tomoto 0.1.0

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Files changed (420) hide show
  1. checksums.yaml +7 -0
  2. data/CHANGELOG.md +3 -0
  3. data/LICENSE.txt +22 -0
  4. data/README.md +123 -0
  5. data/ext/tomoto/ext.cpp +245 -0
  6. data/ext/tomoto/extconf.rb +28 -0
  7. data/lib/tomoto.rb +12 -0
  8. data/lib/tomoto/ct.rb +11 -0
  9. data/lib/tomoto/hdp.rb +11 -0
  10. data/lib/tomoto/lda.rb +67 -0
  11. data/lib/tomoto/version.rb +3 -0
  12. data/vendor/EigenRand/EigenRand/Core.h +1139 -0
  13. data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
  14. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
  15. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
  16. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
  17. data/vendor/EigenRand/EigenRand/EigenRand +19 -0
  18. data/vendor/EigenRand/EigenRand/Macro.h +24 -0
  19. data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
  20. data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
  21. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
  22. data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
  23. data/vendor/EigenRand/EigenRand/doc.h +220 -0
  24. data/vendor/EigenRand/LICENSE +21 -0
  25. data/vendor/EigenRand/README.md +288 -0
  26. data/vendor/eigen/COPYING.BSD +26 -0
  27. data/vendor/eigen/COPYING.GPL +674 -0
  28. data/vendor/eigen/COPYING.LGPL +502 -0
  29. data/vendor/eigen/COPYING.MINPACK +52 -0
  30. data/vendor/eigen/COPYING.MPL2 +373 -0
  31. data/vendor/eigen/COPYING.README +18 -0
  32. data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
  33. data/vendor/eigen/Eigen/Cholesky +46 -0
  34. data/vendor/eigen/Eigen/CholmodSupport +48 -0
  35. data/vendor/eigen/Eigen/Core +537 -0
  36. data/vendor/eigen/Eigen/Dense +7 -0
  37. data/vendor/eigen/Eigen/Eigen +2 -0
  38. data/vendor/eigen/Eigen/Eigenvalues +61 -0
  39. data/vendor/eigen/Eigen/Geometry +62 -0
  40. data/vendor/eigen/Eigen/Householder +30 -0
  41. data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
  42. data/vendor/eigen/Eigen/Jacobi +33 -0
  43. data/vendor/eigen/Eigen/LU +50 -0
  44. data/vendor/eigen/Eigen/MetisSupport +35 -0
  45. data/vendor/eigen/Eigen/OrderingMethods +73 -0
  46. data/vendor/eigen/Eigen/PaStiXSupport +48 -0
  47. data/vendor/eigen/Eigen/PardisoSupport +35 -0
  48. data/vendor/eigen/Eigen/QR +51 -0
  49. data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
  50. data/vendor/eigen/Eigen/SPQRSupport +34 -0
  51. data/vendor/eigen/Eigen/SVD +51 -0
  52. data/vendor/eigen/Eigen/Sparse +36 -0
  53. data/vendor/eigen/Eigen/SparseCholesky +45 -0
  54. data/vendor/eigen/Eigen/SparseCore +69 -0
  55. data/vendor/eigen/Eigen/SparseLU +46 -0
  56. data/vendor/eigen/Eigen/SparseQR +37 -0
  57. data/vendor/eigen/Eigen/StdDeque +27 -0
  58. data/vendor/eigen/Eigen/StdList +26 -0
  59. data/vendor/eigen/Eigen/StdVector +27 -0
  60. data/vendor/eigen/Eigen/SuperLUSupport +64 -0
  61. data/vendor/eigen/Eigen/UmfPackSupport +40 -0
  62. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
  63. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
  64. data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  65. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
  66. data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
  67. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
  68. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
  69. data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
  70. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
  71. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
  72. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
  73. data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
  74. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
  75. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
  76. data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
  77. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
  78. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
  79. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
  80. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
  81. data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  82. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
  84. data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
  85. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
  86. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
  87. data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
  88. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
  89. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
  90. data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
  91. data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
  92. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  93. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
  94. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
  95. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
  96. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
  97. data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
  98. data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
  99. data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
  100. data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
  101. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
  102. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
  103. data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
  104. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
  105. data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
  106. data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
  107. data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
  108. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
  109. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
  110. data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
  111. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
  112. data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
  113. data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
  114. data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
  115. data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
  116. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
  117. data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
  118. data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
  119. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
  120. data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  121. data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
  122. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
  123. data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
  124. data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
  125. data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
  126. data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
  127. data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
  128. data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
  129. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
  130. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
  131. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
  132. data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
  133. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
  134. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
  135. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
  136. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
  137. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
  138. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
  139. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
  140. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
  141. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
  142. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
  143. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
  145. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
  146. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
  148. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
  149. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
  153. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
  154. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
  156. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
  160. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
  161. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
  162. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
  163. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
  164. data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  165. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
  166. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
  167. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
  168. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
  169. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  170. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
  171. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
  172. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  173. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
  174. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
  175. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
  176. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
  177. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  178. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  179. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  180. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
  181. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
  182. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  183. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  184. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
  185. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
  186. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
  187. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
  188. data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
  189. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
  190. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  191. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
  192. data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
  193. data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
  194. data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
  195. data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
  196. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
  197. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
  198. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
  199. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  200. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
  201. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  202. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  203. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  204. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  205. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  206. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  207. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
  208. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
  209. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  210. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
  211. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  212. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
  213. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
  214. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
  215. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
  216. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
  217. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
  218. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
  219. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  220. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
  221. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
  222. data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
  223. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
  224. data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
  225. data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
  226. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
  227. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
  228. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
  229. data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
  230. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
  231. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  232. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
  233. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
  234. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
  235. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
  236. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
  237. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
  238. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
  239. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
  240. data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
  241. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
  242. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
  243. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
  244. data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  245. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
  246. data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  247. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
  248. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
  249. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
  250. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  251. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
  252. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
  253. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  254. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
  255. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
  256. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
  257. data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  258. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
  259. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
  260. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
  261. data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  262. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
  263. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  264. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
  265. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  266. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
  267. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
  268. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  269. data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  270. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
  271. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
  272. data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  273. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
  274. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
  275. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
  276. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
  277. data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  278. data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
  279. data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  280. data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
  281. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
  282. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
  283. data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  284. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
  285. data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
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  295. data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
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  299. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  300. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
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  324. data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
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  346. data/vendor/tomotopy/README.kr.rst +375 -0
  347. data/vendor/tomotopy/README.rst +382 -0
  348. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
  349. data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
  350. data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
  351. data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
  352. data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
  353. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
  354. data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
  355. data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
  356. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
  357. data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
  358. data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
  359. data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
  360. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
  361. data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
  362. data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
  363. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
  364. data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
  365. data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
  366. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
  367. data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
  368. data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
  369. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
  370. data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
  371. data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
  372. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
  373. data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
  374. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
  375. data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
  376. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
  377. data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
  378. data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
  379. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
  380. data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
  381. data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
  382. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
  383. data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
  384. data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
  385. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
  386. data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
  387. data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
  388. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
  389. data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
  390. data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
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  392. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
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  396. data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
  397. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
  398. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
  399. data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
  400. data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
  401. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
  402. data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
  403. data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
  404. data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
  405. data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
  406. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
  407. data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
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  412. data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
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  414. data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
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  416. data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
  417. data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
  418. data/vendor/tomotopy/src/Utils/text.hpp +49 -0
  419. data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
  420. metadata +531 -0
@@ -0,0 +1,374 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008-2009 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ // Copyright (C) 2010 Jitse Niesen <jitse@maths.leeds.ac.uk>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_HESSENBERGDECOMPOSITION_H
12
+ #define EIGEN_HESSENBERGDECOMPOSITION_H
13
+
14
+ namespace Eigen {
15
+
16
+ namespace internal {
17
+
18
+ template<typename MatrixType> struct HessenbergDecompositionMatrixHReturnType;
19
+ template<typename MatrixType>
20
+ struct traits<HessenbergDecompositionMatrixHReturnType<MatrixType> >
21
+ {
22
+ typedef MatrixType ReturnType;
23
+ };
24
+
25
+ }
26
+
27
+ /** \eigenvalues_module \ingroup Eigenvalues_Module
28
+ *
29
+ *
30
+ * \class HessenbergDecomposition
31
+ *
32
+ * \brief Reduces a square matrix to Hessenberg form by an orthogonal similarity transformation
33
+ *
34
+ * \tparam _MatrixType the type of the matrix of which we are computing the Hessenberg decomposition
35
+ *
36
+ * This class performs an Hessenberg decomposition of a matrix \f$ A \f$. In
37
+ * the real case, the Hessenberg decomposition consists of an orthogonal
38
+ * matrix \f$ Q \f$ and a Hessenberg matrix \f$ H \f$ such that \f$ A = Q H
39
+ * Q^T \f$. An orthogonal matrix is a matrix whose inverse equals its
40
+ * transpose (\f$ Q^{-1} = Q^T \f$). A Hessenberg matrix has zeros below the
41
+ * subdiagonal, so it is almost upper triangular. The Hessenberg decomposition
42
+ * of a complex matrix is \f$ A = Q H Q^* \f$ with \f$ Q \f$ unitary (that is,
43
+ * \f$ Q^{-1} = Q^* \f$).
44
+ *
45
+ * Call the function compute() to compute the Hessenberg decomposition of a
46
+ * given matrix. Alternatively, you can use the
47
+ * HessenbergDecomposition(const MatrixType&) constructor which computes the
48
+ * Hessenberg decomposition at construction time. Once the decomposition is
49
+ * computed, you can use the matrixH() and matrixQ() functions to construct
50
+ * the matrices H and Q in the decomposition.
51
+ *
52
+ * The documentation for matrixH() contains an example of the typical use of
53
+ * this class.
54
+ *
55
+ * \sa class ComplexSchur, class Tridiagonalization, \ref QR_Module "QR Module"
56
+ */
57
+ template<typename _MatrixType> class HessenbergDecomposition
58
+ {
59
+ public:
60
+
61
+ /** \brief Synonym for the template parameter \p _MatrixType. */
62
+ typedef _MatrixType MatrixType;
63
+
64
+ enum {
65
+ Size = MatrixType::RowsAtCompileTime,
66
+ SizeMinusOne = Size == Dynamic ? Dynamic : Size - 1,
67
+ Options = MatrixType::Options,
68
+ MaxSize = MatrixType::MaxRowsAtCompileTime,
69
+ MaxSizeMinusOne = MaxSize == Dynamic ? Dynamic : MaxSize - 1
70
+ };
71
+
72
+ /** \brief Scalar type for matrices of type #MatrixType. */
73
+ typedef typename MatrixType::Scalar Scalar;
74
+ typedef Eigen::Index Index; ///< \deprecated since Eigen 3.3
75
+
76
+ /** \brief Type for vector of Householder coefficients.
77
+ *
78
+ * This is column vector with entries of type #Scalar. The length of the
79
+ * vector is one less than the size of #MatrixType, if it is a fixed-side
80
+ * type.
81
+ */
82
+ typedef Matrix<Scalar, SizeMinusOne, 1, Options & ~RowMajor, MaxSizeMinusOne, 1> CoeffVectorType;
83
+
84
+ /** \brief Return type of matrixQ() */
85
+ typedef HouseholderSequence<MatrixType,typename internal::remove_all<typename CoeffVectorType::ConjugateReturnType>::type> HouseholderSequenceType;
86
+
87
+ typedef internal::HessenbergDecompositionMatrixHReturnType<MatrixType> MatrixHReturnType;
88
+
89
+ /** \brief Default constructor; the decomposition will be computed later.
90
+ *
91
+ * \param [in] size The size of the matrix whose Hessenberg decomposition will be computed.
92
+ *
93
+ * The default constructor is useful in cases in which the user intends to
94
+ * perform decompositions via compute(). The \p size parameter is only
95
+ * used as a hint. It is not an error to give a wrong \p size, but it may
96
+ * impair performance.
97
+ *
98
+ * \sa compute() for an example.
99
+ */
100
+ explicit HessenbergDecomposition(Index size = Size==Dynamic ? 2 : Size)
101
+ : m_matrix(size,size),
102
+ m_temp(size),
103
+ m_isInitialized(false)
104
+ {
105
+ if(size>1)
106
+ m_hCoeffs.resize(size-1);
107
+ }
108
+
109
+ /** \brief Constructor; computes Hessenberg decomposition of given matrix.
110
+ *
111
+ * \param[in] matrix Square matrix whose Hessenberg decomposition is to be computed.
112
+ *
113
+ * This constructor calls compute() to compute the Hessenberg
114
+ * decomposition.
115
+ *
116
+ * \sa matrixH() for an example.
117
+ */
118
+ template<typename InputType>
119
+ explicit HessenbergDecomposition(const EigenBase<InputType>& matrix)
120
+ : m_matrix(matrix.derived()),
121
+ m_temp(matrix.rows()),
122
+ m_isInitialized(false)
123
+ {
124
+ if(matrix.rows()<2)
125
+ {
126
+ m_isInitialized = true;
127
+ return;
128
+ }
129
+ m_hCoeffs.resize(matrix.rows()-1,1);
130
+ _compute(m_matrix, m_hCoeffs, m_temp);
131
+ m_isInitialized = true;
132
+ }
133
+
134
+ /** \brief Computes Hessenberg decomposition of given matrix.
135
+ *
136
+ * \param[in] matrix Square matrix whose Hessenberg decomposition is to be computed.
137
+ * \returns Reference to \c *this
138
+ *
139
+ * The Hessenberg decomposition is computed by bringing the columns of the
140
+ * matrix successively in the required form using Householder reflections
141
+ * (see, e.g., Algorithm 7.4.2 in Golub \& Van Loan, <i>%Matrix
142
+ * Computations</i>). The cost is \f$ 10n^3/3 \f$ flops, where \f$ n \f$
143
+ * denotes the size of the given matrix.
144
+ *
145
+ * This method reuses of the allocated data in the HessenbergDecomposition
146
+ * object.
147
+ *
148
+ * Example: \include HessenbergDecomposition_compute.cpp
149
+ * Output: \verbinclude HessenbergDecomposition_compute.out
150
+ */
151
+ template<typename InputType>
152
+ HessenbergDecomposition& compute(const EigenBase<InputType>& matrix)
153
+ {
154
+ m_matrix = matrix.derived();
155
+ if(matrix.rows()<2)
156
+ {
157
+ m_isInitialized = true;
158
+ return *this;
159
+ }
160
+ m_hCoeffs.resize(matrix.rows()-1,1);
161
+ _compute(m_matrix, m_hCoeffs, m_temp);
162
+ m_isInitialized = true;
163
+ return *this;
164
+ }
165
+
166
+ /** \brief Returns the Householder coefficients.
167
+ *
168
+ * \returns a const reference to the vector of Householder coefficients
169
+ *
170
+ * \pre Either the constructor HessenbergDecomposition(const MatrixType&)
171
+ * or the member function compute(const MatrixType&) has been called
172
+ * before to compute the Hessenberg decomposition of a matrix.
173
+ *
174
+ * The Householder coefficients allow the reconstruction of the matrix
175
+ * \f$ Q \f$ in the Hessenberg decomposition from the packed data.
176
+ *
177
+ * \sa packedMatrix(), \ref Householder_Module "Householder module"
178
+ */
179
+ const CoeffVectorType& householderCoefficients() const
180
+ {
181
+ eigen_assert(m_isInitialized && "HessenbergDecomposition is not initialized.");
182
+ return m_hCoeffs;
183
+ }
184
+
185
+ /** \brief Returns the internal representation of the decomposition
186
+ *
187
+ * \returns a const reference to a matrix with the internal representation
188
+ * of the decomposition.
189
+ *
190
+ * \pre Either the constructor HessenbergDecomposition(const MatrixType&)
191
+ * or the member function compute(const MatrixType&) has been called
192
+ * before to compute the Hessenberg decomposition of a matrix.
193
+ *
194
+ * The returned matrix contains the following information:
195
+ * - the upper part and lower sub-diagonal represent the Hessenberg matrix H
196
+ * - the rest of the lower part contains the Householder vectors that, combined with
197
+ * Householder coefficients returned by householderCoefficients(),
198
+ * allows to reconstruct the matrix Q as
199
+ * \f$ Q = H_{N-1} \ldots H_1 H_0 \f$.
200
+ * Here, the matrices \f$ H_i \f$ are the Householder transformations
201
+ * \f$ H_i = (I - h_i v_i v_i^T) \f$
202
+ * where \f$ h_i \f$ is the \f$ i \f$th Householder coefficient and
203
+ * \f$ v_i \f$ is the Householder vector defined by
204
+ * \f$ v_i = [ 0, \ldots, 0, 1, M(i+2,i), \ldots, M(N-1,i) ]^T \f$
205
+ * with M the matrix returned by this function.
206
+ *
207
+ * See LAPACK for further details on this packed storage.
208
+ *
209
+ * Example: \include HessenbergDecomposition_packedMatrix.cpp
210
+ * Output: \verbinclude HessenbergDecomposition_packedMatrix.out
211
+ *
212
+ * \sa householderCoefficients()
213
+ */
214
+ const MatrixType& packedMatrix() const
215
+ {
216
+ eigen_assert(m_isInitialized && "HessenbergDecomposition is not initialized.");
217
+ return m_matrix;
218
+ }
219
+
220
+ /** \brief Reconstructs the orthogonal matrix Q in the decomposition
221
+ *
222
+ * \returns object representing the matrix Q
223
+ *
224
+ * \pre Either the constructor HessenbergDecomposition(const MatrixType&)
225
+ * or the member function compute(const MatrixType&) has been called
226
+ * before to compute the Hessenberg decomposition of a matrix.
227
+ *
228
+ * This function returns a light-weight object of template class
229
+ * HouseholderSequence. You can either apply it directly to a matrix or
230
+ * you can convert it to a matrix of type #MatrixType.
231
+ *
232
+ * \sa matrixH() for an example, class HouseholderSequence
233
+ */
234
+ HouseholderSequenceType matrixQ() const
235
+ {
236
+ eigen_assert(m_isInitialized && "HessenbergDecomposition is not initialized.");
237
+ return HouseholderSequenceType(m_matrix, m_hCoeffs.conjugate())
238
+ .setLength(m_matrix.rows() - 1)
239
+ .setShift(1);
240
+ }
241
+
242
+ /** \brief Constructs the Hessenberg matrix H in the decomposition
243
+ *
244
+ * \returns expression object representing the matrix H
245
+ *
246
+ * \pre Either the constructor HessenbergDecomposition(const MatrixType&)
247
+ * or the member function compute(const MatrixType&) has been called
248
+ * before to compute the Hessenberg decomposition of a matrix.
249
+ *
250
+ * The object returned by this function constructs the Hessenberg matrix H
251
+ * when it is assigned to a matrix or otherwise evaluated. The matrix H is
252
+ * constructed from the packed matrix as returned by packedMatrix(): The
253
+ * upper part (including the subdiagonal) of the packed matrix contains
254
+ * the matrix H. It may sometimes be better to directly use the packed
255
+ * matrix instead of constructing the matrix H.
256
+ *
257
+ * Example: \include HessenbergDecomposition_matrixH.cpp
258
+ * Output: \verbinclude HessenbergDecomposition_matrixH.out
259
+ *
260
+ * \sa matrixQ(), packedMatrix()
261
+ */
262
+ MatrixHReturnType matrixH() const
263
+ {
264
+ eigen_assert(m_isInitialized && "HessenbergDecomposition is not initialized.");
265
+ return MatrixHReturnType(*this);
266
+ }
267
+
268
+ private:
269
+
270
+ typedef Matrix<Scalar, 1, Size, Options | RowMajor, 1, MaxSize> VectorType;
271
+ typedef typename NumTraits<Scalar>::Real RealScalar;
272
+ static void _compute(MatrixType& matA, CoeffVectorType& hCoeffs, VectorType& temp);
273
+
274
+ protected:
275
+ MatrixType m_matrix;
276
+ CoeffVectorType m_hCoeffs;
277
+ VectorType m_temp;
278
+ bool m_isInitialized;
279
+ };
280
+
281
+ /** \internal
282
+ * Performs a tridiagonal decomposition of \a matA in place.
283
+ *
284
+ * \param matA the input selfadjoint matrix
285
+ * \param hCoeffs returned Householder coefficients
286
+ *
287
+ * The result is written in the lower triangular part of \a matA.
288
+ *
289
+ * Implemented from Golub's "%Matrix Computations", algorithm 8.3.1.
290
+ *
291
+ * \sa packedMatrix()
292
+ */
293
+ template<typename MatrixType>
294
+ void HessenbergDecomposition<MatrixType>::_compute(MatrixType& matA, CoeffVectorType& hCoeffs, VectorType& temp)
295
+ {
296
+ eigen_assert(matA.rows()==matA.cols());
297
+ Index n = matA.rows();
298
+ temp.resize(n);
299
+ for (Index i = 0; i<n-1; ++i)
300
+ {
301
+ // let's consider the vector v = i-th column starting at position i+1
302
+ Index remainingSize = n-i-1;
303
+ RealScalar beta;
304
+ Scalar h;
305
+ matA.col(i).tail(remainingSize).makeHouseholderInPlace(h, beta);
306
+ matA.col(i).coeffRef(i+1) = beta;
307
+ hCoeffs.coeffRef(i) = h;
308
+
309
+ // Apply similarity transformation to remaining columns,
310
+ // i.e., compute A = H A H'
311
+
312
+ // A = H A
313
+ matA.bottomRightCorner(remainingSize, remainingSize)
314
+ .applyHouseholderOnTheLeft(matA.col(i).tail(remainingSize-1), h, &temp.coeffRef(0));
315
+
316
+ // A = A H'
317
+ matA.rightCols(remainingSize)
318
+ .applyHouseholderOnTheRight(matA.col(i).tail(remainingSize-1).conjugate(), numext::conj(h), &temp.coeffRef(0));
319
+ }
320
+ }
321
+
322
+ namespace internal {
323
+
324
+ /** \eigenvalues_module \ingroup Eigenvalues_Module
325
+ *
326
+ *
327
+ * \brief Expression type for return value of HessenbergDecomposition::matrixH()
328
+ *
329
+ * \tparam MatrixType type of matrix in the Hessenberg decomposition
330
+ *
331
+ * Objects of this type represent the Hessenberg matrix in the Hessenberg
332
+ * decomposition of some matrix. The object holds a reference to the
333
+ * HessenbergDecomposition class until the it is assigned or evaluated for
334
+ * some other reason (the reference should remain valid during the life time
335
+ * of this object). This class is the return type of
336
+ * HessenbergDecomposition::matrixH(); there is probably no other use for this
337
+ * class.
338
+ */
339
+ template<typename MatrixType> struct HessenbergDecompositionMatrixHReturnType
340
+ : public ReturnByValue<HessenbergDecompositionMatrixHReturnType<MatrixType> >
341
+ {
342
+ public:
343
+ /** \brief Constructor.
344
+ *
345
+ * \param[in] hess Hessenberg decomposition
346
+ */
347
+ HessenbergDecompositionMatrixHReturnType(const HessenbergDecomposition<MatrixType>& hess) : m_hess(hess) { }
348
+
349
+ /** \brief Hessenberg matrix in decomposition.
350
+ *
351
+ * \param[out] result Hessenberg matrix in decomposition \p hess which
352
+ * was passed to the constructor
353
+ */
354
+ template <typename ResultType>
355
+ inline void evalTo(ResultType& result) const
356
+ {
357
+ result = m_hess.packedMatrix();
358
+ Index n = result.rows();
359
+ if (n>2)
360
+ result.bottomLeftCorner(n-2, n-2).template triangularView<Lower>().setZero();
361
+ }
362
+
363
+ Index rows() const { return m_hess.packedMatrix().rows(); }
364
+ Index cols() const { return m_hess.packedMatrix().cols(); }
365
+
366
+ protected:
367
+ const HessenbergDecomposition<MatrixType>& m_hess;
368
+ };
369
+
370
+ } // end namespace internal
371
+
372
+ } // end namespace Eigen
373
+
374
+ #endif // EIGEN_HESSENBERGDECOMPOSITION_H
@@ -0,0 +1,158 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ // Copyright (C) 2010 Jitse Niesen <jitse@maths.leeds.ac.uk>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_MATRIXBASEEIGENVALUES_H
12
+ #define EIGEN_MATRIXBASEEIGENVALUES_H
13
+
14
+ namespace Eigen {
15
+
16
+ namespace internal {
17
+
18
+ template<typename Derived, bool IsComplex>
19
+ struct eigenvalues_selector
20
+ {
21
+ // this is the implementation for the case IsComplex = true
22
+ static inline typename MatrixBase<Derived>::EigenvaluesReturnType const
23
+ run(const MatrixBase<Derived>& m)
24
+ {
25
+ typedef typename Derived::PlainObject PlainObject;
26
+ PlainObject m_eval(m);
27
+ return ComplexEigenSolver<PlainObject>(m_eval, false).eigenvalues();
28
+ }
29
+ };
30
+
31
+ template<typename Derived>
32
+ struct eigenvalues_selector<Derived, false>
33
+ {
34
+ static inline typename MatrixBase<Derived>::EigenvaluesReturnType const
35
+ run(const MatrixBase<Derived>& m)
36
+ {
37
+ typedef typename Derived::PlainObject PlainObject;
38
+ PlainObject m_eval(m);
39
+ return EigenSolver<PlainObject>(m_eval, false).eigenvalues();
40
+ }
41
+ };
42
+
43
+ } // end namespace internal
44
+
45
+ /** \brief Computes the eigenvalues of a matrix
46
+ * \returns Column vector containing the eigenvalues.
47
+ *
48
+ * \eigenvalues_module
49
+ * This function computes the eigenvalues with the help of the EigenSolver
50
+ * class (for real matrices) or the ComplexEigenSolver class (for complex
51
+ * matrices).
52
+ *
53
+ * The eigenvalues are repeated according to their algebraic multiplicity,
54
+ * so there are as many eigenvalues as rows in the matrix.
55
+ *
56
+ * The SelfAdjointView class provides a better algorithm for selfadjoint
57
+ * matrices.
58
+ *
59
+ * Example: \include MatrixBase_eigenvalues.cpp
60
+ * Output: \verbinclude MatrixBase_eigenvalues.out
61
+ *
62
+ * \sa EigenSolver::eigenvalues(), ComplexEigenSolver::eigenvalues(),
63
+ * SelfAdjointView::eigenvalues()
64
+ */
65
+ template<typename Derived>
66
+ inline typename MatrixBase<Derived>::EigenvaluesReturnType
67
+ MatrixBase<Derived>::eigenvalues() const
68
+ {
69
+ return internal::eigenvalues_selector<Derived, NumTraits<Scalar>::IsComplex>::run(derived());
70
+ }
71
+
72
+ /** \brief Computes the eigenvalues of a matrix
73
+ * \returns Column vector containing the eigenvalues.
74
+ *
75
+ * \eigenvalues_module
76
+ * This function computes the eigenvalues with the help of the
77
+ * SelfAdjointEigenSolver class. The eigenvalues are repeated according to
78
+ * their algebraic multiplicity, so there are as many eigenvalues as rows in
79
+ * the matrix.
80
+ *
81
+ * Example: \include SelfAdjointView_eigenvalues.cpp
82
+ * Output: \verbinclude SelfAdjointView_eigenvalues.out
83
+ *
84
+ * \sa SelfAdjointEigenSolver::eigenvalues(), MatrixBase::eigenvalues()
85
+ */
86
+ template<typename MatrixType, unsigned int UpLo>
87
+ inline typename SelfAdjointView<MatrixType, UpLo>::EigenvaluesReturnType
88
+ SelfAdjointView<MatrixType, UpLo>::eigenvalues() const
89
+ {
90
+ PlainObject thisAsMatrix(*this);
91
+ return SelfAdjointEigenSolver<PlainObject>(thisAsMatrix, false).eigenvalues();
92
+ }
93
+
94
+
95
+
96
+ /** \brief Computes the L2 operator norm
97
+ * \returns Operator norm of the matrix.
98
+ *
99
+ * \eigenvalues_module
100
+ * This function computes the L2 operator norm of a matrix, which is also
101
+ * known as the spectral norm. The norm of a matrix \f$ A \f$ is defined to be
102
+ * \f[ \|A\|_2 = \max_x \frac{\|Ax\|_2}{\|x\|_2} \f]
103
+ * where the maximum is over all vectors and the norm on the right is the
104
+ * Euclidean vector norm. The norm equals the largest singular value, which is
105
+ * the square root of the largest eigenvalue of the positive semi-definite
106
+ * matrix \f$ A^*A \f$.
107
+ *
108
+ * The current implementation uses the eigenvalues of \f$ A^*A \f$, as computed
109
+ * by SelfAdjointView::eigenvalues(), to compute the operator norm of a
110
+ * matrix. The SelfAdjointView class provides a better algorithm for
111
+ * selfadjoint matrices.
112
+ *
113
+ * Example: \include MatrixBase_operatorNorm.cpp
114
+ * Output: \verbinclude MatrixBase_operatorNorm.out
115
+ *
116
+ * \sa SelfAdjointView::eigenvalues(), SelfAdjointView::operatorNorm()
117
+ */
118
+ template<typename Derived>
119
+ inline typename MatrixBase<Derived>::RealScalar
120
+ MatrixBase<Derived>::operatorNorm() const
121
+ {
122
+ using std::sqrt;
123
+ typename Derived::PlainObject m_eval(derived());
124
+ // FIXME if it is really guaranteed that the eigenvalues are already sorted,
125
+ // then we don't need to compute a maxCoeff() here, comparing the 1st and last ones is enough.
126
+ return sqrt((m_eval*m_eval.adjoint())
127
+ .eval()
128
+ .template selfadjointView<Lower>()
129
+ .eigenvalues()
130
+ .maxCoeff()
131
+ );
132
+ }
133
+
134
+ /** \brief Computes the L2 operator norm
135
+ * \returns Operator norm of the matrix.
136
+ *
137
+ * \eigenvalues_module
138
+ * This function computes the L2 operator norm of a self-adjoint matrix. For a
139
+ * self-adjoint matrix, the operator norm is the largest eigenvalue.
140
+ *
141
+ * The current implementation uses the eigenvalues of the matrix, as computed
142
+ * by eigenvalues(), to compute the operator norm of the matrix.
143
+ *
144
+ * Example: \include SelfAdjointView_operatorNorm.cpp
145
+ * Output: \verbinclude SelfAdjointView_operatorNorm.out
146
+ *
147
+ * \sa eigenvalues(), MatrixBase::operatorNorm()
148
+ */
149
+ template<typename MatrixType, unsigned int UpLo>
150
+ inline typename SelfAdjointView<MatrixType, UpLo>::RealScalar
151
+ SelfAdjointView<MatrixType, UpLo>::operatorNorm() const
152
+ {
153
+ return eigenvalues().cwiseAbs().maxCoeff();
154
+ }
155
+
156
+ } // end namespace Eigen
157
+
158
+ #endif