *
170
+ * \class DenseStorage
171
+ * \ingroup Core_Module
172
+ *
173
+ * \brief Stores the data of a matrix
174
+ *
175
+ * This class stores the data of fixed-size, dynamic-size or mixed matrices
176
+ * in a way as compact as possible.
177
+ *
178
+ * \sa Matrix
179
+ */
180
+ template<typename T, int Size, int _Rows, int _Cols, int _Options> class DenseStorage;
181
+
182
+ // purely fixed-size matrix
183
+ template<typename T, int Size, int _Rows, int _Cols, int _Options> class DenseStorage
184
+ {
185
+ internal::plain_array<T,Size,_Options> m_data;
186
+ public:
187
+ EIGEN_DEVICE_FUNC DenseStorage() {
188
+ EIGEN_INTERNAL_DENSE_STORAGE_CTOR_PLUGIN(Index size = Size)
189
+ }
190
+ EIGEN_DEVICE_FUNC
191
+ explicit DenseStorage(internal::constructor_without_unaligned_array_assert)
192
+ : m_data(internal::constructor_without_unaligned_array_assert()) {}
193
+ EIGEN_DEVICE_FUNC
194
+ DenseStorage(const DenseStorage& other) : m_data(other.m_data) {
195
+ EIGEN_INTERNAL_DENSE_STORAGE_CTOR_PLUGIN(Index size = Size)
196
+ }
197
+ EIGEN_DEVICE_FUNC
198
+ DenseStorage& operator=(const DenseStorage& other)
199
+ {
200
+ if (this != &other) m_data = other.m_data;
201
+ return *this;
202
+ }
203
+ EIGEN_DEVICE_FUNC DenseStorage(Index size, Index rows, Index cols) {
204
+ EIGEN_INTERNAL_DENSE_STORAGE_CTOR_PLUGIN({})
205
+ eigen_internal_assert(size==rows*cols && rows==_Rows && cols==_Cols);
206
+ EIGEN_UNUSED_VARIABLE(size);
207
+ EIGEN_UNUSED_VARIABLE(rows);
208
+ EIGEN_UNUSED_VARIABLE(cols);
209
+ }
210
+ EIGEN_DEVICE_FUNC void swap(DenseStorage& other) { std::swap(m_data,other.m_data); }
211
+ EIGEN_DEVICE_FUNC static Index rows(void) {return _Rows;}
212
+ EIGEN_DEVICE_FUNC static Index cols(void) {return _Cols;}
213
+ EIGEN_DEVICE_FUNC void conservativeResize(Index,Index,Index) {}
214
+ EIGEN_DEVICE_FUNC void resize(Index,Index,Index) {}
215
+ EIGEN_DEVICE_FUNC const T *data() const { return m_data.array; }
216
+ EIGEN_DEVICE_FUNC T *data() { return m_data.array; }
217
+ };
218
+
219
+ // null matrix
220
+ template<typename T, int _Rows, int _Cols, int _Options> class DenseStorage<T, 0, _Rows, _Cols, _Options>
221
+ {
222
+ public:
223
+ EIGEN_DEVICE_FUNC DenseStorage() {}
224
+ EIGEN_DEVICE_FUNC explicit DenseStorage(internal::constructor_without_unaligned_array_assert) {}
225
+ EIGEN_DEVICE_FUNC DenseStorage(const DenseStorage&) {}
226
+ EIGEN_DEVICE_FUNC DenseStorage& operator=(const DenseStorage&) { return *this; }
227
+ EIGEN_DEVICE_FUNC DenseStorage(Index,Index,Index) {}
228
+ EIGEN_DEVICE_FUNC void swap(DenseStorage& ) {}
229
+ EIGEN_DEVICE_FUNC static Index rows(void) {return _Rows;}
230
+ EIGEN_DEVICE_FUNC static Index cols(void) {return _Cols;}
231
+ EIGEN_DEVICE_FUNC void conservativeResize(Index,Index,Index) {}
232
+ EIGEN_DEVICE_FUNC void resize(Index,Index,Index) {}
233
+ EIGEN_DEVICE_FUNC const T *data() const { return 0; }
234
+ EIGEN_DEVICE_FUNC T *data() { return 0; }
235
+ };
236
+
237
+ // more specializations for null matrices; these are necessary to resolve ambiguities
238
+ template<typename T, int _Options> class DenseStorage<T, 0, Dynamic, Dynamic, _Options>
239
+ : public DenseStorage<T, 0, 0, 0, _Options> { };
240
+
241
+ template<typename T, int _Rows, int _Options> class DenseStorage<T, 0, _Rows, Dynamic, _Options>
242
+ : public DenseStorage<T, 0, 0, 0, _Options> { };
243
+
244
+ template<typename T, int _Cols, int _Options> class DenseStorage<T, 0, Dynamic, _Cols, _Options>
245
+ : public DenseStorage<T, 0, 0, 0, _Options> { };
246
+
247
+ // dynamic-size matrix with fixed-size storage
248
+ template<typename T, int Size, int _Options> class DenseStorage<T, Size, Dynamic, Dynamic, _Options>
249
+ {
250
+ internal::plain_array<T,Size,_Options> m_data;
251
+ Index m_rows;
252
+ Index m_cols;
253
+ public:
254
+ EIGEN_DEVICE_FUNC DenseStorage() : m_rows(0), m_cols(0) {}
255
+ EIGEN_DEVICE_FUNC explicit DenseStorage(internal::constructor_without_unaligned_array_assert)
256
+ : m_data(internal::constructor_without_unaligned_array_assert()), m_rows(0), m_cols(0) {}
257
+ EIGEN_DEVICE_FUNC DenseStorage(const DenseStorage& other) : m_data(other.m_data), m_rows(other.m_rows), m_cols(other.m_cols) {}
258
+ EIGEN_DEVICE_FUNC DenseStorage& operator=(const DenseStorage& other)
259
+ {
260
+ if (this != &other)
261
+ {
262
+ m_data = other.m_data;
263
+ m_rows = other.m_rows;
264
+ m_cols = other.m_cols;
265
+ }
266
+ return *this;
267
+ }
268
+ EIGEN_DEVICE_FUNC DenseStorage(Index, Index rows, Index cols) : m_rows(rows), m_cols(cols) {}
269
+ EIGEN_DEVICE_FUNC void swap(DenseStorage& other)
270
+ { std::swap(m_data,other.m_data); std::swap(m_rows,other.m_rows); std::swap(m_cols,other.m_cols); }
271
+ EIGEN_DEVICE_FUNC Index rows() const {return m_rows;}
272
+ EIGEN_DEVICE_FUNC Index cols() const {return m_cols;}
273
+ EIGEN_DEVICE_FUNC void conservativeResize(Index, Index rows, Index cols) { m_rows = rows; m_cols = cols; }
274
+ EIGEN_DEVICE_FUNC void resize(Index, Index rows, Index cols) { m_rows = rows; m_cols = cols; }
275
+ EIGEN_DEVICE_FUNC const T *data() const { return m_data.array; }
276
+ EIGEN_DEVICE_FUNC T *data() { return m_data.array; }
277
+ };
278
+
279
+ // dynamic-size matrix with fixed-size storage and fixed width
280
+ template<typename T, int Size, int _Cols, int _Options> class DenseStorage<T, Size, Dynamic, _Cols, _Options>
281
+ {
282
+ internal::plain_array<T,Size,_Options> m_data;
283
+ Index m_rows;
284
+ public:
285
+ EIGEN_DEVICE_FUNC DenseStorage() : m_rows(0) {}
286
+ EIGEN_DEVICE_FUNC explicit DenseStorage(internal::constructor_without_unaligned_array_assert)
287
+ : m_data(internal::constructor_without_unaligned_array_assert()), m_rows(0) {}
288
+ EIGEN_DEVICE_FUNC DenseStorage(const DenseStorage& other) : m_data(other.m_data), m_rows(other.m_rows) {}
289
+ EIGEN_DEVICE_FUNC DenseStorage& operator=(const DenseStorage& other)
290
+ {
291
+ if (this != &other)
292
+ {
293
+ m_data = other.m_data;
294
+ m_rows = other.m_rows;
295
+ }
296
+ return *this;
297
+ }
298
+ EIGEN_DEVICE_FUNC DenseStorage(Index, Index rows, Index) : m_rows(rows) {}
299
+ EIGEN_DEVICE_FUNC void swap(DenseStorage& other) { std::swap(m_data,other.m_data); std::swap(m_rows,other.m_rows); }
300
+ EIGEN_DEVICE_FUNC Index rows(void) const {return m_rows;}
301
+ EIGEN_DEVICE_FUNC Index cols(void) const {return _Cols;}
302
+ EIGEN_DEVICE_FUNC void conservativeResize(Index, Index rows, Index) { m_rows = rows; }
303
+ EIGEN_DEVICE_FUNC void resize(Index, Index rows, Index) { m_rows = rows; }
304
+ EIGEN_DEVICE_FUNC const T *data() const { return m_data.array; }
305
+ EIGEN_DEVICE_FUNC T *data() { return m_data.array; }
306
+ };
307
+
308
+ // dynamic-size matrix with fixed-size storage and fixed height
309
+ template<typename T, int Size, int _Rows, int _Options> class DenseStorage<T, Size, _Rows, Dynamic, _Options>
310
+ {
311
+ internal::plain_array<T,Size,_Options> m_data;
312
+ Index m_cols;
313
+ public:
314
+ EIGEN_DEVICE_FUNC DenseStorage() : m_cols(0) {}
315
+ EIGEN_DEVICE_FUNC explicit DenseStorage(internal::constructor_without_unaligned_array_assert)
316
+ : m_data(internal::constructor_without_unaligned_array_assert()), m_cols(0) {}
317
+ EIGEN_DEVICE_FUNC DenseStorage(const DenseStorage& other) : m_data(other.m_data), m_cols(other.m_cols) {}
318
+ EIGEN_DEVICE_FUNC DenseStorage& operator=(const DenseStorage& other)
319
+ {
320
+ if (this != &other)
321
+ {
322
+ m_data = other.m_data;
323
+ m_cols = other.m_cols;
324
+ }
325
+ return *this;
326
+ }
327
+ EIGEN_DEVICE_FUNC DenseStorage(Index, Index, Index cols) : m_cols(cols) {}
328
+ EIGEN_DEVICE_FUNC void swap(DenseStorage& other) { std::swap(m_data,other.m_data); std::swap(m_cols,other.m_cols); }
329
+ EIGEN_DEVICE_FUNC Index rows(void) const {return _Rows;}
330
+ EIGEN_DEVICE_FUNC Index cols(void) const {return m_cols;}
331
+ void conservativeResize(Index, Index, Index cols) { m_cols = cols; }
332
+ void resize(Index, Index, Index cols) { m_cols = cols; }
333
+ EIGEN_DEVICE_FUNC const T *data() const { return m_data.array; }
334
+ EIGEN_DEVICE_FUNC T *data() { return m_data.array; }
335
+ };
336
+
337
+ // purely dynamic matrix.
338
+ template<typename T, int _Options> class DenseStorage<T, Dynamic, Dynamic, Dynamic, _Options>
339
+ {
340
+ T *m_data;
341
+ Index m_rows;
342
+ Index m_cols;
343
+ public:
344
+ EIGEN_DEVICE_FUNC DenseStorage() : m_data(0), m_rows(0), m_cols(0) {}
345
+ EIGEN_DEVICE_FUNC explicit DenseStorage(internal::constructor_without_unaligned_array_assert)
346
+ : m_data(0), m_rows(0), m_cols(0) {}
347
+ EIGEN_DEVICE_FUNC DenseStorage(Index size, Index rows, Index cols)
348
+ : m_data(internal::conditional_aligned_new_auto<T,(_Options&DontAlign)==0>(size)), m_rows(rows), m_cols(cols)
349
+ {
350
+ EIGEN_INTERNAL_DENSE_STORAGE_CTOR_PLUGIN({})
351
+ eigen_internal_assert(size==rows*cols && rows>=0 && cols >=0);
352
+ }
353
+ EIGEN_DEVICE_FUNC DenseStorage(const DenseStorage& other)
354
+ : m_data(internal::conditional_aligned_new_auto<T,(_Options&DontAlign)==0>(other.m_rows*other.m_cols))
355
+ , m_rows(other.m_rows)
356
+ , m_cols(other.m_cols)
357
+ {
358
+ EIGEN_INTERNAL_DENSE_STORAGE_CTOR_PLUGIN(Index size = m_rows*m_cols)
359
+ internal::smart_copy(other.m_data, other.m_data+other.m_rows*other.m_cols, m_data);
360
+ }
361
+ EIGEN_DEVICE_FUNC DenseStorage& operator=(const DenseStorage& other)
362
+ {
363
+ if (this != &other)
364
+ {
365
+ DenseStorage tmp(other);
366
+ this->swap(tmp);
367
+ }
368
+ return *this;
369
+ }
370
+ #if EIGEN_HAS_RVALUE_REFERENCES
371
+ EIGEN_DEVICE_FUNC
372
+ DenseStorage(DenseStorage&& other) EIGEN_NOEXCEPT
373
+ : m_data(std::move(other.m_data))
374
+ , m_rows(std::move(other.m_rows))
375
+ , m_cols(std::move(other.m_cols))
376
+ {
377
+ other.m_data = nullptr;
378
+ other.m_rows = 0;
379
+ other.m_cols = 0;
380
+ }
381
+ EIGEN_DEVICE_FUNC
382
+ DenseStorage& operator=(DenseStorage&& other) EIGEN_NOEXCEPT
383
+ {
384
+ using std::swap;
385
+ swap(m_data, other.m_data);
386
+ swap(m_rows, other.m_rows);
387
+ swap(m_cols, other.m_cols);
388
+ return *this;
389
+ }
390
+ #endif
391
+ EIGEN_DEVICE_FUNC ~DenseStorage() { internal::conditional_aligned_delete_auto<T,(_Options&DontAlign)==0>(m_data, m_rows*m_cols); }
392
+ EIGEN_DEVICE_FUNC void swap(DenseStorage& other)
393
+ { std::swap(m_data,other.m_data); std::swap(m_rows,other.m_rows); std::swap(m_cols,other.m_cols); }
394
+ EIGEN_DEVICE_FUNC Index rows(void) const {return m_rows;}
395
+ EIGEN_DEVICE_FUNC Index cols(void) const {return m_cols;}
396
+ void conservativeResize(Index size, Index rows, Index cols)
397
+ {
398
+ m_data = internal::conditional_aligned_realloc_new_auto<T,(_Options&DontAlign)==0>(m_data, size, m_rows*m_cols);
399
+ m_rows = rows;
400
+ m_cols = cols;
401
+ }
402
+ EIGEN_DEVICE_FUNC void resize(Index size, Index rows, Index cols)
403
+ {
404
+ if(size != m_rows*m_cols)
405
+ {
406
+ internal::conditional_aligned_delete_auto<T,(_Options&DontAlign)==0>(m_data, m_rows*m_cols);
407
+ if (size)
408
+ m_data = internal::conditional_aligned_new_auto<T,(_Options&DontAlign)==0>(size);
409
+ else
410
+ m_data = 0;
411
+ EIGEN_INTERNAL_DENSE_STORAGE_CTOR_PLUGIN({})
412
+ }
413
+ m_rows = rows;
414
+ m_cols = cols;
415
+ }
416
+ EIGEN_DEVICE_FUNC const T *data() const { return m_data; }
417
+ EIGEN_DEVICE_FUNC T *data() { return m_data; }
418
+ };
419
+
420
+ // matrix with dynamic width and fixed height (so that matrix has dynamic size).
421
+ template<typename T, int _Rows, int _Options> class DenseStorage<T, Dynamic, _Rows, Dynamic, _Options>
422
+ {
423
+ T *m_data;
424
+ Index m_cols;
425
+ public:
426
+ EIGEN_DEVICE_FUNC DenseStorage() : m_data(0), m_cols(0) {}
427
+ explicit DenseStorage(internal::constructor_without_unaligned_array_assert) : m_data(0), m_cols(0) {}
428
+ EIGEN_DEVICE_FUNC DenseStorage(Index size, Index rows, Index cols) : m_data(internal::conditional_aligned_new_auto<T,(_Options&DontAlign)==0>(size)), m_cols(cols)
429
+ {
430
+ EIGEN_INTERNAL_DENSE_STORAGE_CTOR_PLUGIN({})
431
+ eigen_internal_assert(size==rows*cols && rows==_Rows && cols >=0);
432
+ EIGEN_UNUSED_VARIABLE(rows);
433
+ }
434
+ EIGEN_DEVICE_FUNC DenseStorage(const DenseStorage& other)
435
+ : m_data(internal::conditional_aligned_new_auto<T,(_Options&DontAlign)==0>(_Rows*other.m_cols))
436
+ , m_cols(other.m_cols)
437
+ {
438
+ EIGEN_INTERNAL_DENSE_STORAGE_CTOR_PLUGIN(Index size = m_cols*_Rows)
439
+ internal::smart_copy(other.m_data, other.m_data+_Rows*m_cols, m_data);
440
+ }
441
+ EIGEN_DEVICE_FUNC DenseStorage& operator=(const DenseStorage& other)
442
+ {
443
+ if (this != &other)
444
+ {
445
+ DenseStorage tmp(other);
446
+ this->swap(tmp);
447
+ }
448
+ return *this;
449
+ }
450
+ #if EIGEN_HAS_RVALUE_REFERENCES
451
+ EIGEN_DEVICE_FUNC
452
+ DenseStorage(DenseStorage&& other) EIGEN_NOEXCEPT
453
+ : m_data(std::move(other.m_data))
454
+ , m_cols(std::move(other.m_cols))
455
+ {
456
+ other.m_data = nullptr;
457
+ other.m_cols = 0;
458
+ }
459
+ EIGEN_DEVICE_FUNC
460
+ DenseStorage& operator=(DenseStorage&& other) EIGEN_NOEXCEPT
461
+ {
462
+ using std::swap;
463
+ swap(m_data, other.m_data);
464
+ swap(m_cols, other.m_cols);
465
+ return *this;
466
+ }
467
+ #endif
468
+ EIGEN_DEVICE_FUNC ~DenseStorage() { internal::conditional_aligned_delete_auto<T,(_Options&DontAlign)==0>(m_data, _Rows*m_cols); }
469
+ EIGEN_DEVICE_FUNC void swap(DenseStorage& other) { std::swap(m_data,other.m_data); std::swap(m_cols,other.m_cols); }
470
+ EIGEN_DEVICE_FUNC static Index rows(void) {return _Rows;}
471
+ EIGEN_DEVICE_FUNC Index cols(void) const {return m_cols;}
472
+ EIGEN_DEVICE_FUNC void conservativeResize(Index size, Index, Index cols)
473
+ {
474
+ m_data = internal::conditional_aligned_realloc_new_auto<T,(_Options&DontAlign)==0>(m_data, size, _Rows*m_cols);
475
+ m_cols = cols;
476
+ }
477
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void resize(Index size, Index, Index cols)
478
+ {
479
+ if(size != _Rows*m_cols)
480
+ {
481
+ internal::conditional_aligned_delete_auto<T,(_Options&DontAlign)==0>(m_data, _Rows*m_cols);
482
+ if (size)
483
+ m_data = internal::conditional_aligned_new_auto<T,(_Options&DontAlign)==0>(size);
484
+ else
485
+ m_data = 0;
486
+ EIGEN_INTERNAL_DENSE_STORAGE_CTOR_PLUGIN({})
487
+ }
488
+ m_cols = cols;
489
+ }
490
+ EIGEN_DEVICE_FUNC const T *data() const { return m_data; }
491
+ EIGEN_DEVICE_FUNC T *data() { return m_data; }
492
+ };
493
+
494
+ // matrix with dynamic height and fixed width (so that matrix has dynamic size).
495
+ template<typename T, int _Cols, int _Options> class DenseStorage<T, Dynamic, Dynamic, _Cols, _Options>
496
+ {
497
+ T *m_data;
498
+ Index m_rows;
499
+ public:
500
+ EIGEN_DEVICE_FUNC DenseStorage() : m_data(0), m_rows(0) {}
501
+ explicit DenseStorage(internal::constructor_without_unaligned_array_assert) : m_data(0), m_rows(0) {}
502
+ EIGEN_DEVICE_FUNC DenseStorage(Index size, Index rows, Index cols) : m_data(internal::conditional_aligned_new_auto<T,(_Options&DontAlign)==0>(size)), m_rows(rows)
503
+ {
504
+ EIGEN_INTERNAL_DENSE_STORAGE_CTOR_PLUGIN({})
505
+ eigen_internal_assert(size==rows*cols && rows>=0 && cols == _Cols);
506
+ EIGEN_UNUSED_VARIABLE(cols);
507
+ }
508
+ EIGEN_DEVICE_FUNC DenseStorage(const DenseStorage& other)
509
+ : m_data(internal::conditional_aligned_new_auto<T,(_Options&DontAlign)==0>(other.m_rows*_Cols))
510
+ , m_rows(other.m_rows)
511
+ {
512
+ EIGEN_INTERNAL_DENSE_STORAGE_CTOR_PLUGIN(Index size = m_rows*_Cols)
513
+ internal::smart_copy(other.m_data, other.m_data+other.m_rows*_Cols, m_data);
514
+ }
515
+ EIGEN_DEVICE_FUNC DenseStorage& operator=(const DenseStorage& other)
516
+ {
517
+ if (this != &other)
518
+ {
519
+ DenseStorage tmp(other);
520
+ this->swap(tmp);
521
+ }
522
+ return *this;
523
+ }
524
+ #if EIGEN_HAS_RVALUE_REFERENCES
525
+ EIGEN_DEVICE_FUNC
526
+ DenseStorage(DenseStorage&& other) EIGEN_NOEXCEPT
527
+ : m_data(std::move(other.m_data))
528
+ , m_rows(std::move(other.m_rows))
529
+ {
530
+ other.m_data = nullptr;
531
+ other.m_rows = 0;
532
+ }
533
+ EIGEN_DEVICE_FUNC
534
+ DenseStorage& operator=(DenseStorage&& other) EIGEN_NOEXCEPT
535
+ {
536
+ using std::swap;
537
+ swap(m_data, other.m_data);
538
+ swap(m_rows, other.m_rows);
539
+ return *this;
540
+ }
541
+ #endif
542
+ EIGEN_DEVICE_FUNC ~DenseStorage() { internal::conditional_aligned_delete_auto<T,(_Options&DontAlign)==0>(m_data, _Cols*m_rows); }
543
+ EIGEN_DEVICE_FUNC void swap(DenseStorage& other) { std::swap(m_data,other.m_data); std::swap(m_rows,other.m_rows); }
544
+ EIGEN_DEVICE_FUNC Index rows(void) const {return m_rows;}
545
+ EIGEN_DEVICE_FUNC static Index cols(void) {return _Cols;}
546
+ void conservativeResize(Index size, Index rows, Index)
547
+ {
548
+ m_data = internal::conditional_aligned_realloc_new_auto<T,(_Options&DontAlign)==0>(m_data, size, m_rows*_Cols);
549
+ m_rows = rows;
550
+ }
551
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void resize(Index size, Index rows, Index)
552
+ {
553
+ if(size != m_rows*_Cols)
554
+ {
555
+ internal::conditional_aligned_delete_auto<T,(_Options&DontAlign)==0>(m_data, _Cols*m_rows);
556
+ if (size)
557
+ m_data = internal::conditional_aligned_new_auto<T,(_Options&DontAlign)==0>(size);
558
+ else
559
+ m_data = 0;
560
+ EIGEN_INTERNAL_DENSE_STORAGE_CTOR_PLUGIN({})
561
+ }
562
+ m_rows = rows;
563
+ }
564
+ EIGEN_DEVICE_FUNC const T *data() const { return m_data; }
565
+ EIGEN_DEVICE_FUNC T *data() { return m_data; }
566
+ };
567
+
568
+ } // end namespace Eigen
569
+
570
+ #endif // EIGEN_MATRIX_H