tomoto 0.1.0

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Files changed (420) hide show
  1. checksums.yaml +7 -0
  2. data/CHANGELOG.md +3 -0
  3. data/LICENSE.txt +22 -0
  4. data/README.md +123 -0
  5. data/ext/tomoto/ext.cpp +245 -0
  6. data/ext/tomoto/extconf.rb +28 -0
  7. data/lib/tomoto.rb +12 -0
  8. data/lib/tomoto/ct.rb +11 -0
  9. data/lib/tomoto/hdp.rb +11 -0
  10. data/lib/tomoto/lda.rb +67 -0
  11. data/lib/tomoto/version.rb +3 -0
  12. data/vendor/EigenRand/EigenRand/Core.h +1139 -0
  13. data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
  14. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
  15. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
  16. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
  17. data/vendor/EigenRand/EigenRand/EigenRand +19 -0
  18. data/vendor/EigenRand/EigenRand/Macro.h +24 -0
  19. data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
  20. data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
  21. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
  22. data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
  23. data/vendor/EigenRand/EigenRand/doc.h +220 -0
  24. data/vendor/EigenRand/LICENSE +21 -0
  25. data/vendor/EigenRand/README.md +288 -0
  26. data/vendor/eigen/COPYING.BSD +26 -0
  27. data/vendor/eigen/COPYING.GPL +674 -0
  28. data/vendor/eigen/COPYING.LGPL +502 -0
  29. data/vendor/eigen/COPYING.MINPACK +52 -0
  30. data/vendor/eigen/COPYING.MPL2 +373 -0
  31. data/vendor/eigen/COPYING.README +18 -0
  32. data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
  33. data/vendor/eigen/Eigen/Cholesky +46 -0
  34. data/vendor/eigen/Eigen/CholmodSupport +48 -0
  35. data/vendor/eigen/Eigen/Core +537 -0
  36. data/vendor/eigen/Eigen/Dense +7 -0
  37. data/vendor/eigen/Eigen/Eigen +2 -0
  38. data/vendor/eigen/Eigen/Eigenvalues +61 -0
  39. data/vendor/eigen/Eigen/Geometry +62 -0
  40. data/vendor/eigen/Eigen/Householder +30 -0
  41. data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
  42. data/vendor/eigen/Eigen/Jacobi +33 -0
  43. data/vendor/eigen/Eigen/LU +50 -0
  44. data/vendor/eigen/Eigen/MetisSupport +35 -0
  45. data/vendor/eigen/Eigen/OrderingMethods +73 -0
  46. data/vendor/eigen/Eigen/PaStiXSupport +48 -0
  47. data/vendor/eigen/Eigen/PardisoSupport +35 -0
  48. data/vendor/eigen/Eigen/QR +51 -0
  49. data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
  50. data/vendor/eigen/Eigen/SPQRSupport +34 -0
  51. data/vendor/eigen/Eigen/SVD +51 -0
  52. data/vendor/eigen/Eigen/Sparse +36 -0
  53. data/vendor/eigen/Eigen/SparseCholesky +45 -0
  54. data/vendor/eigen/Eigen/SparseCore +69 -0
  55. data/vendor/eigen/Eigen/SparseLU +46 -0
  56. data/vendor/eigen/Eigen/SparseQR +37 -0
  57. data/vendor/eigen/Eigen/StdDeque +27 -0
  58. data/vendor/eigen/Eigen/StdList +26 -0
  59. data/vendor/eigen/Eigen/StdVector +27 -0
  60. data/vendor/eigen/Eigen/SuperLUSupport +64 -0
  61. data/vendor/eigen/Eigen/UmfPackSupport +40 -0
  62. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
  63. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
  64. data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  65. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
  66. data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
  67. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
  68. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
  69. data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
  70. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
  71. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
  72. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
  73. data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
  74. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
  75. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
  76. data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
  77. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
  78. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
  79. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
  80. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
  81. data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  82. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
  84. data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
  85. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
  86. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
  87. data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
  88. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
  89. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
  90. data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
  91. data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
  92. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  93. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
  94. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
  95. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
  96. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
  97. data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
  98. data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
  99. data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
  100. data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
  101. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
  102. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
  103. data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
  104. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
  105. data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
  106. data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
  107. data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
  108. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
  109. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
  110. data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
  111. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
  112. data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
  113. data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
  114. data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
  115. data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
  116. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
  117. data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
  118. data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
  119. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
  120. data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  121. data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
  122. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
  123. data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
  124. data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
  125. data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
  126. data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
  127. data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
  128. data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
  129. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
  130. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
  131. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
  132. data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
  133. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
  134. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
  135. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
  136. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
  137. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
  138. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
  139. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
  140. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
  141. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
  142. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
  143. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
  145. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
  146. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
  148. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
  149. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
  153. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
  154. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
  156. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
  160. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
  161. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
  162. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
  163. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
  164. data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  165. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
  166. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
  167. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
  168. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
  169. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  170. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
  171. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
  172. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  173. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
  174. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
  175. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
  176. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
  177. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  178. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  179. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  180. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
  181. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
  182. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  183. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  184. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
  185. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
  186. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
  187. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
  188. data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
  189. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
  190. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  191. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
  192. data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
  193. data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
  194. data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
  195. data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
  196. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
  197. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
  198. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
  199. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  200. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
  201. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  202. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  203. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  204. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  205. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  206. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  207. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
  208. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
  209. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  210. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
  211. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  212. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
  213. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
  214. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
  215. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
  216. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
  217. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
  218. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
  219. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  220. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
  221. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
  222. data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
  223. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
  224. data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
  225. data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
  226. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
  227. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
  228. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
  229. data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
  230. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
  231. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  232. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
  233. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
  234. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
  235. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
  236. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
  237. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
  238. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
  239. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
  240. data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
  241. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
  242. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
  243. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
  244. data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  245. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
  246. data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  247. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
  248. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
  249. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
  250. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  251. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
  252. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
  253. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  254. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
  255. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
  256. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
  257. data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  258. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
  259. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
  260. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
  261. data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  262. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
  263. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  264. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
  265. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  266. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
  267. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
  268. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  269. data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  270. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
  271. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
  272. data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  273. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
  274. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
  275. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
  276. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
  277. data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  278. data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
  279. data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  280. data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
  281. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
  282. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
  283. data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  284. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
  285. data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
  295. data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  296. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
  297. data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  298. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  299. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  300. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  307. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  308. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  309. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  310. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  311. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  312. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  313. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
  314. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +126 -0
  315. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
  316. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
  317. data/vendor/eigen/Eigen/src/StlSupport/details.h +84 -0
  318. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
  319. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
  320. data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
  321. data/vendor/eigen/Eigen/src/misc/Kernel.h +79 -0
  322. data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
  323. data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
  324. data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
  325. data/vendor/eigen/Eigen/src/misc/lapacke.h +16291 -0
  326. data/vendor/eigen/Eigen/src/misc/lapacke_mangling.h +17 -0
  327. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +332 -0
  328. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
  329. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
  330. data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  331. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +163 -0
  332. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  333. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
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  340. data/vendor/eigen/demos/mandelbrot/README +10 -0
  341. data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
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  343. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
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  346. data/vendor/tomotopy/README.kr.rst +375 -0
  347. data/vendor/tomotopy/README.rst +382 -0
  348. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
  349. data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
  350. data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
  351. data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
  352. data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
  353. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
  354. data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
  355. data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
  356. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
  357. data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
  358. data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
  359. data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
  360. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
  361. data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
  362. data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
  363. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
  364. data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
  365. data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
  366. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
  367. data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
  368. data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
  369. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
  370. data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
  371. data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
  372. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
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  374. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
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  376. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
  377. data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
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  379. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
  380. data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
  381. data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
  382. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
  383. data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
  384. data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
  385. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
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  388. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
  389. data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
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  392. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
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  394. data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
  395. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
  396. data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
  397. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
  398. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
  399. data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
  400. data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
  401. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
  402. data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
  403. data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
  404. data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
  405. data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
  406. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
  407. data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
  408. data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
  409. data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
  410. data/vendor/tomotopy/src/Utils/exception.h +28 -0
  411. data/vendor/tomotopy/src/Utils/math.h +281 -0
  412. data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
  413. data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
  414. data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
  415. data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
  416. data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
  417. data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
  418. data/vendor/tomotopy/src/Utils/text.hpp +49 -0
  419. data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
  420. metadata +531 -0
@@ -0,0 +1,115 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2014 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_SOLVEWITHGUESS_H
11
+ #define EIGEN_SOLVEWITHGUESS_H
12
+
13
+ namespace Eigen {
14
+
15
+ template<typename Decomposition, typename RhsType, typename GuessType> class SolveWithGuess;
16
+
17
+ /** \class SolveWithGuess
18
+ * \ingroup IterativeLinearSolvers_Module
19
+ *
20
+ * \brief Pseudo expression representing a solving operation
21
+ *
22
+ * \tparam Decomposition the type of the matrix or decomposion object
23
+ * \tparam Rhstype the type of the right-hand side
24
+ *
25
+ * This class represents an expression of A.solve(B)
26
+ * and most of the time this is the only way it is used.
27
+ *
28
+ */
29
+ namespace internal {
30
+
31
+
32
+ template<typename Decomposition, typename RhsType, typename GuessType>
33
+ struct traits<SolveWithGuess<Decomposition, RhsType, GuessType> >
34
+ : traits<Solve<Decomposition,RhsType> >
35
+ {};
36
+
37
+ }
38
+
39
+
40
+ template<typename Decomposition, typename RhsType, typename GuessType>
41
+ class SolveWithGuess : public internal::generic_xpr_base<SolveWithGuess<Decomposition,RhsType,GuessType>, MatrixXpr, typename internal::traits<RhsType>::StorageKind>::type
42
+ {
43
+ public:
44
+ typedef typename internal::traits<SolveWithGuess>::Scalar Scalar;
45
+ typedef typename internal::traits<SolveWithGuess>::PlainObject PlainObject;
46
+ typedef typename internal::generic_xpr_base<SolveWithGuess<Decomposition,RhsType,GuessType>, MatrixXpr, typename internal::traits<RhsType>::StorageKind>::type Base;
47
+ typedef typename internal::ref_selector<SolveWithGuess>::type Nested;
48
+
49
+ SolveWithGuess(const Decomposition &dec, const RhsType &rhs, const GuessType &guess)
50
+ : m_dec(dec), m_rhs(rhs), m_guess(guess)
51
+ {}
52
+
53
+ EIGEN_DEVICE_FUNC Index rows() const { return m_dec.cols(); }
54
+ EIGEN_DEVICE_FUNC Index cols() const { return m_rhs.cols(); }
55
+
56
+ EIGEN_DEVICE_FUNC const Decomposition& dec() const { return m_dec; }
57
+ EIGEN_DEVICE_FUNC const RhsType& rhs() const { return m_rhs; }
58
+ EIGEN_DEVICE_FUNC const GuessType& guess() const { return m_guess; }
59
+
60
+ protected:
61
+ const Decomposition &m_dec;
62
+ const RhsType &m_rhs;
63
+ const GuessType &m_guess;
64
+
65
+ private:
66
+ Scalar coeff(Index row, Index col) const;
67
+ Scalar coeff(Index i) const;
68
+ };
69
+
70
+ namespace internal {
71
+
72
+ // Evaluator of SolveWithGuess -> eval into a temporary
73
+ template<typename Decomposition, typename RhsType, typename GuessType>
74
+ struct evaluator<SolveWithGuess<Decomposition,RhsType, GuessType> >
75
+ : public evaluator<typename SolveWithGuess<Decomposition,RhsType,GuessType>::PlainObject>
76
+ {
77
+ typedef SolveWithGuess<Decomposition,RhsType,GuessType> SolveType;
78
+ typedef typename SolveType::PlainObject PlainObject;
79
+ typedef evaluator<PlainObject> Base;
80
+
81
+ evaluator(const SolveType& solve)
82
+ : m_result(solve.rows(), solve.cols())
83
+ {
84
+ ::new (static_cast<Base*>(this)) Base(m_result);
85
+ m_result = solve.guess();
86
+ solve.dec()._solve_with_guess_impl(solve.rhs(), m_result);
87
+ }
88
+
89
+ protected:
90
+ PlainObject m_result;
91
+ };
92
+
93
+ // Specialization for "dst = dec.solveWithGuess(rhs)"
94
+ // NOTE we need to specialize it for Dense2Dense to avoid ambiguous specialization error and a Sparse2Sparse specialization must exist somewhere
95
+ template<typename DstXprType, typename DecType, typename RhsType, typename GuessType, typename Scalar>
96
+ struct Assignment<DstXprType, SolveWithGuess<DecType,RhsType,GuessType>, internal::assign_op<Scalar,Scalar>, Dense2Dense>
97
+ {
98
+ typedef SolveWithGuess<DecType,RhsType,GuessType> SrcXprType;
99
+ static void run(DstXprType &dst, const SrcXprType &src, const internal::assign_op<Scalar,Scalar> &)
100
+ {
101
+ Index dstRows = src.rows();
102
+ Index dstCols = src.cols();
103
+ if((dst.rows()!=dstRows) || (dst.cols()!=dstCols))
104
+ dst.resize(dstRows, dstCols);
105
+
106
+ dst = src.guess();
107
+ src.dec()._solve_with_guess_impl(src.rhs(), dst/*, src.guess()*/);
108
+ }
109
+ };
110
+
111
+ } // end namepsace internal
112
+
113
+ } // end namespace Eigen
114
+
115
+ #endif // EIGEN_SOLVEWITHGUESS_H
@@ -0,0 +1,462 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2009 Benoit Jacob <jacob.benoit.1@gmail.com>
5
+ // Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_JACOBI_H
12
+ #define EIGEN_JACOBI_H
13
+
14
+ namespace Eigen {
15
+
16
+ /** \ingroup Jacobi_Module
17
+ * \jacobi_module
18
+ * \class JacobiRotation
19
+ * \brief Rotation given by a cosine-sine pair.
20
+ *
21
+ * This class represents a Jacobi or Givens rotation.
22
+ * This is a 2D rotation in the plane \c J of angle \f$ \theta \f$ defined by
23
+ * its cosine \c c and sine \c s as follow:
24
+ * \f$ J = \left ( \begin{array}{cc} c & \overline s \\ -s & \overline c \end{array} \right ) \f$
25
+ *
26
+ * You can apply the respective counter-clockwise rotation to a column vector \c v by
27
+ * applying its adjoint on the left: \f$ v = J^* v \f$ that translates to the following Eigen code:
28
+ * \code
29
+ * v.applyOnTheLeft(J.adjoint());
30
+ * \endcode
31
+ *
32
+ * \sa MatrixBase::applyOnTheLeft(), MatrixBase::applyOnTheRight()
33
+ */
34
+ template<typename Scalar> class JacobiRotation
35
+ {
36
+ public:
37
+ typedef typename NumTraits<Scalar>::Real RealScalar;
38
+
39
+ /** Default constructor without any initialization. */
40
+ JacobiRotation() {}
41
+
42
+ /** Construct a planar rotation from a cosine-sine pair (\a c, \c s). */
43
+ JacobiRotation(const Scalar& c, const Scalar& s) : m_c(c), m_s(s) {}
44
+
45
+ Scalar& c() { return m_c; }
46
+ Scalar c() const { return m_c; }
47
+ Scalar& s() { return m_s; }
48
+ Scalar s() const { return m_s; }
49
+
50
+ /** Concatenates two planar rotation */
51
+ JacobiRotation operator*(const JacobiRotation& other)
52
+ {
53
+ using numext::conj;
54
+ return JacobiRotation(m_c * other.m_c - conj(m_s) * other.m_s,
55
+ conj(m_c * conj(other.m_s) + conj(m_s) * conj(other.m_c)));
56
+ }
57
+
58
+ /** Returns the transposed transformation */
59
+ JacobiRotation transpose() const { using numext::conj; return JacobiRotation(m_c, -conj(m_s)); }
60
+
61
+ /** Returns the adjoint transformation */
62
+ JacobiRotation adjoint() const { using numext::conj; return JacobiRotation(conj(m_c), -m_s); }
63
+
64
+ template<typename Derived>
65
+ bool makeJacobi(const MatrixBase<Derived>&, Index p, Index q);
66
+ bool makeJacobi(const RealScalar& x, const Scalar& y, const RealScalar& z);
67
+
68
+ void makeGivens(const Scalar& p, const Scalar& q, Scalar* r=0);
69
+
70
+ protected:
71
+ void makeGivens(const Scalar& p, const Scalar& q, Scalar* r, internal::true_type);
72
+ void makeGivens(const Scalar& p, const Scalar& q, Scalar* r, internal::false_type);
73
+
74
+ Scalar m_c, m_s;
75
+ };
76
+
77
+ /** Makes \c *this as a Jacobi rotation \a J such that applying \a J on both the right and left sides of the selfadjoint 2x2 matrix
78
+ * \f$ B = \left ( \begin{array}{cc} x & y \\ \overline y & z \end{array} \right )\f$ yields a diagonal matrix \f$ A = J^* B J \f$
79
+ *
80
+ * \sa MatrixBase::makeJacobi(const MatrixBase<Derived>&, Index, Index), MatrixBase::applyOnTheLeft(), MatrixBase::applyOnTheRight()
81
+ */
82
+ template<typename Scalar>
83
+ bool JacobiRotation<Scalar>::makeJacobi(const RealScalar& x, const Scalar& y, const RealScalar& z)
84
+ {
85
+ using std::sqrt;
86
+ using std::abs;
87
+ RealScalar deno = RealScalar(2)*abs(y);
88
+ if(deno < (std::numeric_limits<RealScalar>::min)())
89
+ {
90
+ m_c = Scalar(1);
91
+ m_s = Scalar(0);
92
+ return false;
93
+ }
94
+ else
95
+ {
96
+ RealScalar tau = (x-z)/deno;
97
+ RealScalar w = sqrt(numext::abs2(tau) + RealScalar(1));
98
+ RealScalar t;
99
+ if(tau>RealScalar(0))
100
+ {
101
+ t = RealScalar(1) / (tau + w);
102
+ }
103
+ else
104
+ {
105
+ t = RealScalar(1) / (tau - w);
106
+ }
107
+ RealScalar sign_t = t > RealScalar(0) ? RealScalar(1) : RealScalar(-1);
108
+ RealScalar n = RealScalar(1) / sqrt(numext::abs2(t)+RealScalar(1));
109
+ m_s = - sign_t * (numext::conj(y) / abs(y)) * abs(t) * n;
110
+ m_c = n;
111
+ return true;
112
+ }
113
+ }
114
+
115
+ /** Makes \c *this as a Jacobi rotation \c J such that applying \a J on both the right and left sides of the 2x2 selfadjoint matrix
116
+ * \f$ B = \left ( \begin{array}{cc} \text{this}_{pp} & \text{this}_{pq} \\ (\text{this}_{pq})^* & \text{this}_{qq} \end{array} \right )\f$ yields
117
+ * a diagonal matrix \f$ A = J^* B J \f$
118
+ *
119
+ * Example: \include Jacobi_makeJacobi.cpp
120
+ * Output: \verbinclude Jacobi_makeJacobi.out
121
+ *
122
+ * \sa JacobiRotation::makeJacobi(RealScalar, Scalar, RealScalar), MatrixBase::applyOnTheLeft(), MatrixBase::applyOnTheRight()
123
+ */
124
+ template<typename Scalar>
125
+ template<typename Derived>
126
+ inline bool JacobiRotation<Scalar>::makeJacobi(const MatrixBase<Derived>& m, Index p, Index q)
127
+ {
128
+ return makeJacobi(numext::real(m.coeff(p,p)), m.coeff(p,q), numext::real(m.coeff(q,q)));
129
+ }
130
+
131
+ /** Makes \c *this as a Givens rotation \c G such that applying \f$ G^* \f$ to the left of the vector
132
+ * \f$ V = \left ( \begin{array}{c} p \\ q \end{array} \right )\f$ yields:
133
+ * \f$ G^* V = \left ( \begin{array}{c} r \\ 0 \end{array} \right )\f$.
134
+ *
135
+ * The value of \a r is returned if \a r is not null (the default is null).
136
+ * Also note that G is built such that the cosine is always real.
137
+ *
138
+ * Example: \include Jacobi_makeGivens.cpp
139
+ * Output: \verbinclude Jacobi_makeGivens.out
140
+ *
141
+ * This function implements the continuous Givens rotation generation algorithm
142
+ * found in Anderson (2000), Discontinuous Plane Rotations and the Symmetric Eigenvalue Problem.
143
+ * LAPACK Working Note 150, University of Tennessee, UT-CS-00-454, December 4, 2000.
144
+ *
145
+ * \sa MatrixBase::applyOnTheLeft(), MatrixBase::applyOnTheRight()
146
+ */
147
+ template<typename Scalar>
148
+ void JacobiRotation<Scalar>::makeGivens(const Scalar& p, const Scalar& q, Scalar* r)
149
+ {
150
+ makeGivens(p, q, r, typename internal::conditional<NumTraits<Scalar>::IsComplex, internal::true_type, internal::false_type>::type());
151
+ }
152
+
153
+
154
+ // specialization for complexes
155
+ template<typename Scalar>
156
+ void JacobiRotation<Scalar>::makeGivens(const Scalar& p, const Scalar& q, Scalar* r, internal::true_type)
157
+ {
158
+ using std::sqrt;
159
+ using std::abs;
160
+ using numext::conj;
161
+
162
+ if(q==Scalar(0))
163
+ {
164
+ m_c = numext::real(p)<0 ? Scalar(-1) : Scalar(1);
165
+ m_s = 0;
166
+ if(r) *r = m_c * p;
167
+ }
168
+ else if(p==Scalar(0))
169
+ {
170
+ m_c = 0;
171
+ m_s = -q/abs(q);
172
+ if(r) *r = abs(q);
173
+ }
174
+ else
175
+ {
176
+ RealScalar p1 = numext::norm1(p);
177
+ RealScalar q1 = numext::norm1(q);
178
+ if(p1>=q1)
179
+ {
180
+ Scalar ps = p / p1;
181
+ RealScalar p2 = numext::abs2(ps);
182
+ Scalar qs = q / p1;
183
+ RealScalar q2 = numext::abs2(qs);
184
+
185
+ RealScalar u = sqrt(RealScalar(1) + q2/p2);
186
+ if(numext::real(p)<RealScalar(0))
187
+ u = -u;
188
+
189
+ m_c = Scalar(1)/u;
190
+ m_s = -qs*conj(ps)*(m_c/p2);
191
+ if(r) *r = p * u;
192
+ }
193
+ else
194
+ {
195
+ Scalar ps = p / q1;
196
+ RealScalar p2 = numext::abs2(ps);
197
+ Scalar qs = q / q1;
198
+ RealScalar q2 = numext::abs2(qs);
199
+
200
+ RealScalar u = q1 * sqrt(p2 + q2);
201
+ if(numext::real(p)<RealScalar(0))
202
+ u = -u;
203
+
204
+ p1 = abs(p);
205
+ ps = p/p1;
206
+ m_c = p1/u;
207
+ m_s = -conj(ps) * (q/u);
208
+ if(r) *r = ps * u;
209
+ }
210
+ }
211
+ }
212
+
213
+ // specialization for reals
214
+ template<typename Scalar>
215
+ void JacobiRotation<Scalar>::makeGivens(const Scalar& p, const Scalar& q, Scalar* r, internal::false_type)
216
+ {
217
+ using std::sqrt;
218
+ using std::abs;
219
+ if(q==Scalar(0))
220
+ {
221
+ m_c = p<Scalar(0) ? Scalar(-1) : Scalar(1);
222
+ m_s = Scalar(0);
223
+ if(r) *r = abs(p);
224
+ }
225
+ else if(p==Scalar(0))
226
+ {
227
+ m_c = Scalar(0);
228
+ m_s = q<Scalar(0) ? Scalar(1) : Scalar(-1);
229
+ if(r) *r = abs(q);
230
+ }
231
+ else if(abs(p) > abs(q))
232
+ {
233
+ Scalar t = q/p;
234
+ Scalar u = sqrt(Scalar(1) + numext::abs2(t));
235
+ if(p<Scalar(0))
236
+ u = -u;
237
+ m_c = Scalar(1)/u;
238
+ m_s = -t * m_c;
239
+ if(r) *r = p * u;
240
+ }
241
+ else
242
+ {
243
+ Scalar t = p/q;
244
+ Scalar u = sqrt(Scalar(1) + numext::abs2(t));
245
+ if(q<Scalar(0))
246
+ u = -u;
247
+ m_s = -Scalar(1)/u;
248
+ m_c = -t * m_s;
249
+ if(r) *r = q * u;
250
+ }
251
+
252
+ }
253
+
254
+ /****************************************************************************************
255
+ * Implementation of MatrixBase methods
256
+ ****************************************************************************************/
257
+
258
+ namespace internal {
259
+ /** \jacobi_module
260
+ * Applies the clock wise 2D rotation \a j to the set of 2D vectors of cordinates \a x and \a y:
261
+ * \f$ \left ( \begin{array}{cc} x \\ y \end{array} \right ) = J \left ( \begin{array}{cc} x \\ y \end{array} \right ) \f$
262
+ *
263
+ * \sa MatrixBase::applyOnTheLeft(), MatrixBase::applyOnTheRight()
264
+ */
265
+ template<typename VectorX, typename VectorY, typename OtherScalar>
266
+ void apply_rotation_in_the_plane(DenseBase<VectorX>& xpr_x, DenseBase<VectorY>& xpr_y, const JacobiRotation<OtherScalar>& j);
267
+ }
268
+
269
+ /** \jacobi_module
270
+ * Applies the rotation in the plane \a j to the rows \a p and \a q of \c *this, i.e., it computes B = J * B,
271
+ * with \f$ B = \left ( \begin{array}{cc} \text{*this.row}(p) \\ \text{*this.row}(q) \end{array} \right ) \f$.
272
+ *
273
+ * \sa class JacobiRotation, MatrixBase::applyOnTheRight(), internal::apply_rotation_in_the_plane()
274
+ */
275
+ template<typename Derived>
276
+ template<typename OtherScalar>
277
+ inline void MatrixBase<Derived>::applyOnTheLeft(Index p, Index q, const JacobiRotation<OtherScalar>& j)
278
+ {
279
+ RowXpr x(this->row(p));
280
+ RowXpr y(this->row(q));
281
+ internal::apply_rotation_in_the_plane(x, y, j);
282
+ }
283
+
284
+ /** \ingroup Jacobi_Module
285
+ * Applies the rotation in the plane \a j to the columns \a p and \a q of \c *this, i.e., it computes B = B * J
286
+ * with \f$ B = \left ( \begin{array}{cc} \text{*this.col}(p) & \text{*this.col}(q) \end{array} \right ) \f$.
287
+ *
288
+ * \sa class JacobiRotation, MatrixBase::applyOnTheLeft(), internal::apply_rotation_in_the_plane()
289
+ */
290
+ template<typename Derived>
291
+ template<typename OtherScalar>
292
+ inline void MatrixBase<Derived>::applyOnTheRight(Index p, Index q, const JacobiRotation<OtherScalar>& j)
293
+ {
294
+ ColXpr x(this->col(p));
295
+ ColXpr y(this->col(q));
296
+ internal::apply_rotation_in_the_plane(x, y, j.transpose());
297
+ }
298
+
299
+ namespace internal {
300
+
301
+ template<typename Scalar, typename OtherScalar,
302
+ int SizeAtCompileTime, int MinAlignment, bool Vectorizable>
303
+ struct apply_rotation_in_the_plane_selector
304
+ {
305
+ static inline void run(Scalar *x, Index incrx, Scalar *y, Index incry, Index size, OtherScalar c, OtherScalar s)
306
+ {
307
+ for(Index i=0; i<size; ++i)
308
+ {
309
+ Scalar xi = *x;
310
+ Scalar yi = *y;
311
+ *x = c * xi + numext::conj(s) * yi;
312
+ *y = -s * xi + numext::conj(c) * yi;
313
+ x += incrx;
314
+ y += incry;
315
+ }
316
+ }
317
+ };
318
+
319
+ template<typename Scalar, typename OtherScalar,
320
+ int SizeAtCompileTime, int MinAlignment>
321
+ struct apply_rotation_in_the_plane_selector<Scalar,OtherScalar,SizeAtCompileTime,MinAlignment,true /* vectorizable */>
322
+ {
323
+ static inline void run(Scalar *x, Index incrx, Scalar *y, Index incry, Index size, OtherScalar c, OtherScalar s)
324
+ {
325
+ enum {
326
+ PacketSize = packet_traits<Scalar>::size,
327
+ OtherPacketSize = packet_traits<OtherScalar>::size
328
+ };
329
+ typedef typename packet_traits<Scalar>::type Packet;
330
+ typedef typename packet_traits<OtherScalar>::type OtherPacket;
331
+
332
+ /*** dynamic-size vectorized paths ***/
333
+ if(SizeAtCompileTime == Dynamic && ((incrx==1 && incry==1) || PacketSize == 1))
334
+ {
335
+ // both vectors are sequentially stored in memory => vectorization
336
+ enum { Peeling = 2 };
337
+
338
+ Index alignedStart = internal::first_default_aligned(y, size);
339
+ Index alignedEnd = alignedStart + ((size-alignedStart)/PacketSize)*PacketSize;
340
+
341
+ const OtherPacket pc = pset1<OtherPacket>(c);
342
+ const OtherPacket ps = pset1<OtherPacket>(s);
343
+ conj_helper<OtherPacket,Packet,NumTraits<OtherScalar>::IsComplex,false> pcj;
344
+ conj_helper<OtherPacket,Packet,false,false> pm;
345
+
346
+ for(Index i=0; i<alignedStart; ++i)
347
+ {
348
+ Scalar xi = x[i];
349
+ Scalar yi = y[i];
350
+ x[i] = c * xi + numext::conj(s) * yi;
351
+ y[i] = -s * xi + numext::conj(c) * yi;
352
+ }
353
+
354
+ Scalar* EIGEN_RESTRICT px = x + alignedStart;
355
+ Scalar* EIGEN_RESTRICT py = y + alignedStart;
356
+
357
+ if(internal::first_default_aligned(x, size)==alignedStart)
358
+ {
359
+ for(Index i=alignedStart; i<alignedEnd; i+=PacketSize)
360
+ {
361
+ Packet xi = pload<Packet>(px);
362
+ Packet yi = pload<Packet>(py);
363
+ pstore(px, padd(pm.pmul(pc,xi),pcj.pmul(ps,yi)));
364
+ pstore(py, psub(pcj.pmul(pc,yi),pm.pmul(ps,xi)));
365
+ px += PacketSize;
366
+ py += PacketSize;
367
+ }
368
+ }
369
+ else
370
+ {
371
+ Index peelingEnd = alignedStart + ((size-alignedStart)/(Peeling*PacketSize))*(Peeling*PacketSize);
372
+ for(Index i=alignedStart; i<peelingEnd; i+=Peeling*PacketSize)
373
+ {
374
+ Packet xi = ploadu<Packet>(px);
375
+ Packet xi1 = ploadu<Packet>(px+PacketSize);
376
+ Packet yi = pload <Packet>(py);
377
+ Packet yi1 = pload <Packet>(py+PacketSize);
378
+ pstoreu(px, padd(pm.pmul(pc,xi),pcj.pmul(ps,yi)));
379
+ pstoreu(px+PacketSize, padd(pm.pmul(pc,xi1),pcj.pmul(ps,yi1)));
380
+ pstore (py, psub(pcj.pmul(pc,yi),pm.pmul(ps,xi)));
381
+ pstore (py+PacketSize, psub(pcj.pmul(pc,yi1),pm.pmul(ps,xi1)));
382
+ px += Peeling*PacketSize;
383
+ py += Peeling*PacketSize;
384
+ }
385
+ if(alignedEnd!=peelingEnd)
386
+ {
387
+ Packet xi = ploadu<Packet>(x+peelingEnd);
388
+ Packet yi = pload <Packet>(y+peelingEnd);
389
+ pstoreu(x+peelingEnd, padd(pm.pmul(pc,xi),pcj.pmul(ps,yi)));
390
+ pstore (y+peelingEnd, psub(pcj.pmul(pc,yi),pm.pmul(ps,xi)));
391
+ }
392
+ }
393
+
394
+ for(Index i=alignedEnd; i<size; ++i)
395
+ {
396
+ Scalar xi = x[i];
397
+ Scalar yi = y[i];
398
+ x[i] = c * xi + numext::conj(s) * yi;
399
+ y[i] = -s * xi + numext::conj(c) * yi;
400
+ }
401
+ }
402
+
403
+ /*** fixed-size vectorized path ***/
404
+ else if(SizeAtCompileTime != Dynamic && MinAlignment>0) // FIXME should be compared to the required alignment
405
+ {
406
+ const OtherPacket pc = pset1<OtherPacket>(c);
407
+ const OtherPacket ps = pset1<OtherPacket>(s);
408
+ conj_helper<OtherPacket,Packet,NumTraits<OtherPacket>::IsComplex,false> pcj;
409
+ conj_helper<OtherPacket,Packet,false,false> pm;
410
+ Scalar* EIGEN_RESTRICT px = x;
411
+ Scalar* EIGEN_RESTRICT py = y;
412
+ for(Index i=0; i<size; i+=PacketSize)
413
+ {
414
+ Packet xi = pload<Packet>(px);
415
+ Packet yi = pload<Packet>(py);
416
+ pstore(px, padd(pm.pmul(pc,xi),pcj.pmul(ps,yi)));
417
+ pstore(py, psub(pcj.pmul(pc,yi),pm.pmul(ps,xi)));
418
+ px += PacketSize;
419
+ py += PacketSize;
420
+ }
421
+ }
422
+
423
+ /*** non-vectorized path ***/
424
+ else
425
+ {
426
+ apply_rotation_in_the_plane_selector<Scalar,OtherScalar,SizeAtCompileTime,MinAlignment,false>::run(x,incrx,y,incry,size,c,s);
427
+ }
428
+ }
429
+ };
430
+
431
+ template<typename VectorX, typename VectorY, typename OtherScalar>
432
+ void /*EIGEN_DONT_INLINE*/ apply_rotation_in_the_plane(DenseBase<VectorX>& xpr_x, DenseBase<VectorY>& xpr_y, const JacobiRotation<OtherScalar>& j)
433
+ {
434
+ typedef typename VectorX::Scalar Scalar;
435
+ const bool Vectorizable = (VectorX::Flags & VectorY::Flags & PacketAccessBit)
436
+ && (int(packet_traits<Scalar>::size) == int(packet_traits<OtherScalar>::size));
437
+
438
+ eigen_assert(xpr_x.size() == xpr_y.size());
439
+ Index size = xpr_x.size();
440
+ Index incrx = xpr_x.derived().innerStride();
441
+ Index incry = xpr_y.derived().innerStride();
442
+
443
+ Scalar* EIGEN_RESTRICT x = &xpr_x.derived().coeffRef(0);
444
+ Scalar* EIGEN_RESTRICT y = &xpr_y.derived().coeffRef(0);
445
+
446
+ OtherScalar c = j.c();
447
+ OtherScalar s = j.s();
448
+ if (c==OtherScalar(1) && s==OtherScalar(0))
449
+ return;
450
+
451
+ apply_rotation_in_the_plane_selector<
452
+ Scalar,OtherScalar,
453
+ VectorX::SizeAtCompileTime,
454
+ EIGEN_PLAIN_ENUM_MIN(evaluator<VectorX>::Alignment, evaluator<VectorY>::Alignment),
455
+ Vectorizable>::run(x,incrx,y,incry,size,c,s);
456
+ }
457
+
458
+ } // end namespace internal
459
+
460
+ } // end namespace Eigen
461
+
462
+ #endif // EIGEN_JACOBI_H