tomoto 0.1.0

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Files changed (420) hide show
  1. checksums.yaml +7 -0
  2. data/CHANGELOG.md +3 -0
  3. data/LICENSE.txt +22 -0
  4. data/README.md +123 -0
  5. data/ext/tomoto/ext.cpp +245 -0
  6. data/ext/tomoto/extconf.rb +28 -0
  7. data/lib/tomoto.rb +12 -0
  8. data/lib/tomoto/ct.rb +11 -0
  9. data/lib/tomoto/hdp.rb +11 -0
  10. data/lib/tomoto/lda.rb +67 -0
  11. data/lib/tomoto/version.rb +3 -0
  12. data/vendor/EigenRand/EigenRand/Core.h +1139 -0
  13. data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
  14. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
  15. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
  16. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
  17. data/vendor/EigenRand/EigenRand/EigenRand +19 -0
  18. data/vendor/EigenRand/EigenRand/Macro.h +24 -0
  19. data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
  20. data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
  21. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
  22. data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
  23. data/vendor/EigenRand/EigenRand/doc.h +220 -0
  24. data/vendor/EigenRand/LICENSE +21 -0
  25. data/vendor/EigenRand/README.md +288 -0
  26. data/vendor/eigen/COPYING.BSD +26 -0
  27. data/vendor/eigen/COPYING.GPL +674 -0
  28. data/vendor/eigen/COPYING.LGPL +502 -0
  29. data/vendor/eigen/COPYING.MINPACK +52 -0
  30. data/vendor/eigen/COPYING.MPL2 +373 -0
  31. data/vendor/eigen/COPYING.README +18 -0
  32. data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
  33. data/vendor/eigen/Eigen/Cholesky +46 -0
  34. data/vendor/eigen/Eigen/CholmodSupport +48 -0
  35. data/vendor/eigen/Eigen/Core +537 -0
  36. data/vendor/eigen/Eigen/Dense +7 -0
  37. data/vendor/eigen/Eigen/Eigen +2 -0
  38. data/vendor/eigen/Eigen/Eigenvalues +61 -0
  39. data/vendor/eigen/Eigen/Geometry +62 -0
  40. data/vendor/eigen/Eigen/Householder +30 -0
  41. data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
  42. data/vendor/eigen/Eigen/Jacobi +33 -0
  43. data/vendor/eigen/Eigen/LU +50 -0
  44. data/vendor/eigen/Eigen/MetisSupport +35 -0
  45. data/vendor/eigen/Eigen/OrderingMethods +73 -0
  46. data/vendor/eigen/Eigen/PaStiXSupport +48 -0
  47. data/vendor/eigen/Eigen/PardisoSupport +35 -0
  48. data/vendor/eigen/Eigen/QR +51 -0
  49. data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
  50. data/vendor/eigen/Eigen/SPQRSupport +34 -0
  51. data/vendor/eigen/Eigen/SVD +51 -0
  52. data/vendor/eigen/Eigen/Sparse +36 -0
  53. data/vendor/eigen/Eigen/SparseCholesky +45 -0
  54. data/vendor/eigen/Eigen/SparseCore +69 -0
  55. data/vendor/eigen/Eigen/SparseLU +46 -0
  56. data/vendor/eigen/Eigen/SparseQR +37 -0
  57. data/vendor/eigen/Eigen/StdDeque +27 -0
  58. data/vendor/eigen/Eigen/StdList +26 -0
  59. data/vendor/eigen/Eigen/StdVector +27 -0
  60. data/vendor/eigen/Eigen/SuperLUSupport +64 -0
  61. data/vendor/eigen/Eigen/UmfPackSupport +40 -0
  62. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
  63. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
  64. data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  65. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
  66. data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
  67. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
  68. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
  69. data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
  70. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
  71. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
  72. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
  73. data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
  74. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
  75. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
  76. data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
  77. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
  78. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
  79. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
  80. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
  81. data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  82. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
  84. data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
  85. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
  86. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
  87. data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
  88. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
  89. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
  90. data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
  91. data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
  92. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  93. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
  94. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
  95. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
  96. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
  97. data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
  98. data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
  99. data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
  100. data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
  101. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
  102. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
  103. data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
  104. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
  105. data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
  106. data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
  107. data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
  108. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
  109. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
  110. data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
  111. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
  112. data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
  113. data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
  114. data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
  115. data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
  116. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
  117. data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
  118. data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
  119. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
  120. data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  121. data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
  122. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
  123. data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
  124. data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
  125. data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
  126. data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
  127. data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
  128. data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
  129. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
  130. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
  131. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
  132. data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
  133. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
  134. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
  135. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
  136. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
  137. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
  138. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
  139. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
  140. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
  141. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
  142. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
  143. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
  145. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
  146. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
  148. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
  149. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
  153. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
  154. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
  156. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
  160. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
  161. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
  162. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
  163. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
  164. data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  165. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
  166. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
  167. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
  168. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
  169. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  170. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
  171. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
  172. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  173. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
  174. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
  175. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
  176. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
  177. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  178. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  179. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  180. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
  181. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
  182. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  183. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  184. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
  185. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
  186. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
  187. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
  188. data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
  189. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
  190. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  191. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
  192. data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
  193. data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
  194. data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
  195. data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
  196. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
  197. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
  198. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
  199. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  200. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
  201. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  202. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  203. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  204. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  205. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  206. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  207. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
  208. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
  209. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  210. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
  211. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  212. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
  213. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
  214. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
  215. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
  216. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
  217. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
  218. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
  219. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  220. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
  221. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
  222. data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
  223. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
  224. data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
  225. data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
  226. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
  227. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
  228. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
  229. data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
  230. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
  231. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  232. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
  233. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
  234. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
  235. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
  236. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
  237. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
  238. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
  239. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
  240. data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
  241. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
  242. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
  243. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
  244. data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  245. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
  246. data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  247. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
  248. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
  249. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
  250. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  251. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
  252. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
  253. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  254. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
  255. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
  256. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
  257. data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  258. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
  259. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
  260. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
  261. data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  262. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
  263. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  264. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
  265. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  266. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
  267. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
  268. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  269. data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  270. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
  271. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
  272. data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  273. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
  274. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
  275. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
  276. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
  277. data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  278. data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
  279. data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  280. data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
  281. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
  282. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
  283. data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  284. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
  285. data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
  295. data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  296. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
  297. data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  298. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  299. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  300. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  307. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  308. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  309. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  310. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  311. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  312. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  313. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
  314. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +126 -0
  315. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
  316. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
  317. data/vendor/eigen/Eigen/src/StlSupport/details.h +84 -0
  318. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
  319. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
  320. data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
  321. data/vendor/eigen/Eigen/src/misc/Kernel.h +79 -0
  322. data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
  323. data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
  324. data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
  325. data/vendor/eigen/Eigen/src/misc/lapacke.h +16291 -0
  326. data/vendor/eigen/Eigen/src/misc/lapacke_mangling.h +17 -0
  327. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +332 -0
  328. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
  329. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
  330. data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  331. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +163 -0
  332. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  333. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
  334. data/vendor/eigen/README.md +3 -0
  335. data/vendor/eigen/bench/README.txt +55 -0
  336. data/vendor/eigen/bench/btl/COPYING +340 -0
  337. data/vendor/eigen/bench/btl/README +154 -0
  338. data/vendor/eigen/bench/tensors/README +21 -0
  339. data/vendor/eigen/blas/README.txt +6 -0
  340. data/vendor/eigen/demos/mandelbrot/README +10 -0
  341. data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
  342. data/vendor/eigen/demos/opengl/README +13 -0
  343. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
  344. data/vendor/eigen/unsupported/README.txt +50 -0
  345. data/vendor/tomotopy/LICENSE +21 -0
  346. data/vendor/tomotopy/README.kr.rst +375 -0
  347. data/vendor/tomotopy/README.rst +382 -0
  348. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
  349. data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
  350. data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
  351. data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
  352. data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
  353. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
  354. data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
  355. data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
  356. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
  357. data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
  358. data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
  359. data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
  360. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
  361. data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
  362. data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
  363. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
  364. data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
  365. data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
  366. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
  367. data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
  368. data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
  369. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
  370. data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
  371. data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
  372. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
  373. data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
  374. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
  375. data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
  376. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
  377. data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
  378. data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
  379. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
  380. data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
  381. data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
  382. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
  383. data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
  384. data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
  385. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
  386. data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
  387. data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
  388. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
  389. data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
  390. data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
  391. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
  392. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
  393. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +169 -0
  394. data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
  395. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
  396. data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
  397. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
  398. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
  399. data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
  400. data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
  401. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
  402. data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
  403. data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
  404. data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
  405. data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
  406. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
  407. data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
  408. data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
  409. data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
  410. data/vendor/tomotopy/src/Utils/exception.h +28 -0
  411. data/vendor/tomotopy/src/Utils/math.h +281 -0
  412. data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
  413. data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
  414. data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
  415. data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
  416. data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
  417. data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
  418. data/vendor/tomotopy/src/Utils/text.hpp +49 -0
  419. data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
  420. metadata +531 -0
@@ -0,0 +1,45 @@
1
+ #pragma once
2
+ #include "LDA.h"
3
+
4
+ namespace tomoto
5
+ {
6
+ template<TermWeight _tw>
7
+ struct DocumentLLDA : public DocumentLDA<_tw>
8
+ {
9
+ using BaseDocument = DocumentLDA<_tw>;
10
+ using DocumentLDA<_tw>::DocumentLDA;
11
+ using WeightType = typename DocumentLDA<_tw>::WeightType;
12
+ Eigen::Matrix<int8_t, -1, 1> labelMask;
13
+
14
+ DEFINE_SERIALIZER_AFTER_BASE_WITH_VERSION(BaseDocument, 0, labelMask);
15
+ DEFINE_TAGGED_SERIALIZER_AFTER_BASE_WITH_VERSION(BaseDocument, 1, 0x00010001, labelMask);
16
+ };
17
+
18
+ class ILLDAModel : public ILDAModel
19
+ {
20
+ public:
21
+ using DefaultDocType = DocumentLLDA<TermWeight::one>;
22
+ static ILLDAModel* create(TermWeight _weight, size_t _K = 1,
23
+ Float alpha = 0.1, Float eta = 0.01, size_t seed = std::random_device{}(),
24
+ bool scalarRng = false);
25
+
26
+ virtual size_t addDoc(const std::vector<std::string>& words, const std::vector<std::string>& label) = 0;
27
+ virtual std::unique_ptr<DocumentBase> makeDoc(const std::vector<std::string>& words, const std::vector<std::string>& label) const = 0;
28
+
29
+ virtual size_t addDoc(const std::string& rawStr, const RawDocTokenizer::Factory& tokenizer,
30
+ const std::vector<std::string>& label) = 0;
31
+ virtual std::unique_ptr<DocumentBase> makeDoc(const std::string& rawStr, const RawDocTokenizer::Factory& tokenizer,
32
+ const std::vector<std::string>& label) const = 0;
33
+
34
+ virtual size_t addDoc(const std::string& rawStr, const std::vector<Vid>& words,
35
+ const std::vector<uint32_t>& pos, const std::vector<uint16_t>& len,
36
+ const std::vector<std::string>& label) = 0;
37
+ virtual std::unique_ptr<DocumentBase> makeDoc(const std::string& rawStr, const std::vector<Vid>& words,
38
+ const std::vector<uint32_t>& pos, const std::vector<uint16_t>& len,
39
+ const std::vector<std::string>& label) const = 0;
40
+
41
+ virtual const Dictionary& getTopicLabelDict() const = 0;
42
+
43
+ virtual size_t getNumTopicsPerLabel() const = 0;
44
+ };
45
+ }
@@ -0,0 +1,13 @@
1
+ #include "LLDAModel.hpp"
2
+
3
+ namespace tomoto
4
+ {
5
+ /*template class LLDAModel<TermWeight::one>;
6
+ template class LLDAModel<TermWeight::idf>;
7
+ template class LLDAModel<TermWeight::pmi>;*/
8
+
9
+ ILLDAModel* ILLDAModel::create(TermWeight _weight, size_t _K, Float _alpha, Float _eta, size_t seed, bool scalarRng)
10
+ {
11
+ TMT_SWITCH_TW(_weight, scalarRng, LLDAModel, _K, _alpha, _eta, seed);
12
+ }
13
+ }
@@ -0,0 +1,203 @@
1
+ #pragma once
2
+ #include "LDAModel.hpp"
3
+ #include "LLDA.h"
4
+
5
+ /*
6
+ Implementation of Labeled LDA using Gibbs sampling by bab2min
7
+
8
+ * Ramage, D., Hall, D., Nallapati, R., & Manning, C. D. (2009, August). Labeled LDA: A supervised topic model for credit attribution in multi-labeled corpora. In Proceedings of the 2009 Conference on Empirical Methods in Natural Language Processing: Volume 1-Volume 1 (pp. 248-256). Association for Computational Linguistics.
9
+ */
10
+
11
+ namespace tomoto
12
+ {
13
+ template<TermWeight _tw, typename _RandGen,
14
+ typename _Interface = ILLDAModel,
15
+ typename _Derived = void,
16
+ typename _DocType = DocumentLLDA<_tw>,
17
+ typename _ModelState = ModelStateLDA<_tw>>
18
+ class LLDAModel : public LDAModel<_tw, _RandGen, flags::generator_by_doc | flags::partitioned_multisampling, _Interface,
19
+ typename std::conditional<std::is_same<_Derived, void>::value, LLDAModel<_tw, _RandGen>, _Derived>::type,
20
+ _DocType, _ModelState>
21
+ {
22
+ protected:
23
+ using DerivedClass = typename std::conditional<std::is_same<_Derived, void>::value, LLDAModel<_tw, _RandGen>, _Derived>::type;
24
+ using BaseClass = LDAModel<_tw, _RandGen, flags::generator_by_doc | flags::partitioned_multisampling, _Interface, DerivedClass, _DocType, _ModelState>;
25
+ friend BaseClass;
26
+ friend typename BaseClass::BaseClass;
27
+ using WeightType = typename BaseClass::WeightType;
28
+
29
+ static constexpr char TMID[] = "LLDA";
30
+
31
+ Dictionary topicLabelDict;
32
+
33
+ template<bool _asymEta>
34
+ Float* getZLikelihoods(_ModelState& ld, const _DocType& doc, size_t docId, size_t vid) const
35
+ {
36
+ const size_t V = this->realV;
37
+ assert(vid < V);
38
+ auto& zLikelihood = ld.zLikelihood;
39
+ zLikelihood = (doc.numByTopic.array().template cast<Float>() + this->alphas.array())
40
+ * (ld.numByTopicWord.col(vid).array().template cast<Float>() + this->eta)
41
+ / (ld.numByTopic.array().template cast<Float>() + V * this->eta);
42
+ zLikelihood.array() *= doc.labelMask.array().template cast<Float>();
43
+ sample::prefixSum(zLikelihood.data(), this->K);
44
+ return &zLikelihood[0];
45
+ }
46
+
47
+ void prepareDoc(_DocType& doc, size_t docId, size_t wordSize) const
48
+ {
49
+ BaseClass::prepareDoc(doc, docId, wordSize);
50
+ if (doc.labelMask.size() == 0)
51
+ {
52
+ doc.labelMask.resize(this->K);
53
+ doc.labelMask.setOnes();
54
+ }
55
+ else if (doc.labelMask.size() < this->K)
56
+ {
57
+ size_t oldSize = doc.labelMask.size();
58
+ doc.labelMask.conservativeResize(this->K);
59
+ doc.labelMask.segment(oldSize, topicLabelDict.size() - oldSize).setZero();
60
+ doc.labelMask.segment(topicLabelDict.size(), this->K - topicLabelDict.size()).setOnes();
61
+ }
62
+ }
63
+
64
+ void initGlobalState(bool initDocs)
65
+ {
66
+ this->K = std::max(topicLabelDict.size(), (size_t)this->K);
67
+ this->alphas.resize(this->K);
68
+ this->alphas.array() = this->alpha;
69
+ BaseClass::initGlobalState(initDocs);
70
+ }
71
+
72
+ struct Generator
73
+ {
74
+ std::discrete_distribution<> theta;
75
+ };
76
+
77
+ Generator makeGeneratorForInit(const _DocType* doc) const
78
+ {
79
+ std::discrete_distribution<> theta{ doc->labelMask.data(), doc->labelMask.data() + this->K };
80
+ return Generator{ theta };
81
+ }
82
+
83
+ template<bool _Infer>
84
+ void updateStateWithDoc(Generator& g, _ModelState& ld, _RandGen& rgs, _DocType& doc, size_t i) const
85
+ {
86
+ auto& z = doc.Zs[i];
87
+ auto w = doc.words[i];
88
+ if (this->etaByTopicWord.size())
89
+ {
90
+ Eigen::Array<Float, -1, 1> col = this->etaByTopicWord.col(w);
91
+ for (size_t k = 0; k < col.size(); ++k) col[k] *= g.theta.probabilities()[k];
92
+ z = sample::sampleFromDiscrete(col.data(), col.data() + col.size(), rgs);
93
+ }
94
+ else
95
+ {
96
+ z = g.theta(rgs);
97
+ }
98
+ this->template addWordTo<1>(ld, doc, i, w, z);
99
+ }
100
+
101
+ public:
102
+ DEFINE_SERIALIZER_AFTER_BASE_WITH_VERSION(BaseClass, 0, topicLabelDict);
103
+ DEFINE_TAGGED_SERIALIZER_AFTER_BASE_WITH_VERSION(BaseClass, 1, 0x00010001, topicLabelDict);
104
+
105
+ LLDAModel(size_t _K = 1, Float _alpha = 1.0, Float _eta = 0.01, size_t _rg = std::random_device{}())
106
+ : BaseClass(_K, _alpha, _eta, _rg)
107
+ {
108
+ }
109
+
110
+ template<bool _const = false>
111
+ _DocType& _updateDoc(_DocType& doc, const std::vector<std::string>& labels)
112
+ {
113
+ if (_const)
114
+ {
115
+ doc.labelMask.resize(this->K);
116
+ doc.labelMask.setOnes();
117
+
118
+ std::vector<Vid> topicLabelIds;
119
+ for (auto& label : labels)
120
+ {
121
+ auto tid = topicLabelDict.toWid(label);
122
+ if (tid == (Vid)-1) continue;
123
+ topicLabelIds.emplace_back(tid);
124
+ }
125
+
126
+ if (!topicLabelIds.empty())
127
+ {
128
+ doc.labelMask.head(topicLabelDict.size()).setZero();
129
+ for (auto tid : topicLabelIds) doc.labelMask[tid] = 1;
130
+ }
131
+ }
132
+ else
133
+ {
134
+ if (!labels.empty())
135
+ {
136
+ std::vector<Vid> topicLabelIds;
137
+ for (auto& label : labels) topicLabelIds.emplace_back(topicLabelDict.add(label));
138
+ auto maxVal = *std::max_element(topicLabelIds.begin(), topicLabelIds.end());
139
+ doc.labelMask.resize(maxVal + 1);
140
+ doc.labelMask.setZero();
141
+ for (auto i : topicLabelIds) doc.labelMask[i] = 1;
142
+ }
143
+ }
144
+ return doc;
145
+ }
146
+
147
+ size_t addDoc(const std::vector<std::string>& words, const std::vector<std::string>& labels) override
148
+ {
149
+ auto doc = this->_makeDoc(words);
150
+ return this->_addDoc(_updateDoc(doc, labels));
151
+ }
152
+
153
+ std::unique_ptr<DocumentBase> makeDoc(const std::vector<std::string>& words, const std::vector<std::string>& labels) const override
154
+ {
155
+ auto doc = as_mutable(this)->template _makeDoc<true>(words);
156
+ return make_unique<_DocType>(as_mutable(this)->template _updateDoc<true>(doc, labels));
157
+ }
158
+
159
+ size_t addDoc(const std::string& rawStr, const RawDocTokenizer::Factory& tokenizer,
160
+ const std::vector<std::string>& labels) override
161
+ {
162
+ auto doc = this->template _makeRawDoc<false>(rawStr, tokenizer);
163
+ return this->_addDoc(_updateDoc(doc, labels));
164
+ }
165
+
166
+ std::unique_ptr<DocumentBase> makeDoc(const std::string& rawStr, const RawDocTokenizer::Factory& tokenizer,
167
+ const std::vector<std::string>& labels) const override
168
+ {
169
+ auto doc = as_mutable(this)->template _makeRawDoc<true>(rawStr, tokenizer);
170
+ return make_unique<_DocType>(as_mutable(this)->template _updateDoc<true>(doc, labels));
171
+ }
172
+
173
+ size_t addDoc(const std::string& rawStr, const std::vector<Vid>& words,
174
+ const std::vector<uint32_t>& pos, const std::vector<uint16_t>& len,
175
+ const std::vector<std::string>& labels) override
176
+ {
177
+ auto doc = this->_makeRawDoc(rawStr, words, pos, len);
178
+ return this->_addDoc(_updateDoc(doc, labels));
179
+ }
180
+
181
+ std::unique_ptr<DocumentBase> makeDoc(const std::string& rawStr, const std::vector<Vid>& words,
182
+ const std::vector<uint32_t>& pos, const std::vector<uint16_t>& len,
183
+ const std::vector<std::string>& labels) const override
184
+ {
185
+ auto doc = this->_makeRawDoc(rawStr, words, pos, len);
186
+ return make_unique<_DocType>(as_mutable(this)->template _updateDoc<true>(doc, labels));
187
+ }
188
+
189
+ std::vector<Float> getTopicsByDoc(const _DocType& doc) const
190
+ {
191
+ std::vector<Float> ret(this->K);
192
+ auto maskedAlphas = this->alphas.array() * doc.labelMask.template cast<Float>().array();
193
+ Eigen::Map<Eigen::Matrix<Float, -1, 1>> { ret.data(), this->K }.array() =
194
+ (doc.numByTopic.array().template cast<Float>() + maskedAlphas)
195
+ / (doc.getSumWordWeight() + maskedAlphas.sum());
196
+ return ret;
197
+ }
198
+
199
+ const Dictionary& getTopicLabelDict() const override { return topicLabelDict; }
200
+
201
+ size_t getNumTopicsPerLabel() const override { return 1; }
202
+ };
203
+ }
@@ -0,0 +1,63 @@
1
+ #pragma once
2
+ #include "LDA.h"
3
+
4
+ namespace tomoto
5
+ {
6
+ template<TermWeight _tw>
7
+ struct DocumentMGLDA : public DocumentLDA<_tw>
8
+ {
9
+ using BaseDocument = DocumentLDA<_tw>;
10
+ using DocumentLDA<_tw>::DocumentLDA;
11
+ using WeightType = typename DocumentLDA<_tw>::WeightType;
12
+
13
+ std::vector<uint16_t> sents; // sentence id of each word (const)
14
+ std::vector<WeightType> numBySent; // number of words in the sentence (const)
15
+
16
+ //std::vector<Tid> Zs; // gl./loc. and topic assignment
17
+ std::vector<uint8_t> Vs; // window assignment
18
+ WeightType numGl = 0; // number of words assigned as gl.
19
+ //std::vector<uint32_t> numByTopic; // len = K + KL
20
+ Eigen::Matrix<WeightType, -1, -1> numBySentWin; // len = S * T
21
+ Eigen::Matrix<WeightType, -1, 1> numByWinL; // number of words assigned as loc. in the window (len = S + T - 1)
22
+ Eigen::Matrix<WeightType, -1, 1> numByWin; // number of words in the window (len = S + T - 1)
23
+ Eigen::Matrix<WeightType, -1, -1> numByWinTopicL; // number of words in the loc. topic in the window (len = KL * (S + T - 1))
24
+
25
+ DEFINE_SERIALIZER_AFTER_BASE_WITH_VERSION(BaseDocument, 0, sents, Vs, numGl, numBySentWin, numByWinL, numByWin, numByWinTopicL);
26
+ DEFINE_TAGGED_SERIALIZER_AFTER_BASE_WITH_VERSION(BaseDocument, 1, 0x00010001, sents, Vs, numGl, numBySentWin, numByWinL, numByWin, numByWinTopicL);
27
+
28
+ template<typename _TopicModel> void update(WeightType* ptr, const _TopicModel& mdl);
29
+ };
30
+
31
+ class IMGLDAModel : public ILDAModel
32
+ {
33
+ public:
34
+ using DefaultDocType = DocumentMGLDA<TermWeight::one>;
35
+ static IMGLDAModel* create(TermWeight _weight, size_t _KG = 1, size_t _KL = 1, size_t _T = 3,
36
+ Float _alphaG = 0.1, Float _alphaL = 0.1, Float _alphaMG = 0.1, Float _alphaML = 0.1,
37
+ Float _etaG = 0.01, Float _etaL = 0.01, Float _gamma = 0.1, size_t seed = std::random_device{}(),
38
+ bool scalarRng = false);
39
+
40
+ virtual size_t addDoc(const std::vector<std::string>& words, const std::string& delimiter) = 0;
41
+ virtual std::unique_ptr<DocumentBase> makeDoc(const std::vector<std::string>& words, const std::string& delimiter) const = 0;
42
+
43
+ virtual size_t addDoc(const std::string& rawStr, const RawDocTokenizer::Factory& tokenizer,
44
+ const std::string& delimiter) = 0;
45
+ virtual std::unique_ptr<DocumentBase> makeDoc(const std::string& rawStr, const RawDocTokenizer::Factory& tokenizer,
46
+ const std::string& delimiter) const = 0;
47
+
48
+ virtual size_t addDoc(const std::string& rawStr, const std::vector<Vid>& words,
49
+ const std::vector<uint32_t>& pos, const std::vector<uint16_t>& len,
50
+ const std::string& delimiter) = 0;
51
+ virtual std::unique_ptr<DocumentBase> makeDoc(const std::string& rawStr, const std::vector<Vid>& words,
52
+ const std::vector<uint32_t>& pos, const std::vector<uint16_t>& len,
53
+ const std::string& delimiter) const = 0;
54
+
55
+ virtual size_t getKL() const = 0;
56
+ virtual size_t getT() const = 0;
57
+ virtual Float getAlphaL() const = 0;
58
+ virtual Float getEtaL() const = 0;
59
+ virtual Float getGamma() const = 0;
60
+ virtual Float getAlphaM() const = 0;
61
+ virtual Float getAlphaML() const = 0;
62
+ };
63
+ }
@@ -0,0 +1,17 @@
1
+ #include "MGLDAModel.hpp"
2
+
3
+ namespace tomoto
4
+ {
5
+ /*template class MGLDAModel<TermWeight::one>;
6
+ template class MGLDAModel<TermWeight::idf>;
7
+ template class MGLDAModel<TermWeight::pmi>;*/
8
+
9
+ IMGLDAModel* IMGLDAModel::create(TermWeight _weight, size_t _KG, size_t _KL, size_t _T,
10
+ Float _alphaG, Float _alphaL, Float _alphaMG, Float _alphaML,
11
+ Float _etaG, Float _etaL, Float _gamma, size_t seed, bool scalarRng)
12
+ {
13
+ TMT_SWITCH_TW(_weight, scalarRng, MGLDAModel, _KG, _KL, _T,
14
+ _alphaG, _alphaL, _alphaMG, _alphaML,
15
+ _etaG, _etaL, _gamma, seed);
16
+ }
17
+ }
@@ -0,0 +1,558 @@
1
+ #pragma once
2
+ #include "LDAModel.hpp"
3
+ #include "MGLDA.h"
4
+ /*
5
+ Implementation of MG-LDA using Gibbs sampling by bab2min
6
+ Improved version of java implementation(https://github.com/yinfeiy/MG-LDA)
7
+
8
+ * Titov, I., & McDonald, R. (2008, April). Modeling online reviews with multi-grain topic models. In Proceedings of the 17th international conference on World Wide Web (pp. 111-120). ACM.
9
+
10
+ */
11
+
12
+ namespace tomoto
13
+ {
14
+ template<TermWeight _tw, typename _RandGen,
15
+ typename _Interface = IMGLDAModel,
16
+ typename _Derived = void,
17
+ typename _DocType = DocumentMGLDA<_tw>,
18
+ typename _ModelState = ModelStateLDA<_tw>>
19
+ class MGLDAModel : public LDAModel<_tw, _RandGen, flags::partitioned_multisampling, _Interface,
20
+ typename std::conditional<std::is_same<_Derived, void>::value, MGLDAModel<_tw, _RandGen>, _Derived>::type,
21
+ _DocType, _ModelState>
22
+ {
23
+ protected:
24
+ using DerivedClass = typename std::conditional<std::is_same<_Derived, void>::value, MGLDAModel<_tw, _RandGen>, _Derived>::type;
25
+ using BaseClass = LDAModel<_tw, _RandGen, flags::partitioned_multisampling, _Interface, DerivedClass, _DocType, _ModelState>;
26
+ friend BaseClass;
27
+ friend typename BaseClass::BaseClass;
28
+ using WeightType = typename BaseClass::WeightType;
29
+
30
+ Float alphaL;
31
+ Float alphaM, alphaML;
32
+ Float etaL;
33
+ Float gamma;
34
+ Tid KL;
35
+ uint32_t T; // window size
36
+
37
+ // window and gl./loc. and topic assignment likelihoods for new word. ret T*(K+KL) FLOATs
38
+ Float* getVZLikelihoods(_ModelState& ld, const _DocType& doc, Vid vid, uint16_t s) const
39
+ {
40
+ const auto V = this->realV;
41
+ const auto K = this->K;
42
+ const auto alpha = this->alpha;
43
+ const auto eta = this->eta;
44
+ assert(vid < V);
45
+ auto& zLikelihood = ld.zLikelihood;
46
+ for (size_t v = 0; v < T; ++v)
47
+ {
48
+ Float pLoc = (doc.numByWinL[s + v] + alphaML) / (doc.numByWin[s + v] + alphaM + alphaML);
49
+ Float pW = doc.numBySentWin(s, v) + gamma;
50
+ if (K)
51
+ {
52
+ zLikelihood.segment(v * (K + KL), K) = (1 - pLoc) * pW
53
+ * (doc.numByTopic.segment(0, K).array().template cast<Float>() + alpha) / (doc.numGl + K * alpha)
54
+ * (ld.numByTopicWord.block(0, vid, K, 1).array().template cast<Float>() + eta) / (ld.numByTopic.segment(0, K).array().template cast<Float>() + V * eta);
55
+ }
56
+ zLikelihood.segment(v * (K + KL) + K, KL) = pLoc * pW
57
+ * (doc.numByWinTopicL.col(s + v).array().template cast<Float>()) / (doc.numByWinL[s + v] + KL * alphaL)
58
+ * (ld.numByTopicWord.block(K, vid, KL, 1).array().template cast<Float>() + etaL) / (ld.numByTopic.segment(K, KL).array().template cast<Float>() + V * etaL);
59
+ }
60
+
61
+ sample::prefixSum(zLikelihood.data(), T * (K + KL));
62
+ return &zLikelihood[0];
63
+ }
64
+
65
+ template<int _inc>
66
+ inline void addWordTo(_ModelState& ld, _DocType& doc, uint32_t pid, Vid vid, Tid tid, uint16_t s, uint8_t w, uint8_t r) const
67
+ {
68
+ const auto K = this->K;
69
+
70
+ assert(r != 0 || tid < K);
71
+ assert(r == 0 || tid < KL);
72
+ assert(w < T);
73
+ assert(r < 2);
74
+ assert(vid < this->realV);
75
+ assert(s < doc.numBySent.size());
76
+
77
+ constexpr bool _dec = _inc < 0 && _tw != TermWeight::one;
78
+ typename std::conditional<_tw != TermWeight::one, float, int32_t>::type weight
79
+ = _tw != TermWeight::one ? doc.wordWeights[pid] : 1;
80
+
81
+ updateCnt<_dec>(doc.numByWin[s + w], _inc * weight);
82
+ updateCnt<_dec>(doc.numBySentWin(s, w), _inc * weight);
83
+ if (r == 0)
84
+ {
85
+ updateCnt<_dec>(doc.numByTopic[tid], _inc * weight);
86
+ updateCnt<_dec>(doc.numGl, _inc * weight);
87
+ updateCnt<_dec>(ld.numByTopic[tid], _inc * weight);
88
+ updateCnt<_dec>(ld.numByTopicWord(tid, vid), _inc * weight);
89
+ }
90
+ else
91
+ {
92
+ updateCnt<_dec>(doc.numByTopic[tid + K], _inc * weight);
93
+ updateCnt<_dec>(doc.numByWinL[s + w], _inc * weight);
94
+ updateCnt<_dec>(doc.numByWinTopicL(tid, s + w), _inc * weight);
95
+ updateCnt<_dec>(ld.numByTopic[tid + K], _inc * weight);
96
+ updateCnt<_dec>(ld.numByTopicWord(tid + K, vid), _inc * weight);
97
+ }
98
+ }
99
+
100
+ template<ParallelScheme _ps, bool _infer, typename _ExtraDocData>
101
+ void sampleDocument(_DocType& doc, const _ExtraDocData& edd, size_t docId, _ModelState& ld, _RandGen& rgs, size_t iterationCnt, size_t partitionId = 0) const
102
+ {
103
+ size_t b = 0, e = doc.words.size();
104
+ if (_ps == ParallelScheme::partition)
105
+ {
106
+ b = edd.chunkOffsetByDoc(partitionId, docId);
107
+ e = edd.chunkOffsetByDoc(partitionId + 1, docId);
108
+ }
109
+
110
+ size_t vOffset = (_ps == ParallelScheme::partition && partitionId) ? edd.vChunkOffset[partitionId - 1] : 0;
111
+
112
+ const auto K = this->K;
113
+ for (size_t w = b; w < e; ++w)
114
+ {
115
+ if (doc.words[w] >= this->realV) continue;
116
+ addWordTo<-1>(ld, doc, w, doc.words[w] - vOffset, doc.Zs[w] - (doc.Zs[w] < K ? 0 : K), doc.sents[w], doc.Vs[w], doc.Zs[w] < K ? 0 : 1);
117
+ auto dist = getVZLikelihoods(ld, doc, doc.words[w] - vOffset, doc.sents[w]);
118
+ auto vz = sample::sampleFromDiscreteAcc(dist, dist + T * (K + KL), rgs);
119
+ doc.Vs[w] = vz / (K + KL);
120
+ doc.Zs[w] = vz % (K + KL);
121
+ addWordTo<1>(ld, doc, w, doc.words[w] - vOffset, doc.Zs[w] - (doc.Zs[w] < K ? 0 : K), doc.sents[w], doc.Vs[w], doc.Zs[w] < K ? 0 : 1);
122
+ }
123
+ }
124
+
125
+ template<typename _DocIter>
126
+ double getLLDocs(_DocIter _first, _DocIter _last) const
127
+ {
128
+ const auto K = this->K;
129
+ const auto alpha = this->alpha;
130
+
131
+ size_t totSents = 0, totWins = 0;
132
+ double ll = 0;
133
+ if (K) ll += (math::lgammaT(K*alpha) - math::lgammaT(alpha)*K) * std::distance(_first, _last);
134
+ for (; _first != _last; ++_first)
135
+ {
136
+ auto& doc = *_first;
137
+ const size_t S = doc.numBySent.size();
138
+ if (K)
139
+ {
140
+ ll -= math::lgammaT(doc.numGl + K * alpha);
141
+ for (Tid k = 0; k < K; ++k)
142
+ {
143
+ ll += math::lgammaT(doc.numByTopic[k] + alpha);
144
+ }
145
+ }
146
+
147
+ for (size_t v = 0; v < S + T - 1; ++v)
148
+ {
149
+ ll -= math::lgammaT(doc.numByWinL[v] + KL * alphaL);
150
+ for (Tid k = 0; k < KL; ++k)
151
+ {
152
+ ll += math::lgammaT(doc.numByWinTopicL(k, v) + alphaL);
153
+ }
154
+ if (K)
155
+ {
156
+ ll += math::lgammaT(std::max((Float)doc.numByWin[v] - doc.numByWinL[v], (Float)0) + alphaM);
157
+ ll += math::lgammaT(doc.numByWinL[v] + alphaML);
158
+ ll -= math::lgammaT(doc.numByWin[v] + alphaM + alphaML);
159
+ }
160
+ }
161
+
162
+ totWins += S + T - 1;
163
+ totSents += S;
164
+ for (size_t s = 0; s < S; ++s)
165
+ {
166
+ ll -= math::lgammaT(doc.numBySent[s] + T * gamma);
167
+ for (size_t v = 0; v < T; ++v)
168
+ {
169
+ ll += math::lgammaT(doc.numBySentWin(s, v) + gamma);
170
+ }
171
+ }
172
+ }
173
+ ll += (math::lgammaT(KL*alphaL) - math::lgammaT(alphaL)*KL) * totWins;
174
+ if (K) ll += (math::lgammaT(alphaM + alphaML) - math::lgammaT(alphaM) - math::lgammaT(alphaML)) * totWins;
175
+ ll += (math::lgammaT(T * gamma) - math::lgammaT(gamma) * T) * totSents;
176
+
177
+ return ll;
178
+ }
179
+
180
+ double getLLRest(const _ModelState& ld) const
181
+ {
182
+ const auto V = this->realV;
183
+ const auto K = this->K;
184
+ const auto eta = this->eta;
185
+
186
+ double ll = 0;
187
+ ll += (math::lgammaT(V*eta) - math::lgammaT(eta)*V) * K;
188
+ for (Tid k = 0; k < K; ++k)
189
+ {
190
+ ll -= math::lgammaT(ld.numByTopic[k] + V * eta);
191
+ for (Vid w = 0; w < V; ++w)
192
+ {
193
+ ll += math::lgammaT(ld.numByTopicWord(k, w) + eta);
194
+ }
195
+ }
196
+ ll += (math::lgammaT(V*etaL) - math::lgammaT(etaL)*V) * KL;
197
+ for (Tid k = 0; k < KL; ++k)
198
+ {
199
+ ll -= math::lgammaT(ld.numByTopic[k + K] + V * etaL);
200
+ for (Vid w = 0; w < V; ++w)
201
+ {
202
+ ll += math::lgammaT(ld.numByTopicWord(k + K, w) + etaL);
203
+ }
204
+ }
205
+ return ll;
206
+ }
207
+
208
+ double getLL() const
209
+ {
210
+ double ll = 0;
211
+ const auto V = this->realV;
212
+ const auto K = this->K;
213
+ const auto alpha = this->alpha;
214
+ const auto eta = this->eta;
215
+ size_t totSents = 0, totWins = 0;
216
+ if(K) ll += (math::lgammaT(K*alpha) - math::lgammaT(alpha)*K) * this->docs.size();
217
+ for (size_t i = 0; i < this->docs.size(); ++i)
218
+ {
219
+ auto& doc = this->docs[i];
220
+ const size_t S = doc.numBySent.size();
221
+ if (K)
222
+ {
223
+ ll -= math::lgammaT(doc.numGl + K * alpha);
224
+ for (Tid k = 0; k < K; ++k)
225
+ {
226
+ ll += math::lgammaT(doc.numByTopic[k] + alpha);
227
+ }
228
+ }
229
+
230
+ for (size_t v = 0; v < S + T - 1; ++v)
231
+ {
232
+ ll -= math::lgammaT(doc.numByWinL[v] + KL * alphaL);
233
+ for (Tid k = 0; k < KL; ++k)
234
+ {
235
+ ll += math::lgammaT(doc.numByWinTopicL(k, v) + alphaL);
236
+ }
237
+ if (K)
238
+ {
239
+ ll += math::lgammaT(std::max((Float)doc.numByWin[v] - doc.numByWinL[v], (Float)0) + alphaM);
240
+ ll += math::lgammaT(doc.numByWinL[v] + alphaML);
241
+ ll -= math::lgammaT(doc.numByWin[v] + alphaM + alphaML);
242
+ }
243
+ }
244
+
245
+ totWins += S + T - 1;
246
+ totSents += S;
247
+ for (size_t s = 0; s < S; ++s)
248
+ {
249
+ ll -= math::lgammaT(doc.numBySent[s] + T * gamma);
250
+ for (size_t v = 0; v < T; ++v)
251
+ {
252
+ ll += math::lgammaT(doc.numBySentWin(s, v) + gamma);
253
+ }
254
+ }
255
+ }
256
+ ll += (math::lgammaT(KL*alphaL) - math::lgammaT(alphaL)*KL) * totWins;
257
+ if(K) ll += (math::lgammaT(alphaM + alphaML) - math::lgammaT(alphaM) - math::lgammaT(alphaML)) * totWins;
258
+ ll += (math::lgammaT(T * gamma) - math::lgammaT(gamma) * T) * totSents;
259
+
260
+ //
261
+ ll += (math::lgammaT(V*eta) - math::lgammaT(eta)*V) * K;
262
+ for (Tid k = 0; k < K; ++k)
263
+ {
264
+ ll -= math::lgammaT(this->globalState.numByTopic[k] + V * eta);
265
+ for (Vid w = 0; w < V; ++w)
266
+ {
267
+ ll += math::lgammaT(this->globalState.numByTopicWord(k, w) + eta);
268
+ }
269
+ }
270
+ ll += (math::lgammaT(V*etaL) - math::lgammaT(etaL)*V) * KL;
271
+ for (Tid k = 0; k < KL; ++k)
272
+ {
273
+ ll -= math::lgammaT(this->globalState.numByTopic[k + K] + V * etaL);
274
+ for (Vid w = 0; w < V; ++w)
275
+ {
276
+ ll += math::lgammaT(this->globalState.numByTopicWord(k + K, w) + etaL);
277
+ }
278
+ }
279
+
280
+ return ll;
281
+ }
282
+
283
+ void prepareDoc(_DocType& doc, size_t docId, size_t wordSize) const
284
+ {
285
+ sortAndWriteOrder(doc.words, doc.wOrder);
286
+ auto tmp = doc.sents;
287
+ for (size_t i = 0; i < doc.wOrder.size(); ++i)
288
+ {
289
+ doc.sents[doc.wOrder[i]] = tmp[i];
290
+ }
291
+
292
+ const size_t S = doc.numBySent.size();
293
+ std::fill(doc.numBySent.begin(), doc.numBySent.end(), 0);
294
+ doc.Zs = tvector<Tid>(wordSize);
295
+ doc.Vs.resize(wordSize);
296
+ if (_tw != TermWeight::one) doc.wordWeights.resize(wordSize);
297
+ doc.numByTopic.init(nullptr, this->K + KL);
298
+ doc.numBySentWin = Eigen::Matrix<WeightType, -1, -1>::Zero(S, T);
299
+ doc.numByWin = Eigen::Matrix<WeightType, -1, 1>::Zero(S + T - 1);
300
+ doc.numByWinL = Eigen::Matrix<WeightType, -1, 1>::Zero(S + T - 1);
301
+ doc.numByWinTopicL = Eigen::Matrix<WeightType, -1, -1>::Zero(KL, S + T - 1);
302
+ }
303
+
304
+ void initGlobalState(bool initDocs)
305
+ {
306
+ const size_t V = this->realV;
307
+ this->globalState.zLikelihood = Eigen::Matrix<Float, -1, 1>::Zero(T * (this->K + KL));
308
+ if (initDocs)
309
+ {
310
+ this->globalState.numByTopic = Eigen::Matrix<WeightType, -1, 1>::Zero(this->K + KL);
311
+ this->globalState.numByTopicWord = Eigen::Matrix<WeightType, -1, -1>::Zero(this->K + KL, V);
312
+ }
313
+ }
314
+
315
+ struct Generator
316
+ {
317
+ std::discrete_distribution<uint16_t> pi;
318
+ std::uniform_int_distribution<Tid> theta;
319
+ std::uniform_int_distribution<Tid> thetaL;
320
+ std::uniform_int_distribution<uint16_t> psi;
321
+ };
322
+
323
+ Generator makeGeneratorForInit(const _DocType*) const
324
+ {
325
+ return Generator{ std::discrete_distribution<uint16_t>{ alphaM, alphaML },
326
+ std::uniform_int_distribution<Tid>{ 0, (Tid)(this->K - 1) },
327
+ std::uniform_int_distribution<Tid>{ 0, (Tid)(KL - 1) },
328
+ std::uniform_int_distribution<uint16_t>{ 0, (uint16_t)(T - 1) } };
329
+ }
330
+
331
+ template<bool _Infer>
332
+ void updateStateWithDoc(Generator& g, _ModelState& ld, _RandGen& rgs, _DocType& doc, size_t i) const
333
+ {
334
+ doc.numBySent[doc.sents[i]] += _tw == TermWeight::one ? 1 : doc.wordWeights[i];
335
+ auto w = doc.words[i];
336
+ size_t r, z;
337
+ if (this->etaByTopicWord.size())
338
+ {
339
+ Eigen::Array<Float, -1, 1> col = this->etaByTopicWord.col(w);
340
+ col.head(this->K) *= alphaM / this->K;
341
+ col.tail(this->KL) *= alphaML / this->KL;
342
+ doc.Zs[i] = z = sample::sampleFromDiscrete(col.data(), col.data() + col.size(), rgs);
343
+ r = z < this->K;
344
+ if (z >= this->K) z -= this->K;
345
+ }
346
+ else
347
+ {
348
+ r = g.pi(rgs);
349
+ z = (r ? g.thetaL : g.theta)(rgs);
350
+ doc.Zs[i] = z + (r ? this->K : 0);
351
+ }
352
+
353
+ auto& win = doc.Vs[i];
354
+ win = g.psi(rgs);
355
+ addWordTo<1>(ld, doc, i, w, z, doc.sents[i], win, r);
356
+ }
357
+
358
+ std::vector<uint64_t> _getTopicsCount() const
359
+ {
360
+ std::vector<uint64_t> cnt(this->K + KL);
361
+ for (auto& doc : this->docs)
362
+ {
363
+ for (size_t i = 0; i < doc.Zs.size(); ++i)
364
+ {
365
+ if (doc.words[i] < this->realV) ++cnt[doc.Zs[i]];
366
+ }
367
+ }
368
+ return cnt;
369
+ }
370
+
371
+ public:
372
+ DEFINE_SERIALIZER_AFTER_BASE_WITH_VERSION(BaseClass, 0, alphaL, alphaM, alphaML, etaL, gamma, KL, T);
373
+ DEFINE_TAGGED_SERIALIZER_AFTER_BASE_WITH_VERSION(BaseClass, 1, 0x00010001, alphaL, alphaM, alphaML, etaL, gamma, KL, T);
374
+
375
+ MGLDAModel(size_t _KG = 1, size_t _KL = 1, size_t _T = 3,
376
+ Float _alphaG = 0.1, Float _alphaL = 0.1, Float _alphaMG = 0.1, Float _alphaML = 0.1,
377
+ Float _etaG = 0.01, Float _etaL = 0.01, Float _gamma = 0.1, size_t _rg = std::random_device{}())
378
+ : BaseClass(_KG, _alphaG, _etaG, _rg), KL(_KL), T(_T),
379
+ alphaL(_alphaL), alphaM(_KG ? _alphaMG : 0), alphaML(_alphaML),
380
+ etaL(_etaL), gamma(_gamma)
381
+ {
382
+ if (_KL == 0 || _KL >= 0x80000000) THROW_ERROR_WITH_INFO(std::runtime_error, text::format("wrong KL value (KL = %zd)", _KL));
383
+ if (_T == 0 || _T >= 0x80000000) THROW_ERROR_WITH_INFO(std::runtime_error, text::format("wrong T value (T = %zd)", _T));
384
+ if (_alphaL <= 0) THROW_ERROR_WITH_INFO(std::runtime_error, text::format("wrong alphaL value (alphaL = %f)", _alphaL));
385
+ if (_etaL <= 0) THROW_ERROR_WITH_INFO(std::runtime_error, text::format("wrong etaL value (etaL = %f)", _etaL));
386
+ }
387
+
388
+
389
+ template<bool _const = false>
390
+ _DocType _makeDoc(const std::vector<std::string>& words, const std::string& delimiter)
391
+ {
392
+ _DocType doc{ 1.f };
393
+ size_t numSent = 0;
394
+ for (auto& w : words)
395
+ {
396
+ if (w == delimiter)
397
+ {
398
+ ++numSent;
399
+ continue;
400
+ }
401
+
402
+ Vid id;
403
+ if (_const)
404
+ {
405
+ id = this->dict.toWid(w);
406
+ if (id == (Vid)-1) continue;
407
+ }
408
+ else
409
+ {
410
+ id = this->dict.add(w);
411
+ }
412
+ doc.words.emplace_back(id);
413
+ doc.sents.emplace_back(numSent);
414
+ }
415
+ doc.numBySent.resize(doc.sents.empty() ? 0 : (doc.sents.back() + 1));
416
+ return doc;
417
+ }
418
+
419
+ size_t addDoc(const std::vector<std::string>& words, const std::string& delimiter) override
420
+ {
421
+ return this->_addDoc(_makeDoc(words, delimiter));
422
+ }
423
+
424
+ std::unique_ptr<DocumentBase> makeDoc(const std::vector<std::string>& words, const std::string& delimiter) const override
425
+ {
426
+ return make_unique<_DocType>(as_mutable(this)->template _makeDoc<true>(words, delimiter));
427
+ }
428
+
429
+ template<bool _const, typename _FnTokenizer>
430
+ _DocType _makeRawDoc(const std::string& rawStr, _FnTokenizer&& tokenizer, const std::string& delimiter)
431
+ {
432
+ _DocType doc{ 1.f };
433
+ size_t numSent = 0;
434
+ doc.rawStr = rawStr;
435
+ for (auto& p : tokenizer(doc.rawStr))
436
+ {
437
+ if (std::get<0>(p) == delimiter)
438
+ {
439
+ ++numSent;
440
+ continue;
441
+ }
442
+
443
+ Vid wid;
444
+ if (_const)
445
+ {
446
+ wid = this->dict.toWid(std::get<0>(p));
447
+ if (wid == (Vid)-1) continue;
448
+ }
449
+ else
450
+ {
451
+ wid = this->dict.add(std::get<0>(p));
452
+ }
453
+ auto pos = std::get<1>(p);
454
+ auto len = std::get<2>(p);
455
+ doc.words.emplace_back(wid);
456
+ doc.sents.emplace_back(numSent);
457
+ doc.origWordPos.emplace_back(pos);
458
+ doc.origWordLen.emplace_back(len);
459
+ }
460
+ doc.numBySent.resize(doc.sents.empty() ? 0 : (doc.sents.back() + 1));
461
+ return doc;
462
+ }
463
+
464
+ size_t addDoc(const std::string& rawStr, const RawDocTokenizer::Factory& tokenizer,
465
+ const std::string& delimiter)
466
+ {
467
+ return this->_addDoc(_makeRawDoc<false>(rawStr, tokenizer, delimiter));
468
+ }
469
+
470
+ std::unique_ptr<DocumentBase> makeDoc(const std::string& rawStr, const RawDocTokenizer::Factory& tokenizer,
471
+ const std::string& delimiter) const
472
+ {
473
+ return make_unique<_DocType>(as_mutable(this)->template _makeRawDoc<true>(rawStr, tokenizer, delimiter));
474
+ }
475
+
476
+ _DocType _makeRawDoc(const std::string& rawStr, const std::vector<Vid>& words,
477
+ const std::vector<uint32_t>& pos, const std::vector<uint16_t>& len, const std::string& delimiter) const
478
+ {
479
+ _DocType doc{ 1.f };
480
+ doc.rawStr = rawStr;
481
+ size_t numSent = 0;
482
+ Vid delimiterId = this->dict.toWid(delimiter);
483
+ for (size_t i = 0; i < words.size(); ++i)
484
+ {
485
+ auto& w = words[i];
486
+ if (w == delimiterId)
487
+ {
488
+ ++numSent;
489
+ continue;
490
+ }
491
+ doc.words.emplace_back(w);
492
+ doc.sents.emplace_back(numSent);
493
+ if (words.size() == pos.size())
494
+ {
495
+ doc.origWordPos.emplace_back(pos[i]);
496
+ doc.origWordLen.emplace_back(len[i]);
497
+ }
498
+ }
499
+ doc.numBySent.resize(doc.sents.empty() ? 0 : (doc.sents.back() + 1));
500
+ return doc;
501
+ }
502
+
503
+ size_t addDoc(const std::string& rawStr, const std::vector<Vid>& words,
504
+ const std::vector<uint32_t>& pos, const std::vector<uint16_t>& len,
505
+ const std::string& delimiter)
506
+ {
507
+ return this->_addDoc(_makeRawDoc(rawStr, words, pos, len, delimiter));
508
+ }
509
+
510
+ std::unique_ptr<DocumentBase> makeDoc(const std::string& rawStr, const std::vector<Vid>& words,
511
+ const std::vector<uint32_t>& pos, const std::vector<uint16_t>& len,
512
+ const std::string& delimiter) const
513
+ {
514
+ return make_unique<_DocType>(_makeRawDoc(rawStr, words, pos, len, delimiter));
515
+ }
516
+
517
+ void setWordPrior(const std::string& word, const std::vector<Float>& priors) override
518
+ {
519
+ if (priors.size() != this->K + KL) THROW_ERROR_WITH_INFO(exception::InvalidArgument, "priors.size() must be equal to K.");
520
+ for (auto p : priors)
521
+ {
522
+ if (p < 0) THROW_ERROR_WITH_INFO(exception::InvalidArgument, "priors must not be less than 0.");
523
+ }
524
+ this->dict.add(word);
525
+ this->etaByWord.emplace(word, priors);
526
+ }
527
+
528
+ std::vector<Float> getTopicsByDoc(const _DocType& doc) const
529
+ {
530
+ std::vector<Float> ret(this->K + KL);
531
+ Eigen::Map<Eigen::Matrix<Float, -1, 1>> { ret.data(), this->K + KL }.array() =
532
+ doc.numByTopic.array().template cast<Float>() / doc.getSumWordWeight();
533
+ return ret;
534
+ }
535
+
536
+ GETTER(KL, size_t, KL);
537
+ GETTER(T, size_t, T);
538
+ GETTER(Gamma, Float, gamma);
539
+ GETTER(AlphaL, Float, alphaL);
540
+ GETTER(EtaL, Float, etaL);
541
+ GETTER(AlphaM, Float, alphaM);
542
+ GETTER(AlphaML, Float, alphaML);
543
+ };
544
+
545
+ template<TermWeight _tw>
546
+ template<typename _TopicModel>
547
+ void DocumentMGLDA<_tw>::update(WeightType * ptr, const _TopicModel & mdl)
548
+ {
549
+ this->numByTopic.init(ptr, mdl.getK() + mdl.getKL());
550
+ numBySent.resize(*std::max_element(sents.begin(), sents.end()) + 1);
551
+ for (size_t i = 0; i < this->Zs.size(); ++i)
552
+ {
553
+ if (this->words[i] >= mdl.getV()) continue;
554
+ this->numByTopic[this->Zs[i]] += _tw != TermWeight::one ? this->wordWeights[i] : 1;
555
+ numBySent[sents[i]] += _tw != TermWeight::one ? this->wordWeights[i] : 1;
556
+ }
557
+ }
558
+ }