tomoto 0.1.0
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- checksums.yaml +7 -0
- data/CHANGELOG.md +3 -0
- data/LICENSE.txt +22 -0
- data/README.md +123 -0
- data/ext/tomoto/ext.cpp +245 -0
- data/ext/tomoto/extconf.rb +28 -0
- data/lib/tomoto.rb +12 -0
- data/lib/tomoto/ct.rb +11 -0
- data/lib/tomoto/hdp.rb +11 -0
- data/lib/tomoto/lda.rb +67 -0
- data/lib/tomoto/version.rb +3 -0
- data/vendor/EigenRand/EigenRand/Core.h +1139 -0
- data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
- data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
- data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
- data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
- data/vendor/EigenRand/EigenRand/EigenRand +19 -0
- data/vendor/EigenRand/EigenRand/Macro.h +24 -0
- data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
- data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
- data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
- data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
- data/vendor/EigenRand/EigenRand/doc.h +220 -0
- data/vendor/EigenRand/LICENSE +21 -0
- data/vendor/EigenRand/README.md +288 -0
- data/vendor/eigen/COPYING.BSD +26 -0
- data/vendor/eigen/COPYING.GPL +674 -0
- data/vendor/eigen/COPYING.LGPL +502 -0
- data/vendor/eigen/COPYING.MINPACK +52 -0
- data/vendor/eigen/COPYING.MPL2 +373 -0
- data/vendor/eigen/COPYING.README +18 -0
- data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
- data/vendor/eigen/Eigen/Cholesky +46 -0
- data/vendor/eigen/Eigen/CholmodSupport +48 -0
- data/vendor/eigen/Eigen/Core +537 -0
- data/vendor/eigen/Eigen/Dense +7 -0
- data/vendor/eigen/Eigen/Eigen +2 -0
- data/vendor/eigen/Eigen/Eigenvalues +61 -0
- data/vendor/eigen/Eigen/Geometry +62 -0
- data/vendor/eigen/Eigen/Householder +30 -0
- data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
- data/vendor/eigen/Eigen/Jacobi +33 -0
- data/vendor/eigen/Eigen/LU +50 -0
- data/vendor/eigen/Eigen/MetisSupport +35 -0
- data/vendor/eigen/Eigen/OrderingMethods +73 -0
- data/vendor/eigen/Eigen/PaStiXSupport +48 -0
- data/vendor/eigen/Eigen/PardisoSupport +35 -0
- data/vendor/eigen/Eigen/QR +51 -0
- data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
- data/vendor/eigen/Eigen/SPQRSupport +34 -0
- data/vendor/eigen/Eigen/SVD +51 -0
- data/vendor/eigen/Eigen/Sparse +36 -0
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- data/vendor/eigen/Eigen/SparseCore +69 -0
- data/vendor/eigen/Eigen/SparseLU +46 -0
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- data/vendor/eigen/Eigen/SuperLUSupport +64 -0
- data/vendor/eigen/Eigen/UmfPackSupport +40 -0
- data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
- data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
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- data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
- data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
- data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
- data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
- data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
- data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
- data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
- data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
- data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
- data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
- data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
- data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
- data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
- data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
- data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
- data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
- data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
- data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
- data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
- data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
- data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
- data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
- data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
- data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
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- data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
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- data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
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- data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
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- data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
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- data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
- data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
- data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
- data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
- data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
- data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
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- data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
- data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
- data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
- data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
- data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
- data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
- data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
- data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
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- data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
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- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
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- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
- data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
- data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +126 -0
- data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
- data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
- data/vendor/eigen/Eigen/src/StlSupport/details.h +84 -0
- data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
- data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
- data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
- data/vendor/eigen/Eigen/src/misc/Kernel.h +79 -0
- data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
- data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
- data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
- data/vendor/eigen/Eigen/src/misc/lapacke.h +16291 -0
- data/vendor/eigen/Eigen/src/misc/lapacke_mangling.h +17 -0
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +332 -0
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
- data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
- data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
- data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +163 -0
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
- data/vendor/eigen/README.md +3 -0
- data/vendor/eigen/bench/README.txt +55 -0
- data/vendor/eigen/bench/btl/COPYING +340 -0
- data/vendor/eigen/bench/btl/README +154 -0
- data/vendor/eigen/bench/tensors/README +21 -0
- data/vendor/eigen/blas/README.txt +6 -0
- data/vendor/eigen/demos/mandelbrot/README +10 -0
- data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
- data/vendor/eigen/demos/opengl/README +13 -0
- data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
- data/vendor/eigen/unsupported/README.txt +50 -0
- data/vendor/tomotopy/LICENSE +21 -0
- data/vendor/tomotopy/README.kr.rst +375 -0
- data/vendor/tomotopy/README.rst +382 -0
- data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
- data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
- data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
- data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
- data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
- data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
- data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
- data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
- data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
- data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
- data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
- data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
- data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
- data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
- data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
- data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
- data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
- data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
- data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
- data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
- data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
- data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
- data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
- data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
- data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
- data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
- data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
- data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
- data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
- data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
- data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
- data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
- data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
- data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
- data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
- data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
- data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
- data/vendor/tomotopy/src/Utils/AliasMethod.hpp +169 -0
- data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
- data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
- data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
- data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
- data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
- data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
- data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
- data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
- data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
- data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
- data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
- data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
- data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
- data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
- data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
- data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
- data/vendor/tomotopy/src/Utils/exception.h +28 -0
- data/vendor/tomotopy/src/Utils/math.h +281 -0
- data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
- data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
- data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
- data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
- data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
- data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
- data/vendor/tomotopy/src/Utils/text.hpp +49 -0
- data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
- metadata +531 -0
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// This file is part of Eigen, a lightweight C++ template library
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// for linear algebra.
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//
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// Copyright (C) 2008-2009 Gael Guennebaud <gael.guennebaud@inria.fr>
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//
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// This Source Code Form is subject to the terms of the Mozilla
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// Public License v. 2.0. If a copy of the MPL was not distributed
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// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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#ifndef EIGEN_GENERAL_MATRIX_MATRIX_H
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#define EIGEN_GENERAL_MATRIX_MATRIX_H
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namespace Eigen {
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namespace internal {
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template<typename _LhsScalar, typename _RhsScalar> class level3_blocking;
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/* Specialization for a row-major destination matrix => simple transposition of the product */
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template<
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typename Index,
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typename LhsScalar, int LhsStorageOrder, bool ConjugateLhs,
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typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs>
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struct general_matrix_matrix_product<Index,LhsScalar,LhsStorageOrder,ConjugateLhs,RhsScalar,RhsStorageOrder,ConjugateRhs,RowMajor>
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{
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typedef gebp_traits<RhsScalar,LhsScalar> Traits;
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typedef typename ScalarBinaryOpTraits<LhsScalar, RhsScalar>::ReturnType ResScalar;
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static EIGEN_STRONG_INLINE void run(
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Index rows, Index cols, Index depth,
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const LhsScalar* lhs, Index lhsStride,
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const RhsScalar* rhs, Index rhsStride,
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ResScalar* res, Index resStride,
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ResScalar alpha,
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level3_blocking<RhsScalar,LhsScalar>& blocking,
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GemmParallelInfo<Index>* info = 0)
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{
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// transpose the product such that the result is column major
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general_matrix_matrix_product<Index,
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RhsScalar, RhsStorageOrder==RowMajor ? ColMajor : RowMajor, ConjugateRhs,
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LhsScalar, LhsStorageOrder==RowMajor ? ColMajor : RowMajor, ConjugateLhs,
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ColMajor>
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::run(cols,rows,depth,rhs,rhsStride,lhs,lhsStride,res,resStride,alpha,blocking,info);
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}
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};
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/* Specialization for a col-major destination matrix
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* => Blocking algorithm following Goto's paper */
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template<
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typename Index,
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typename LhsScalar, int LhsStorageOrder, bool ConjugateLhs,
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typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs>
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struct general_matrix_matrix_product<Index,LhsScalar,LhsStorageOrder,ConjugateLhs,RhsScalar,RhsStorageOrder,ConjugateRhs,ColMajor>
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{
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typedef gebp_traits<LhsScalar,RhsScalar> Traits;
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typedef typename ScalarBinaryOpTraits<LhsScalar, RhsScalar>::ReturnType ResScalar;
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static void run(Index rows, Index cols, Index depth,
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const LhsScalar* _lhs, Index lhsStride,
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const RhsScalar* _rhs, Index rhsStride,
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ResScalar* _res, Index resStride,
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ResScalar alpha,
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level3_blocking<LhsScalar,RhsScalar>& blocking,
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GemmParallelInfo<Index>* info = 0)
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{
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typedef const_blas_data_mapper<LhsScalar, Index, LhsStorageOrder> LhsMapper;
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typedef const_blas_data_mapper<RhsScalar, Index, RhsStorageOrder> RhsMapper;
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typedef blas_data_mapper<typename Traits::ResScalar, Index, ColMajor> ResMapper;
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LhsMapper lhs(_lhs,lhsStride);
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RhsMapper rhs(_rhs,rhsStride);
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ResMapper res(_res, resStride);
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Index kc = blocking.kc(); // cache block size along the K direction
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Index mc = (std::min)(rows,blocking.mc()); // cache block size along the M direction
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Index nc = (std::min)(cols,blocking.nc()); // cache block size along the N direction
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gemm_pack_lhs<LhsScalar, Index, LhsMapper, Traits::mr, Traits::LhsProgress, LhsStorageOrder> pack_lhs;
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gemm_pack_rhs<RhsScalar, Index, RhsMapper, Traits::nr, RhsStorageOrder> pack_rhs;
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gebp_kernel<LhsScalar, RhsScalar, Index, ResMapper, Traits::mr, Traits::nr, ConjugateLhs, ConjugateRhs> gebp;
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#ifdef EIGEN_HAS_OPENMP
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if(info)
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{
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// this is the parallel version!
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int tid = omp_get_thread_num();
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int threads = omp_get_num_threads();
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LhsScalar* blockA = blocking.blockA();
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eigen_internal_assert(blockA!=0);
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std::size_t sizeB = kc*nc;
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ei_declare_aligned_stack_constructed_variable(RhsScalar, blockB, sizeB, 0);
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// For each horizontal panel of the rhs, and corresponding vertical panel of the lhs...
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for(Index k=0; k<depth; k+=kc)
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{
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const Index actual_kc = (std::min)(k+kc,depth)-k; // => rows of B', and cols of the A'
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// In order to reduce the chance that a thread has to wait for the other,
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// let's start by packing B'.
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pack_rhs(blockB, rhs.getSubMapper(k,0), actual_kc, nc);
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// Pack A_k to A' in a parallel fashion:
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// each thread packs the sub block A_k,i to A'_i where i is the thread id.
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// However, before copying to A'_i, we have to make sure that no other thread is still using it,
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// i.e., we test that info[tid].users equals 0.
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// Then, we set info[tid].users to the number of threads to mark that all other threads are going to use it.
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while(info[tid].users!=0) {}
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info[tid].users += threads;
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pack_lhs(blockA+info[tid].lhs_start*actual_kc, lhs.getSubMapper(info[tid].lhs_start,k), actual_kc, info[tid].lhs_length);
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// Notify the other threads that the part A'_i is ready to go.
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info[tid].sync = k;
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// Computes C_i += A' * B' per A'_i
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for(int shift=0; shift<threads; ++shift)
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{
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int i = (tid+shift)%threads;
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// At this point we have to make sure that A'_i has been updated by the thread i,
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// we use testAndSetOrdered to mimic a volatile access.
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// However, no need to wait for the B' part which has been updated by the current thread!
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if (shift>0) {
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while(info[i].sync!=k) {
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}
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}
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gebp(res.getSubMapper(info[i].lhs_start, 0), blockA+info[i].lhs_start*actual_kc, blockB, info[i].lhs_length, actual_kc, nc, alpha);
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}
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// Then keep going as usual with the remaining B'
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for(Index j=nc; j<cols; j+=nc)
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{
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const Index actual_nc = (std::min)(j+nc,cols)-j;
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// pack B_k,j to B'
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pack_rhs(blockB, rhs.getSubMapper(k,j), actual_kc, actual_nc);
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// C_j += A' * B'
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gebp(res.getSubMapper(0, j), blockA, blockB, rows, actual_kc, actual_nc, alpha);
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}
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// Release all the sub blocks A'_i of A' for the current thread,
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// i.e., we simply decrement the number of users by 1
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for(Index i=0; i<threads; ++i)
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#pragma omp atomic
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info[i].users -= 1;
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}
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}
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else
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#endif // EIGEN_HAS_OPENMP
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{
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EIGEN_UNUSED_VARIABLE(info);
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// this is the sequential version!
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std::size_t sizeA = kc*mc;
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std::size_t sizeB = kc*nc;
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ei_declare_aligned_stack_constructed_variable(LhsScalar, blockA, sizeA, blocking.blockA());
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ei_declare_aligned_stack_constructed_variable(RhsScalar, blockB, sizeB, blocking.blockB());
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const bool pack_rhs_once = mc!=rows && kc==depth && nc==cols;
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// For each horizontal panel of the rhs, and corresponding panel of the lhs...
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for(Index i2=0; i2<rows; i2+=mc)
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{
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const Index actual_mc = (std::min)(i2+mc,rows)-i2;
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for(Index k2=0; k2<depth; k2+=kc)
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{
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const Index actual_kc = (std::min)(k2+kc,depth)-k2;
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// OK, here we have selected one horizontal panel of rhs and one vertical panel of lhs.
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// => Pack lhs's panel into a sequential chunk of memory (L2/L3 caching)
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// Note that this panel will be read as many times as the number of blocks in the rhs's
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// horizontal panel which is, in practice, a very low number.
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pack_lhs(blockA, lhs.getSubMapper(i2,k2), actual_kc, actual_mc);
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// For each kc x nc block of the rhs's horizontal panel...
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for(Index j2=0; j2<cols; j2+=nc)
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{
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const Index actual_nc = (std::min)(j2+nc,cols)-j2;
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// We pack the rhs's block into a sequential chunk of memory (L2 caching)
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// Note that this block will be read a very high number of times, which is equal to the number of
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// micro horizontal panel of the large rhs's panel (e.g., rows/12 times).
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if((!pack_rhs_once) || i2==0)
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pack_rhs(blockB, rhs.getSubMapper(k2,j2), actual_kc, actual_nc);
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// Everything is packed, we can now call the panel * block kernel:
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gebp(res.getSubMapper(i2, j2), blockA, blockB, actual_mc, actual_kc, actual_nc, alpha);
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}
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}
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}
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}
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}
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};
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/*********************************************************************************
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* Specialization of generic_product_impl for "large" GEMM, i.e.,
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* implementation of the high level wrapper to general_matrix_matrix_product
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**********************************************************************************/
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template<typename Scalar, typename Index, typename Gemm, typename Lhs, typename Rhs, typename Dest, typename BlockingType>
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struct gemm_functor
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{
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gemm_functor(const Lhs& lhs, const Rhs& rhs, Dest& dest, const Scalar& actualAlpha, BlockingType& blocking)
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: m_lhs(lhs), m_rhs(rhs), m_dest(dest), m_actualAlpha(actualAlpha), m_blocking(blocking)
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{}
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void initParallelSession(Index num_threads) const
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{
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m_blocking.initParallel(m_lhs.rows(), m_rhs.cols(), m_lhs.cols(), num_threads);
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m_blocking.allocateA();
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}
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+
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void operator() (Index row, Index rows, Index col=0, Index cols=-1, GemmParallelInfo<Index>* info=0) const
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{
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if(cols==-1)
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cols = m_rhs.cols();
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+
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Gemm::run(rows, cols, m_lhs.cols(),
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&m_lhs.coeffRef(row,0), m_lhs.outerStride(),
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&m_rhs.coeffRef(0,col), m_rhs.outerStride(),
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(Scalar*)&(m_dest.coeffRef(row,col)), m_dest.outerStride(),
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m_actualAlpha, m_blocking, info);
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}
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typedef typename Gemm::Traits Traits;
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protected:
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const Lhs& m_lhs;
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const Rhs& m_rhs;
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Dest& m_dest;
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Scalar m_actualAlpha;
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BlockingType& m_blocking;
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};
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+
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template<int StorageOrder, typename LhsScalar, typename RhsScalar, int MaxRows, int MaxCols, int MaxDepth, int KcFactor=1,
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bool FiniteAtCompileTime = MaxRows!=Dynamic && MaxCols!=Dynamic && MaxDepth != Dynamic> class gemm_blocking_space;
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+
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246
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+
template<typename _LhsScalar, typename _RhsScalar>
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class level3_blocking
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{
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typedef _LhsScalar LhsScalar;
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typedef _RhsScalar RhsScalar;
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+
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protected:
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LhsScalar* m_blockA;
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+
RhsScalar* m_blockB;
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+
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Index m_mc;
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+
Index m_nc;
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+
Index m_kc;
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+
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public:
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+
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level3_blocking()
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: m_blockA(0), m_blockB(0), m_mc(0), m_nc(0), m_kc(0)
|
264
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+
{}
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265
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+
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inline Index mc() const { return m_mc; }
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inline Index nc() const { return m_nc; }
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inline Index kc() const { return m_kc; }
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+
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270
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+
inline LhsScalar* blockA() { return m_blockA; }
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+
inline RhsScalar* blockB() { return m_blockB; }
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+
};
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+
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+
template<int StorageOrder, typename _LhsScalar, typename _RhsScalar, int MaxRows, int MaxCols, int MaxDepth, int KcFactor>
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275
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+
class gemm_blocking_space<StorageOrder,_LhsScalar,_RhsScalar,MaxRows, MaxCols, MaxDepth, KcFactor, true /* == FiniteAtCompileTime */>
|
276
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: public level3_blocking<
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+
typename conditional<StorageOrder==RowMajor,_RhsScalar,_LhsScalar>::type,
|
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+
typename conditional<StorageOrder==RowMajor,_LhsScalar,_RhsScalar>::type>
|
279
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+
{
|
280
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+
enum {
|
281
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+
Transpose = StorageOrder==RowMajor,
|
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+
ActualRows = Transpose ? MaxCols : MaxRows,
|
283
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+
ActualCols = Transpose ? MaxRows : MaxCols
|
284
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+
};
|
285
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+
typedef typename conditional<Transpose,_RhsScalar,_LhsScalar>::type LhsScalar;
|
286
|
+
typedef typename conditional<Transpose,_LhsScalar,_RhsScalar>::type RhsScalar;
|
287
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+
typedef gebp_traits<LhsScalar,RhsScalar> Traits;
|
288
|
+
enum {
|
289
|
+
SizeA = ActualRows * MaxDepth,
|
290
|
+
SizeB = ActualCols * MaxDepth
|
291
|
+
};
|
292
|
+
|
293
|
+
#if EIGEN_MAX_STATIC_ALIGN_BYTES >= EIGEN_DEFAULT_ALIGN_BYTES
|
294
|
+
EIGEN_ALIGN_MAX LhsScalar m_staticA[SizeA];
|
295
|
+
EIGEN_ALIGN_MAX RhsScalar m_staticB[SizeB];
|
296
|
+
#else
|
297
|
+
EIGEN_ALIGN_MAX char m_staticA[SizeA * sizeof(LhsScalar) + EIGEN_DEFAULT_ALIGN_BYTES-1];
|
298
|
+
EIGEN_ALIGN_MAX char m_staticB[SizeB * sizeof(RhsScalar) + EIGEN_DEFAULT_ALIGN_BYTES-1];
|
299
|
+
#endif
|
300
|
+
|
301
|
+
public:
|
302
|
+
|
303
|
+
gemm_blocking_space(Index /*rows*/, Index /*cols*/, Index /*depth*/, Index /*num_threads*/, bool /*full_rows = false*/)
|
304
|
+
{
|
305
|
+
this->m_mc = ActualRows;
|
306
|
+
this->m_nc = ActualCols;
|
307
|
+
this->m_kc = MaxDepth;
|
308
|
+
#if EIGEN_MAX_STATIC_ALIGN_BYTES >= EIGEN_DEFAULT_ALIGN_BYTES
|
309
|
+
this->m_blockA = m_staticA;
|
310
|
+
this->m_blockB = m_staticB;
|
311
|
+
#else
|
312
|
+
this->m_blockA = reinterpret_cast<LhsScalar*>((internal::UIntPtr(m_staticA) + (EIGEN_DEFAULT_ALIGN_BYTES-1)) & ~std::size_t(EIGEN_DEFAULT_ALIGN_BYTES-1));
|
313
|
+
this->m_blockB = reinterpret_cast<RhsScalar*>((internal::UIntPtr(m_staticB) + (EIGEN_DEFAULT_ALIGN_BYTES-1)) & ~std::size_t(EIGEN_DEFAULT_ALIGN_BYTES-1));
|
314
|
+
#endif
|
315
|
+
}
|
316
|
+
|
317
|
+
void initParallel(Index, Index, Index, Index)
|
318
|
+
{}
|
319
|
+
|
320
|
+
inline void allocateA() {}
|
321
|
+
inline void allocateB() {}
|
322
|
+
inline void allocateAll() {}
|
323
|
+
};
|
324
|
+
|
325
|
+
template<int StorageOrder, typename _LhsScalar, typename _RhsScalar, int MaxRows, int MaxCols, int MaxDepth, int KcFactor>
|
326
|
+
class gemm_blocking_space<StorageOrder,_LhsScalar,_RhsScalar,MaxRows, MaxCols, MaxDepth, KcFactor, false>
|
327
|
+
: public level3_blocking<
|
328
|
+
typename conditional<StorageOrder==RowMajor,_RhsScalar,_LhsScalar>::type,
|
329
|
+
typename conditional<StorageOrder==RowMajor,_LhsScalar,_RhsScalar>::type>
|
330
|
+
{
|
331
|
+
enum {
|
332
|
+
Transpose = StorageOrder==RowMajor
|
333
|
+
};
|
334
|
+
typedef typename conditional<Transpose,_RhsScalar,_LhsScalar>::type LhsScalar;
|
335
|
+
typedef typename conditional<Transpose,_LhsScalar,_RhsScalar>::type RhsScalar;
|
336
|
+
typedef gebp_traits<LhsScalar,RhsScalar> Traits;
|
337
|
+
|
338
|
+
Index m_sizeA;
|
339
|
+
Index m_sizeB;
|
340
|
+
|
341
|
+
public:
|
342
|
+
|
343
|
+
gemm_blocking_space(Index rows, Index cols, Index depth, Index num_threads, bool l3_blocking)
|
344
|
+
{
|
345
|
+
this->m_mc = Transpose ? cols : rows;
|
346
|
+
this->m_nc = Transpose ? rows : cols;
|
347
|
+
this->m_kc = depth;
|
348
|
+
|
349
|
+
if(l3_blocking)
|
350
|
+
{
|
351
|
+
computeProductBlockingSizes<LhsScalar,RhsScalar,KcFactor>(this->m_kc, this->m_mc, this->m_nc, num_threads);
|
352
|
+
}
|
353
|
+
else // no l3 blocking
|
354
|
+
{
|
355
|
+
Index n = this->m_nc;
|
356
|
+
computeProductBlockingSizes<LhsScalar,RhsScalar,KcFactor>(this->m_kc, this->m_mc, n, num_threads);
|
357
|
+
}
|
358
|
+
|
359
|
+
m_sizeA = this->m_mc * this->m_kc;
|
360
|
+
m_sizeB = this->m_kc * this->m_nc;
|
361
|
+
}
|
362
|
+
|
363
|
+
void initParallel(Index rows, Index cols, Index depth, Index num_threads)
|
364
|
+
{
|
365
|
+
this->m_mc = Transpose ? cols : rows;
|
366
|
+
this->m_nc = Transpose ? rows : cols;
|
367
|
+
this->m_kc = depth;
|
368
|
+
|
369
|
+
eigen_internal_assert(this->m_blockA==0 && this->m_blockB==0);
|
370
|
+
Index m = this->m_mc;
|
371
|
+
computeProductBlockingSizes<LhsScalar,RhsScalar,KcFactor>(this->m_kc, m, this->m_nc, num_threads);
|
372
|
+
m_sizeA = this->m_mc * this->m_kc;
|
373
|
+
m_sizeB = this->m_kc * this->m_nc;
|
374
|
+
}
|
375
|
+
|
376
|
+
void allocateA()
|
377
|
+
{
|
378
|
+
if(this->m_blockA==0)
|
379
|
+
this->m_blockA = aligned_new<LhsScalar>(m_sizeA);
|
380
|
+
}
|
381
|
+
|
382
|
+
void allocateB()
|
383
|
+
{
|
384
|
+
if(this->m_blockB==0)
|
385
|
+
this->m_blockB = aligned_new<RhsScalar>(m_sizeB);
|
386
|
+
}
|
387
|
+
|
388
|
+
void allocateAll()
|
389
|
+
{
|
390
|
+
allocateA();
|
391
|
+
allocateB();
|
392
|
+
}
|
393
|
+
|
394
|
+
~gemm_blocking_space()
|
395
|
+
{
|
396
|
+
aligned_delete(this->m_blockA, m_sizeA);
|
397
|
+
aligned_delete(this->m_blockB, m_sizeB);
|
398
|
+
}
|
399
|
+
};
|
400
|
+
|
401
|
+
} // end namespace internal
|
402
|
+
|
403
|
+
namespace internal {
|
404
|
+
|
405
|
+
template<typename Lhs, typename Rhs>
|
406
|
+
struct generic_product_impl<Lhs,Rhs,DenseShape,DenseShape,GemmProduct>
|
407
|
+
: generic_product_impl_base<Lhs,Rhs,generic_product_impl<Lhs,Rhs,DenseShape,DenseShape,GemmProduct> >
|
408
|
+
{
|
409
|
+
typedef typename Product<Lhs,Rhs>::Scalar Scalar;
|
410
|
+
typedef typename Lhs::Scalar LhsScalar;
|
411
|
+
typedef typename Rhs::Scalar RhsScalar;
|
412
|
+
|
413
|
+
typedef internal::blas_traits<Lhs> LhsBlasTraits;
|
414
|
+
typedef typename LhsBlasTraits::DirectLinearAccessType ActualLhsType;
|
415
|
+
typedef typename internal::remove_all<ActualLhsType>::type ActualLhsTypeCleaned;
|
416
|
+
|
417
|
+
typedef internal::blas_traits<Rhs> RhsBlasTraits;
|
418
|
+
typedef typename RhsBlasTraits::DirectLinearAccessType ActualRhsType;
|
419
|
+
typedef typename internal::remove_all<ActualRhsType>::type ActualRhsTypeCleaned;
|
420
|
+
|
421
|
+
enum {
|
422
|
+
MaxDepthAtCompileTime = EIGEN_SIZE_MIN_PREFER_FIXED(Lhs::MaxColsAtCompileTime,Rhs::MaxRowsAtCompileTime)
|
423
|
+
};
|
424
|
+
|
425
|
+
typedef generic_product_impl<Lhs,Rhs,DenseShape,DenseShape,CoeffBasedProductMode> lazyproduct;
|
426
|
+
|
427
|
+
template<typename Dst>
|
428
|
+
static void evalTo(Dst& dst, const Lhs& lhs, const Rhs& rhs)
|
429
|
+
{
|
430
|
+
if((rhs.rows()+dst.rows()+dst.cols())<20 && rhs.rows()>0)
|
431
|
+
lazyproduct::evalTo(dst, lhs, rhs);
|
432
|
+
else
|
433
|
+
{
|
434
|
+
dst.setZero();
|
435
|
+
scaleAndAddTo(dst, lhs, rhs, Scalar(1));
|
436
|
+
}
|
437
|
+
}
|
438
|
+
|
439
|
+
template<typename Dst>
|
440
|
+
static void addTo(Dst& dst, const Lhs& lhs, const Rhs& rhs)
|
441
|
+
{
|
442
|
+
if((rhs.rows()+dst.rows()+dst.cols())<20 && rhs.rows()>0)
|
443
|
+
lazyproduct::addTo(dst, lhs, rhs);
|
444
|
+
else
|
445
|
+
scaleAndAddTo(dst,lhs, rhs, Scalar(1));
|
446
|
+
}
|
447
|
+
|
448
|
+
template<typename Dst>
|
449
|
+
static void subTo(Dst& dst, const Lhs& lhs, const Rhs& rhs)
|
450
|
+
{
|
451
|
+
if((rhs.rows()+dst.rows()+dst.cols())<20 && rhs.rows()>0)
|
452
|
+
lazyproduct::subTo(dst, lhs, rhs);
|
453
|
+
else
|
454
|
+
scaleAndAddTo(dst, lhs, rhs, Scalar(-1));
|
455
|
+
}
|
456
|
+
|
457
|
+
template<typename Dest>
|
458
|
+
static void scaleAndAddTo(Dest& dst, const Lhs& a_lhs, const Rhs& a_rhs, const Scalar& alpha)
|
459
|
+
{
|
460
|
+
eigen_assert(dst.rows()==a_lhs.rows() && dst.cols()==a_rhs.cols());
|
461
|
+
if(a_lhs.cols()==0 || a_lhs.rows()==0 || a_rhs.cols()==0)
|
462
|
+
return;
|
463
|
+
|
464
|
+
typename internal::add_const_on_value_type<ActualLhsType>::type lhs = LhsBlasTraits::extract(a_lhs);
|
465
|
+
typename internal::add_const_on_value_type<ActualRhsType>::type rhs = RhsBlasTraits::extract(a_rhs);
|
466
|
+
|
467
|
+
Scalar actualAlpha = alpha * LhsBlasTraits::extractScalarFactor(a_lhs)
|
468
|
+
* RhsBlasTraits::extractScalarFactor(a_rhs);
|
469
|
+
|
470
|
+
typedef internal::gemm_blocking_space<(Dest::Flags&RowMajorBit) ? RowMajor : ColMajor,LhsScalar,RhsScalar,
|
471
|
+
Dest::MaxRowsAtCompileTime,Dest::MaxColsAtCompileTime,MaxDepthAtCompileTime> BlockingType;
|
472
|
+
|
473
|
+
typedef internal::gemm_functor<
|
474
|
+
Scalar, Index,
|
475
|
+
internal::general_matrix_matrix_product<
|
476
|
+
Index,
|
477
|
+
LhsScalar, (ActualLhsTypeCleaned::Flags&RowMajorBit) ? RowMajor : ColMajor, bool(LhsBlasTraits::NeedToConjugate),
|
478
|
+
RhsScalar, (ActualRhsTypeCleaned::Flags&RowMajorBit) ? RowMajor : ColMajor, bool(RhsBlasTraits::NeedToConjugate),
|
479
|
+
(Dest::Flags&RowMajorBit) ? RowMajor : ColMajor>,
|
480
|
+
ActualLhsTypeCleaned, ActualRhsTypeCleaned, Dest, BlockingType> GemmFunctor;
|
481
|
+
|
482
|
+
BlockingType blocking(dst.rows(), dst.cols(), lhs.cols(), 1, true);
|
483
|
+
internal::parallelize_gemm<(Dest::MaxRowsAtCompileTime>32 || Dest::MaxRowsAtCompileTime==Dynamic)>
|
484
|
+
(GemmFunctor(lhs, rhs, dst, actualAlpha, blocking), a_lhs.rows(), a_rhs.cols(), a_lhs.cols(), Dest::Flags&RowMajorBit);
|
485
|
+
}
|
486
|
+
};
|
487
|
+
|
488
|
+
} // end namespace internal
|
489
|
+
|
490
|
+
} // end namespace Eigen
|
491
|
+
|
492
|
+
#endif // EIGEN_GENERAL_MATRIX_MATRIX_H
|