tomoto 0.1.0

Sign up to get free protection for your applications and to get access to all the features.
Files changed (420) hide show
  1. checksums.yaml +7 -0
  2. data/CHANGELOG.md +3 -0
  3. data/LICENSE.txt +22 -0
  4. data/README.md +123 -0
  5. data/ext/tomoto/ext.cpp +245 -0
  6. data/ext/tomoto/extconf.rb +28 -0
  7. data/lib/tomoto.rb +12 -0
  8. data/lib/tomoto/ct.rb +11 -0
  9. data/lib/tomoto/hdp.rb +11 -0
  10. data/lib/tomoto/lda.rb +67 -0
  11. data/lib/tomoto/version.rb +3 -0
  12. data/vendor/EigenRand/EigenRand/Core.h +1139 -0
  13. data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
  14. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
  15. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
  16. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
  17. data/vendor/EigenRand/EigenRand/EigenRand +19 -0
  18. data/vendor/EigenRand/EigenRand/Macro.h +24 -0
  19. data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
  20. data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
  21. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
  22. data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
  23. data/vendor/EigenRand/EigenRand/doc.h +220 -0
  24. data/vendor/EigenRand/LICENSE +21 -0
  25. data/vendor/EigenRand/README.md +288 -0
  26. data/vendor/eigen/COPYING.BSD +26 -0
  27. data/vendor/eigen/COPYING.GPL +674 -0
  28. data/vendor/eigen/COPYING.LGPL +502 -0
  29. data/vendor/eigen/COPYING.MINPACK +52 -0
  30. data/vendor/eigen/COPYING.MPL2 +373 -0
  31. data/vendor/eigen/COPYING.README +18 -0
  32. data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
  33. data/vendor/eigen/Eigen/Cholesky +46 -0
  34. data/vendor/eigen/Eigen/CholmodSupport +48 -0
  35. data/vendor/eigen/Eigen/Core +537 -0
  36. data/vendor/eigen/Eigen/Dense +7 -0
  37. data/vendor/eigen/Eigen/Eigen +2 -0
  38. data/vendor/eigen/Eigen/Eigenvalues +61 -0
  39. data/vendor/eigen/Eigen/Geometry +62 -0
  40. data/vendor/eigen/Eigen/Householder +30 -0
  41. data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
  42. data/vendor/eigen/Eigen/Jacobi +33 -0
  43. data/vendor/eigen/Eigen/LU +50 -0
  44. data/vendor/eigen/Eigen/MetisSupport +35 -0
  45. data/vendor/eigen/Eigen/OrderingMethods +73 -0
  46. data/vendor/eigen/Eigen/PaStiXSupport +48 -0
  47. data/vendor/eigen/Eigen/PardisoSupport +35 -0
  48. data/vendor/eigen/Eigen/QR +51 -0
  49. data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
  50. data/vendor/eigen/Eigen/SPQRSupport +34 -0
  51. data/vendor/eigen/Eigen/SVD +51 -0
  52. data/vendor/eigen/Eigen/Sparse +36 -0
  53. data/vendor/eigen/Eigen/SparseCholesky +45 -0
  54. data/vendor/eigen/Eigen/SparseCore +69 -0
  55. data/vendor/eigen/Eigen/SparseLU +46 -0
  56. data/vendor/eigen/Eigen/SparseQR +37 -0
  57. data/vendor/eigen/Eigen/StdDeque +27 -0
  58. data/vendor/eigen/Eigen/StdList +26 -0
  59. data/vendor/eigen/Eigen/StdVector +27 -0
  60. data/vendor/eigen/Eigen/SuperLUSupport +64 -0
  61. data/vendor/eigen/Eigen/UmfPackSupport +40 -0
  62. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
  63. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
  64. data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  65. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
  66. data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
  67. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
  68. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
  69. data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
  70. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
  71. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
  72. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
  73. data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
  74. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
  75. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
  76. data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
  77. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
  78. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
  79. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
  80. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
  81. data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  82. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
  84. data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
  85. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
  86. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
  87. data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
  88. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
  89. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
  90. data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
  91. data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
  92. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  93. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
  94. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
  95. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
  96. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
  97. data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
  98. data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
  99. data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
  100. data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
  101. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
  102. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
  103. data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
  104. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
  105. data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
  106. data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
  107. data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
  108. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
  109. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
  110. data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
  111. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
  112. data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
  113. data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
  114. data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
  115. data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
  116. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
  117. data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
  118. data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
  119. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
  120. data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  121. data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
  122. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
  123. data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
  124. data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
  125. data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
  126. data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
  127. data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
  128. data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
  129. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
  130. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
  131. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
  132. data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
  133. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
  134. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
  135. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
  136. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
  137. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
  138. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
  139. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
  140. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
  141. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
  142. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
  143. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
  145. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
  146. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
  148. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
  149. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
  153. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
  154. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
  156. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
  160. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
  161. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
  162. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
  163. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
  164. data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  165. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
  166. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
  167. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
  168. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
  169. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  170. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
  171. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
  172. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  173. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
  174. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
  175. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
  176. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
  177. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  178. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  179. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  180. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
  181. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
  182. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  183. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  184. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
  185. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
  186. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
  187. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
  188. data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
  189. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
  190. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  191. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
  192. data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
  193. data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
  194. data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
  195. data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
  196. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
  197. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
  198. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
  199. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  200. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
  201. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  202. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  203. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  204. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  205. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  206. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  207. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
  208. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
  209. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  210. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
  211. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  212. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
  213. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
  214. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
  215. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
  216. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
  217. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
  218. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
  219. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  220. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
  221. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
  222. data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
  223. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
  224. data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
  225. data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
  226. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
  227. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
  228. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
  229. data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
  230. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
  231. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  232. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
  233. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
  234. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
  235. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
  236. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
  237. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
  238. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
  239. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
  240. data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
  241. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
  242. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
  243. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
  244. data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  245. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
  246. data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  247. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
  248. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
  249. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
  250. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  251. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
  252. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
  253. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  254. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
  255. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
  256. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
  257. data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  258. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
  259. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
  260. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
  261. data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  262. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
  263. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  264. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
  265. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  266. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
  267. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
  268. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  269. data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  270. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
  271. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
  272. data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  273. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
  274. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
  275. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
  276. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
  277. data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  278. data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
  279. data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  280. data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
  281. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
  282. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
  283. data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  284. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
  285. data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
  295. data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  296. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
  297. data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  298. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  299. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  300. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  307. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  308. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  309. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  310. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  311. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  312. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  313. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
  314. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +126 -0
  315. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
  316. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
  317. data/vendor/eigen/Eigen/src/StlSupport/details.h +84 -0
  318. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
  319. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
  320. data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
  321. data/vendor/eigen/Eigen/src/misc/Kernel.h +79 -0
  322. data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
  323. data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
  324. data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
  325. data/vendor/eigen/Eigen/src/misc/lapacke.h +16291 -0
  326. data/vendor/eigen/Eigen/src/misc/lapacke_mangling.h +17 -0
  327. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +332 -0
  328. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
  329. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
  330. data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  331. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +163 -0
  332. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  333. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
  334. data/vendor/eigen/README.md +3 -0
  335. data/vendor/eigen/bench/README.txt +55 -0
  336. data/vendor/eigen/bench/btl/COPYING +340 -0
  337. data/vendor/eigen/bench/btl/README +154 -0
  338. data/vendor/eigen/bench/tensors/README +21 -0
  339. data/vendor/eigen/blas/README.txt +6 -0
  340. data/vendor/eigen/demos/mandelbrot/README +10 -0
  341. data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
  342. data/vendor/eigen/demos/opengl/README +13 -0
  343. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
  344. data/vendor/eigen/unsupported/README.txt +50 -0
  345. data/vendor/tomotopy/LICENSE +21 -0
  346. data/vendor/tomotopy/README.kr.rst +375 -0
  347. data/vendor/tomotopy/README.rst +382 -0
  348. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
  349. data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
  350. data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
  351. data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
  352. data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
  353. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
  354. data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
  355. data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
  356. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
  357. data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
  358. data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
  359. data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
  360. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
  361. data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
  362. data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
  363. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
  364. data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
  365. data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
  366. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
  367. data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
  368. data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
  369. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
  370. data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
  371. data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
  372. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
  373. data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
  374. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
  375. data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
  376. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
  377. data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
  378. data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
  379. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
  380. data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
  381. data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
  382. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
  383. data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
  384. data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
  385. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
  386. data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
  387. data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
  388. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
  389. data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
  390. data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
  391. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
  392. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
  393. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +169 -0
  394. data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
  395. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
  396. data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
  397. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
  398. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
  399. data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
  400. data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
  401. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
  402. data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
  403. data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
  404. data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
  405. data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
  406. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
  407. data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
  408. data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
  409. data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
  410. data/vendor/tomotopy/src/Utils/exception.h +28 -0
  411. data/vendor/tomotopy/src/Utils/math.h +281 -0
  412. data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
  413. data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
  414. data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
  415. data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
  416. data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
  417. data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
  418. data/vendor/tomotopy/src/Utils/text.hpp +49 -0
  419. data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
  420. metadata +531 -0
@@ -0,0 +1,178 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008-2014 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_SPARSEUTIL_H
11
+ #define EIGEN_SPARSEUTIL_H
12
+
13
+ namespace Eigen {
14
+
15
+ #ifdef NDEBUG
16
+ #define EIGEN_DBG_SPARSE(X)
17
+ #else
18
+ #define EIGEN_DBG_SPARSE(X) X
19
+ #endif
20
+
21
+ #define EIGEN_SPARSE_INHERIT_ASSIGNMENT_OPERATOR(Derived, Op) \
22
+ template<typename OtherDerived> \
23
+ EIGEN_STRONG_INLINE Derived& operator Op(const Eigen::SparseMatrixBase<OtherDerived>& other) \
24
+ { \
25
+ return Base::operator Op(other.derived()); \
26
+ } \
27
+ EIGEN_STRONG_INLINE Derived& operator Op(const Derived& other) \
28
+ { \
29
+ return Base::operator Op(other); \
30
+ }
31
+
32
+ #define EIGEN_SPARSE_INHERIT_SCALAR_ASSIGNMENT_OPERATOR(Derived, Op) \
33
+ template<typename Other> \
34
+ EIGEN_STRONG_INLINE Derived& operator Op(const Other& scalar) \
35
+ { \
36
+ return Base::operator Op(scalar); \
37
+ }
38
+
39
+ #define EIGEN_SPARSE_INHERIT_ASSIGNMENT_OPERATORS(Derived) \
40
+ EIGEN_SPARSE_INHERIT_ASSIGNMENT_OPERATOR(Derived, =)
41
+
42
+
43
+ #define EIGEN_SPARSE_PUBLIC_INTERFACE(Derived) \
44
+ EIGEN_GENERIC_PUBLIC_INTERFACE(Derived)
45
+
46
+
47
+ const int CoherentAccessPattern = 0x1;
48
+ const int InnerRandomAccessPattern = 0x2 | CoherentAccessPattern;
49
+ const int OuterRandomAccessPattern = 0x4 | CoherentAccessPattern;
50
+ const int RandomAccessPattern = 0x8 | OuterRandomAccessPattern | InnerRandomAccessPattern;
51
+
52
+ template<typename _Scalar, int _Flags = 0, typename _StorageIndex = int> class SparseMatrix;
53
+ template<typename _Scalar, int _Flags = 0, typename _StorageIndex = int> class DynamicSparseMatrix;
54
+ template<typename _Scalar, int _Flags = 0, typename _StorageIndex = int> class SparseVector;
55
+ template<typename _Scalar, int _Flags = 0, typename _StorageIndex = int> class MappedSparseMatrix;
56
+
57
+ template<typename MatrixType, unsigned int UpLo> class SparseSelfAdjointView;
58
+ template<typename Lhs, typename Rhs> class SparseDiagonalProduct;
59
+ template<typename MatrixType> class SparseView;
60
+
61
+ template<typename Lhs, typename Rhs> class SparseSparseProduct;
62
+ template<typename Lhs, typename Rhs> class SparseTimeDenseProduct;
63
+ template<typename Lhs, typename Rhs> class DenseTimeSparseProduct;
64
+ template<typename Lhs, typename Rhs, bool Transpose> class SparseDenseOuterProduct;
65
+
66
+ template<typename Lhs, typename Rhs> struct SparseSparseProductReturnType;
67
+ template<typename Lhs, typename Rhs,
68
+ int InnerSize = EIGEN_SIZE_MIN_PREFER_FIXED(internal::traits<Lhs>::ColsAtCompileTime,internal::traits<Rhs>::RowsAtCompileTime)> struct DenseSparseProductReturnType;
69
+
70
+ template<typename Lhs, typename Rhs,
71
+ int InnerSize = EIGEN_SIZE_MIN_PREFER_FIXED(internal::traits<Lhs>::ColsAtCompileTime,internal::traits<Rhs>::RowsAtCompileTime)> struct SparseDenseProductReturnType;
72
+ template<typename MatrixType,int UpLo> class SparseSymmetricPermutationProduct;
73
+
74
+ namespace internal {
75
+
76
+ template<typename T,int Rows,int Cols,int Flags> struct sparse_eval;
77
+
78
+ template<typename T> struct eval<T,Sparse>
79
+ : sparse_eval<T, traits<T>::RowsAtCompileTime,traits<T>::ColsAtCompileTime,traits<T>::Flags>
80
+ {};
81
+
82
+ template<typename T,int Cols,int Flags> struct sparse_eval<T,1,Cols,Flags> {
83
+ typedef typename traits<T>::Scalar _Scalar;
84
+ typedef typename traits<T>::StorageIndex _StorageIndex;
85
+ public:
86
+ typedef SparseVector<_Scalar, RowMajor, _StorageIndex> type;
87
+ };
88
+
89
+ template<typename T,int Rows,int Flags> struct sparse_eval<T,Rows,1,Flags> {
90
+ typedef typename traits<T>::Scalar _Scalar;
91
+ typedef typename traits<T>::StorageIndex _StorageIndex;
92
+ public:
93
+ typedef SparseVector<_Scalar, ColMajor, _StorageIndex> type;
94
+ };
95
+
96
+ // TODO this seems almost identical to plain_matrix_type<T, Sparse>
97
+ template<typename T,int Rows,int Cols,int Flags> struct sparse_eval {
98
+ typedef typename traits<T>::Scalar _Scalar;
99
+ typedef typename traits<T>::StorageIndex _StorageIndex;
100
+ enum { _Options = ((Flags&RowMajorBit)==RowMajorBit) ? RowMajor : ColMajor };
101
+ public:
102
+ typedef SparseMatrix<_Scalar, _Options, _StorageIndex> type;
103
+ };
104
+
105
+ template<typename T,int Flags> struct sparse_eval<T,1,1,Flags> {
106
+ typedef typename traits<T>::Scalar _Scalar;
107
+ public:
108
+ typedef Matrix<_Scalar, 1, 1> type;
109
+ };
110
+
111
+ template<typename T> struct plain_matrix_type<T,Sparse>
112
+ {
113
+ typedef typename traits<T>::Scalar _Scalar;
114
+ typedef typename traits<T>::StorageIndex _StorageIndex;
115
+ enum { _Options = ((evaluator<T>::Flags&RowMajorBit)==RowMajorBit) ? RowMajor : ColMajor };
116
+ public:
117
+ typedef SparseMatrix<_Scalar, _Options, _StorageIndex> type;
118
+ };
119
+
120
+ template<typename T>
121
+ struct plain_object_eval<T,Sparse>
122
+ : sparse_eval<T, traits<T>::RowsAtCompileTime,traits<T>::ColsAtCompileTime, evaluator<T>::Flags>
123
+ {};
124
+
125
+ template<typename Decomposition, typename RhsType>
126
+ struct solve_traits<Decomposition,RhsType,Sparse>
127
+ {
128
+ typedef typename sparse_eval<RhsType, RhsType::RowsAtCompileTime, RhsType::ColsAtCompileTime,traits<RhsType>::Flags>::type PlainObject;
129
+ };
130
+
131
+ template<typename Derived>
132
+ struct generic_xpr_base<Derived, MatrixXpr, Sparse>
133
+ {
134
+ typedef SparseMatrixBase<Derived> type;
135
+ };
136
+
137
+ struct SparseTriangularShape { static std::string debugName() { return "SparseTriangularShape"; } };
138
+ struct SparseSelfAdjointShape { static std::string debugName() { return "SparseSelfAdjointShape"; } };
139
+
140
+ template<> struct glue_shapes<SparseShape,SelfAdjointShape> { typedef SparseSelfAdjointShape type; };
141
+ template<> struct glue_shapes<SparseShape,TriangularShape > { typedef SparseTriangularShape type; };
142
+
143
+ } // end namespace internal
144
+
145
+ /** \ingroup SparseCore_Module
146
+ *
147
+ * \class Triplet
148
+ *
149
+ * \brief A small structure to hold a non zero as a triplet (i,j,value).
150
+ *
151
+ * \sa SparseMatrix::setFromTriplets()
152
+ */
153
+ template<typename Scalar, typename StorageIndex=typename SparseMatrix<Scalar>::StorageIndex >
154
+ class Triplet
155
+ {
156
+ public:
157
+ Triplet() : m_row(0), m_col(0), m_value(0) {}
158
+
159
+ Triplet(const StorageIndex& i, const StorageIndex& j, const Scalar& v = Scalar(0))
160
+ : m_row(i), m_col(j), m_value(v)
161
+ {}
162
+
163
+ /** \returns the row index of the element */
164
+ const StorageIndex& row() const { return m_row; }
165
+
166
+ /** \returns the column index of the element */
167
+ const StorageIndex& col() const { return m_col; }
168
+
169
+ /** \returns the value of the element */
170
+ const Scalar& value() const { return m_value; }
171
+ protected:
172
+ StorageIndex m_row, m_col;
173
+ Scalar m_value;
174
+ };
175
+
176
+ } // end namespace Eigen
177
+
178
+ #endif // EIGEN_SPARSEUTIL_H
@@ -0,0 +1,478 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008-2015 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_SPARSEVECTOR_H
11
+ #define EIGEN_SPARSEVECTOR_H
12
+
13
+ namespace Eigen {
14
+
15
+ /** \ingroup SparseCore_Module
16
+ * \class SparseVector
17
+ *
18
+ * \brief a sparse vector class
19
+ *
20
+ * \tparam _Scalar the scalar type, i.e. the type of the coefficients
21
+ *
22
+ * See http://www.netlib.org/linalg/html_templates/node91.html for details on the storage scheme.
23
+ *
24
+ * This class can be extended with the help of the plugin mechanism described on the page
25
+ * \ref TopicCustomizing_Plugins by defining the preprocessor symbol \c EIGEN_SPARSEVECTOR_PLUGIN.
26
+ */
27
+
28
+ namespace internal {
29
+ template<typename _Scalar, int _Options, typename _StorageIndex>
30
+ struct traits<SparseVector<_Scalar, _Options, _StorageIndex> >
31
+ {
32
+ typedef _Scalar Scalar;
33
+ typedef _StorageIndex StorageIndex;
34
+ typedef Sparse StorageKind;
35
+ typedef MatrixXpr XprKind;
36
+ enum {
37
+ IsColVector = (_Options & RowMajorBit) ? 0 : 1,
38
+
39
+ RowsAtCompileTime = IsColVector ? Dynamic : 1,
40
+ ColsAtCompileTime = IsColVector ? 1 : Dynamic,
41
+ MaxRowsAtCompileTime = RowsAtCompileTime,
42
+ MaxColsAtCompileTime = ColsAtCompileTime,
43
+ Flags = _Options | NestByRefBit | LvalueBit | (IsColVector ? 0 : RowMajorBit) | CompressedAccessBit,
44
+ SupportedAccessPatterns = InnerRandomAccessPattern
45
+ };
46
+ };
47
+
48
+ // Sparse-Vector-Assignment kinds:
49
+ enum {
50
+ SVA_RuntimeSwitch,
51
+ SVA_Inner,
52
+ SVA_Outer
53
+ };
54
+
55
+ template< typename Dest, typename Src,
56
+ int AssignmentKind = !bool(Src::IsVectorAtCompileTime) ? SVA_RuntimeSwitch
57
+ : Src::InnerSizeAtCompileTime==1 ? SVA_Outer
58
+ : SVA_Inner>
59
+ struct sparse_vector_assign_selector;
60
+
61
+ }
62
+
63
+ template<typename _Scalar, int _Options, typename _StorageIndex>
64
+ class SparseVector
65
+ : public SparseCompressedBase<SparseVector<_Scalar, _Options, _StorageIndex> >
66
+ {
67
+ typedef SparseCompressedBase<SparseVector> Base;
68
+ using Base::convert_index;
69
+ public:
70
+ EIGEN_SPARSE_PUBLIC_INTERFACE(SparseVector)
71
+ EIGEN_SPARSE_INHERIT_ASSIGNMENT_OPERATOR(SparseVector, +=)
72
+ EIGEN_SPARSE_INHERIT_ASSIGNMENT_OPERATOR(SparseVector, -=)
73
+
74
+ typedef internal::CompressedStorage<Scalar,StorageIndex> Storage;
75
+ enum { IsColVector = internal::traits<SparseVector>::IsColVector };
76
+
77
+ enum {
78
+ Options = _Options
79
+ };
80
+
81
+ EIGEN_STRONG_INLINE Index rows() const { return IsColVector ? m_size : 1; }
82
+ EIGEN_STRONG_INLINE Index cols() const { return IsColVector ? 1 : m_size; }
83
+ EIGEN_STRONG_INLINE Index innerSize() const { return m_size; }
84
+ EIGEN_STRONG_INLINE Index outerSize() const { return 1; }
85
+
86
+ EIGEN_STRONG_INLINE const Scalar* valuePtr() const { return m_data.valuePtr(); }
87
+ EIGEN_STRONG_INLINE Scalar* valuePtr() { return m_data.valuePtr(); }
88
+
89
+ EIGEN_STRONG_INLINE const StorageIndex* innerIndexPtr() const { return m_data.indexPtr(); }
90
+ EIGEN_STRONG_INLINE StorageIndex* innerIndexPtr() { return m_data.indexPtr(); }
91
+
92
+ inline const StorageIndex* outerIndexPtr() const { return 0; }
93
+ inline StorageIndex* outerIndexPtr() { return 0; }
94
+ inline const StorageIndex* innerNonZeroPtr() const { return 0; }
95
+ inline StorageIndex* innerNonZeroPtr() { return 0; }
96
+
97
+ /** \internal */
98
+ inline Storage& data() { return m_data; }
99
+ /** \internal */
100
+ inline const Storage& data() const { return m_data; }
101
+
102
+ inline Scalar coeff(Index row, Index col) const
103
+ {
104
+ eigen_assert(IsColVector ? (col==0 && row>=0 && row<m_size) : (row==0 && col>=0 && col<m_size));
105
+ return coeff(IsColVector ? row : col);
106
+ }
107
+ inline Scalar coeff(Index i) const
108
+ {
109
+ eigen_assert(i>=0 && i<m_size);
110
+ return m_data.at(StorageIndex(i));
111
+ }
112
+
113
+ inline Scalar& coeffRef(Index row, Index col)
114
+ {
115
+ eigen_assert(IsColVector ? (col==0 && row>=0 && row<m_size) : (row==0 && col>=0 && col<m_size));
116
+ return coeffRef(IsColVector ? row : col);
117
+ }
118
+
119
+ /** \returns a reference to the coefficient value at given index \a i
120
+ * This operation involes a log(rho*size) binary search. If the coefficient does not
121
+ * exist yet, then a sorted insertion into a sequential buffer is performed.
122
+ *
123
+ * This insertion might be very costly if the number of nonzeros above \a i is large.
124
+ */
125
+ inline Scalar& coeffRef(Index i)
126
+ {
127
+ eigen_assert(i>=0 && i<m_size);
128
+
129
+ return m_data.atWithInsertion(StorageIndex(i));
130
+ }
131
+
132
+ public:
133
+
134
+ typedef typename Base::InnerIterator InnerIterator;
135
+ typedef typename Base::ReverseInnerIterator ReverseInnerIterator;
136
+
137
+ inline void setZero() { m_data.clear(); }
138
+
139
+ /** \returns the number of non zero coefficients */
140
+ inline Index nonZeros() const { return m_data.size(); }
141
+
142
+ inline void startVec(Index outer)
143
+ {
144
+ EIGEN_UNUSED_VARIABLE(outer);
145
+ eigen_assert(outer==0);
146
+ }
147
+
148
+ inline Scalar& insertBackByOuterInner(Index outer, Index inner)
149
+ {
150
+ EIGEN_UNUSED_VARIABLE(outer);
151
+ eigen_assert(outer==0);
152
+ return insertBack(inner);
153
+ }
154
+ inline Scalar& insertBack(Index i)
155
+ {
156
+ m_data.append(0, i);
157
+ return m_data.value(m_data.size()-1);
158
+ }
159
+
160
+ Scalar& insertBackByOuterInnerUnordered(Index outer, Index inner)
161
+ {
162
+ EIGEN_UNUSED_VARIABLE(outer);
163
+ eigen_assert(outer==0);
164
+ return insertBackUnordered(inner);
165
+ }
166
+ inline Scalar& insertBackUnordered(Index i)
167
+ {
168
+ m_data.append(0, i);
169
+ return m_data.value(m_data.size()-1);
170
+ }
171
+
172
+ inline Scalar& insert(Index row, Index col)
173
+ {
174
+ eigen_assert(IsColVector ? (col==0 && row>=0 && row<m_size) : (row==0 && col>=0 && col<m_size));
175
+
176
+ Index inner = IsColVector ? row : col;
177
+ Index outer = IsColVector ? col : row;
178
+ EIGEN_ONLY_USED_FOR_DEBUG(outer);
179
+ eigen_assert(outer==0);
180
+ return insert(inner);
181
+ }
182
+ Scalar& insert(Index i)
183
+ {
184
+ eigen_assert(i>=0 && i<m_size);
185
+
186
+ Index startId = 0;
187
+ Index p = Index(m_data.size()) - 1;
188
+ // TODO smart realloc
189
+ m_data.resize(p+2,1);
190
+
191
+ while ( (p >= startId) && (m_data.index(p) > i) )
192
+ {
193
+ m_data.index(p+1) = m_data.index(p);
194
+ m_data.value(p+1) = m_data.value(p);
195
+ --p;
196
+ }
197
+ m_data.index(p+1) = convert_index(i);
198
+ m_data.value(p+1) = 0;
199
+ return m_data.value(p+1);
200
+ }
201
+
202
+ /**
203
+ */
204
+ inline void reserve(Index reserveSize) { m_data.reserve(reserveSize); }
205
+
206
+
207
+ inline void finalize() {}
208
+
209
+ /** \copydoc SparseMatrix::prune(const Scalar&,const RealScalar&) */
210
+ void prune(const Scalar& reference, const RealScalar& epsilon = NumTraits<RealScalar>::dummy_precision())
211
+ {
212
+ m_data.prune(reference,epsilon);
213
+ }
214
+
215
+ /** Resizes the sparse vector to \a rows x \a cols
216
+ *
217
+ * This method is provided for compatibility with matrices.
218
+ * For a column vector, \a cols must be equal to 1.
219
+ * For a row vector, \a rows must be equal to 1.
220
+ *
221
+ * \sa resize(Index)
222
+ */
223
+ void resize(Index rows, Index cols)
224
+ {
225
+ eigen_assert((IsColVector ? cols : rows)==1 && "Outer dimension must equal 1");
226
+ resize(IsColVector ? rows : cols);
227
+ }
228
+
229
+ /** Resizes the sparse vector to \a newSize
230
+ * This method deletes all entries, thus leaving an empty sparse vector
231
+ *
232
+ * \sa conservativeResize(), setZero() */
233
+ void resize(Index newSize)
234
+ {
235
+ m_size = newSize;
236
+ m_data.clear();
237
+ }
238
+
239
+ /** Resizes the sparse vector to \a newSize, while leaving old values untouched.
240
+ *
241
+ * If the size of the vector is decreased, then the storage of the out-of bounds coefficients is kept and reserved.
242
+ * Call .data().squeeze() to free extra memory.
243
+ *
244
+ * \sa reserve(), setZero()
245
+ */
246
+ void conservativeResize(Index newSize)
247
+ {
248
+ if (newSize < m_size)
249
+ {
250
+ Index i = 0;
251
+ while (i<m_data.size() && m_data.index(i)<newSize) ++i;
252
+ m_data.resize(i);
253
+ }
254
+ m_size = newSize;
255
+ }
256
+
257
+ void resizeNonZeros(Index size) { m_data.resize(size); }
258
+
259
+ inline SparseVector() : m_size(0) { check_template_parameters(); resize(0); }
260
+
261
+ explicit inline SparseVector(Index size) : m_size(0) { check_template_parameters(); resize(size); }
262
+
263
+ inline SparseVector(Index rows, Index cols) : m_size(0) { check_template_parameters(); resize(rows,cols); }
264
+
265
+ template<typename OtherDerived>
266
+ inline SparseVector(const SparseMatrixBase<OtherDerived>& other)
267
+ : m_size(0)
268
+ {
269
+ #ifdef EIGEN_SPARSE_CREATE_TEMPORARY_PLUGIN
270
+ EIGEN_SPARSE_CREATE_TEMPORARY_PLUGIN
271
+ #endif
272
+ check_template_parameters();
273
+ *this = other.derived();
274
+ }
275
+
276
+ inline SparseVector(const SparseVector& other)
277
+ : Base(other), m_size(0)
278
+ {
279
+ check_template_parameters();
280
+ *this = other.derived();
281
+ }
282
+
283
+ /** Swaps the values of \c *this and \a other.
284
+ * Overloaded for performance: this version performs a \em shallow swap by swaping pointers and attributes only.
285
+ * \sa SparseMatrixBase::swap()
286
+ */
287
+ inline void swap(SparseVector& other)
288
+ {
289
+ std::swap(m_size, other.m_size);
290
+ m_data.swap(other.m_data);
291
+ }
292
+
293
+ template<int OtherOptions>
294
+ inline void swap(SparseMatrix<Scalar,OtherOptions,StorageIndex>& other)
295
+ {
296
+ eigen_assert(other.outerSize()==1);
297
+ std::swap(m_size, other.m_innerSize);
298
+ m_data.swap(other.m_data);
299
+ }
300
+
301
+ inline SparseVector& operator=(const SparseVector& other)
302
+ {
303
+ if (other.isRValue())
304
+ {
305
+ swap(other.const_cast_derived());
306
+ }
307
+ else
308
+ {
309
+ resize(other.size());
310
+ m_data = other.m_data;
311
+ }
312
+ return *this;
313
+ }
314
+
315
+ template<typename OtherDerived>
316
+ inline SparseVector& operator=(const SparseMatrixBase<OtherDerived>& other)
317
+ {
318
+ SparseVector tmp(other.size());
319
+ internal::sparse_vector_assign_selector<SparseVector,OtherDerived>::run(tmp,other.derived());
320
+ this->swap(tmp);
321
+ return *this;
322
+ }
323
+
324
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
325
+ template<typename Lhs, typename Rhs>
326
+ inline SparseVector& operator=(const SparseSparseProduct<Lhs,Rhs>& product)
327
+ {
328
+ return Base::operator=(product);
329
+ }
330
+ #endif
331
+
332
+ friend std::ostream & operator << (std::ostream & s, const SparseVector& m)
333
+ {
334
+ for (Index i=0; i<m.nonZeros(); ++i)
335
+ s << "(" << m.m_data.value(i) << "," << m.m_data.index(i) << ") ";
336
+ s << std::endl;
337
+ return s;
338
+ }
339
+
340
+ /** Destructor */
341
+ inline ~SparseVector() {}
342
+
343
+ /** Overloaded for performance */
344
+ Scalar sum() const;
345
+
346
+ public:
347
+
348
+ /** \internal \deprecated use setZero() and reserve() */
349
+ EIGEN_DEPRECATED void startFill(Index reserve)
350
+ {
351
+ setZero();
352
+ m_data.reserve(reserve);
353
+ }
354
+
355
+ /** \internal \deprecated use insertBack(Index,Index) */
356
+ EIGEN_DEPRECATED Scalar& fill(Index r, Index c)
357
+ {
358
+ eigen_assert(r==0 || c==0);
359
+ return fill(IsColVector ? r : c);
360
+ }
361
+
362
+ /** \internal \deprecated use insertBack(Index) */
363
+ EIGEN_DEPRECATED Scalar& fill(Index i)
364
+ {
365
+ m_data.append(0, i);
366
+ return m_data.value(m_data.size()-1);
367
+ }
368
+
369
+ /** \internal \deprecated use insert(Index,Index) */
370
+ EIGEN_DEPRECATED Scalar& fillrand(Index r, Index c)
371
+ {
372
+ eigen_assert(r==0 || c==0);
373
+ return fillrand(IsColVector ? r : c);
374
+ }
375
+
376
+ /** \internal \deprecated use insert(Index) */
377
+ EIGEN_DEPRECATED Scalar& fillrand(Index i)
378
+ {
379
+ return insert(i);
380
+ }
381
+
382
+ /** \internal \deprecated use finalize() */
383
+ EIGEN_DEPRECATED void endFill() {}
384
+
385
+ // These two functions were here in the 3.1 release, so let's keep them in case some code rely on them.
386
+ /** \internal \deprecated use data() */
387
+ EIGEN_DEPRECATED Storage& _data() { return m_data; }
388
+ /** \internal \deprecated use data() */
389
+ EIGEN_DEPRECATED const Storage& _data() const { return m_data; }
390
+
391
+ # ifdef EIGEN_SPARSEVECTOR_PLUGIN
392
+ # include EIGEN_SPARSEVECTOR_PLUGIN
393
+ # endif
394
+
395
+ protected:
396
+
397
+ static void check_template_parameters()
398
+ {
399
+ EIGEN_STATIC_ASSERT(NumTraits<StorageIndex>::IsSigned,THE_INDEX_TYPE_MUST_BE_A_SIGNED_TYPE);
400
+ EIGEN_STATIC_ASSERT((_Options&(ColMajor|RowMajor))==Options,INVALID_MATRIX_TEMPLATE_PARAMETERS);
401
+ }
402
+
403
+ Storage m_data;
404
+ Index m_size;
405
+ };
406
+
407
+ namespace internal {
408
+
409
+ template<typename _Scalar, int _Options, typename _Index>
410
+ struct evaluator<SparseVector<_Scalar,_Options,_Index> >
411
+ : evaluator_base<SparseVector<_Scalar,_Options,_Index> >
412
+ {
413
+ typedef SparseVector<_Scalar,_Options,_Index> SparseVectorType;
414
+ typedef evaluator_base<SparseVectorType> Base;
415
+ typedef typename SparseVectorType::InnerIterator InnerIterator;
416
+ typedef typename SparseVectorType::ReverseInnerIterator ReverseInnerIterator;
417
+
418
+ enum {
419
+ CoeffReadCost = NumTraits<_Scalar>::ReadCost,
420
+ Flags = SparseVectorType::Flags
421
+ };
422
+
423
+ evaluator() : Base() {}
424
+
425
+ explicit evaluator(const SparseVectorType &mat) : m_matrix(&mat)
426
+ {
427
+ EIGEN_INTERNAL_CHECK_COST_VALUE(CoeffReadCost);
428
+ }
429
+
430
+ inline Index nonZerosEstimate() const {
431
+ return m_matrix->nonZeros();
432
+ }
433
+
434
+ operator SparseVectorType&() { return m_matrix->const_cast_derived(); }
435
+ operator const SparseVectorType&() const { return *m_matrix; }
436
+
437
+ const SparseVectorType *m_matrix;
438
+ };
439
+
440
+ template< typename Dest, typename Src>
441
+ struct sparse_vector_assign_selector<Dest,Src,SVA_Inner> {
442
+ static void run(Dest& dst, const Src& src) {
443
+ eigen_internal_assert(src.innerSize()==src.size());
444
+ typedef internal::evaluator<Src> SrcEvaluatorType;
445
+ SrcEvaluatorType srcEval(src);
446
+ for(typename SrcEvaluatorType::InnerIterator it(srcEval, 0); it; ++it)
447
+ dst.insert(it.index()) = it.value();
448
+ }
449
+ };
450
+
451
+ template< typename Dest, typename Src>
452
+ struct sparse_vector_assign_selector<Dest,Src,SVA_Outer> {
453
+ static void run(Dest& dst, const Src& src) {
454
+ eigen_internal_assert(src.outerSize()==src.size());
455
+ typedef internal::evaluator<Src> SrcEvaluatorType;
456
+ SrcEvaluatorType srcEval(src);
457
+ for(Index i=0; i<src.size(); ++i)
458
+ {
459
+ typename SrcEvaluatorType::InnerIterator it(srcEval, i);
460
+ if(it)
461
+ dst.insert(i) = it.value();
462
+ }
463
+ }
464
+ };
465
+
466
+ template< typename Dest, typename Src>
467
+ struct sparse_vector_assign_selector<Dest,Src,SVA_RuntimeSwitch> {
468
+ static void run(Dest& dst, const Src& src) {
469
+ if(src.outerSize()==1) sparse_vector_assign_selector<Dest,Src,SVA_Inner>::run(dst, src);
470
+ else sparse_vector_assign_selector<Dest,Src,SVA_Outer>::run(dst, src);
471
+ }
472
+ };
473
+
474
+ }
475
+
476
+ } // end namespace Eigen
477
+
478
+ #endif // EIGEN_SPARSEVECTOR_H