tomoto 0.1.0

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Files changed (420) hide show
  1. checksums.yaml +7 -0
  2. data/CHANGELOG.md +3 -0
  3. data/LICENSE.txt +22 -0
  4. data/README.md +123 -0
  5. data/ext/tomoto/ext.cpp +245 -0
  6. data/ext/tomoto/extconf.rb +28 -0
  7. data/lib/tomoto.rb +12 -0
  8. data/lib/tomoto/ct.rb +11 -0
  9. data/lib/tomoto/hdp.rb +11 -0
  10. data/lib/tomoto/lda.rb +67 -0
  11. data/lib/tomoto/version.rb +3 -0
  12. data/vendor/EigenRand/EigenRand/Core.h +1139 -0
  13. data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
  14. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
  15. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
  16. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
  17. data/vendor/EigenRand/EigenRand/EigenRand +19 -0
  18. data/vendor/EigenRand/EigenRand/Macro.h +24 -0
  19. data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
  20. data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
  21. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
  22. data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
  23. data/vendor/EigenRand/EigenRand/doc.h +220 -0
  24. data/vendor/EigenRand/LICENSE +21 -0
  25. data/vendor/EigenRand/README.md +288 -0
  26. data/vendor/eigen/COPYING.BSD +26 -0
  27. data/vendor/eigen/COPYING.GPL +674 -0
  28. data/vendor/eigen/COPYING.LGPL +502 -0
  29. data/vendor/eigen/COPYING.MINPACK +52 -0
  30. data/vendor/eigen/COPYING.MPL2 +373 -0
  31. data/vendor/eigen/COPYING.README +18 -0
  32. data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
  33. data/vendor/eigen/Eigen/Cholesky +46 -0
  34. data/vendor/eigen/Eigen/CholmodSupport +48 -0
  35. data/vendor/eigen/Eigen/Core +537 -0
  36. data/vendor/eigen/Eigen/Dense +7 -0
  37. data/vendor/eigen/Eigen/Eigen +2 -0
  38. data/vendor/eigen/Eigen/Eigenvalues +61 -0
  39. data/vendor/eigen/Eigen/Geometry +62 -0
  40. data/vendor/eigen/Eigen/Householder +30 -0
  41. data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
  42. data/vendor/eigen/Eigen/Jacobi +33 -0
  43. data/vendor/eigen/Eigen/LU +50 -0
  44. data/vendor/eigen/Eigen/MetisSupport +35 -0
  45. data/vendor/eigen/Eigen/OrderingMethods +73 -0
  46. data/vendor/eigen/Eigen/PaStiXSupport +48 -0
  47. data/vendor/eigen/Eigen/PardisoSupport +35 -0
  48. data/vendor/eigen/Eigen/QR +51 -0
  49. data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
  50. data/vendor/eigen/Eigen/SPQRSupport +34 -0
  51. data/vendor/eigen/Eigen/SVD +51 -0
  52. data/vendor/eigen/Eigen/Sparse +36 -0
  53. data/vendor/eigen/Eigen/SparseCholesky +45 -0
  54. data/vendor/eigen/Eigen/SparseCore +69 -0
  55. data/vendor/eigen/Eigen/SparseLU +46 -0
  56. data/vendor/eigen/Eigen/SparseQR +37 -0
  57. data/vendor/eigen/Eigen/StdDeque +27 -0
  58. data/vendor/eigen/Eigen/StdList +26 -0
  59. data/vendor/eigen/Eigen/StdVector +27 -0
  60. data/vendor/eigen/Eigen/SuperLUSupport +64 -0
  61. data/vendor/eigen/Eigen/UmfPackSupport +40 -0
  62. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
  63. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
  64. data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  65. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
  66. data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
  67. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
  68. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
  69. data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
  70. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
  71. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
  72. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
  73. data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
  74. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
  75. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
  76. data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
  77. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
  78. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
  79. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
  80. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
  81. data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  82. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
  84. data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
  85. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
  86. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
  87. data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
  88. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
  89. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
  90. data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
  91. data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
  92. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  93. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
  94. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
  95. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
  96. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
  97. data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
  98. data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
  99. data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
  100. data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
  101. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
  102. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
  103. data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
  104. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
  105. data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
  106. data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
  107. data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
  108. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
  109. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
  110. data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
  111. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
  112. data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
  113. data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
  114. data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
  115. data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
  116. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
  117. data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
  118. data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
  119. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
  120. data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  121. data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
  122. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
  123. data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
  124. data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
  125. data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
  126. data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
  127. data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
  128. data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
  129. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
  130. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
  131. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
  132. data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
  133. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
  134. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
  135. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
  136. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
  137. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
  138. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
  139. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
  140. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
  141. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
  142. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
  143. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
  145. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
  146. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
  148. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
  149. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
  153. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
  154. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
  156. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
  160. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
  161. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
  162. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
  163. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
  164. data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  165. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
  166. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
  167. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
  168. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
  169. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  170. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
  171. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
  172. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  173. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
  174. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
  175. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
  176. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
  177. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  178. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  179. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  180. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
  181. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
  182. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  183. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  184. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
  185. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
  186. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
  187. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
  188. data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
  189. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
  190. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  191. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
  192. data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
  193. data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
  194. data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
  195. data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
  196. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
  197. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
  198. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
  199. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  200. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
  201. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  202. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  203. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  204. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  205. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  206. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  207. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
  208. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
  209. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  210. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
  211. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  212. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
  213. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
  214. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
  215. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
  216. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
  217. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
  218. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
  219. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  220. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
  221. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
  222. data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
  223. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
  224. data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
  225. data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
  226. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
  227. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
  228. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
  229. data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
  230. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
  231. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  232. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
  233. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
  234. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
  235. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
  236. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
  237. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
  238. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
  239. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
  240. data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
  241. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
  242. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
  243. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
  244. data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  245. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
  246. data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  247. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
  248. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
  249. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
  250. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  251. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
  252. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
  253. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  254. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
  255. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
  256. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
  257. data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  258. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
  259. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
  260. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
  261. data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  262. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
  263. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  264. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
  265. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  266. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
  267. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
  268. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  269. data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  270. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
  271. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
  272. data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  273. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
  274. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
  275. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
  276. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
  277. data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  278. data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
  279. data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  280. data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
  281. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
  282. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
  283. data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  284. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
  285. data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
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  295. data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
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  299. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  300. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
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  350. data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
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  383. data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
  384. data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
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  398. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
  399. data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
  400. data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
  401. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
  402. data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
  403. data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
  404. data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
  405. data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
  406. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
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  408. data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
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  414. data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
  415. data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
  416. data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
  417. data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
  418. data/vendor/tomotopy/src/Utils/text.hpp +49 -0
  419. data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
  420. metadata +531 -0
@@ -0,0 +1,676 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008-2009 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ // Copyright (C) 2009 Benoit Jacob <jacob.benoit.1@gmail.com>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_FULLPIVOTINGHOUSEHOLDERQR_H
12
+ #define EIGEN_FULLPIVOTINGHOUSEHOLDERQR_H
13
+
14
+ namespace Eigen {
15
+
16
+ namespace internal {
17
+
18
+ template<typename _MatrixType> struct traits<FullPivHouseholderQR<_MatrixType> >
19
+ : traits<_MatrixType>
20
+ {
21
+ enum { Flags = 0 };
22
+ };
23
+
24
+ template<typename MatrixType> struct FullPivHouseholderQRMatrixQReturnType;
25
+
26
+ template<typename MatrixType>
27
+ struct traits<FullPivHouseholderQRMatrixQReturnType<MatrixType> >
28
+ {
29
+ typedef typename MatrixType::PlainObject ReturnType;
30
+ };
31
+
32
+ } // end namespace internal
33
+
34
+ /** \ingroup QR_Module
35
+ *
36
+ * \class FullPivHouseholderQR
37
+ *
38
+ * \brief Householder rank-revealing QR decomposition of a matrix with full pivoting
39
+ *
40
+ * \tparam _MatrixType the type of the matrix of which we are computing the QR decomposition
41
+ *
42
+ * This class performs a rank-revealing QR decomposition of a matrix \b A into matrices \b P, \b P', \b Q and \b R
43
+ * such that
44
+ * \f[
45
+ * \mathbf{P} \, \mathbf{A} \, \mathbf{P}' = \mathbf{Q} \, \mathbf{R}
46
+ * \f]
47
+ * by using Householder transformations. Here, \b P and \b P' are permutation matrices, \b Q a unitary matrix
48
+ * and \b R an upper triangular matrix.
49
+ *
50
+ * This decomposition performs a very prudent full pivoting in order to be rank-revealing and achieve optimal
51
+ * numerical stability. The trade-off is that it is slower than HouseholderQR and ColPivHouseholderQR.
52
+ *
53
+ * This class supports the \link InplaceDecomposition inplace decomposition \endlink mechanism.
54
+ *
55
+ * \sa MatrixBase::fullPivHouseholderQr()
56
+ */
57
+ template<typename _MatrixType> class FullPivHouseholderQR
58
+ {
59
+ public:
60
+
61
+ typedef _MatrixType MatrixType;
62
+ enum {
63
+ RowsAtCompileTime = MatrixType::RowsAtCompileTime,
64
+ ColsAtCompileTime = MatrixType::ColsAtCompileTime,
65
+ MaxRowsAtCompileTime = MatrixType::MaxRowsAtCompileTime,
66
+ MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime
67
+ };
68
+ typedef typename MatrixType::Scalar Scalar;
69
+ typedef typename MatrixType::RealScalar RealScalar;
70
+ // FIXME should be int
71
+ typedef typename MatrixType::StorageIndex StorageIndex;
72
+ typedef internal::FullPivHouseholderQRMatrixQReturnType<MatrixType> MatrixQReturnType;
73
+ typedef typename internal::plain_diag_type<MatrixType>::type HCoeffsType;
74
+ typedef Matrix<StorageIndex, 1,
75
+ EIGEN_SIZE_MIN_PREFER_DYNAMIC(ColsAtCompileTime,RowsAtCompileTime), RowMajor, 1,
76
+ EIGEN_SIZE_MIN_PREFER_FIXED(MaxColsAtCompileTime,MaxRowsAtCompileTime)> IntDiagSizeVectorType;
77
+ typedef PermutationMatrix<ColsAtCompileTime, MaxColsAtCompileTime> PermutationType;
78
+ typedef typename internal::plain_row_type<MatrixType>::type RowVectorType;
79
+ typedef typename internal::plain_col_type<MatrixType>::type ColVectorType;
80
+ typedef typename MatrixType::PlainObject PlainObject;
81
+
82
+ /** \brief Default Constructor.
83
+ *
84
+ * The default constructor is useful in cases in which the user intends to
85
+ * perform decompositions via FullPivHouseholderQR::compute(const MatrixType&).
86
+ */
87
+ FullPivHouseholderQR()
88
+ : m_qr(),
89
+ m_hCoeffs(),
90
+ m_rows_transpositions(),
91
+ m_cols_transpositions(),
92
+ m_cols_permutation(),
93
+ m_temp(),
94
+ m_isInitialized(false),
95
+ m_usePrescribedThreshold(false) {}
96
+
97
+ /** \brief Default Constructor with memory preallocation
98
+ *
99
+ * Like the default constructor but with preallocation of the internal data
100
+ * according to the specified problem \a size.
101
+ * \sa FullPivHouseholderQR()
102
+ */
103
+ FullPivHouseholderQR(Index rows, Index cols)
104
+ : m_qr(rows, cols),
105
+ m_hCoeffs((std::min)(rows,cols)),
106
+ m_rows_transpositions((std::min)(rows,cols)),
107
+ m_cols_transpositions((std::min)(rows,cols)),
108
+ m_cols_permutation(cols),
109
+ m_temp(cols),
110
+ m_isInitialized(false),
111
+ m_usePrescribedThreshold(false) {}
112
+
113
+ /** \brief Constructs a QR factorization from a given matrix
114
+ *
115
+ * This constructor computes the QR factorization of the matrix \a matrix by calling
116
+ * the method compute(). It is a short cut for:
117
+ *
118
+ * \code
119
+ * FullPivHouseholderQR<MatrixType> qr(matrix.rows(), matrix.cols());
120
+ * qr.compute(matrix);
121
+ * \endcode
122
+ *
123
+ * \sa compute()
124
+ */
125
+ template<typename InputType>
126
+ explicit FullPivHouseholderQR(const EigenBase<InputType>& matrix)
127
+ : m_qr(matrix.rows(), matrix.cols()),
128
+ m_hCoeffs((std::min)(matrix.rows(), matrix.cols())),
129
+ m_rows_transpositions((std::min)(matrix.rows(), matrix.cols())),
130
+ m_cols_transpositions((std::min)(matrix.rows(), matrix.cols())),
131
+ m_cols_permutation(matrix.cols()),
132
+ m_temp(matrix.cols()),
133
+ m_isInitialized(false),
134
+ m_usePrescribedThreshold(false)
135
+ {
136
+ compute(matrix.derived());
137
+ }
138
+
139
+ /** \brief Constructs a QR factorization from a given matrix
140
+ *
141
+ * This overloaded constructor is provided for \link InplaceDecomposition inplace decomposition \endlink when \c MatrixType is a Eigen::Ref.
142
+ *
143
+ * \sa FullPivHouseholderQR(const EigenBase&)
144
+ */
145
+ template<typename InputType>
146
+ explicit FullPivHouseholderQR(EigenBase<InputType>& matrix)
147
+ : m_qr(matrix.derived()),
148
+ m_hCoeffs((std::min)(matrix.rows(), matrix.cols())),
149
+ m_rows_transpositions((std::min)(matrix.rows(), matrix.cols())),
150
+ m_cols_transpositions((std::min)(matrix.rows(), matrix.cols())),
151
+ m_cols_permutation(matrix.cols()),
152
+ m_temp(matrix.cols()),
153
+ m_isInitialized(false),
154
+ m_usePrescribedThreshold(false)
155
+ {
156
+ computeInPlace();
157
+ }
158
+
159
+ /** This method finds a solution x to the equation Ax=b, where A is the matrix of which
160
+ * \c *this is the QR decomposition.
161
+ *
162
+ * \param b the right-hand-side of the equation to solve.
163
+ *
164
+ * \returns the exact or least-square solution if the rank is greater or equal to the number of columns of A,
165
+ * and an arbitrary solution otherwise.
166
+ *
167
+ * \note_about_checking_solutions
168
+ *
169
+ * \note_about_arbitrary_choice_of_solution
170
+ *
171
+ * Example: \include FullPivHouseholderQR_solve.cpp
172
+ * Output: \verbinclude FullPivHouseholderQR_solve.out
173
+ */
174
+ template<typename Rhs>
175
+ inline const Solve<FullPivHouseholderQR, Rhs>
176
+ solve(const MatrixBase<Rhs>& b) const
177
+ {
178
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
179
+ return Solve<FullPivHouseholderQR, Rhs>(*this, b.derived());
180
+ }
181
+
182
+ /** \returns Expression object representing the matrix Q
183
+ */
184
+ MatrixQReturnType matrixQ(void) const;
185
+
186
+ /** \returns a reference to the matrix where the Householder QR decomposition is stored
187
+ */
188
+ const MatrixType& matrixQR() const
189
+ {
190
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
191
+ return m_qr;
192
+ }
193
+
194
+ template<typename InputType>
195
+ FullPivHouseholderQR& compute(const EigenBase<InputType>& matrix);
196
+
197
+ /** \returns a const reference to the column permutation matrix */
198
+ const PermutationType& colsPermutation() const
199
+ {
200
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
201
+ return m_cols_permutation;
202
+ }
203
+
204
+ /** \returns a const reference to the vector of indices representing the rows transpositions */
205
+ const IntDiagSizeVectorType& rowsTranspositions() const
206
+ {
207
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
208
+ return m_rows_transpositions;
209
+ }
210
+
211
+ /** \returns the absolute value of the determinant of the matrix of which
212
+ * *this is the QR decomposition. It has only linear complexity
213
+ * (that is, O(n) where n is the dimension of the square matrix)
214
+ * as the QR decomposition has already been computed.
215
+ *
216
+ * \note This is only for square matrices.
217
+ *
218
+ * \warning a determinant can be very big or small, so for matrices
219
+ * of large enough dimension, there is a risk of overflow/underflow.
220
+ * One way to work around that is to use logAbsDeterminant() instead.
221
+ *
222
+ * \sa logAbsDeterminant(), MatrixBase::determinant()
223
+ */
224
+ typename MatrixType::RealScalar absDeterminant() const;
225
+
226
+ /** \returns the natural log of the absolute value of the determinant of the matrix of which
227
+ * *this is the QR decomposition. It has only linear complexity
228
+ * (that is, O(n) where n is the dimension of the square matrix)
229
+ * as the QR decomposition has already been computed.
230
+ *
231
+ * \note This is only for square matrices.
232
+ *
233
+ * \note This method is useful to work around the risk of overflow/underflow that's inherent
234
+ * to determinant computation.
235
+ *
236
+ * \sa absDeterminant(), MatrixBase::determinant()
237
+ */
238
+ typename MatrixType::RealScalar logAbsDeterminant() const;
239
+
240
+ /** \returns the rank of the matrix of which *this is the QR decomposition.
241
+ *
242
+ * \note This method has to determine which pivots should be considered nonzero.
243
+ * For that, it uses the threshold value that you can control by calling
244
+ * setThreshold(const RealScalar&).
245
+ */
246
+ inline Index rank() const
247
+ {
248
+ using std::abs;
249
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
250
+ RealScalar premultiplied_threshold = abs(m_maxpivot) * threshold();
251
+ Index result = 0;
252
+ for(Index i = 0; i < m_nonzero_pivots; ++i)
253
+ result += (abs(m_qr.coeff(i,i)) > premultiplied_threshold);
254
+ return result;
255
+ }
256
+
257
+ /** \returns the dimension of the kernel of the matrix of which *this is the QR decomposition.
258
+ *
259
+ * \note This method has to determine which pivots should be considered nonzero.
260
+ * For that, it uses the threshold value that you can control by calling
261
+ * setThreshold(const RealScalar&).
262
+ */
263
+ inline Index dimensionOfKernel() const
264
+ {
265
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
266
+ return cols() - rank();
267
+ }
268
+
269
+ /** \returns true if the matrix of which *this is the QR decomposition represents an injective
270
+ * linear map, i.e. has trivial kernel; false otherwise.
271
+ *
272
+ * \note This method has to determine which pivots should be considered nonzero.
273
+ * For that, it uses the threshold value that you can control by calling
274
+ * setThreshold(const RealScalar&).
275
+ */
276
+ inline bool isInjective() const
277
+ {
278
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
279
+ return rank() == cols();
280
+ }
281
+
282
+ /** \returns true if the matrix of which *this is the QR decomposition represents a surjective
283
+ * linear map; false otherwise.
284
+ *
285
+ * \note This method has to determine which pivots should be considered nonzero.
286
+ * For that, it uses the threshold value that you can control by calling
287
+ * setThreshold(const RealScalar&).
288
+ */
289
+ inline bool isSurjective() const
290
+ {
291
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
292
+ return rank() == rows();
293
+ }
294
+
295
+ /** \returns true if the matrix of which *this is the QR decomposition is invertible.
296
+ *
297
+ * \note This method has to determine which pivots should be considered nonzero.
298
+ * For that, it uses the threshold value that you can control by calling
299
+ * setThreshold(const RealScalar&).
300
+ */
301
+ inline bool isInvertible() const
302
+ {
303
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
304
+ return isInjective() && isSurjective();
305
+ }
306
+
307
+ /** \returns the inverse of the matrix of which *this is the QR decomposition.
308
+ *
309
+ * \note If this matrix is not invertible, the returned matrix has undefined coefficients.
310
+ * Use isInvertible() to first determine whether this matrix is invertible.
311
+ */
312
+ inline const Inverse<FullPivHouseholderQR> inverse() const
313
+ {
314
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
315
+ return Inverse<FullPivHouseholderQR>(*this);
316
+ }
317
+
318
+ inline Index rows() const { return m_qr.rows(); }
319
+ inline Index cols() const { return m_qr.cols(); }
320
+
321
+ /** \returns a const reference to the vector of Householder coefficients used to represent the factor \c Q.
322
+ *
323
+ * For advanced uses only.
324
+ */
325
+ const HCoeffsType& hCoeffs() const { return m_hCoeffs; }
326
+
327
+ /** Allows to prescribe a threshold to be used by certain methods, such as rank(),
328
+ * who need to determine when pivots are to be considered nonzero. This is not used for the
329
+ * QR decomposition itself.
330
+ *
331
+ * When it needs to get the threshold value, Eigen calls threshold(). By default, this
332
+ * uses a formula to automatically determine a reasonable threshold.
333
+ * Once you have called the present method setThreshold(const RealScalar&),
334
+ * your value is used instead.
335
+ *
336
+ * \param threshold The new value to use as the threshold.
337
+ *
338
+ * A pivot will be considered nonzero if its absolute value is strictly greater than
339
+ * \f$ \vert pivot \vert \leqslant threshold \times \vert maxpivot \vert \f$
340
+ * where maxpivot is the biggest pivot.
341
+ *
342
+ * If you want to come back to the default behavior, call setThreshold(Default_t)
343
+ */
344
+ FullPivHouseholderQR& setThreshold(const RealScalar& threshold)
345
+ {
346
+ m_usePrescribedThreshold = true;
347
+ m_prescribedThreshold = threshold;
348
+ return *this;
349
+ }
350
+
351
+ /** Allows to come back to the default behavior, letting Eigen use its default formula for
352
+ * determining the threshold.
353
+ *
354
+ * You should pass the special object Eigen::Default as parameter here.
355
+ * \code qr.setThreshold(Eigen::Default); \endcode
356
+ *
357
+ * See the documentation of setThreshold(const RealScalar&).
358
+ */
359
+ FullPivHouseholderQR& setThreshold(Default_t)
360
+ {
361
+ m_usePrescribedThreshold = false;
362
+ return *this;
363
+ }
364
+
365
+ /** Returns the threshold that will be used by certain methods such as rank().
366
+ *
367
+ * See the documentation of setThreshold(const RealScalar&).
368
+ */
369
+ RealScalar threshold() const
370
+ {
371
+ eigen_assert(m_isInitialized || m_usePrescribedThreshold);
372
+ return m_usePrescribedThreshold ? m_prescribedThreshold
373
+ // this formula comes from experimenting (see "LU precision tuning" thread on the list)
374
+ // and turns out to be identical to Higham's formula used already in LDLt.
375
+ : NumTraits<Scalar>::epsilon() * RealScalar(m_qr.diagonalSize());
376
+ }
377
+
378
+ /** \returns the number of nonzero pivots in the QR decomposition.
379
+ * Here nonzero is meant in the exact sense, not in a fuzzy sense.
380
+ * So that notion isn't really intrinsically interesting, but it is
381
+ * still useful when implementing algorithms.
382
+ *
383
+ * \sa rank()
384
+ */
385
+ inline Index nonzeroPivots() const
386
+ {
387
+ eigen_assert(m_isInitialized && "LU is not initialized.");
388
+ return m_nonzero_pivots;
389
+ }
390
+
391
+ /** \returns the absolute value of the biggest pivot, i.e. the biggest
392
+ * diagonal coefficient of U.
393
+ */
394
+ RealScalar maxPivot() const { return m_maxpivot; }
395
+
396
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
397
+ template<typename RhsType, typename DstType>
398
+ EIGEN_DEVICE_FUNC
399
+ void _solve_impl(const RhsType &rhs, DstType &dst) const;
400
+ #endif
401
+
402
+ protected:
403
+
404
+ static void check_template_parameters()
405
+ {
406
+ EIGEN_STATIC_ASSERT_NON_INTEGER(Scalar);
407
+ }
408
+
409
+ void computeInPlace();
410
+
411
+ MatrixType m_qr;
412
+ HCoeffsType m_hCoeffs;
413
+ IntDiagSizeVectorType m_rows_transpositions;
414
+ IntDiagSizeVectorType m_cols_transpositions;
415
+ PermutationType m_cols_permutation;
416
+ RowVectorType m_temp;
417
+ bool m_isInitialized, m_usePrescribedThreshold;
418
+ RealScalar m_prescribedThreshold, m_maxpivot;
419
+ Index m_nonzero_pivots;
420
+ RealScalar m_precision;
421
+ Index m_det_pq;
422
+ };
423
+
424
+ template<typename MatrixType>
425
+ typename MatrixType::RealScalar FullPivHouseholderQR<MatrixType>::absDeterminant() const
426
+ {
427
+ using std::abs;
428
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
429
+ eigen_assert(m_qr.rows() == m_qr.cols() && "You can't take the determinant of a non-square matrix!");
430
+ return abs(m_qr.diagonal().prod());
431
+ }
432
+
433
+ template<typename MatrixType>
434
+ typename MatrixType::RealScalar FullPivHouseholderQR<MatrixType>::logAbsDeterminant() const
435
+ {
436
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
437
+ eigen_assert(m_qr.rows() == m_qr.cols() && "You can't take the determinant of a non-square matrix!");
438
+ return m_qr.diagonal().cwiseAbs().array().log().sum();
439
+ }
440
+
441
+ /** Performs the QR factorization of the given matrix \a matrix. The result of
442
+ * the factorization is stored into \c *this, and a reference to \c *this
443
+ * is returned.
444
+ *
445
+ * \sa class FullPivHouseholderQR, FullPivHouseholderQR(const MatrixType&)
446
+ */
447
+ template<typename MatrixType>
448
+ template<typename InputType>
449
+ FullPivHouseholderQR<MatrixType>& FullPivHouseholderQR<MatrixType>::compute(const EigenBase<InputType>& matrix)
450
+ {
451
+ m_qr = matrix.derived();
452
+ computeInPlace();
453
+ return *this;
454
+ }
455
+
456
+ template<typename MatrixType>
457
+ void FullPivHouseholderQR<MatrixType>::computeInPlace()
458
+ {
459
+ check_template_parameters();
460
+
461
+ using std::abs;
462
+ Index rows = m_qr.rows();
463
+ Index cols = m_qr.cols();
464
+ Index size = (std::min)(rows,cols);
465
+
466
+
467
+ m_hCoeffs.resize(size);
468
+
469
+ m_temp.resize(cols);
470
+
471
+ m_precision = NumTraits<Scalar>::epsilon() * RealScalar(size);
472
+
473
+ m_rows_transpositions.resize(size);
474
+ m_cols_transpositions.resize(size);
475
+ Index number_of_transpositions = 0;
476
+
477
+ RealScalar biggest(0);
478
+
479
+ m_nonzero_pivots = size; // the generic case is that in which all pivots are nonzero (invertible case)
480
+ m_maxpivot = RealScalar(0);
481
+
482
+ for (Index k = 0; k < size; ++k)
483
+ {
484
+ Index row_of_biggest_in_corner, col_of_biggest_in_corner;
485
+ typedef internal::scalar_score_coeff_op<Scalar> Scoring;
486
+ typedef typename Scoring::result_type Score;
487
+
488
+ Score score = m_qr.bottomRightCorner(rows-k, cols-k)
489
+ .unaryExpr(Scoring())
490
+ .maxCoeff(&row_of_biggest_in_corner, &col_of_biggest_in_corner);
491
+ row_of_biggest_in_corner += k;
492
+ col_of_biggest_in_corner += k;
493
+ RealScalar biggest_in_corner = internal::abs_knowing_score<Scalar>()(m_qr(row_of_biggest_in_corner, col_of_biggest_in_corner), score);
494
+ if(k==0) biggest = biggest_in_corner;
495
+
496
+ // if the corner is negligible, then we have less than full rank, and we can finish early
497
+ if(internal::isMuchSmallerThan(biggest_in_corner, biggest, m_precision))
498
+ {
499
+ m_nonzero_pivots = k;
500
+ for(Index i = k; i < size; i++)
501
+ {
502
+ m_rows_transpositions.coeffRef(i) = i;
503
+ m_cols_transpositions.coeffRef(i) = i;
504
+ m_hCoeffs.coeffRef(i) = Scalar(0);
505
+ }
506
+ break;
507
+ }
508
+
509
+ m_rows_transpositions.coeffRef(k) = row_of_biggest_in_corner;
510
+ m_cols_transpositions.coeffRef(k) = col_of_biggest_in_corner;
511
+ if(k != row_of_biggest_in_corner) {
512
+ m_qr.row(k).tail(cols-k).swap(m_qr.row(row_of_biggest_in_corner).tail(cols-k));
513
+ ++number_of_transpositions;
514
+ }
515
+ if(k != col_of_biggest_in_corner) {
516
+ m_qr.col(k).swap(m_qr.col(col_of_biggest_in_corner));
517
+ ++number_of_transpositions;
518
+ }
519
+
520
+ RealScalar beta;
521
+ m_qr.col(k).tail(rows-k).makeHouseholderInPlace(m_hCoeffs.coeffRef(k), beta);
522
+ m_qr.coeffRef(k,k) = beta;
523
+
524
+ // remember the maximum absolute value of diagonal coefficients
525
+ if(abs(beta) > m_maxpivot) m_maxpivot = abs(beta);
526
+
527
+ m_qr.bottomRightCorner(rows-k, cols-k-1)
528
+ .applyHouseholderOnTheLeft(m_qr.col(k).tail(rows-k-1), m_hCoeffs.coeffRef(k), &m_temp.coeffRef(k+1));
529
+ }
530
+
531
+ m_cols_permutation.setIdentity(cols);
532
+ for(Index k = 0; k < size; ++k)
533
+ m_cols_permutation.applyTranspositionOnTheRight(k, m_cols_transpositions.coeff(k));
534
+
535
+ m_det_pq = (number_of_transpositions%2) ? -1 : 1;
536
+ m_isInitialized = true;
537
+ }
538
+
539
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
540
+ template<typename _MatrixType>
541
+ template<typename RhsType, typename DstType>
542
+ void FullPivHouseholderQR<_MatrixType>::_solve_impl(const RhsType &rhs, DstType &dst) const
543
+ {
544
+ eigen_assert(rhs.rows() == rows());
545
+ const Index l_rank = rank();
546
+
547
+ // FIXME introduce nonzeroPivots() and use it here. and more generally,
548
+ // make the same improvements in this dec as in FullPivLU.
549
+ if(l_rank==0)
550
+ {
551
+ dst.setZero();
552
+ return;
553
+ }
554
+
555
+ typename RhsType::PlainObject c(rhs);
556
+
557
+ Matrix<Scalar,1,RhsType::ColsAtCompileTime> temp(rhs.cols());
558
+ for (Index k = 0; k < l_rank; ++k)
559
+ {
560
+ Index remainingSize = rows()-k;
561
+ c.row(k).swap(c.row(m_rows_transpositions.coeff(k)));
562
+ c.bottomRightCorner(remainingSize, rhs.cols())
563
+ .applyHouseholderOnTheLeft(m_qr.col(k).tail(remainingSize-1),
564
+ m_hCoeffs.coeff(k), &temp.coeffRef(0));
565
+ }
566
+
567
+ m_qr.topLeftCorner(l_rank, l_rank)
568
+ .template triangularView<Upper>()
569
+ .solveInPlace(c.topRows(l_rank));
570
+
571
+ for(Index i = 0; i < l_rank; ++i) dst.row(m_cols_permutation.indices().coeff(i)) = c.row(i);
572
+ for(Index i = l_rank; i < cols(); ++i) dst.row(m_cols_permutation.indices().coeff(i)).setZero();
573
+ }
574
+ #endif
575
+
576
+ namespace internal {
577
+
578
+ template<typename DstXprType, typename MatrixType>
579
+ struct Assignment<DstXprType, Inverse<FullPivHouseholderQR<MatrixType> >, internal::assign_op<typename DstXprType::Scalar,typename FullPivHouseholderQR<MatrixType>::Scalar>, Dense2Dense>
580
+ {
581
+ typedef FullPivHouseholderQR<MatrixType> QrType;
582
+ typedef Inverse<QrType> SrcXprType;
583
+ static void run(DstXprType &dst, const SrcXprType &src, const internal::assign_op<typename DstXprType::Scalar,typename QrType::Scalar> &)
584
+ {
585
+ dst = src.nestedExpression().solve(MatrixType::Identity(src.rows(), src.cols()));
586
+ }
587
+ };
588
+
589
+ /** \ingroup QR_Module
590
+ *
591
+ * \brief Expression type for return value of FullPivHouseholderQR::matrixQ()
592
+ *
593
+ * \tparam MatrixType type of underlying dense matrix
594
+ */
595
+ template<typename MatrixType> struct FullPivHouseholderQRMatrixQReturnType
596
+ : public ReturnByValue<FullPivHouseholderQRMatrixQReturnType<MatrixType> >
597
+ {
598
+ public:
599
+ typedef typename FullPivHouseholderQR<MatrixType>::IntDiagSizeVectorType IntDiagSizeVectorType;
600
+ typedef typename internal::plain_diag_type<MatrixType>::type HCoeffsType;
601
+ typedef Matrix<typename MatrixType::Scalar, 1, MatrixType::RowsAtCompileTime, RowMajor, 1,
602
+ MatrixType::MaxRowsAtCompileTime> WorkVectorType;
603
+
604
+ FullPivHouseholderQRMatrixQReturnType(const MatrixType& qr,
605
+ const HCoeffsType& hCoeffs,
606
+ const IntDiagSizeVectorType& rowsTranspositions)
607
+ : m_qr(qr),
608
+ m_hCoeffs(hCoeffs),
609
+ m_rowsTranspositions(rowsTranspositions)
610
+ {}
611
+
612
+ template <typename ResultType>
613
+ void evalTo(ResultType& result) const
614
+ {
615
+ const Index rows = m_qr.rows();
616
+ WorkVectorType workspace(rows);
617
+ evalTo(result, workspace);
618
+ }
619
+
620
+ template <typename ResultType>
621
+ void evalTo(ResultType& result, WorkVectorType& workspace) const
622
+ {
623
+ using numext::conj;
624
+ // compute the product H'_0 H'_1 ... H'_n-1,
625
+ // where H_k is the k-th Householder transformation I - h_k v_k v_k'
626
+ // and v_k is the k-th Householder vector [1,m_qr(k+1,k), m_qr(k+2,k), ...]
627
+ const Index rows = m_qr.rows();
628
+ const Index cols = m_qr.cols();
629
+ const Index size = (std::min)(rows, cols);
630
+ workspace.resize(rows);
631
+ result.setIdentity(rows, rows);
632
+ for (Index k = size-1; k >= 0; k--)
633
+ {
634
+ result.block(k, k, rows-k, rows-k)
635
+ .applyHouseholderOnTheLeft(m_qr.col(k).tail(rows-k-1), conj(m_hCoeffs.coeff(k)), &workspace.coeffRef(k));
636
+ result.row(k).swap(result.row(m_rowsTranspositions.coeff(k)));
637
+ }
638
+ }
639
+
640
+ Index rows() const { return m_qr.rows(); }
641
+ Index cols() const { return m_qr.rows(); }
642
+
643
+ protected:
644
+ typename MatrixType::Nested m_qr;
645
+ typename HCoeffsType::Nested m_hCoeffs;
646
+ typename IntDiagSizeVectorType::Nested m_rowsTranspositions;
647
+ };
648
+
649
+ // template<typename MatrixType>
650
+ // struct evaluator<FullPivHouseholderQRMatrixQReturnType<MatrixType> >
651
+ // : public evaluator<ReturnByValue<FullPivHouseholderQRMatrixQReturnType<MatrixType> > >
652
+ // {};
653
+
654
+ } // end namespace internal
655
+
656
+ template<typename MatrixType>
657
+ inline typename FullPivHouseholderQR<MatrixType>::MatrixQReturnType FullPivHouseholderQR<MatrixType>::matrixQ() const
658
+ {
659
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
660
+ return MatrixQReturnType(m_qr, m_hCoeffs, m_rows_transpositions);
661
+ }
662
+
663
+ /** \return the full-pivoting Householder QR decomposition of \c *this.
664
+ *
665
+ * \sa class FullPivHouseholderQR
666
+ */
667
+ template<typename Derived>
668
+ const FullPivHouseholderQR<typename MatrixBase<Derived>::PlainObject>
669
+ MatrixBase<Derived>::fullPivHouseholderQr() const
670
+ {
671
+ return FullPivHouseholderQR<PlainObject>(eval());
672
+ }
673
+
674
+ } // end namespace Eigen
675
+
676
+ #endif // EIGEN_FULLPIVOTINGHOUSEHOLDERQR_H