tomoto 0.1.0

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Files changed (420) hide show
  1. checksums.yaml +7 -0
  2. data/CHANGELOG.md +3 -0
  3. data/LICENSE.txt +22 -0
  4. data/README.md +123 -0
  5. data/ext/tomoto/ext.cpp +245 -0
  6. data/ext/tomoto/extconf.rb +28 -0
  7. data/lib/tomoto.rb +12 -0
  8. data/lib/tomoto/ct.rb +11 -0
  9. data/lib/tomoto/hdp.rb +11 -0
  10. data/lib/tomoto/lda.rb +67 -0
  11. data/lib/tomoto/version.rb +3 -0
  12. data/vendor/EigenRand/EigenRand/Core.h +1139 -0
  13. data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
  14. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
  15. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
  16. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
  17. data/vendor/EigenRand/EigenRand/EigenRand +19 -0
  18. data/vendor/EigenRand/EigenRand/Macro.h +24 -0
  19. data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
  20. data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
  21. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
  22. data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
  23. data/vendor/EigenRand/EigenRand/doc.h +220 -0
  24. data/vendor/EigenRand/LICENSE +21 -0
  25. data/vendor/EigenRand/README.md +288 -0
  26. data/vendor/eigen/COPYING.BSD +26 -0
  27. data/vendor/eigen/COPYING.GPL +674 -0
  28. data/vendor/eigen/COPYING.LGPL +502 -0
  29. data/vendor/eigen/COPYING.MINPACK +52 -0
  30. data/vendor/eigen/COPYING.MPL2 +373 -0
  31. data/vendor/eigen/COPYING.README +18 -0
  32. data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
  33. data/vendor/eigen/Eigen/Cholesky +46 -0
  34. data/vendor/eigen/Eigen/CholmodSupport +48 -0
  35. data/vendor/eigen/Eigen/Core +537 -0
  36. data/vendor/eigen/Eigen/Dense +7 -0
  37. data/vendor/eigen/Eigen/Eigen +2 -0
  38. data/vendor/eigen/Eigen/Eigenvalues +61 -0
  39. data/vendor/eigen/Eigen/Geometry +62 -0
  40. data/vendor/eigen/Eigen/Householder +30 -0
  41. data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
  42. data/vendor/eigen/Eigen/Jacobi +33 -0
  43. data/vendor/eigen/Eigen/LU +50 -0
  44. data/vendor/eigen/Eigen/MetisSupport +35 -0
  45. data/vendor/eigen/Eigen/OrderingMethods +73 -0
  46. data/vendor/eigen/Eigen/PaStiXSupport +48 -0
  47. data/vendor/eigen/Eigen/PardisoSupport +35 -0
  48. data/vendor/eigen/Eigen/QR +51 -0
  49. data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
  50. data/vendor/eigen/Eigen/SPQRSupport +34 -0
  51. data/vendor/eigen/Eigen/SVD +51 -0
  52. data/vendor/eigen/Eigen/Sparse +36 -0
  53. data/vendor/eigen/Eigen/SparseCholesky +45 -0
  54. data/vendor/eigen/Eigen/SparseCore +69 -0
  55. data/vendor/eigen/Eigen/SparseLU +46 -0
  56. data/vendor/eigen/Eigen/SparseQR +37 -0
  57. data/vendor/eigen/Eigen/StdDeque +27 -0
  58. data/vendor/eigen/Eigen/StdList +26 -0
  59. data/vendor/eigen/Eigen/StdVector +27 -0
  60. data/vendor/eigen/Eigen/SuperLUSupport +64 -0
  61. data/vendor/eigen/Eigen/UmfPackSupport +40 -0
  62. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
  63. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
  64. data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  65. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
  66. data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
  67. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
  68. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
  69. data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
  70. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
  71. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
  72. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
  73. data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
  74. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
  75. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
  76. data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
  77. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
  78. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
  79. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
  80. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
  81. data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  82. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
  84. data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
  85. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
  86. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
  87. data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
  88. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
  89. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
  90. data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
  91. data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
  92. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  93. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
  94. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
  95. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
  96. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
  97. data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
  98. data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
  99. data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
  100. data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
  101. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
  102. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
  103. data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
  104. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
  105. data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
  106. data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
  107. data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
  108. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
  109. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
  110. data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
  111. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
  112. data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
  113. data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
  114. data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
  115. data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
  116. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
  117. data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
  118. data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
  119. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
  120. data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  121. data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
  122. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
  123. data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
  124. data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
  125. data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
  126. data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
  127. data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
  128. data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
  129. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
  130. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
  131. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
  132. data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
  133. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
  134. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
  135. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
  136. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
  137. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
  138. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
  139. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
  140. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
  141. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
  142. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
  143. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
  145. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
  146. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
  148. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
  149. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
  153. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
  154. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
  156. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
  160. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
  161. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
  162. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
  163. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
  164. data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  165. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
  166. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
  167. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
  168. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
  169. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  170. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
  171. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
  172. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  173. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
  174. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
  175. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
  176. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
  177. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  178. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  179. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  180. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
  181. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
  182. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  183. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  184. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
  185. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
  186. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
  187. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
  188. data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
  189. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
  190. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  191. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
  192. data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
  193. data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
  194. data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
  195. data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
  196. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
  197. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
  198. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
  199. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  200. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
  201. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  202. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  203. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  204. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  205. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  206. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  207. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
  208. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
  209. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  210. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
  211. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  212. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
  213. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
  214. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
  215. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
  216. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
  217. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
  218. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
  219. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  220. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
  221. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
  222. data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
  223. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
  224. data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
  225. data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
  226. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
  227. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
  228. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
  229. data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
  230. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
  231. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  232. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
  233. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
  234. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
  235. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
  236. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
  237. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
  238. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
  239. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
  240. data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
  241. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
  242. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
  243. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
  244. data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  245. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
  246. data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  247. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
  248. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
  249. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
  250. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  251. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
  252. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
  253. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  254. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
  255. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
  256. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
  257. data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  258. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
  259. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
  260. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
  261. data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  262. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
  263. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  264. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
  265. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  266. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
  267. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
  268. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  269. data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  270. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
  271. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
  272. data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  273. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
  274. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
  275. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
  276. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
  277. data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  278. data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
  279. data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  280. data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
  281. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
  282. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
  283. data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  284. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
  285. data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
  295. data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  296. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
  297. data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  298. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  299. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  300. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  307. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  308. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  309. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  310. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  311. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  312. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  313. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
  314. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +126 -0
  315. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
  316. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
  317. data/vendor/eigen/Eigen/src/StlSupport/details.h +84 -0
  318. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
  319. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
  320. data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
  321. data/vendor/eigen/Eigen/src/misc/Kernel.h +79 -0
  322. data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
  323. data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
  324. data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
  325. data/vendor/eigen/Eigen/src/misc/lapacke.h +16291 -0
  326. data/vendor/eigen/Eigen/src/misc/lapacke_mangling.h +17 -0
  327. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +332 -0
  328. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
  329. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
  330. data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  331. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +163 -0
  332. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  333. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
  334. data/vendor/eigen/README.md +3 -0
  335. data/vendor/eigen/bench/README.txt +55 -0
  336. data/vendor/eigen/bench/btl/COPYING +340 -0
  337. data/vendor/eigen/bench/btl/README +154 -0
  338. data/vendor/eigen/bench/tensors/README +21 -0
  339. data/vendor/eigen/blas/README.txt +6 -0
  340. data/vendor/eigen/demos/mandelbrot/README +10 -0
  341. data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
  342. data/vendor/eigen/demos/opengl/README +13 -0
  343. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
  344. data/vendor/eigen/unsupported/README.txt +50 -0
  345. data/vendor/tomotopy/LICENSE +21 -0
  346. data/vendor/tomotopy/README.kr.rst +375 -0
  347. data/vendor/tomotopy/README.rst +382 -0
  348. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
  349. data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
  350. data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
  351. data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
  352. data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
  353. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
  354. data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
  355. data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
  356. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
  357. data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
  358. data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
  359. data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
  360. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
  361. data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
  362. data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
  363. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
  364. data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
  365. data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
  366. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
  367. data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
  368. data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
  369. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
  370. data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
  371. data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
  372. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
  373. data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
  374. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
  375. data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
  376. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
  377. data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
  378. data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
  379. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
  380. data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
  381. data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
  382. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
  383. data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
  384. data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
  385. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
  386. data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
  387. data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
  388. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
  389. data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
  390. data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
  391. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
  392. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
  393. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +169 -0
  394. data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
  395. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
  396. data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
  397. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
  398. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
  399. data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
  400. data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
  401. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
  402. data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
  403. data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
  404. data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
  405. data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
  406. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
  407. data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
  408. data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
  409. data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
  410. data/vendor/tomotopy/src/Utils/exception.h +28 -0
  411. data/vendor/tomotopy/src/Utils/math.h +281 -0
  412. data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
  413. data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
  414. data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
  415. data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
  416. data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
  417. data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
  418. data/vendor/tomotopy/src/Utils/text.hpp +49 -0
  419. data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
  420. metadata +531 -0
@@ -0,0 +1,171 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2007-2010 Benoit Jacob <jacob.benoit.1@gmail.com>
5
+ // Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_MAP_H
12
+ #define EIGEN_MAP_H
13
+
14
+ namespace Eigen {
15
+
16
+ namespace internal {
17
+ template<typename PlainObjectType, int MapOptions, typename StrideType>
18
+ struct traits<Map<PlainObjectType, MapOptions, StrideType> >
19
+ : public traits<PlainObjectType>
20
+ {
21
+ typedef traits<PlainObjectType> TraitsBase;
22
+ enum {
23
+ PlainObjectTypeInnerSize = ((traits<PlainObjectType>::Flags&RowMajorBit)==RowMajorBit)
24
+ ? PlainObjectType::ColsAtCompileTime
25
+ : PlainObjectType::RowsAtCompileTime,
26
+
27
+ InnerStrideAtCompileTime = StrideType::InnerStrideAtCompileTime == 0
28
+ ? int(PlainObjectType::InnerStrideAtCompileTime)
29
+ : int(StrideType::InnerStrideAtCompileTime),
30
+ OuterStrideAtCompileTime = StrideType::OuterStrideAtCompileTime == 0
31
+ ? (InnerStrideAtCompileTime==Dynamic || PlainObjectTypeInnerSize==Dynamic
32
+ ? Dynamic
33
+ : int(InnerStrideAtCompileTime) * int(PlainObjectTypeInnerSize))
34
+ : int(StrideType::OuterStrideAtCompileTime),
35
+ Alignment = int(MapOptions)&int(AlignedMask),
36
+ Flags0 = TraitsBase::Flags & (~NestByRefBit),
37
+ Flags = is_lvalue<PlainObjectType>::value ? int(Flags0) : (int(Flags0) & ~LvalueBit)
38
+ };
39
+ private:
40
+ enum { Options }; // Expressions don't have Options
41
+ };
42
+ }
43
+
44
+ /** \class Map
45
+ * \ingroup Core_Module
46
+ *
47
+ * \brief A matrix or vector expression mapping an existing array of data.
48
+ *
49
+ * \tparam PlainObjectType the equivalent matrix type of the mapped data
50
+ * \tparam MapOptions specifies the pointer alignment in bytes. It can be: \c #Aligned128, , \c #Aligned64, \c #Aligned32, \c #Aligned16, \c #Aligned8 or \c #Unaligned.
51
+ * The default is \c #Unaligned.
52
+ * \tparam StrideType optionally specifies strides. By default, Map assumes the memory layout
53
+ * of an ordinary, contiguous array. This can be overridden by specifying strides.
54
+ * The type passed here must be a specialization of the Stride template, see examples below.
55
+ *
56
+ * This class represents a matrix or vector expression mapping an existing array of data.
57
+ * It can be used to let Eigen interface without any overhead with non-Eigen data structures,
58
+ * such as plain C arrays or structures from other libraries. By default, it assumes that the
59
+ * data is laid out contiguously in memory. You can however override this by explicitly specifying
60
+ * inner and outer strides.
61
+ *
62
+ * Here's an example of simply mapping a contiguous array as a \ref TopicStorageOrders "column-major" matrix:
63
+ * \include Map_simple.cpp
64
+ * Output: \verbinclude Map_simple.out
65
+ *
66
+ * If you need to map non-contiguous arrays, you can do so by specifying strides:
67
+ *
68
+ * Here's an example of mapping an array as a vector, specifying an inner stride, that is, the pointer
69
+ * increment between two consecutive coefficients. Here, we're specifying the inner stride as a compile-time
70
+ * fixed value.
71
+ * \include Map_inner_stride.cpp
72
+ * Output: \verbinclude Map_inner_stride.out
73
+ *
74
+ * Here's an example of mapping an array while specifying an outer stride. Here, since we're mapping
75
+ * as a column-major matrix, 'outer stride' means the pointer increment between two consecutive columns.
76
+ * Here, we're specifying the outer stride as a runtime parameter. Note that here \c OuterStride<> is
77
+ * a short version of \c OuterStride<Dynamic> because the default template parameter of OuterStride
78
+ * is \c Dynamic
79
+ * \include Map_outer_stride.cpp
80
+ * Output: \verbinclude Map_outer_stride.out
81
+ *
82
+ * For more details and for an example of specifying both an inner and an outer stride, see class Stride.
83
+ *
84
+ * \b Tip: to change the array of data mapped by a Map object, you can use the C++
85
+ * placement new syntax:
86
+ *
87
+ * Example: \include Map_placement_new.cpp
88
+ * Output: \verbinclude Map_placement_new.out
89
+ *
90
+ * This class is the return type of PlainObjectBase::Map() but can also be used directly.
91
+ *
92
+ * \sa PlainObjectBase::Map(), \ref TopicStorageOrders
93
+ */
94
+ template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
95
+ : public MapBase<Map<PlainObjectType, MapOptions, StrideType> >
96
+ {
97
+ public:
98
+
99
+ typedef MapBase<Map> Base;
100
+ EIGEN_DENSE_PUBLIC_INTERFACE(Map)
101
+
102
+ typedef typename Base::PointerType PointerType;
103
+ typedef PointerType PointerArgType;
104
+ EIGEN_DEVICE_FUNC
105
+ inline PointerType cast_to_pointer_type(PointerArgType ptr) { return ptr; }
106
+
107
+ EIGEN_DEVICE_FUNC
108
+ inline Index innerStride() const
109
+ {
110
+ return StrideType::InnerStrideAtCompileTime != 0 ? m_stride.inner() : 1;
111
+ }
112
+
113
+ EIGEN_DEVICE_FUNC
114
+ inline Index outerStride() const
115
+ {
116
+ return int(StrideType::OuterStrideAtCompileTime) != 0 ? m_stride.outer()
117
+ : int(internal::traits<Map>::OuterStrideAtCompileTime) != Dynamic ? Index(internal::traits<Map>::OuterStrideAtCompileTime)
118
+ : IsVectorAtCompileTime ? (this->size() * innerStride())
119
+ : (int(Flags)&RowMajorBit) ? (this->cols() * innerStride())
120
+ : (this->rows() * innerStride());
121
+ }
122
+
123
+ /** Constructor in the fixed-size case.
124
+ *
125
+ * \param dataPtr pointer to the array to map
126
+ * \param stride optional Stride object, passing the strides.
127
+ */
128
+ EIGEN_DEVICE_FUNC
129
+ explicit inline Map(PointerArgType dataPtr, const StrideType& stride = StrideType())
130
+ : Base(cast_to_pointer_type(dataPtr)), m_stride(stride)
131
+ {
132
+ PlainObjectType::Base::_check_template_params();
133
+ }
134
+
135
+ /** Constructor in the dynamic-size vector case.
136
+ *
137
+ * \param dataPtr pointer to the array to map
138
+ * \param size the size of the vector expression
139
+ * \param stride optional Stride object, passing the strides.
140
+ */
141
+ EIGEN_DEVICE_FUNC
142
+ inline Map(PointerArgType dataPtr, Index size, const StrideType& stride = StrideType())
143
+ : Base(cast_to_pointer_type(dataPtr), size), m_stride(stride)
144
+ {
145
+ PlainObjectType::Base::_check_template_params();
146
+ }
147
+
148
+ /** Constructor in the dynamic-size matrix case.
149
+ *
150
+ * \param dataPtr pointer to the array to map
151
+ * \param rows the number of rows of the matrix expression
152
+ * \param cols the number of columns of the matrix expression
153
+ * \param stride optional Stride object, passing the strides.
154
+ */
155
+ EIGEN_DEVICE_FUNC
156
+ inline Map(PointerArgType dataPtr, Index rows, Index cols, const StrideType& stride = StrideType())
157
+ : Base(cast_to_pointer_type(dataPtr), rows, cols), m_stride(stride)
158
+ {
159
+ PlainObjectType::Base::_check_template_params();
160
+ }
161
+
162
+ EIGEN_INHERIT_ASSIGNMENT_OPERATORS(Map)
163
+
164
+ protected:
165
+ StrideType m_stride;
166
+ };
167
+
168
+
169
+ } // end namespace Eigen
170
+
171
+ #endif // EIGEN_MAP_H
@@ -0,0 +1,303 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2007-2010 Benoit Jacob <jacob.benoit.1@gmail.com>
5
+ // Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_MAPBASE_H
12
+ #define EIGEN_MAPBASE_H
13
+
14
+ #define EIGEN_STATIC_ASSERT_INDEX_BASED_ACCESS(Derived) \
15
+ EIGEN_STATIC_ASSERT((int(internal::evaluator<Derived>::Flags) & LinearAccessBit) || Derived::IsVectorAtCompileTime, \
16
+ YOU_ARE_TRYING_TO_USE_AN_INDEX_BASED_ACCESSOR_ON_AN_EXPRESSION_THAT_DOES_NOT_SUPPORT_THAT)
17
+
18
+ namespace Eigen {
19
+
20
+ /** \ingroup Core_Module
21
+ *
22
+ * \brief Base class for dense Map and Block expression with direct access
23
+ *
24
+ * This base class provides the const low-level accessors (e.g. coeff, coeffRef) of dense
25
+ * Map and Block objects with direct access.
26
+ * Typical users do not have to directly deal with this class.
27
+ *
28
+ * This class can be extended by through the macro plugin \c EIGEN_MAPBASE_PLUGIN.
29
+ * See \link TopicCustomizing_Plugins customizing Eigen \endlink for details.
30
+ *
31
+ * The \c Derived class has to provide the following two methods describing the memory layout:
32
+ * \code Index innerStride() const; \endcode
33
+ * \code Index outerStride() const; \endcode
34
+ *
35
+ * \sa class Map, class Block
36
+ */
37
+ template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
38
+ : public internal::dense_xpr_base<Derived>::type
39
+ {
40
+ public:
41
+
42
+ typedef typename internal::dense_xpr_base<Derived>::type Base;
43
+ enum {
44
+ RowsAtCompileTime = internal::traits<Derived>::RowsAtCompileTime,
45
+ ColsAtCompileTime = internal::traits<Derived>::ColsAtCompileTime,
46
+ InnerStrideAtCompileTime = internal::traits<Derived>::InnerStrideAtCompileTime,
47
+ SizeAtCompileTime = Base::SizeAtCompileTime
48
+ };
49
+
50
+ typedef typename internal::traits<Derived>::StorageKind StorageKind;
51
+ typedef typename internal::traits<Derived>::Scalar Scalar;
52
+ typedef typename internal::packet_traits<Scalar>::type PacketScalar;
53
+ typedef typename NumTraits<Scalar>::Real RealScalar;
54
+ typedef typename internal::conditional<
55
+ bool(internal::is_lvalue<Derived>::value),
56
+ Scalar *,
57
+ const Scalar *>::type
58
+ PointerType;
59
+
60
+ using Base::derived;
61
+ // using Base::RowsAtCompileTime;
62
+ // using Base::ColsAtCompileTime;
63
+ // using Base::SizeAtCompileTime;
64
+ using Base::MaxRowsAtCompileTime;
65
+ using Base::MaxColsAtCompileTime;
66
+ using Base::MaxSizeAtCompileTime;
67
+ using Base::IsVectorAtCompileTime;
68
+ using Base::Flags;
69
+ using Base::IsRowMajor;
70
+
71
+ using Base::rows;
72
+ using Base::cols;
73
+ using Base::size;
74
+ using Base::coeff;
75
+ using Base::coeffRef;
76
+ using Base::lazyAssign;
77
+ using Base::eval;
78
+
79
+ using Base::innerStride;
80
+ using Base::outerStride;
81
+ using Base::rowStride;
82
+ using Base::colStride;
83
+
84
+ // bug 217 - compile error on ICC 11.1
85
+ using Base::operator=;
86
+
87
+ typedef typename Base::CoeffReturnType CoeffReturnType;
88
+
89
+ /** \copydoc DenseBase::rows() */
90
+ EIGEN_DEVICE_FUNC inline Index rows() const { return m_rows.value(); }
91
+ /** \copydoc DenseBase::cols() */
92
+ EIGEN_DEVICE_FUNC inline Index cols() const { return m_cols.value(); }
93
+
94
+ /** Returns a pointer to the first coefficient of the matrix or vector.
95
+ *
96
+ * \note When addressing this data, make sure to honor the strides returned by innerStride() and outerStride().
97
+ *
98
+ * \sa innerStride(), outerStride()
99
+ */
100
+ EIGEN_DEVICE_FUNC inline const Scalar* data() const { return m_data; }
101
+
102
+ /** \copydoc PlainObjectBase::coeff(Index,Index) const */
103
+ EIGEN_DEVICE_FUNC
104
+ inline const Scalar& coeff(Index rowId, Index colId) const
105
+ {
106
+ return m_data[colId * colStride() + rowId * rowStride()];
107
+ }
108
+
109
+ /** \copydoc PlainObjectBase::coeff(Index) const */
110
+ EIGEN_DEVICE_FUNC
111
+ inline const Scalar& coeff(Index index) const
112
+ {
113
+ EIGEN_STATIC_ASSERT_INDEX_BASED_ACCESS(Derived)
114
+ return m_data[index * innerStride()];
115
+ }
116
+
117
+ /** \copydoc PlainObjectBase::coeffRef(Index,Index) const */
118
+ EIGEN_DEVICE_FUNC
119
+ inline const Scalar& coeffRef(Index rowId, Index colId) const
120
+ {
121
+ return this->m_data[colId * colStride() + rowId * rowStride()];
122
+ }
123
+
124
+ /** \copydoc PlainObjectBase::coeffRef(Index) const */
125
+ EIGEN_DEVICE_FUNC
126
+ inline const Scalar& coeffRef(Index index) const
127
+ {
128
+ EIGEN_STATIC_ASSERT_INDEX_BASED_ACCESS(Derived)
129
+ return this->m_data[index * innerStride()];
130
+ }
131
+
132
+ /** \internal */
133
+ template<int LoadMode>
134
+ inline PacketScalar packet(Index rowId, Index colId) const
135
+ {
136
+ return internal::ploadt<PacketScalar, LoadMode>
137
+ (m_data + (colId * colStride() + rowId * rowStride()));
138
+ }
139
+
140
+ /** \internal */
141
+ template<int LoadMode>
142
+ inline PacketScalar packet(Index index) const
143
+ {
144
+ EIGEN_STATIC_ASSERT_INDEX_BASED_ACCESS(Derived)
145
+ return internal::ploadt<PacketScalar, LoadMode>(m_data + index * innerStride());
146
+ }
147
+
148
+ /** \internal Constructor for fixed size matrices or vectors */
149
+ EIGEN_DEVICE_FUNC
150
+ explicit inline MapBase(PointerType dataPtr) : m_data(dataPtr), m_rows(RowsAtCompileTime), m_cols(ColsAtCompileTime)
151
+ {
152
+ EIGEN_STATIC_ASSERT_FIXED_SIZE(Derived)
153
+ checkSanity<Derived>();
154
+ }
155
+
156
+ /** \internal Constructor for dynamically sized vectors */
157
+ EIGEN_DEVICE_FUNC
158
+ inline MapBase(PointerType dataPtr, Index vecSize)
159
+ : m_data(dataPtr),
160
+ m_rows(RowsAtCompileTime == Dynamic ? vecSize : Index(RowsAtCompileTime)),
161
+ m_cols(ColsAtCompileTime == Dynamic ? vecSize : Index(ColsAtCompileTime))
162
+ {
163
+ EIGEN_STATIC_ASSERT_VECTOR_ONLY(Derived)
164
+ eigen_assert(vecSize >= 0);
165
+ eigen_assert(dataPtr == 0 || SizeAtCompileTime == Dynamic || SizeAtCompileTime == vecSize);
166
+ checkSanity<Derived>();
167
+ }
168
+
169
+ /** \internal Constructor for dynamically sized matrices */
170
+ EIGEN_DEVICE_FUNC
171
+ inline MapBase(PointerType dataPtr, Index rows, Index cols)
172
+ : m_data(dataPtr), m_rows(rows), m_cols(cols)
173
+ {
174
+ eigen_assert( (dataPtr == 0)
175
+ || ( rows >= 0 && (RowsAtCompileTime == Dynamic || RowsAtCompileTime == rows)
176
+ && cols >= 0 && (ColsAtCompileTime == Dynamic || ColsAtCompileTime == cols)));
177
+ checkSanity<Derived>();
178
+ }
179
+
180
+ #ifdef EIGEN_MAPBASE_PLUGIN
181
+ #include EIGEN_MAPBASE_PLUGIN
182
+ #endif
183
+
184
+ protected:
185
+
186
+ template<typename T>
187
+ EIGEN_DEVICE_FUNC
188
+ void checkSanity(typename internal::enable_if<(internal::traits<T>::Alignment>0),void*>::type = 0) const
189
+ {
190
+ #if EIGEN_MAX_ALIGN_BYTES>0
191
+ // innerStride() is not set yet when this function is called, so we optimistically assume the lowest plausible value:
192
+ const Index minInnerStride = InnerStrideAtCompileTime == Dynamic ? 1 : Index(InnerStrideAtCompileTime);
193
+ EIGEN_ONLY_USED_FOR_DEBUG(minInnerStride);
194
+ eigen_assert(( ((internal::UIntPtr(m_data) % internal::traits<Derived>::Alignment) == 0)
195
+ || (cols() * rows() * minInnerStride * sizeof(Scalar)) < internal::traits<Derived>::Alignment ) && "data is not aligned");
196
+ #endif
197
+ }
198
+
199
+ template<typename T>
200
+ EIGEN_DEVICE_FUNC
201
+ void checkSanity(typename internal::enable_if<internal::traits<T>::Alignment==0,void*>::type = 0) const
202
+ {}
203
+
204
+ PointerType m_data;
205
+ const internal::variable_if_dynamic<Index, RowsAtCompileTime> m_rows;
206
+ const internal::variable_if_dynamic<Index, ColsAtCompileTime> m_cols;
207
+ };
208
+
209
+ /** \ingroup Core_Module
210
+ *
211
+ * \brief Base class for non-const dense Map and Block expression with direct access
212
+ *
213
+ * This base class provides the non-const low-level accessors (e.g. coeff and coeffRef) of
214
+ * dense Map and Block objects with direct access.
215
+ * It inherits MapBase<Derived, ReadOnlyAccessors> which defines the const variant for reading specific entries.
216
+ *
217
+ * \sa class Map, class Block
218
+ */
219
+ template<typename Derived> class MapBase<Derived, WriteAccessors>
220
+ : public MapBase<Derived, ReadOnlyAccessors>
221
+ {
222
+ typedef MapBase<Derived, ReadOnlyAccessors> ReadOnlyMapBase;
223
+ public:
224
+
225
+ typedef MapBase<Derived, ReadOnlyAccessors> Base;
226
+
227
+ typedef typename Base::Scalar Scalar;
228
+ typedef typename Base::PacketScalar PacketScalar;
229
+ typedef typename Base::StorageIndex StorageIndex;
230
+ typedef typename Base::PointerType PointerType;
231
+
232
+ using Base::derived;
233
+ using Base::rows;
234
+ using Base::cols;
235
+ using Base::size;
236
+ using Base::coeff;
237
+ using Base::coeffRef;
238
+
239
+ using Base::innerStride;
240
+ using Base::outerStride;
241
+ using Base::rowStride;
242
+ using Base::colStride;
243
+
244
+ typedef typename internal::conditional<
245
+ internal::is_lvalue<Derived>::value,
246
+ Scalar,
247
+ const Scalar
248
+ >::type ScalarWithConstIfNotLvalue;
249
+
250
+ EIGEN_DEVICE_FUNC
251
+ inline const Scalar* data() const { return this->m_data; }
252
+ EIGEN_DEVICE_FUNC
253
+ inline ScalarWithConstIfNotLvalue* data() { return this->m_data; } // no const-cast here so non-const-correct code will give a compile error
254
+
255
+ EIGEN_DEVICE_FUNC
256
+ inline ScalarWithConstIfNotLvalue& coeffRef(Index row, Index col)
257
+ {
258
+ return this->m_data[col * colStride() + row * rowStride()];
259
+ }
260
+
261
+ EIGEN_DEVICE_FUNC
262
+ inline ScalarWithConstIfNotLvalue& coeffRef(Index index)
263
+ {
264
+ EIGEN_STATIC_ASSERT_INDEX_BASED_ACCESS(Derived)
265
+ return this->m_data[index * innerStride()];
266
+ }
267
+
268
+ template<int StoreMode>
269
+ inline void writePacket(Index row, Index col, const PacketScalar& val)
270
+ {
271
+ internal::pstoret<Scalar, PacketScalar, StoreMode>
272
+ (this->m_data + (col * colStride() + row * rowStride()), val);
273
+ }
274
+
275
+ template<int StoreMode>
276
+ inline void writePacket(Index index, const PacketScalar& val)
277
+ {
278
+ EIGEN_STATIC_ASSERT_INDEX_BASED_ACCESS(Derived)
279
+ internal::pstoret<Scalar, PacketScalar, StoreMode>
280
+ (this->m_data + index * innerStride(), val);
281
+ }
282
+
283
+ EIGEN_DEVICE_FUNC explicit inline MapBase(PointerType dataPtr) : Base(dataPtr) {}
284
+ EIGEN_DEVICE_FUNC inline MapBase(PointerType dataPtr, Index vecSize) : Base(dataPtr, vecSize) {}
285
+ EIGEN_DEVICE_FUNC inline MapBase(PointerType dataPtr, Index rows, Index cols) : Base(dataPtr, rows, cols) {}
286
+
287
+ EIGEN_DEVICE_FUNC
288
+ Derived& operator=(const MapBase& other)
289
+ {
290
+ ReadOnlyMapBase::Base::operator=(other);
291
+ return derived();
292
+ }
293
+
294
+ // In theory we could simply refer to Base:Base::operator=, but MSVC does not like Base::Base,
295
+ // see bugs 821 and 920.
296
+ using ReadOnlyMapBase::Base::operator=;
297
+ };
298
+
299
+ #undef EIGEN_STATIC_ASSERT_INDEX_BASED_ACCESS
300
+
301
+ } // end namespace Eigen
302
+
303
+ #endif // EIGEN_MAPBASE_H