tomoto 0.1.0

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Files changed (420) hide show
  1. checksums.yaml +7 -0
  2. data/CHANGELOG.md +3 -0
  3. data/LICENSE.txt +22 -0
  4. data/README.md +123 -0
  5. data/ext/tomoto/ext.cpp +245 -0
  6. data/ext/tomoto/extconf.rb +28 -0
  7. data/lib/tomoto.rb +12 -0
  8. data/lib/tomoto/ct.rb +11 -0
  9. data/lib/tomoto/hdp.rb +11 -0
  10. data/lib/tomoto/lda.rb +67 -0
  11. data/lib/tomoto/version.rb +3 -0
  12. data/vendor/EigenRand/EigenRand/Core.h +1139 -0
  13. data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
  14. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
  15. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
  16. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
  17. data/vendor/EigenRand/EigenRand/EigenRand +19 -0
  18. data/vendor/EigenRand/EigenRand/Macro.h +24 -0
  19. data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
  20. data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
  21. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
  22. data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
  23. data/vendor/EigenRand/EigenRand/doc.h +220 -0
  24. data/vendor/EigenRand/LICENSE +21 -0
  25. data/vendor/EigenRand/README.md +288 -0
  26. data/vendor/eigen/COPYING.BSD +26 -0
  27. data/vendor/eigen/COPYING.GPL +674 -0
  28. data/vendor/eigen/COPYING.LGPL +502 -0
  29. data/vendor/eigen/COPYING.MINPACK +52 -0
  30. data/vendor/eigen/COPYING.MPL2 +373 -0
  31. data/vendor/eigen/COPYING.README +18 -0
  32. data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
  33. data/vendor/eigen/Eigen/Cholesky +46 -0
  34. data/vendor/eigen/Eigen/CholmodSupport +48 -0
  35. data/vendor/eigen/Eigen/Core +537 -0
  36. data/vendor/eigen/Eigen/Dense +7 -0
  37. data/vendor/eigen/Eigen/Eigen +2 -0
  38. data/vendor/eigen/Eigen/Eigenvalues +61 -0
  39. data/vendor/eigen/Eigen/Geometry +62 -0
  40. data/vendor/eigen/Eigen/Householder +30 -0
  41. data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
  42. data/vendor/eigen/Eigen/Jacobi +33 -0
  43. data/vendor/eigen/Eigen/LU +50 -0
  44. data/vendor/eigen/Eigen/MetisSupport +35 -0
  45. data/vendor/eigen/Eigen/OrderingMethods +73 -0
  46. data/vendor/eigen/Eigen/PaStiXSupport +48 -0
  47. data/vendor/eigen/Eigen/PardisoSupport +35 -0
  48. data/vendor/eigen/Eigen/QR +51 -0
  49. data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
  50. data/vendor/eigen/Eigen/SPQRSupport +34 -0
  51. data/vendor/eigen/Eigen/SVD +51 -0
  52. data/vendor/eigen/Eigen/Sparse +36 -0
  53. data/vendor/eigen/Eigen/SparseCholesky +45 -0
  54. data/vendor/eigen/Eigen/SparseCore +69 -0
  55. data/vendor/eigen/Eigen/SparseLU +46 -0
  56. data/vendor/eigen/Eigen/SparseQR +37 -0
  57. data/vendor/eigen/Eigen/StdDeque +27 -0
  58. data/vendor/eigen/Eigen/StdList +26 -0
  59. data/vendor/eigen/Eigen/StdVector +27 -0
  60. data/vendor/eigen/Eigen/SuperLUSupport +64 -0
  61. data/vendor/eigen/Eigen/UmfPackSupport +40 -0
  62. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
  63. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
  64. data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  65. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
  66. data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
  67. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
  68. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
  69. data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
  70. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
  71. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
  72. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
  73. data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
  74. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
  75. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
  76. data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
  77. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
  78. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
  79. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
  80. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
  81. data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  82. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
  84. data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
  85. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
  86. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
  87. data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
  88. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
  89. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
  90. data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
  91. data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
  92. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  93. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
  94. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
  95. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
  96. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
  97. data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
  98. data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
  99. data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
  100. data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
  101. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
  102. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
  103. data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
  104. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
  105. data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
  106. data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
  107. data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
  108. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
  109. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
  110. data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
  111. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
  112. data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
  113. data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
  114. data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
  115. data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
  116. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
  117. data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
  118. data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
  119. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
  120. data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  121. data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
  122. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
  123. data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
  124. data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
  125. data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
  126. data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
  127. data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
  128. data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
  129. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
  130. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
  131. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
  132. data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
  133. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
  134. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
  135. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
  136. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
  137. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
  138. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
  139. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
  140. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
  141. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
  142. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
  143. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
  145. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
  146. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
  148. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
  149. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
  153. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
  154. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
  156. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
  160. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
  161. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
  162. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
  163. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
  164. data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  165. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
  166. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
  167. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
  168. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
  169. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  170. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
  171. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
  172. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  173. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
  174. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
  175. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
  176. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
  177. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  178. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  179. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  180. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
  181. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
  182. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  183. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  184. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
  185. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
  186. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
  187. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
  188. data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
  189. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
  190. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  191. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
  192. data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
  193. data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
  194. data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
  195. data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
  196. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
  197. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
  198. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
  199. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  200. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
  201. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  202. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  203. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  204. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  205. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  206. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  207. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
  208. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
  209. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  210. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
  211. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  212. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
  213. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
  214. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
  215. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
  216. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
  217. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
  218. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
  219. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  220. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
  221. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
  222. data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
  223. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
  224. data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
  225. data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
  226. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
  227. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
  228. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
  229. data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
  230. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
  231. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  232. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
  233. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
  234. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
  235. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
  236. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
  237. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
  238. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
  239. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
  240. data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
  241. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
  242. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
  243. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
  244. data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  245. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
  246. data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  247. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
  248. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
  249. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
  250. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  251. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
  252. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
  253. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  254. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
  255. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
  256. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
  257. data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  258. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
  259. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
  260. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
  261. data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  262. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
  263. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  264. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
  265. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  266. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
  267. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
  268. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  269. data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  270. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
  271. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
  272. data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  273. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
  274. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
  275. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
  276. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
  277. data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  278. data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
  279. data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  280. data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
  281. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
  282. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
  283. data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  284. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
  285. data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
  295. data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  296. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
  297. data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  298. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  299. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  300. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  307. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  308. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  309. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  310. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  311. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  312. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  313. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
  314. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +126 -0
  315. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
  316. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
  317. data/vendor/eigen/Eigen/src/StlSupport/details.h +84 -0
  318. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
  319. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
  320. data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
  321. data/vendor/eigen/Eigen/src/misc/Kernel.h +79 -0
  322. data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
  323. data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
  324. data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
  325. data/vendor/eigen/Eigen/src/misc/lapacke.h +16291 -0
  326. data/vendor/eigen/Eigen/src/misc/lapacke_mangling.h +17 -0
  327. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +332 -0
  328. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
  329. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
  330. data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  331. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +163 -0
  332. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  333. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
  334. data/vendor/eigen/README.md +3 -0
  335. data/vendor/eigen/bench/README.txt +55 -0
  336. data/vendor/eigen/bench/btl/COPYING +340 -0
  337. data/vendor/eigen/bench/btl/README +154 -0
  338. data/vendor/eigen/bench/tensors/README +21 -0
  339. data/vendor/eigen/blas/README.txt +6 -0
  340. data/vendor/eigen/demos/mandelbrot/README +10 -0
  341. data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
  342. data/vendor/eigen/demos/opengl/README +13 -0
  343. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
  344. data/vendor/eigen/unsupported/README.txt +50 -0
  345. data/vendor/tomotopy/LICENSE +21 -0
  346. data/vendor/tomotopy/README.kr.rst +375 -0
  347. data/vendor/tomotopy/README.rst +382 -0
  348. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
  349. data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
  350. data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
  351. data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
  352. data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
  353. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
  354. data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
  355. data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
  356. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
  357. data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
  358. data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
  359. data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
  360. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
  361. data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
  362. data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
  363. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
  364. data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
  365. data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
  366. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
  367. data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
  368. data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
  369. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
  370. data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
  371. data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
  372. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
  373. data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
  374. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
  375. data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
  376. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
  377. data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
  378. data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
  379. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
  380. data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
  381. data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
  382. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
  383. data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
  384. data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
  385. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
  386. data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
  387. data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
  388. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
  389. data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
  390. data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
  391. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
  392. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
  393. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +169 -0
  394. data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
  395. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
  396. data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
  397. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
  398. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
  399. data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
  400. data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
  401. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
  402. data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
  403. data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
  404. data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
  405. data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
  406. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
  407. data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
  408. data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
  409. data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
  410. data/vendor/tomotopy/src/Utils/exception.h +28 -0
  411. data/vendor/tomotopy/src/Utils/math.h +281 -0
  412. data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
  413. data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
  414. data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
  415. data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
  416. data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
  417. data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
  418. data/vendor/tomotopy/src/Utils/text.hpp +49 -0
  419. data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
  420. metadata +531 -0
@@ -0,0 +1,529 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2006-2009 Benoit Jacob <jacob.benoit.1@gmail.com>
5
+ // Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_MATRIXBASE_H
12
+ #define EIGEN_MATRIXBASE_H
13
+
14
+ namespace Eigen {
15
+
16
+ /** \class MatrixBase
17
+ * \ingroup Core_Module
18
+ *
19
+ * \brief Base class for all dense matrices, vectors, and expressions
20
+ *
21
+ * This class is the base that is inherited by all matrix, vector, and related expression
22
+ * types. Most of the Eigen API is contained in this class, and its base classes. Other important
23
+ * classes for the Eigen API are Matrix, and VectorwiseOp.
24
+ *
25
+ * Note that some methods are defined in other modules such as the \ref LU_Module LU module
26
+ * for all functions related to matrix inversions.
27
+ *
28
+ * \tparam Derived is the derived type, e.g. a matrix type, or an expression, etc.
29
+ *
30
+ * When writing a function taking Eigen objects as argument, if you want your function
31
+ * to take as argument any matrix, vector, or expression, just let it take a
32
+ * MatrixBase argument. As an example, here is a function printFirstRow which, given
33
+ * a matrix, vector, or expression \a x, prints the first row of \a x.
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+ *
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+ * \code
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+ template<typename Derived>
37
+ void printFirstRow(const Eigen::MatrixBase<Derived>& x)
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+ {
39
+ cout << x.row(0) << endl;
40
+ }
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+ * \endcode
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+ *
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+ * This class can be extended with the help of the plugin mechanism described on the page
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+ * \ref TopicCustomizing_Plugins by defining the preprocessor symbol \c EIGEN_MATRIXBASE_PLUGIN.
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+ *
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+ * \sa \blank \ref TopicClassHierarchy
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+ */
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+ template<typename Derived> class MatrixBase
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+ : public DenseBase<Derived>
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+ {
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+ public:
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+ #ifndef EIGEN_PARSED_BY_DOXYGEN
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+ typedef MatrixBase StorageBaseType;
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+ typedef typename internal::traits<Derived>::StorageKind StorageKind;
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+ typedef typename internal::traits<Derived>::StorageIndex StorageIndex;
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+ typedef typename internal::traits<Derived>::Scalar Scalar;
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+ typedef typename internal::packet_traits<Scalar>::type PacketScalar;
58
+ typedef typename NumTraits<Scalar>::Real RealScalar;
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+
60
+ typedef DenseBase<Derived> Base;
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+ using Base::RowsAtCompileTime;
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+ using Base::ColsAtCompileTime;
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+ using Base::SizeAtCompileTime;
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+ using Base::MaxRowsAtCompileTime;
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+ using Base::MaxColsAtCompileTime;
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+ using Base::MaxSizeAtCompileTime;
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+ using Base::IsVectorAtCompileTime;
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+ using Base::Flags;
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+
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+ using Base::derived;
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+ using Base::const_cast_derived;
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+ using Base::rows;
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+ using Base::cols;
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+ using Base::size;
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+ using Base::coeff;
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+ using Base::coeffRef;
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+ using Base::lazyAssign;
78
+ using Base::eval;
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+ using Base::operator+=;
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+ using Base::operator-=;
81
+ using Base::operator*=;
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+ using Base::operator/=;
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+
84
+ typedef typename Base::CoeffReturnType CoeffReturnType;
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+ typedef typename Base::ConstTransposeReturnType ConstTransposeReturnType;
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+ typedef typename Base::RowXpr RowXpr;
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+ typedef typename Base::ColXpr ColXpr;
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+ #endif // not EIGEN_PARSED_BY_DOXYGEN
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+
90
+
91
+
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+ #ifndef EIGEN_PARSED_BY_DOXYGEN
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+ /** type of the equivalent square matrix */
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+ typedef Matrix<Scalar,EIGEN_SIZE_MAX(RowsAtCompileTime,ColsAtCompileTime),
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+ EIGEN_SIZE_MAX(RowsAtCompileTime,ColsAtCompileTime)> SquareMatrixType;
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+ #endif // not EIGEN_PARSED_BY_DOXYGEN
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+
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+ /** \returns the size of the main diagonal, which is min(rows(),cols()).
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+ * \sa rows(), cols(), SizeAtCompileTime. */
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+ EIGEN_DEVICE_FUNC
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+ inline Index diagonalSize() const { return (numext::mini)(rows(),cols()); }
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+
103
+ typedef typename Base::PlainObject PlainObject;
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+
105
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
106
+ /** \internal Represents a matrix with all coefficients equal to one another*/
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+ typedef CwiseNullaryOp<internal::scalar_constant_op<Scalar>,PlainObject> ConstantReturnType;
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+ /** \internal the return type of MatrixBase::adjoint() */
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+ typedef typename internal::conditional<NumTraits<Scalar>::IsComplex,
110
+ CwiseUnaryOp<internal::scalar_conjugate_op<Scalar>, ConstTransposeReturnType>,
111
+ ConstTransposeReturnType
112
+ >::type AdjointReturnType;
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+ /** \internal Return type of eigenvalues() */
114
+ typedef Matrix<std::complex<RealScalar>, internal::traits<Derived>::ColsAtCompileTime, 1, ColMajor> EigenvaluesReturnType;
115
+ /** \internal the return type of identity */
116
+ typedef CwiseNullaryOp<internal::scalar_identity_op<Scalar>,PlainObject> IdentityReturnType;
117
+ /** \internal the return type of unit vectors */
118
+ typedef Block<const CwiseNullaryOp<internal::scalar_identity_op<Scalar>, SquareMatrixType>,
119
+ internal::traits<Derived>::RowsAtCompileTime,
120
+ internal::traits<Derived>::ColsAtCompileTime> BasisReturnType;
121
+ #endif // not EIGEN_PARSED_BY_DOXYGEN
122
+
123
+ #define EIGEN_CURRENT_STORAGE_BASE_CLASS Eigen::MatrixBase
124
+ #define EIGEN_DOC_UNARY_ADDONS(X,Y)
125
+ # include "../plugins/CommonCwiseUnaryOps.h"
126
+ # include "../plugins/CommonCwiseBinaryOps.h"
127
+ # include "../plugins/MatrixCwiseUnaryOps.h"
128
+ # include "../plugins/MatrixCwiseBinaryOps.h"
129
+ # ifdef EIGEN_MATRIXBASE_PLUGIN
130
+ # include EIGEN_MATRIXBASE_PLUGIN
131
+ # endif
132
+ #undef EIGEN_CURRENT_STORAGE_BASE_CLASS
133
+ #undef EIGEN_DOC_UNARY_ADDONS
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+
135
+ /** Special case of the template operator=, in order to prevent the compiler
136
+ * from generating a default operator= (issue hit with g++ 4.1)
137
+ */
138
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
139
+ Derived& operator=(const MatrixBase& other);
140
+
141
+ // We cannot inherit here via Base::operator= since it is causing
142
+ // trouble with MSVC.
143
+
144
+ template <typename OtherDerived>
145
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
146
+ Derived& operator=(const DenseBase<OtherDerived>& other);
147
+
148
+ template <typename OtherDerived>
149
+ EIGEN_DEVICE_FUNC
150
+ Derived& operator=(const EigenBase<OtherDerived>& other);
151
+
152
+ template<typename OtherDerived>
153
+ EIGEN_DEVICE_FUNC
154
+ Derived& operator=(const ReturnByValue<OtherDerived>& other);
155
+
156
+ template<typename OtherDerived>
157
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
158
+ Derived& operator+=(const MatrixBase<OtherDerived>& other);
159
+ template<typename OtherDerived>
160
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
161
+ Derived& operator-=(const MatrixBase<OtherDerived>& other);
162
+
163
+ template<typename OtherDerived>
164
+ EIGEN_DEVICE_FUNC
165
+ const Product<Derived,OtherDerived>
166
+ operator*(const MatrixBase<OtherDerived> &other) const;
167
+
168
+ template<typename OtherDerived>
169
+ EIGEN_DEVICE_FUNC
170
+ const Product<Derived,OtherDerived,LazyProduct>
171
+ lazyProduct(const MatrixBase<OtherDerived> &other) const;
172
+
173
+ template<typename OtherDerived>
174
+ Derived& operator*=(const EigenBase<OtherDerived>& other);
175
+
176
+ template<typename OtherDerived>
177
+ void applyOnTheLeft(const EigenBase<OtherDerived>& other);
178
+
179
+ template<typename OtherDerived>
180
+ void applyOnTheRight(const EigenBase<OtherDerived>& other);
181
+
182
+ template<typename DiagonalDerived>
183
+ EIGEN_DEVICE_FUNC
184
+ const Product<Derived, DiagonalDerived, LazyProduct>
185
+ operator*(const DiagonalBase<DiagonalDerived> &diagonal) const;
186
+
187
+ template<typename OtherDerived>
188
+ EIGEN_DEVICE_FUNC
189
+ typename ScalarBinaryOpTraits<typename internal::traits<Derived>::Scalar,typename internal::traits<OtherDerived>::Scalar>::ReturnType
190
+ dot(const MatrixBase<OtherDerived>& other) const;
191
+
192
+ EIGEN_DEVICE_FUNC RealScalar squaredNorm() const;
193
+ EIGEN_DEVICE_FUNC RealScalar norm() const;
194
+ RealScalar stableNorm() const;
195
+ RealScalar blueNorm() const;
196
+ RealScalar hypotNorm() const;
197
+ EIGEN_DEVICE_FUNC const PlainObject normalized() const;
198
+ EIGEN_DEVICE_FUNC const PlainObject stableNormalized() const;
199
+ EIGEN_DEVICE_FUNC void normalize();
200
+ EIGEN_DEVICE_FUNC void stableNormalize();
201
+
202
+ EIGEN_DEVICE_FUNC const AdjointReturnType adjoint() const;
203
+ EIGEN_DEVICE_FUNC void adjointInPlace();
204
+
205
+ typedef Diagonal<Derived> DiagonalReturnType;
206
+ EIGEN_DEVICE_FUNC
207
+ DiagonalReturnType diagonal();
208
+
209
+ typedef typename internal::add_const<Diagonal<const Derived> >::type ConstDiagonalReturnType;
210
+ EIGEN_DEVICE_FUNC
211
+ ConstDiagonalReturnType diagonal() const;
212
+
213
+ template<int Index> struct DiagonalIndexReturnType { typedef Diagonal<Derived,Index> Type; };
214
+ template<int Index> struct ConstDiagonalIndexReturnType { typedef const Diagonal<const Derived,Index> Type; };
215
+
216
+ template<int Index>
217
+ EIGEN_DEVICE_FUNC
218
+ typename DiagonalIndexReturnType<Index>::Type diagonal();
219
+
220
+ template<int Index>
221
+ EIGEN_DEVICE_FUNC
222
+ typename ConstDiagonalIndexReturnType<Index>::Type diagonal() const;
223
+
224
+ typedef Diagonal<Derived,DynamicIndex> DiagonalDynamicIndexReturnType;
225
+ typedef typename internal::add_const<Diagonal<const Derived,DynamicIndex> >::type ConstDiagonalDynamicIndexReturnType;
226
+
227
+ EIGEN_DEVICE_FUNC
228
+ DiagonalDynamicIndexReturnType diagonal(Index index);
229
+ EIGEN_DEVICE_FUNC
230
+ ConstDiagonalDynamicIndexReturnType diagonal(Index index) const;
231
+
232
+ template<unsigned int Mode> struct TriangularViewReturnType { typedef TriangularView<Derived, Mode> Type; };
233
+ template<unsigned int Mode> struct ConstTriangularViewReturnType { typedef const TriangularView<const Derived, Mode> Type; };
234
+
235
+ template<unsigned int Mode>
236
+ EIGEN_DEVICE_FUNC
237
+ typename TriangularViewReturnType<Mode>::Type triangularView();
238
+ template<unsigned int Mode>
239
+ EIGEN_DEVICE_FUNC
240
+ typename ConstTriangularViewReturnType<Mode>::Type triangularView() const;
241
+
242
+ template<unsigned int UpLo> struct SelfAdjointViewReturnType { typedef SelfAdjointView<Derived, UpLo> Type; };
243
+ template<unsigned int UpLo> struct ConstSelfAdjointViewReturnType { typedef const SelfAdjointView<const Derived, UpLo> Type; };
244
+
245
+ template<unsigned int UpLo>
246
+ EIGEN_DEVICE_FUNC
247
+ typename SelfAdjointViewReturnType<UpLo>::Type selfadjointView();
248
+ template<unsigned int UpLo>
249
+ EIGEN_DEVICE_FUNC
250
+ typename ConstSelfAdjointViewReturnType<UpLo>::Type selfadjointView() const;
251
+
252
+ const SparseView<Derived> sparseView(const Scalar& m_reference = Scalar(0),
253
+ const typename NumTraits<Scalar>::Real& m_epsilon = NumTraits<Scalar>::dummy_precision()) const;
254
+ EIGEN_DEVICE_FUNC static const IdentityReturnType Identity();
255
+ EIGEN_DEVICE_FUNC static const IdentityReturnType Identity(Index rows, Index cols);
256
+ EIGEN_DEVICE_FUNC static const BasisReturnType Unit(Index size, Index i);
257
+ EIGEN_DEVICE_FUNC static const BasisReturnType Unit(Index i);
258
+ EIGEN_DEVICE_FUNC static const BasisReturnType UnitX();
259
+ EIGEN_DEVICE_FUNC static const BasisReturnType UnitY();
260
+ EIGEN_DEVICE_FUNC static const BasisReturnType UnitZ();
261
+ EIGEN_DEVICE_FUNC static const BasisReturnType UnitW();
262
+
263
+ EIGEN_DEVICE_FUNC
264
+ const DiagonalWrapper<const Derived> asDiagonal() const;
265
+ const PermutationWrapper<const Derived> asPermutation() const;
266
+
267
+ EIGEN_DEVICE_FUNC
268
+ Derived& setIdentity();
269
+ EIGEN_DEVICE_FUNC
270
+ Derived& setIdentity(Index rows, Index cols);
271
+
272
+ bool isIdentity(const RealScalar& prec = NumTraits<Scalar>::dummy_precision()) const;
273
+ bool isDiagonal(const RealScalar& prec = NumTraits<Scalar>::dummy_precision()) const;
274
+
275
+ bool isUpperTriangular(const RealScalar& prec = NumTraits<Scalar>::dummy_precision()) const;
276
+ bool isLowerTriangular(const RealScalar& prec = NumTraits<Scalar>::dummy_precision()) const;
277
+
278
+ template<typename OtherDerived>
279
+ bool isOrthogonal(const MatrixBase<OtherDerived>& other,
280
+ const RealScalar& prec = NumTraits<Scalar>::dummy_precision()) const;
281
+ bool isUnitary(const RealScalar& prec = NumTraits<Scalar>::dummy_precision()) const;
282
+
283
+ /** \returns true if each coefficients of \c *this and \a other are all exactly equal.
284
+ * \warning When using floating point scalar values you probably should rather use a
285
+ * fuzzy comparison such as isApprox()
286
+ * \sa isApprox(), operator!= */
287
+ template<typename OtherDerived>
288
+ EIGEN_DEVICE_FUNC inline bool operator==(const MatrixBase<OtherDerived>& other) const
289
+ { return cwiseEqual(other).all(); }
290
+
291
+ /** \returns true if at least one pair of coefficients of \c *this and \a other are not exactly equal to each other.
292
+ * \warning When using floating point scalar values you probably should rather use a
293
+ * fuzzy comparison such as isApprox()
294
+ * \sa isApprox(), operator== */
295
+ template<typename OtherDerived>
296
+ EIGEN_DEVICE_FUNC inline bool operator!=(const MatrixBase<OtherDerived>& other) const
297
+ { return cwiseNotEqual(other).any(); }
298
+
299
+ NoAlias<Derived,Eigen::MatrixBase > noalias();
300
+
301
+ // TODO forceAlignedAccess is temporarily disabled
302
+ // Need to find a nicer workaround.
303
+ inline const Derived& forceAlignedAccess() const { return derived(); }
304
+ inline Derived& forceAlignedAccess() { return derived(); }
305
+ template<bool Enable> inline const Derived& forceAlignedAccessIf() const { return derived(); }
306
+ template<bool Enable> inline Derived& forceAlignedAccessIf() { return derived(); }
307
+
308
+ EIGEN_DEVICE_FUNC Scalar trace() const;
309
+
310
+ template<int p> EIGEN_DEVICE_FUNC RealScalar lpNorm() const;
311
+
312
+ EIGEN_DEVICE_FUNC MatrixBase<Derived>& matrix() { return *this; }
313
+ EIGEN_DEVICE_FUNC const MatrixBase<Derived>& matrix() const { return *this; }
314
+
315
+ /** \returns an \link Eigen::ArrayBase Array \endlink expression of this matrix
316
+ * \sa ArrayBase::matrix() */
317
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE ArrayWrapper<Derived> array() { return ArrayWrapper<Derived>(derived()); }
318
+ /** \returns a const \link Eigen::ArrayBase Array \endlink expression of this matrix
319
+ * \sa ArrayBase::matrix() */
320
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const ArrayWrapper<const Derived> array() const { return ArrayWrapper<const Derived>(derived()); }
321
+
322
+ /////////// LU module ///////////
323
+
324
+ inline const FullPivLU<PlainObject> fullPivLu() const;
325
+ inline const PartialPivLU<PlainObject> partialPivLu() const;
326
+
327
+ inline const PartialPivLU<PlainObject> lu() const;
328
+
329
+ inline const Inverse<Derived> inverse() const;
330
+
331
+ template<typename ResultType>
332
+ inline void computeInverseAndDetWithCheck(
333
+ ResultType& inverse,
334
+ typename ResultType::Scalar& determinant,
335
+ bool& invertible,
336
+ const RealScalar& absDeterminantThreshold = NumTraits<Scalar>::dummy_precision()
337
+ ) const;
338
+ template<typename ResultType>
339
+ inline void computeInverseWithCheck(
340
+ ResultType& inverse,
341
+ bool& invertible,
342
+ const RealScalar& absDeterminantThreshold = NumTraits<Scalar>::dummy_precision()
343
+ ) const;
344
+ Scalar determinant() const;
345
+
346
+ /////////// Cholesky module ///////////
347
+
348
+ inline const LLT<PlainObject> llt() const;
349
+ inline const LDLT<PlainObject> ldlt() const;
350
+
351
+ /////////// QR module ///////////
352
+
353
+ inline const HouseholderQR<PlainObject> householderQr() const;
354
+ inline const ColPivHouseholderQR<PlainObject> colPivHouseholderQr() const;
355
+ inline const FullPivHouseholderQR<PlainObject> fullPivHouseholderQr() const;
356
+ inline const CompleteOrthogonalDecomposition<PlainObject> completeOrthogonalDecomposition() const;
357
+
358
+ /////////// Eigenvalues module ///////////
359
+
360
+ inline EigenvaluesReturnType eigenvalues() const;
361
+ inline RealScalar operatorNorm() const;
362
+
363
+ /////////// SVD module ///////////
364
+
365
+ inline JacobiSVD<PlainObject> jacobiSvd(unsigned int computationOptions = 0) const;
366
+ inline BDCSVD<PlainObject> bdcSvd(unsigned int computationOptions = 0) const;
367
+
368
+ /////////// Geometry module ///////////
369
+
370
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
371
+ /// \internal helper struct to form the return type of the cross product
372
+ template<typename OtherDerived> struct cross_product_return_type {
373
+ typedef typename ScalarBinaryOpTraits<typename internal::traits<Derived>::Scalar,typename internal::traits<OtherDerived>::Scalar>::ReturnType Scalar;
374
+ typedef Matrix<Scalar,MatrixBase::RowsAtCompileTime,MatrixBase::ColsAtCompileTime> type;
375
+ };
376
+ #endif // EIGEN_PARSED_BY_DOXYGEN
377
+ template<typename OtherDerived>
378
+ EIGEN_DEVICE_FUNC
379
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
380
+ inline typename cross_product_return_type<OtherDerived>::type
381
+ #else
382
+ inline PlainObject
383
+ #endif
384
+ cross(const MatrixBase<OtherDerived>& other) const;
385
+
386
+ template<typename OtherDerived>
387
+ EIGEN_DEVICE_FUNC
388
+ inline PlainObject cross3(const MatrixBase<OtherDerived>& other) const;
389
+
390
+ EIGEN_DEVICE_FUNC
391
+ inline PlainObject unitOrthogonal(void) const;
392
+
393
+ EIGEN_DEVICE_FUNC
394
+ inline Matrix<Scalar,3,1> eulerAngles(Index a0, Index a1, Index a2) const;
395
+
396
+ // put this as separate enum value to work around possible GCC 4.3 bug (?)
397
+ enum { HomogeneousReturnTypeDirection = ColsAtCompileTime==1&&RowsAtCompileTime==1 ? ((internal::traits<Derived>::Flags&RowMajorBit)==RowMajorBit ? Horizontal : Vertical)
398
+ : ColsAtCompileTime==1 ? Vertical : Horizontal };
399
+ typedef Homogeneous<Derived, HomogeneousReturnTypeDirection> HomogeneousReturnType;
400
+ EIGEN_DEVICE_FUNC
401
+ inline HomogeneousReturnType homogeneous() const;
402
+
403
+ enum {
404
+ SizeMinusOne = SizeAtCompileTime==Dynamic ? Dynamic : SizeAtCompileTime-1
405
+ };
406
+ typedef Block<const Derived,
407
+ internal::traits<Derived>::ColsAtCompileTime==1 ? SizeMinusOne : 1,
408
+ internal::traits<Derived>::ColsAtCompileTime==1 ? 1 : SizeMinusOne> ConstStartMinusOne;
409
+ typedef EIGEN_EXPR_BINARYOP_SCALAR_RETURN_TYPE(ConstStartMinusOne,Scalar,quotient) HNormalizedReturnType;
410
+ EIGEN_DEVICE_FUNC
411
+ inline const HNormalizedReturnType hnormalized() const;
412
+
413
+ ////////// Householder module ///////////
414
+
415
+ void makeHouseholderInPlace(Scalar& tau, RealScalar& beta);
416
+ template<typename EssentialPart>
417
+ void makeHouseholder(EssentialPart& essential,
418
+ Scalar& tau, RealScalar& beta) const;
419
+ template<typename EssentialPart>
420
+ void applyHouseholderOnTheLeft(const EssentialPart& essential,
421
+ const Scalar& tau,
422
+ Scalar* workspace);
423
+ template<typename EssentialPart>
424
+ void applyHouseholderOnTheRight(const EssentialPart& essential,
425
+ const Scalar& tau,
426
+ Scalar* workspace);
427
+
428
+ ///////// Jacobi module /////////
429
+
430
+ template<typename OtherScalar>
431
+ void applyOnTheLeft(Index p, Index q, const JacobiRotation<OtherScalar>& j);
432
+ template<typename OtherScalar>
433
+ void applyOnTheRight(Index p, Index q, const JacobiRotation<OtherScalar>& j);
434
+
435
+ ///////// SparseCore module /////////
436
+
437
+ template<typename OtherDerived>
438
+ EIGEN_STRONG_INLINE const typename SparseMatrixBase<OtherDerived>::template CwiseProductDenseReturnType<Derived>::Type
439
+ cwiseProduct(const SparseMatrixBase<OtherDerived> &other) const
440
+ {
441
+ return other.cwiseProduct(derived());
442
+ }
443
+
444
+ ///////// MatrixFunctions module /////////
445
+
446
+ typedef typename internal::stem_function<Scalar>::type StemFunction;
447
+ #define EIGEN_MATRIX_FUNCTION(ReturnType, Name, Description) \
448
+ /** \returns an expression of the matrix Description of \c *this. \brief This function requires the <a href="unsupported/group__MatrixFunctions__Module.html"> unsupported MatrixFunctions module</a>. To compute the coefficient-wise Description use ArrayBase::##Name . */ \
449
+ const ReturnType<Derived> Name() const;
450
+ #define EIGEN_MATRIX_FUNCTION_1(ReturnType, Name, Description, Argument) \
451
+ /** \returns an expression of the matrix Description of \c *this. \brief This function requires the <a href="unsupported/group__MatrixFunctions__Module.html"> unsupported MatrixFunctions module</a>. To compute the coefficient-wise Description use ArrayBase::##Name . */ \
452
+ const ReturnType<Derived> Name(Argument) const;
453
+
454
+ EIGEN_MATRIX_FUNCTION(MatrixExponentialReturnValue, exp, exponential)
455
+ /** \brief Helper function for the <a href="unsupported/group__MatrixFunctions__Module.html"> unsupported MatrixFunctions module</a>.*/
456
+ const MatrixFunctionReturnValue<Derived> matrixFunction(StemFunction f) const;
457
+ EIGEN_MATRIX_FUNCTION(MatrixFunctionReturnValue, cosh, hyperbolic cosine)
458
+ EIGEN_MATRIX_FUNCTION(MatrixFunctionReturnValue, sinh, hyperbolic sine)
459
+ EIGEN_MATRIX_FUNCTION(MatrixFunctionReturnValue, cos, cosine)
460
+ EIGEN_MATRIX_FUNCTION(MatrixFunctionReturnValue, sin, sine)
461
+ EIGEN_MATRIX_FUNCTION(MatrixSquareRootReturnValue, sqrt, square root)
462
+ EIGEN_MATRIX_FUNCTION(MatrixLogarithmReturnValue, log, logarithm)
463
+ EIGEN_MATRIX_FUNCTION_1(MatrixPowerReturnValue, pow, power to \c p, const RealScalar& p)
464
+ EIGEN_MATRIX_FUNCTION_1(MatrixComplexPowerReturnValue, pow, power to \c p, const std::complex<RealScalar>& p)
465
+
466
+ protected:
467
+ EIGEN_DEVICE_FUNC MatrixBase() : Base() {}
468
+
469
+ private:
470
+ EIGEN_DEVICE_FUNC explicit MatrixBase(int);
471
+ EIGEN_DEVICE_FUNC MatrixBase(int,int);
472
+ template<typename OtherDerived> EIGEN_DEVICE_FUNC explicit MatrixBase(const MatrixBase<OtherDerived>&);
473
+ protected:
474
+ // mixing arrays and matrices is not legal
475
+ template<typename OtherDerived> Derived& operator+=(const ArrayBase<OtherDerived>& )
476
+ {EIGEN_STATIC_ASSERT(std::ptrdiff_t(sizeof(typename OtherDerived::Scalar))==-1,YOU_CANNOT_MIX_ARRAYS_AND_MATRICES); return *this;}
477
+ // mixing arrays and matrices is not legal
478
+ template<typename OtherDerived> Derived& operator-=(const ArrayBase<OtherDerived>& )
479
+ {EIGEN_STATIC_ASSERT(std::ptrdiff_t(sizeof(typename OtherDerived::Scalar))==-1,YOU_CANNOT_MIX_ARRAYS_AND_MATRICES); return *this;}
480
+ };
481
+
482
+
483
+ /***************************************************************************
484
+ * Implementation of matrix base methods
485
+ ***************************************************************************/
486
+
487
+ /** replaces \c *this by \c *this * \a other.
488
+ *
489
+ * \returns a reference to \c *this
490
+ *
491
+ * Example: \include MatrixBase_applyOnTheRight.cpp
492
+ * Output: \verbinclude MatrixBase_applyOnTheRight.out
493
+ */
494
+ template<typename Derived>
495
+ template<typename OtherDerived>
496
+ inline Derived&
497
+ MatrixBase<Derived>::operator*=(const EigenBase<OtherDerived> &other)
498
+ {
499
+ other.derived().applyThisOnTheRight(derived());
500
+ return derived();
501
+ }
502
+
503
+ /** replaces \c *this by \c *this * \a other. It is equivalent to MatrixBase::operator*=().
504
+ *
505
+ * Example: \include MatrixBase_applyOnTheRight.cpp
506
+ * Output: \verbinclude MatrixBase_applyOnTheRight.out
507
+ */
508
+ template<typename Derived>
509
+ template<typename OtherDerived>
510
+ inline void MatrixBase<Derived>::applyOnTheRight(const EigenBase<OtherDerived> &other)
511
+ {
512
+ other.derived().applyThisOnTheRight(derived());
513
+ }
514
+
515
+ /** replaces \c *this by \a other * \c *this.
516
+ *
517
+ * Example: \include MatrixBase_applyOnTheLeft.cpp
518
+ * Output: \verbinclude MatrixBase_applyOnTheLeft.out
519
+ */
520
+ template<typename Derived>
521
+ template<typename OtherDerived>
522
+ inline void MatrixBase<Derived>::applyOnTheLeft(const EigenBase<OtherDerived> &other)
523
+ {
524
+ other.derived().applyThisOnTheLeft(derived());
525
+ }
526
+
527
+ } // end namespace Eigen
528
+
529
+ #endif // EIGEN_MATRIXBASE_H