tomoto 0.1.0

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Files changed (420) hide show
  1. checksums.yaml +7 -0
  2. data/CHANGELOG.md +3 -0
  3. data/LICENSE.txt +22 -0
  4. data/README.md +123 -0
  5. data/ext/tomoto/ext.cpp +245 -0
  6. data/ext/tomoto/extconf.rb +28 -0
  7. data/lib/tomoto.rb +12 -0
  8. data/lib/tomoto/ct.rb +11 -0
  9. data/lib/tomoto/hdp.rb +11 -0
  10. data/lib/tomoto/lda.rb +67 -0
  11. data/lib/tomoto/version.rb +3 -0
  12. data/vendor/EigenRand/EigenRand/Core.h +1139 -0
  13. data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
  14. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
  15. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
  16. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
  17. data/vendor/EigenRand/EigenRand/EigenRand +19 -0
  18. data/vendor/EigenRand/EigenRand/Macro.h +24 -0
  19. data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
  20. data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
  21. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
  22. data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
  23. data/vendor/EigenRand/EigenRand/doc.h +220 -0
  24. data/vendor/EigenRand/LICENSE +21 -0
  25. data/vendor/EigenRand/README.md +288 -0
  26. data/vendor/eigen/COPYING.BSD +26 -0
  27. data/vendor/eigen/COPYING.GPL +674 -0
  28. data/vendor/eigen/COPYING.LGPL +502 -0
  29. data/vendor/eigen/COPYING.MINPACK +52 -0
  30. data/vendor/eigen/COPYING.MPL2 +373 -0
  31. data/vendor/eigen/COPYING.README +18 -0
  32. data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
  33. data/vendor/eigen/Eigen/Cholesky +46 -0
  34. data/vendor/eigen/Eigen/CholmodSupport +48 -0
  35. data/vendor/eigen/Eigen/Core +537 -0
  36. data/vendor/eigen/Eigen/Dense +7 -0
  37. data/vendor/eigen/Eigen/Eigen +2 -0
  38. data/vendor/eigen/Eigen/Eigenvalues +61 -0
  39. data/vendor/eigen/Eigen/Geometry +62 -0
  40. data/vendor/eigen/Eigen/Householder +30 -0
  41. data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
  42. data/vendor/eigen/Eigen/Jacobi +33 -0
  43. data/vendor/eigen/Eigen/LU +50 -0
  44. data/vendor/eigen/Eigen/MetisSupport +35 -0
  45. data/vendor/eigen/Eigen/OrderingMethods +73 -0
  46. data/vendor/eigen/Eigen/PaStiXSupport +48 -0
  47. data/vendor/eigen/Eigen/PardisoSupport +35 -0
  48. data/vendor/eigen/Eigen/QR +51 -0
  49. data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
  50. data/vendor/eigen/Eigen/SPQRSupport +34 -0
  51. data/vendor/eigen/Eigen/SVD +51 -0
  52. data/vendor/eigen/Eigen/Sparse +36 -0
  53. data/vendor/eigen/Eigen/SparseCholesky +45 -0
  54. data/vendor/eigen/Eigen/SparseCore +69 -0
  55. data/vendor/eigen/Eigen/SparseLU +46 -0
  56. data/vendor/eigen/Eigen/SparseQR +37 -0
  57. data/vendor/eigen/Eigen/StdDeque +27 -0
  58. data/vendor/eigen/Eigen/StdList +26 -0
  59. data/vendor/eigen/Eigen/StdVector +27 -0
  60. data/vendor/eigen/Eigen/SuperLUSupport +64 -0
  61. data/vendor/eigen/Eigen/UmfPackSupport +40 -0
  62. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
  63. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
  64. data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  65. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
  66. data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
  67. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
  68. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
  69. data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
  70. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
  71. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
  72. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
  73. data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
  74. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
  75. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
  76. data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
  77. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
  78. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
  79. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
  80. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
  81. data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  82. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
  84. data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
  85. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
  86. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
  87. data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
  88. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
  89. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
  90. data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
  91. data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
  92. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  93. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
  94. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
  95. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
  96. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
  97. data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
  98. data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
  99. data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
  100. data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
  101. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
  102. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
  103. data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
  104. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
  105. data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
  106. data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
  107. data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
  108. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
  109. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
  110. data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
  111. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
  112. data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
  113. data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
  114. data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
  115. data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
  116. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
  117. data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
  118. data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
  119. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
  120. data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  121. data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
  122. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
  123. data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
  124. data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
  125. data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
  126. data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
  127. data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
  128. data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
  129. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
  130. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
  131. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
  132. data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
  133. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
  134. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
  135. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
  136. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
  137. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
  138. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
  139. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
  140. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
  141. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
  142. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
  143. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
  145. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
  146. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
  148. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
  149. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
  153. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
  154. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
  156. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
  160. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
  161. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
  162. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
  163. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
  164. data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  165. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
  166. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
  167. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
  168. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
  169. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  170. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
  171. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
  172. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  173. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
  174. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
  175. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
  176. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
  177. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  178. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  179. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  180. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
  181. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
  182. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  183. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  184. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
  185. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
  186. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
  187. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
  188. data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
  189. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
  190. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  191. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
  192. data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
  193. data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
  194. data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
  195. data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
  196. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
  197. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
  198. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
  199. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  200. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
  201. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  202. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  203. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  204. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  205. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  206. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  207. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
  208. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
  209. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  210. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
  211. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  212. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
  213. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
  214. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
  215. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
  216. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
  217. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
  218. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
  219. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  220. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
  221. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
  222. data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
  223. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
  224. data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
  225. data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
  226. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
  227. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
  228. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
  229. data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
  230. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
  231. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  232. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
  233. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
  234. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
  235. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
  236. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
  237. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
  238. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
  239. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
  240. data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
  241. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
  242. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
  243. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
  244. data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  245. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
  246. data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  247. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
  248. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
  249. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
  250. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  251. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
  252. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
  253. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  254. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
  255. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
  256. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
  257. data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  258. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
  259. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
  260. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
  261. data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  262. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
  263. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  264. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
  265. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  266. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
  267. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
  268. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  269. data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  270. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
  271. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
  272. data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  273. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
  274. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
  275. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
  276. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
  277. data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  278. data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
  279. data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  280. data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
  281. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
  282. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
  283. data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  284. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
  285. data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
  295. data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  296. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
  297. data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  298. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  299. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  300. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  307. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  308. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  309. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
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  312. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  313. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
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  315. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
  316. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
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  318. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
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  322. data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
  323. data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
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  328. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
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  332. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  333. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
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  344. data/vendor/eigen/unsupported/README.txt +50 -0
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  346. data/vendor/tomotopy/README.kr.rst +375 -0
  347. data/vendor/tomotopy/README.rst +382 -0
  348. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
  349. data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
  350. data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
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  352. data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
  353. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
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  356. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
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  358. data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
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  360. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
  361. data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
  362. data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
  363. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
  364. data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
  365. data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
  366. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
  367. data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
  368. data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
  369. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
  370. data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
  371. data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
  372. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
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  374. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
  375. data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
  376. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
  377. data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
  378. data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
  379. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
  380. data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
  381. data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
  382. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
  383. data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
  384. data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
  385. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
  386. data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
  387. data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
  388. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
  389. data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
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  391. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
  392. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
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  395. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
  396. data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
  397. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
  398. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
  399. data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
  400. data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
  401. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
  402. data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
  403. data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
  404. data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
  405. data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
  406. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
  407. data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
  408. data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
  409. data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
  410. data/vendor/tomotopy/src/Utils/exception.h +28 -0
  411. data/vendor/tomotopy/src/Utils/math.h +281 -0
  412. data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
  413. data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
  414. data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
  415. data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
  416. data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
  417. data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
  418. data/vendor/tomotopy/src/Utils/text.hpp +49 -0
  419. data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
  420. metadata +531 -0
@@ -0,0 +1,593 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ // Copyright (C) 2006-2008 Benoit Jacob <jacob.benoit.1@gmail.com>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_GENERIC_PACKET_MATH_H
12
+ #define EIGEN_GENERIC_PACKET_MATH_H
13
+
14
+ namespace Eigen {
15
+
16
+ namespace internal {
17
+
18
+ /** \internal
19
+ * \file GenericPacketMath.h
20
+ *
21
+ * Default implementation for types not supported by the vectorization.
22
+ * In practice these functions are provided to make easier the writing
23
+ * of generic vectorized code.
24
+ */
25
+
26
+ #ifndef EIGEN_DEBUG_ALIGNED_LOAD
27
+ #define EIGEN_DEBUG_ALIGNED_LOAD
28
+ #endif
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+
30
+ #ifndef EIGEN_DEBUG_UNALIGNED_LOAD
31
+ #define EIGEN_DEBUG_UNALIGNED_LOAD
32
+ #endif
33
+
34
+ #ifndef EIGEN_DEBUG_ALIGNED_STORE
35
+ #define EIGEN_DEBUG_ALIGNED_STORE
36
+ #endif
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+
38
+ #ifndef EIGEN_DEBUG_UNALIGNED_STORE
39
+ #define EIGEN_DEBUG_UNALIGNED_STORE
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+ #endif
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+
42
+ struct default_packet_traits
43
+ {
44
+ enum {
45
+ HasHalfPacket = 0,
46
+
47
+ HasAdd = 1,
48
+ HasSub = 1,
49
+ HasMul = 1,
50
+ HasNegate = 1,
51
+ HasAbs = 1,
52
+ HasArg = 0,
53
+ HasAbs2 = 1,
54
+ HasMin = 1,
55
+ HasMax = 1,
56
+ HasConj = 1,
57
+ HasSetLinear = 1,
58
+ HasBlend = 0,
59
+
60
+ HasDiv = 0,
61
+ HasSqrt = 0,
62
+ HasRsqrt = 0,
63
+ HasExp = 0,
64
+ HasLog = 0,
65
+ HasLog1p = 0,
66
+ HasLog10 = 0,
67
+ HasPow = 0,
68
+
69
+ HasSin = 0,
70
+ HasCos = 0,
71
+ HasTan = 0,
72
+ HasASin = 0,
73
+ HasACos = 0,
74
+ HasATan = 0,
75
+ HasSinh = 0,
76
+ HasCosh = 0,
77
+ HasTanh = 0,
78
+ HasLGamma = 0,
79
+ HasDiGamma = 0,
80
+ HasZeta = 0,
81
+ HasPolygamma = 0,
82
+ HasErf = 0,
83
+ HasErfc = 0,
84
+ HasIGamma = 0,
85
+ HasIGammac = 0,
86
+ HasBetaInc = 0,
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+
88
+ HasRound = 0,
89
+ HasFloor = 0,
90
+ HasCeil = 0,
91
+
92
+ HasSign = 0
93
+ };
94
+ };
95
+
96
+ template<typename T> struct packet_traits : default_packet_traits
97
+ {
98
+ typedef T type;
99
+ typedef T half;
100
+ enum {
101
+ Vectorizable = 0,
102
+ size = 1,
103
+ AlignedOnScalar = 0,
104
+ HasHalfPacket = 0
105
+ };
106
+ enum {
107
+ HasAdd = 0,
108
+ HasSub = 0,
109
+ HasMul = 0,
110
+ HasNegate = 0,
111
+ HasAbs = 0,
112
+ HasAbs2 = 0,
113
+ HasMin = 0,
114
+ HasMax = 0,
115
+ HasConj = 0,
116
+ HasSetLinear = 0
117
+ };
118
+ };
119
+
120
+ template<typename T> struct packet_traits<const T> : packet_traits<T> { };
121
+
122
+ template <typename Src, typename Tgt> struct type_casting_traits {
123
+ enum {
124
+ VectorizedCast = 0,
125
+ SrcCoeffRatio = 1,
126
+ TgtCoeffRatio = 1
127
+ };
128
+ };
129
+
130
+
131
+ /** \internal \returns static_cast<TgtType>(a) (coeff-wise) */
132
+ template <typename SrcPacket, typename TgtPacket>
133
+ EIGEN_DEVICE_FUNC inline TgtPacket
134
+ pcast(const SrcPacket& a) {
135
+ return static_cast<TgtPacket>(a);
136
+ }
137
+ template <typename SrcPacket, typename TgtPacket>
138
+ EIGEN_DEVICE_FUNC inline TgtPacket
139
+ pcast(const SrcPacket& a, const SrcPacket& /*b*/) {
140
+ return static_cast<TgtPacket>(a);
141
+ }
142
+
143
+ template <typename SrcPacket, typename TgtPacket>
144
+ EIGEN_DEVICE_FUNC inline TgtPacket
145
+ pcast(const SrcPacket& a, const SrcPacket& /*b*/, const SrcPacket& /*c*/, const SrcPacket& /*d*/) {
146
+ return static_cast<TgtPacket>(a);
147
+ }
148
+
149
+ /** \internal \returns a + b (coeff-wise) */
150
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
151
+ padd(const Packet& a,
152
+ const Packet& b) { return a+b; }
153
+
154
+ /** \internal \returns a - b (coeff-wise) */
155
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
156
+ psub(const Packet& a,
157
+ const Packet& b) { return a-b; }
158
+
159
+ /** \internal \returns -a (coeff-wise) */
160
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
161
+ pnegate(const Packet& a) { return -a; }
162
+
163
+ /** \internal \returns conj(a) (coeff-wise) */
164
+
165
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
166
+ pconj(const Packet& a) { return numext::conj(a); }
167
+
168
+ /** \internal \returns a * b (coeff-wise) */
169
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
170
+ pmul(const Packet& a,
171
+ const Packet& b) { return a*b; }
172
+
173
+ /** \internal \returns a / b (coeff-wise) */
174
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
175
+ pdiv(const Packet& a,
176
+ const Packet& b) { return a/b; }
177
+
178
+ /** \internal \returns the min of \a a and \a b (coeff-wise) */
179
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
180
+ pmin(const Packet& a,
181
+ const Packet& b) { return numext::mini(a, b); }
182
+
183
+ /** \internal \returns the max of \a a and \a b (coeff-wise) */
184
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
185
+ pmax(const Packet& a,
186
+ const Packet& b) { return numext::maxi(a, b); }
187
+
188
+ /** \internal \returns the absolute value of \a a */
189
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
190
+ pabs(const Packet& a) { using std::abs; return abs(a); }
191
+
192
+ /** \internal \returns the phase angle of \a a */
193
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
194
+ parg(const Packet& a) { using numext::arg; return arg(a); }
195
+
196
+ /** \internal \returns the bitwise and of \a a and \a b */
197
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
198
+ pand(const Packet& a, const Packet& b) { return a & b; }
199
+
200
+ /** \internal \returns the bitwise or of \a a and \a b */
201
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
202
+ por(const Packet& a, const Packet& b) { return a | b; }
203
+
204
+ /** \internal \returns the bitwise xor of \a a and \a b */
205
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
206
+ pxor(const Packet& a, const Packet& b) { return a ^ b; }
207
+
208
+ /** \internal \returns the bitwise andnot of \a a and \a b */
209
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
210
+ pandnot(const Packet& a, const Packet& b) { return a & (!b); }
211
+
212
+ /** \internal \returns a packet version of \a *from, from must be 16 bytes aligned */
213
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
214
+ pload(const typename unpacket_traits<Packet>::type* from) { return *from; }
215
+
216
+ /** \internal \returns a packet version of \a *from, (un-aligned load) */
217
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
218
+ ploadu(const typename unpacket_traits<Packet>::type* from) { return *from; }
219
+
220
+ /** \internal \returns a packet with constant coefficients \a a, e.g.: (a,a,a,a) */
221
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
222
+ pset1(const typename unpacket_traits<Packet>::type& a) { return a; }
223
+
224
+ /** \internal \returns a packet with constant coefficients \a a[0], e.g.: (a[0],a[0],a[0],a[0]) */
225
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
226
+ pload1(const typename unpacket_traits<Packet>::type *a) { return pset1<Packet>(*a); }
227
+
228
+ /** \internal \returns a packet with elements of \a *from duplicated.
229
+ * For instance, for a packet of 8 elements, 4 scalars will be read from \a *from and
230
+ * duplicated to form: {from[0],from[0],from[1],from[1],from[2],from[2],from[3],from[3]}
231
+ * Currently, this function is only used for scalar * complex products.
232
+ */
233
+ template<typename Packet> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet
234
+ ploaddup(const typename unpacket_traits<Packet>::type* from) { return *from; }
235
+
236
+ /** \internal \returns a packet with elements of \a *from quadrupled.
237
+ * For instance, for a packet of 8 elements, 2 scalars will be read from \a *from and
238
+ * replicated to form: {from[0],from[0],from[0],from[0],from[1],from[1],from[1],from[1]}
239
+ * Currently, this function is only used in matrix products.
240
+ * For packet-size smaller or equal to 4, this function is equivalent to pload1
241
+ */
242
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
243
+ ploadquad(const typename unpacket_traits<Packet>::type* from)
244
+ { return pload1<Packet>(from); }
245
+
246
+ /** \internal equivalent to
247
+ * \code
248
+ * a0 = pload1(a+0);
249
+ * a1 = pload1(a+1);
250
+ * a2 = pload1(a+2);
251
+ * a3 = pload1(a+3);
252
+ * \endcode
253
+ * \sa pset1, pload1, ploaddup, pbroadcast2
254
+ */
255
+ template<typename Packet> EIGEN_DEVICE_FUNC
256
+ inline void pbroadcast4(const typename unpacket_traits<Packet>::type *a,
257
+ Packet& a0, Packet& a1, Packet& a2, Packet& a3)
258
+ {
259
+ a0 = pload1<Packet>(a+0);
260
+ a1 = pload1<Packet>(a+1);
261
+ a2 = pload1<Packet>(a+2);
262
+ a3 = pload1<Packet>(a+3);
263
+ }
264
+
265
+ /** \internal equivalent to
266
+ * \code
267
+ * a0 = pload1(a+0);
268
+ * a1 = pload1(a+1);
269
+ * \endcode
270
+ * \sa pset1, pload1, ploaddup, pbroadcast4
271
+ */
272
+ template<typename Packet> EIGEN_DEVICE_FUNC
273
+ inline void pbroadcast2(const typename unpacket_traits<Packet>::type *a,
274
+ Packet& a0, Packet& a1)
275
+ {
276
+ a0 = pload1<Packet>(a+0);
277
+ a1 = pload1<Packet>(a+1);
278
+ }
279
+
280
+ /** \internal \brief Returns a packet with coefficients (a,a+1,...,a+packet_size-1). */
281
+ template<typename Packet> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Packet
282
+ plset(const typename unpacket_traits<Packet>::type& a) { return a; }
283
+
284
+ /** \internal copy the packet \a from to \a *to, \a to must be 16 bytes aligned */
285
+ template<typename Scalar, typename Packet> EIGEN_DEVICE_FUNC inline void pstore(Scalar* to, const Packet& from)
286
+ { (*to) = from; }
287
+
288
+ /** \internal copy the packet \a from to \a *to, (un-aligned store) */
289
+ template<typename Scalar, typename Packet> EIGEN_DEVICE_FUNC inline void pstoreu(Scalar* to, const Packet& from)
290
+ { (*to) = from; }
291
+
292
+ template<typename Scalar, typename Packet> EIGEN_DEVICE_FUNC inline Packet pgather(const Scalar* from, Index /*stride*/)
293
+ { return ploadu<Packet>(from); }
294
+
295
+ template<typename Scalar, typename Packet> EIGEN_DEVICE_FUNC inline void pscatter(Scalar* to, const Packet& from, Index /*stride*/)
296
+ { pstore(to, from); }
297
+
298
+ /** \internal tries to do cache prefetching of \a addr */
299
+ template<typename Scalar> EIGEN_DEVICE_FUNC inline void prefetch(const Scalar* addr)
300
+ {
301
+ #ifdef __CUDA_ARCH__
302
+ #if defined(__LP64__)
303
+ // 64-bit pointer operand constraint for inlined asm
304
+ asm(" prefetch.L1 [ %1 ];" : "=l"(addr) : "l"(addr));
305
+ #else
306
+ // 32-bit pointer operand constraint for inlined asm
307
+ asm(" prefetch.L1 [ %1 ];" : "=r"(addr) : "r"(addr));
308
+ #endif
309
+ #elif (!EIGEN_COMP_MSVC) && (EIGEN_COMP_GNUC || EIGEN_COMP_CLANG || EIGEN_COMP_ICC)
310
+ __builtin_prefetch(addr);
311
+ #endif
312
+ }
313
+
314
+ /** \internal \returns the first element of a packet */
315
+ template<typename Packet> EIGEN_DEVICE_FUNC inline typename unpacket_traits<Packet>::type pfirst(const Packet& a)
316
+ { return a; }
317
+
318
+ /** \internal \returns a packet where the element i contains the sum of the packet of \a vec[i] */
319
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
320
+ preduxp(const Packet* vecs) { return vecs[0]; }
321
+
322
+ /** \internal \returns the sum of the elements of \a a*/
323
+ template<typename Packet> EIGEN_DEVICE_FUNC inline typename unpacket_traits<Packet>::type predux(const Packet& a)
324
+ { return a; }
325
+
326
+ /** \internal \returns the sum of the elements of \a a by block of 4 elements.
327
+ * For a packet {a0, a1, a2, a3, a4, a5, a6, a7}, it returns a half packet {a0+a4, a1+a5, a2+a6, a3+a7}
328
+ * For packet-size smaller or equal to 4, this boils down to a noop.
329
+ */
330
+ template<typename Packet> EIGEN_DEVICE_FUNC inline
331
+ typename conditional<(unpacket_traits<Packet>::size%8)==0,typename unpacket_traits<Packet>::half,Packet>::type
332
+ predux_downto4(const Packet& a)
333
+ { return a; }
334
+
335
+ /** \internal \returns the product of the elements of \a a*/
336
+ template<typename Packet> EIGEN_DEVICE_FUNC inline typename unpacket_traits<Packet>::type predux_mul(const Packet& a)
337
+ { return a; }
338
+
339
+ /** \internal \returns the min of the elements of \a a*/
340
+ template<typename Packet> EIGEN_DEVICE_FUNC inline typename unpacket_traits<Packet>::type predux_min(const Packet& a)
341
+ { return a; }
342
+
343
+ /** \internal \returns the max of the elements of \a a*/
344
+ template<typename Packet> EIGEN_DEVICE_FUNC inline typename unpacket_traits<Packet>::type predux_max(const Packet& a)
345
+ { return a; }
346
+
347
+ /** \internal \returns the reversed elements of \a a*/
348
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet preverse(const Packet& a)
349
+ { return a; }
350
+
351
+ /** \internal \returns \a a with real and imaginary part flipped (for complex type only) */
352
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet pcplxflip(const Packet& a)
353
+ {
354
+ // FIXME: uncomment the following in case we drop the internal imag and real functions.
355
+ // using std::imag;
356
+ // using std::real;
357
+ return Packet(imag(a),real(a));
358
+ }
359
+
360
+ /**************************
361
+ * Special math functions
362
+ ***************************/
363
+
364
+ /** \internal \returns the sine of \a a (coeff-wise) */
365
+ template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
366
+ Packet psin(const Packet& a) { using std::sin; return sin(a); }
367
+
368
+ /** \internal \returns the cosine of \a a (coeff-wise) */
369
+ template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
370
+ Packet pcos(const Packet& a) { using std::cos; return cos(a); }
371
+
372
+ /** \internal \returns the tan of \a a (coeff-wise) */
373
+ template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
374
+ Packet ptan(const Packet& a) { using std::tan; return tan(a); }
375
+
376
+ /** \internal \returns the arc sine of \a a (coeff-wise) */
377
+ template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
378
+ Packet pasin(const Packet& a) { using std::asin; return asin(a); }
379
+
380
+ /** \internal \returns the arc cosine of \a a (coeff-wise) */
381
+ template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
382
+ Packet pacos(const Packet& a) { using std::acos; return acos(a); }
383
+
384
+ /** \internal \returns the arc tangent of \a a (coeff-wise) */
385
+ template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
386
+ Packet patan(const Packet& a) { using std::atan; return atan(a); }
387
+
388
+ /** \internal \returns the hyperbolic sine of \a a (coeff-wise) */
389
+ template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
390
+ Packet psinh(const Packet& a) { using std::sinh; return sinh(a); }
391
+
392
+ /** \internal \returns the hyperbolic cosine of \a a (coeff-wise) */
393
+ template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
394
+ Packet pcosh(const Packet& a) { using std::cosh; return cosh(a); }
395
+
396
+ /** \internal \returns the hyperbolic tan of \a a (coeff-wise) */
397
+ template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
398
+ Packet ptanh(const Packet& a) { using std::tanh; return tanh(a); }
399
+
400
+ /** \internal \returns the exp of \a a (coeff-wise) */
401
+ template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
402
+ Packet pexp(const Packet& a) { using std::exp; return exp(a); }
403
+
404
+ /** \internal \returns the log of \a a (coeff-wise) */
405
+ template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
406
+ Packet plog(const Packet& a) { using std::log; return log(a); }
407
+
408
+ /** \internal \returns the log1p of \a a (coeff-wise) */
409
+ template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
410
+ Packet plog1p(const Packet& a) { return numext::log1p(a); }
411
+
412
+ /** \internal \returns the log10 of \a a (coeff-wise) */
413
+ template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
414
+ Packet plog10(const Packet& a) { using std::log10; return log10(a); }
415
+
416
+ /** \internal \returns the square-root of \a a (coeff-wise) */
417
+ template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
418
+ Packet psqrt(const Packet& a) { using std::sqrt; return sqrt(a); }
419
+
420
+ /** \internal \returns the reciprocal square-root of \a a (coeff-wise) */
421
+ template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
422
+ Packet prsqrt(const Packet& a) {
423
+ return pdiv(pset1<Packet>(1), psqrt(a));
424
+ }
425
+
426
+ /** \internal \returns the rounded value of \a a (coeff-wise) */
427
+ template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
428
+ Packet pround(const Packet& a) { using numext::round; return round(a); }
429
+
430
+ /** \internal \returns the floor of \a a (coeff-wise) */
431
+ template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
432
+ Packet pfloor(const Packet& a) { using numext::floor; return floor(a); }
433
+
434
+ /** \internal \returns the ceil of \a a (coeff-wise) */
435
+ template<typename Packet> EIGEN_DECLARE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS
436
+ Packet pceil(const Packet& a) { using numext::ceil; return ceil(a); }
437
+
438
+ /***************************************************************************
439
+ * The following functions might not have to be overwritten for vectorized types
440
+ ***************************************************************************/
441
+
442
+ /** \internal copy a packet with constant coeficient \a a (e.g., [a,a,a,a]) to \a *to. \a to must be 16 bytes aligned */
443
+ // NOTE: this function must really be templated on the packet type (think about different packet types for the same scalar type)
444
+ template<typename Packet>
445
+ inline void pstore1(typename unpacket_traits<Packet>::type* to, const typename unpacket_traits<Packet>::type& a)
446
+ {
447
+ pstore(to, pset1<Packet>(a));
448
+ }
449
+
450
+ /** \internal \returns a * b + c (coeff-wise) */
451
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
452
+ pmadd(const Packet& a,
453
+ const Packet& b,
454
+ const Packet& c)
455
+ { return padd(pmul(a, b),c); }
456
+
457
+ /** \internal \returns a packet version of \a *from.
458
+ * The pointer \a from must be aligned on a \a Alignment bytes boundary. */
459
+ template<typename Packet, int Alignment>
460
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE Packet ploadt(const typename unpacket_traits<Packet>::type* from)
461
+ {
462
+ if(Alignment >= unpacket_traits<Packet>::alignment)
463
+ return pload<Packet>(from);
464
+ else
465
+ return ploadu<Packet>(from);
466
+ }
467
+
468
+ /** \internal copy the packet \a from to \a *to.
469
+ * The pointer \a from must be aligned on a \a Alignment bytes boundary. */
470
+ template<typename Scalar, typename Packet, int Alignment>
471
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void pstoret(Scalar* to, const Packet& from)
472
+ {
473
+ if(Alignment >= unpacket_traits<Packet>::alignment)
474
+ pstore(to, from);
475
+ else
476
+ pstoreu(to, from);
477
+ }
478
+
479
+ /** \internal \returns a packet version of \a *from.
480
+ * Unlike ploadt, ploadt_ro takes advantage of the read-only memory path on the
481
+ * hardware if available to speedup the loading of data that won't be modified
482
+ * by the current computation.
483
+ */
484
+ template<typename Packet, int LoadMode>
485
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE Packet ploadt_ro(const typename unpacket_traits<Packet>::type* from)
486
+ {
487
+ return ploadt<Packet, LoadMode>(from);
488
+ }
489
+
490
+ /** \internal default implementation of palign() allowing partial specialization */
491
+ template<int Offset,typename PacketType>
492
+ struct palign_impl
493
+ {
494
+ // by default data are aligned, so there is nothing to be done :)
495
+ static inline void run(PacketType&, const PacketType&) {}
496
+ };
497
+
498
+ /** \internal update \a first using the concatenation of the packet_size minus \a Offset last elements
499
+ * of \a first and \a Offset first elements of \a second.
500
+ *
501
+ * This function is currently only used to optimize matrix-vector products on unligned matrices.
502
+ * It takes 2 packets that represent a contiguous memory array, and returns a packet starting
503
+ * at the position \a Offset. For instance, for packets of 4 elements, we have:
504
+ * Input:
505
+ * - first = {f0,f1,f2,f3}
506
+ * - second = {s0,s1,s2,s3}
507
+ * Output:
508
+ * - if Offset==0 then {f0,f1,f2,f3}
509
+ * - if Offset==1 then {f1,f2,f3,s0}
510
+ * - if Offset==2 then {f2,f3,s0,s1}
511
+ * - if Offset==3 then {f3,s0,s1,s3}
512
+ */
513
+ template<int Offset,typename PacketType>
514
+ inline void palign(PacketType& first, const PacketType& second)
515
+ {
516
+ palign_impl<Offset,PacketType>::run(first,second);
517
+ }
518
+
519
+ /***************************************************************************
520
+ * Fast complex products (GCC generates a function call which is very slow)
521
+ ***************************************************************************/
522
+
523
+ // Eigen+CUDA does not support complexes.
524
+ #ifndef __CUDACC__
525
+
526
+ template<> inline std::complex<float> pmul(const std::complex<float>& a, const std::complex<float>& b)
527
+ { return std::complex<float>(real(a)*real(b) - imag(a)*imag(b), imag(a)*real(b) + real(a)*imag(b)); }
528
+
529
+ template<> inline std::complex<double> pmul(const std::complex<double>& a, const std::complex<double>& b)
530
+ { return std::complex<double>(real(a)*real(b) - imag(a)*imag(b), imag(a)*real(b) + real(a)*imag(b)); }
531
+
532
+ #endif
533
+
534
+
535
+ /***************************************************************************
536
+ * PacketBlock, that is a collection of N packets where the number of words
537
+ * in the packet is a multiple of N.
538
+ ***************************************************************************/
539
+ template <typename Packet,int N=unpacket_traits<Packet>::size> struct PacketBlock {
540
+ Packet packet[N];
541
+ };
542
+
543
+ template<typename Packet> EIGEN_DEVICE_FUNC inline void
544
+ ptranspose(PacketBlock<Packet,1>& /*kernel*/) {
545
+ // Nothing to do in the scalar case, i.e. a 1x1 matrix.
546
+ }
547
+
548
+ /***************************************************************************
549
+ * Selector, i.e. vector of N boolean values used to select (i.e. blend)
550
+ * words from 2 packets.
551
+ ***************************************************************************/
552
+ template <size_t N> struct Selector {
553
+ bool select[N];
554
+ };
555
+
556
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
557
+ pblend(const Selector<unpacket_traits<Packet>::size>& ifPacket, const Packet& thenPacket, const Packet& elsePacket) {
558
+ return ifPacket.select[0] ? thenPacket : elsePacket;
559
+ }
560
+
561
+ /** \internal \returns \a a with the first coefficient replaced by the scalar b */
562
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
563
+ pinsertfirst(const Packet& a, typename unpacket_traits<Packet>::type b)
564
+ {
565
+ // Default implementation based on pblend.
566
+ // It must be specialized for higher performance.
567
+ Selector<unpacket_traits<Packet>::size> mask;
568
+ mask.select[0] = true;
569
+ // This for loop should be optimized away by the compiler.
570
+ for(Index i=1; i<unpacket_traits<Packet>::size; ++i)
571
+ mask.select[i] = false;
572
+ return pblend(mask, pset1<Packet>(b), a);
573
+ }
574
+
575
+ /** \internal \returns \a a with the last coefficient replaced by the scalar b */
576
+ template<typename Packet> EIGEN_DEVICE_FUNC inline Packet
577
+ pinsertlast(const Packet& a, typename unpacket_traits<Packet>::type b)
578
+ {
579
+ // Default implementation based on pblend.
580
+ // It must be specialized for higher performance.
581
+ Selector<unpacket_traits<Packet>::size> mask;
582
+ // This for loop should be optimized away by the compiler.
583
+ for(Index i=0; i<unpacket_traits<Packet>::size-1; ++i)
584
+ mask.select[i] = false;
585
+ mask.select[unpacket_traits<Packet>::size-1] = true;
586
+ return pblend(mask, pset1<Packet>(b), a);
587
+ }
588
+
589
+ } // end namespace internal
590
+
591
+ } // end namespace Eigen
592
+
593
+ #endif // EIGEN_GENERIC_PACKET_MATH_H