tomoto 0.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +7 -0
- data/CHANGELOG.md +3 -0
- data/LICENSE.txt +22 -0
- data/README.md +123 -0
- data/ext/tomoto/ext.cpp +245 -0
- data/ext/tomoto/extconf.rb +28 -0
- data/lib/tomoto.rb +12 -0
- data/lib/tomoto/ct.rb +11 -0
- data/lib/tomoto/hdp.rb +11 -0
- data/lib/tomoto/lda.rb +67 -0
- data/lib/tomoto/version.rb +3 -0
- data/vendor/EigenRand/EigenRand/Core.h +1139 -0
- data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
- data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
- data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
- data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
- data/vendor/EigenRand/EigenRand/EigenRand +19 -0
- data/vendor/EigenRand/EigenRand/Macro.h +24 -0
- data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
- data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
- data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
- data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
- data/vendor/EigenRand/EigenRand/doc.h +220 -0
- data/vendor/EigenRand/LICENSE +21 -0
- data/vendor/EigenRand/README.md +288 -0
- data/vendor/eigen/COPYING.BSD +26 -0
- data/vendor/eigen/COPYING.GPL +674 -0
- data/vendor/eigen/COPYING.LGPL +502 -0
- data/vendor/eigen/COPYING.MINPACK +52 -0
- data/vendor/eigen/COPYING.MPL2 +373 -0
- data/vendor/eigen/COPYING.README +18 -0
- data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
- data/vendor/eigen/Eigen/Cholesky +46 -0
- data/vendor/eigen/Eigen/CholmodSupport +48 -0
- data/vendor/eigen/Eigen/Core +537 -0
- data/vendor/eigen/Eigen/Dense +7 -0
- data/vendor/eigen/Eigen/Eigen +2 -0
- data/vendor/eigen/Eigen/Eigenvalues +61 -0
- data/vendor/eigen/Eigen/Geometry +62 -0
- data/vendor/eigen/Eigen/Householder +30 -0
- data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
- data/vendor/eigen/Eigen/Jacobi +33 -0
- data/vendor/eigen/Eigen/LU +50 -0
- data/vendor/eigen/Eigen/MetisSupport +35 -0
- data/vendor/eigen/Eigen/OrderingMethods +73 -0
- data/vendor/eigen/Eigen/PaStiXSupport +48 -0
- data/vendor/eigen/Eigen/PardisoSupport +35 -0
- data/vendor/eigen/Eigen/QR +51 -0
- data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
- data/vendor/eigen/Eigen/SPQRSupport +34 -0
- data/vendor/eigen/Eigen/SVD +51 -0
- data/vendor/eigen/Eigen/Sparse +36 -0
- data/vendor/eigen/Eigen/SparseCholesky +45 -0
- data/vendor/eigen/Eigen/SparseCore +69 -0
- data/vendor/eigen/Eigen/SparseLU +46 -0
- data/vendor/eigen/Eigen/SparseQR +37 -0
- data/vendor/eigen/Eigen/StdDeque +27 -0
- data/vendor/eigen/Eigen/StdList +26 -0
- data/vendor/eigen/Eigen/StdVector +27 -0
- data/vendor/eigen/Eigen/SuperLUSupport +64 -0
- data/vendor/eigen/Eigen/UmfPackSupport +40 -0
- data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
- data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
- data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
- data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
- data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
- data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
- data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
- data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
- data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
- data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
- data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
- data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
- data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
- data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
- data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
- data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
- data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
- data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
- data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
- data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
- data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
- data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
- data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
- data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
- data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
- data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
- data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
- data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
- data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
- data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
- data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
- data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
- data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
- data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
- data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
- data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
- data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
- data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
- data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
- data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
- data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
- data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
- data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
- data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
- data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
- data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
- data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
- data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
- data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
- data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
- data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
- data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
- data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
- data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
- data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
- data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
- data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
- data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
- data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
- data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
- data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
- data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
- data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
- data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
- data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
- data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
- data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
- data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
- data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
- data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
- data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
- data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
- data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
- data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
- data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
- data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
- data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
- data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
- data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
- data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
- data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
- data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
- data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
- data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
- data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
- data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
- data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
- data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
- data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
- data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
- data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
- data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
- data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
- data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
- data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
- data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
- data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
- data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
- data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
- data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
- data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
- data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
- data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
- data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
- data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
- data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
- data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
- data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
- data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
- data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
- data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
- data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
- data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
- data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
- data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
- data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
- data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
- data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
- data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
- data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
- data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
- data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
- data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
- data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
- data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
- data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
- data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
- data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
- data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
- data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
- data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
- data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
- data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
- data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
- data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
- data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
- data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
- data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +126 -0
- data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
- data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
- data/vendor/eigen/Eigen/src/StlSupport/details.h +84 -0
- data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
- data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
- data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
- data/vendor/eigen/Eigen/src/misc/Kernel.h +79 -0
- data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
- data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
- data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
- data/vendor/eigen/Eigen/src/misc/lapacke.h +16291 -0
- data/vendor/eigen/Eigen/src/misc/lapacke_mangling.h +17 -0
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +332 -0
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
- data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
- data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
- data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +163 -0
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
- data/vendor/eigen/README.md +3 -0
- data/vendor/eigen/bench/README.txt +55 -0
- data/vendor/eigen/bench/btl/COPYING +340 -0
- data/vendor/eigen/bench/btl/README +154 -0
- data/vendor/eigen/bench/tensors/README +21 -0
- data/vendor/eigen/blas/README.txt +6 -0
- data/vendor/eigen/demos/mandelbrot/README +10 -0
- data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
- data/vendor/eigen/demos/opengl/README +13 -0
- data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
- data/vendor/eigen/unsupported/README.txt +50 -0
- data/vendor/tomotopy/LICENSE +21 -0
- data/vendor/tomotopy/README.kr.rst +375 -0
- data/vendor/tomotopy/README.rst +382 -0
- data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
- data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
- data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
- data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
- data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
- data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
- data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
- data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
- data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
- data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
- data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
- data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
- data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
- data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
- data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
- data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
- data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
- data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
- data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
- data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
- data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
- data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
- data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
- data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
- data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
- data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
- data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
- data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
- data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
- data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
- data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
- data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
- data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
- data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
- data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
- data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
- data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
- data/vendor/tomotopy/src/Utils/AliasMethod.hpp +169 -0
- data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
- data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
- data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
- data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
- data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
- data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
- data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
- data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
- data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
- data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
- data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
- data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
- data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
- data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
- data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
- data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
- data/vendor/tomotopy/src/Utils/exception.h +28 -0
- data/vendor/tomotopy/src/Utils/math.h +281 -0
- data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
- data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
- data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
- data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
- data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
- data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
- data/vendor/tomotopy/src/Utils/text.hpp +49 -0
- data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
- metadata +531 -0
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/*
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Copyright (c) 2011, Intel Corporation. All rights reserved.
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Redistribution and use in source and binary forms, with or without modification,
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are permitted provided that the following conditions are met:
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* Redistributions of source code must retain the above copyright notice, this
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list of conditions and the following disclaimer.
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* Redistributions in binary form must reproduce the above copyright notice,
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this list of conditions and the following disclaimer in the documentation
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and/or other materials provided with the distribution.
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* Neither the name of Intel Corporation nor the names of its contributors may
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be used to endorse or promote products derived from this software without
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specific prior written permission.
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
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ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
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WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
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ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
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(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
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LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
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ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
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SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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********************************************************************************
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* Content : Eigen bindings to LAPACKe
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* Singular Value Decomposition - SVD.
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********************************************************************************
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*/
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#ifndef EIGEN_JACOBISVD_LAPACKE_H
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#define EIGEN_JACOBISVD_LAPACKE_H
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namespace Eigen {
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/** \internal Specialization for the data types supported by LAPACKe */
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#define EIGEN_LAPACKE_SVD(EIGTYPE, LAPACKE_TYPE, LAPACKE_RTYPE, LAPACKE_PREFIX, EIGCOLROW, LAPACKE_COLROW) \
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template<> inline \
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JacobiSVD<Matrix<EIGTYPE, Dynamic, Dynamic, EIGCOLROW, Dynamic, Dynamic>, ColPivHouseholderQRPreconditioner>& \
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JacobiSVD<Matrix<EIGTYPE, Dynamic, Dynamic, EIGCOLROW, Dynamic, Dynamic>, ColPivHouseholderQRPreconditioner>::compute(const Matrix<EIGTYPE, Dynamic, Dynamic, EIGCOLROW, Dynamic, Dynamic>& matrix, unsigned int computationOptions) \
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{ \
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typedef Matrix<EIGTYPE, Dynamic, Dynamic, EIGCOLROW, Dynamic, Dynamic> MatrixType; \
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/*typedef MatrixType::Scalar Scalar;*/ \
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/*typedef MatrixType::RealScalar RealScalar;*/ \
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allocate(matrix.rows(), matrix.cols(), computationOptions); \
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\
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/*const RealScalar precision = RealScalar(2) * NumTraits<Scalar>::epsilon();*/ \
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m_nonzeroSingularValues = m_diagSize; \
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\
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lapack_int lda = internal::convert_index<lapack_int>(matrix.outerStride()), ldu, ldvt; \
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lapack_int matrix_order = LAPACKE_COLROW; \
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char jobu, jobvt; \
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LAPACKE_TYPE *u, *vt, dummy; \
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jobu = (m_computeFullU) ? 'A' : (m_computeThinU) ? 'S' : 'N'; \
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jobvt = (m_computeFullV) ? 'A' : (m_computeThinV) ? 'S' : 'N'; \
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if (computeU()) { \
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ldu = internal::convert_index<lapack_int>(m_matrixU.outerStride()); \
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u = (LAPACKE_TYPE*)m_matrixU.data(); \
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} else { ldu=1; u=&dummy; }\
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MatrixType localV; \
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lapack_int vt_rows = (m_computeFullV) ? internal::convert_index<lapack_int>(m_cols) : (m_computeThinV) ? internal::convert_index<lapack_int>(m_diagSize) : 1; \
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if (computeV()) { \
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localV.resize(vt_rows, m_cols); \
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ldvt = internal::convert_index<lapack_int>(localV.outerStride()); \
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vt = (LAPACKE_TYPE*)localV.data(); \
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} else { ldvt=1; vt=&dummy; }\
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Matrix<LAPACKE_RTYPE, Dynamic, Dynamic> superb; superb.resize(m_diagSize, 1); \
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MatrixType m_temp; m_temp = matrix; \
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LAPACKE_##LAPACKE_PREFIX##gesvd( matrix_order, jobu, jobvt, internal::convert_index<lapack_int>(m_rows), internal::convert_index<lapack_int>(m_cols), (LAPACKE_TYPE*)m_temp.data(), lda, (LAPACKE_RTYPE*)m_singularValues.data(), u, ldu, vt, ldvt, superb.data()); \
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if (computeV()) m_matrixV = localV.adjoint(); \
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/* for(int i=0;i<m_diagSize;i++) if (m_singularValues.coeffRef(i) < precision) { m_nonzeroSingularValues--; m_singularValues.coeffRef(i)=RealScalar(0);}*/ \
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m_isInitialized = true; \
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return *this; \
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}
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EIGEN_LAPACKE_SVD(double, double, double, d, ColMajor, LAPACK_COL_MAJOR)
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EIGEN_LAPACKE_SVD(float, float, float , s, ColMajor, LAPACK_COL_MAJOR)
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EIGEN_LAPACKE_SVD(dcomplex, lapack_complex_double, double, z, ColMajor, LAPACK_COL_MAJOR)
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EIGEN_LAPACKE_SVD(scomplex, lapack_complex_float, float , c, ColMajor, LAPACK_COL_MAJOR)
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EIGEN_LAPACKE_SVD(double, double, double, d, RowMajor, LAPACK_ROW_MAJOR)
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EIGEN_LAPACKE_SVD(float, float, float , s, RowMajor, LAPACK_ROW_MAJOR)
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EIGEN_LAPACKE_SVD(dcomplex, lapack_complex_double, double, z, RowMajor, LAPACK_ROW_MAJOR)
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EIGEN_LAPACKE_SVD(scomplex, lapack_complex_float, float , c, RowMajor, LAPACK_ROW_MAJOR)
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} // end namespace Eigen
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#endif // EIGEN_JACOBISVD_LAPACKE_H
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// This file is part of Eigen, a lightweight C++ template library
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// for linear algebra.
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//
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// Copyright (C) 2009-2010 Benoit Jacob <jacob.benoit.1@gmail.com>
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// Copyright (C) 2014 Gael Guennebaud <gael.guennebaud@inria.fr>
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//
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// Copyright (C) 2013 Gauthier Brun <brun.gauthier@gmail.com>
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// Copyright (C) 2013 Nicolas Carre <nicolas.carre@ensimag.fr>
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// Copyright (C) 2013 Jean Ceccato <jean.ceccato@ensimag.fr>
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// Copyright (C) 2013 Pierre Zoppitelli <pierre.zoppitelli@ensimag.fr>
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//
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// This Source Code Form is subject to the terms of the Mozilla
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// Public License v. 2.0. If a copy of the MPL was not distributed
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// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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#ifndef EIGEN_SVDBASE_H
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#define EIGEN_SVDBASE_H
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namespace Eigen {
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/** \ingroup SVD_Module
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*
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*
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* \class SVDBase
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*
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* \brief Base class of SVD algorithms
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*
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* \tparam Derived the type of the actual SVD decomposition
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*
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* SVD decomposition consists in decomposing any n-by-p matrix \a A as a product
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* \f[ A = U S V^* \f]
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* where \a U is a n-by-n unitary, \a V is a p-by-p unitary, and \a S is a n-by-p real positive matrix which is zero outside of its main diagonal;
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* the diagonal entries of S are known as the \em singular \em values of \a A and the columns of \a U and \a V are known as the left
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* and right \em singular \em vectors of \a A respectively.
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*
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* Singular values are always sorted in decreasing order.
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*
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*
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* You can ask for only \em thin \a U or \a V to be computed, meaning the following. In case of a rectangular n-by-p matrix, letting \a m be the
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* smaller value among \a n and \a p, there are only \a m singular vectors; the remaining columns of \a U and \a V do not correspond to actual
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* singular vectors. Asking for \em thin \a U or \a V means asking for only their \a m first columns to be formed. So \a U is then a n-by-m matrix,
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* and \a V is then a p-by-m matrix. Notice that thin \a U and \a V are all you need for (least squares) solving.
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*
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* If the input matrix has inf or nan coefficients, the result of the computation is undefined, but the computation is guaranteed to
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* terminate in finite (and reasonable) time.
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* \sa class BDCSVD, class JacobiSVD
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*/
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template<typename Derived>
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class SVDBase
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{
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public:
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typedef typename internal::traits<Derived>::MatrixType MatrixType;
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typedef typename MatrixType::Scalar Scalar;
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typedef typename NumTraits<typename MatrixType::Scalar>::Real RealScalar;
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typedef typename MatrixType::StorageIndex StorageIndex;
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typedef Eigen::Index Index; ///< \deprecated since Eigen 3.3
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enum {
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RowsAtCompileTime = MatrixType::RowsAtCompileTime,
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ColsAtCompileTime = MatrixType::ColsAtCompileTime,
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DiagSizeAtCompileTime = EIGEN_SIZE_MIN_PREFER_DYNAMIC(RowsAtCompileTime,ColsAtCompileTime),
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MaxRowsAtCompileTime = MatrixType::MaxRowsAtCompileTime,
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MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime,
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MaxDiagSizeAtCompileTime = EIGEN_SIZE_MIN_PREFER_FIXED(MaxRowsAtCompileTime,MaxColsAtCompileTime),
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MatrixOptions = MatrixType::Options
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};
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typedef Matrix<Scalar, RowsAtCompileTime, RowsAtCompileTime, MatrixOptions, MaxRowsAtCompileTime, MaxRowsAtCompileTime> MatrixUType;
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typedef Matrix<Scalar, ColsAtCompileTime, ColsAtCompileTime, MatrixOptions, MaxColsAtCompileTime, MaxColsAtCompileTime> MatrixVType;
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typedef typename internal::plain_diag_type<MatrixType, RealScalar>::type SingularValuesType;
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Derived& derived() { return *static_cast<Derived*>(this); }
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72
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+
const Derived& derived() const { return *static_cast<const Derived*>(this); }
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73
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+
|
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74
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+
/** \returns the \a U matrix.
|
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75
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+
*
|
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76
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+
* For the SVD decomposition of a n-by-p matrix, letting \a m be the minimum of \a n and \a p,
|
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77
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+
* the U matrix is n-by-n if you asked for \link Eigen::ComputeFullU ComputeFullU \endlink, and is n-by-m if you asked for \link Eigen::ComputeThinU ComputeThinU \endlink.
|
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78
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+
*
|
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79
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+
* The \a m first columns of \a U are the left singular vectors of the matrix being decomposed.
|
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80
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+
*
|
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81
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+
* This method asserts that you asked for \a U to be computed.
|
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82
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+
*/
|
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83
|
+
const MatrixUType& matrixU() const
|
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84
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+
{
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85
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+
eigen_assert(m_isInitialized && "SVD is not initialized.");
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86
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+
eigen_assert(computeU() && "This SVD decomposition didn't compute U. Did you ask for it?");
|
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87
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+
return m_matrixU;
|
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88
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+
}
|
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89
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+
|
|
90
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+
/** \returns the \a V matrix.
|
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91
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+
*
|
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92
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+
* For the SVD decomposition of a n-by-p matrix, letting \a m be the minimum of \a n and \a p,
|
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93
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+
* the V matrix is p-by-p if you asked for \link Eigen::ComputeFullV ComputeFullV \endlink, and is p-by-m if you asked for \link Eigen::ComputeThinV ComputeThinV \endlink.
|
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94
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+
*
|
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95
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+
* The \a m first columns of \a V are the right singular vectors of the matrix being decomposed.
|
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96
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+
*
|
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97
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+
* This method asserts that you asked for \a V to be computed.
|
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98
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+
*/
|
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99
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+
const MatrixVType& matrixV() const
|
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100
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+
{
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101
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+
eigen_assert(m_isInitialized && "SVD is not initialized.");
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+
eigen_assert(computeV() && "This SVD decomposition didn't compute V. Did you ask for it?");
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103
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+
return m_matrixV;
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104
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+
}
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+
|
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106
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+
/** \returns the vector of singular values.
|
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+
*
|
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108
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+
* For the SVD decomposition of a n-by-p matrix, letting \a m be the minimum of \a n and \a p, the
|
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109
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+
* returned vector has size \a m. Singular values are always sorted in decreasing order.
|
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110
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+
*/
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+
const SingularValuesType& singularValues() const
|
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+
{
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113
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eigen_assert(m_isInitialized && "SVD is not initialized.");
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+
return m_singularValues;
|
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115
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+
}
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116
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+
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117
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+
/** \returns the number of singular values that are not exactly 0 */
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118
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+
Index nonzeroSingularValues() const
|
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+
{
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120
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+
eigen_assert(m_isInitialized && "SVD is not initialized.");
|
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121
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+
return m_nonzeroSingularValues;
|
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122
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+
}
|
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123
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+
|
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124
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+
/** \returns the rank of the matrix of which \c *this is the SVD.
|
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125
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+
*
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126
|
+
* \note This method has to determine which singular values should be considered nonzero.
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127
|
+
* For that, it uses the threshold value that you can control by calling
|
|
128
|
+
* setThreshold(const RealScalar&).
|
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129
|
+
*/
|
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130
|
+
inline Index rank() const
|
|
131
|
+
{
|
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132
|
+
using std::abs;
|
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133
|
+
eigen_assert(m_isInitialized && "JacobiSVD is not initialized.");
|
|
134
|
+
if(m_singularValues.size()==0) return 0;
|
|
135
|
+
RealScalar premultiplied_threshold = numext::maxi<RealScalar>(m_singularValues.coeff(0) * threshold(), (std::numeric_limits<RealScalar>::min)());
|
|
136
|
+
Index i = m_nonzeroSingularValues-1;
|
|
137
|
+
while(i>=0 && m_singularValues.coeff(i) < premultiplied_threshold) --i;
|
|
138
|
+
return i+1;
|
|
139
|
+
}
|
|
140
|
+
|
|
141
|
+
/** Allows to prescribe a threshold to be used by certain methods, such as rank() and solve(),
|
|
142
|
+
* which need to determine when singular values are to be considered nonzero.
|
|
143
|
+
* This is not used for the SVD decomposition itself.
|
|
144
|
+
*
|
|
145
|
+
* When it needs to get the threshold value, Eigen calls threshold().
|
|
146
|
+
* The default is \c NumTraits<Scalar>::epsilon()
|
|
147
|
+
*
|
|
148
|
+
* \param threshold The new value to use as the threshold.
|
|
149
|
+
*
|
|
150
|
+
* A singular value will be considered nonzero if its value is strictly greater than
|
|
151
|
+
* \f$ \vert singular value \vert \leqslant threshold \times \vert max singular value \vert \f$.
|
|
152
|
+
*
|
|
153
|
+
* If you want to come back to the default behavior, call setThreshold(Default_t)
|
|
154
|
+
*/
|
|
155
|
+
Derived& setThreshold(const RealScalar& threshold)
|
|
156
|
+
{
|
|
157
|
+
m_usePrescribedThreshold = true;
|
|
158
|
+
m_prescribedThreshold = threshold;
|
|
159
|
+
return derived();
|
|
160
|
+
}
|
|
161
|
+
|
|
162
|
+
/** Allows to come back to the default behavior, letting Eigen use its default formula for
|
|
163
|
+
* determining the threshold.
|
|
164
|
+
*
|
|
165
|
+
* You should pass the special object Eigen::Default as parameter here.
|
|
166
|
+
* \code svd.setThreshold(Eigen::Default); \endcode
|
|
167
|
+
*
|
|
168
|
+
* See the documentation of setThreshold(const RealScalar&).
|
|
169
|
+
*/
|
|
170
|
+
Derived& setThreshold(Default_t)
|
|
171
|
+
{
|
|
172
|
+
m_usePrescribedThreshold = false;
|
|
173
|
+
return derived();
|
|
174
|
+
}
|
|
175
|
+
|
|
176
|
+
/** Returns the threshold that will be used by certain methods such as rank().
|
|
177
|
+
*
|
|
178
|
+
* See the documentation of setThreshold(const RealScalar&).
|
|
179
|
+
*/
|
|
180
|
+
RealScalar threshold() const
|
|
181
|
+
{
|
|
182
|
+
eigen_assert(m_isInitialized || m_usePrescribedThreshold);
|
|
183
|
+
// this temporary is needed to workaround a MSVC issue
|
|
184
|
+
Index diagSize = (std::max<Index>)(1,m_diagSize);
|
|
185
|
+
return m_usePrescribedThreshold ? m_prescribedThreshold
|
|
186
|
+
: diagSize*NumTraits<Scalar>::epsilon();
|
|
187
|
+
}
|
|
188
|
+
|
|
189
|
+
/** \returns true if \a U (full or thin) is asked for in this SVD decomposition */
|
|
190
|
+
inline bool computeU() const { return m_computeFullU || m_computeThinU; }
|
|
191
|
+
/** \returns true if \a V (full or thin) is asked for in this SVD decomposition */
|
|
192
|
+
inline bool computeV() const { return m_computeFullV || m_computeThinV; }
|
|
193
|
+
|
|
194
|
+
inline Index rows() const { return m_rows; }
|
|
195
|
+
inline Index cols() const { return m_cols; }
|
|
196
|
+
|
|
197
|
+
/** \returns a (least squares) solution of \f$ A x = b \f$ using the current SVD decomposition of A.
|
|
198
|
+
*
|
|
199
|
+
* \param b the right-hand-side of the equation to solve.
|
|
200
|
+
*
|
|
201
|
+
* \note Solving requires both U and V to be computed. Thin U and V are enough, there is no need for full U or V.
|
|
202
|
+
*
|
|
203
|
+
* \note SVD solving is implicitly least-squares. Thus, this method serves both purposes of exact solving and least-squares solving.
|
|
204
|
+
* In other words, the returned solution is guaranteed to minimize the Euclidean norm \f$ \Vert A x - b \Vert \f$.
|
|
205
|
+
*/
|
|
206
|
+
template<typename Rhs>
|
|
207
|
+
inline const Solve<Derived, Rhs>
|
|
208
|
+
solve(const MatrixBase<Rhs>& b) const
|
|
209
|
+
{
|
|
210
|
+
eigen_assert(m_isInitialized && "SVD is not initialized.");
|
|
211
|
+
eigen_assert(computeU() && computeV() && "SVD::solve() requires both unitaries U and V to be computed (thin unitaries suffice).");
|
|
212
|
+
return Solve<Derived, Rhs>(derived(), b.derived());
|
|
213
|
+
}
|
|
214
|
+
|
|
215
|
+
#ifndef EIGEN_PARSED_BY_DOXYGEN
|
|
216
|
+
template<typename RhsType, typename DstType>
|
|
217
|
+
EIGEN_DEVICE_FUNC
|
|
218
|
+
void _solve_impl(const RhsType &rhs, DstType &dst) const;
|
|
219
|
+
#endif
|
|
220
|
+
|
|
221
|
+
protected:
|
|
222
|
+
|
|
223
|
+
static void check_template_parameters()
|
|
224
|
+
{
|
|
225
|
+
EIGEN_STATIC_ASSERT_NON_INTEGER(Scalar);
|
|
226
|
+
}
|
|
227
|
+
|
|
228
|
+
// return true if already allocated
|
|
229
|
+
bool allocate(Index rows, Index cols, unsigned int computationOptions) ;
|
|
230
|
+
|
|
231
|
+
MatrixUType m_matrixU;
|
|
232
|
+
MatrixVType m_matrixV;
|
|
233
|
+
SingularValuesType m_singularValues;
|
|
234
|
+
bool m_isInitialized, m_isAllocated, m_usePrescribedThreshold;
|
|
235
|
+
bool m_computeFullU, m_computeThinU;
|
|
236
|
+
bool m_computeFullV, m_computeThinV;
|
|
237
|
+
unsigned int m_computationOptions;
|
|
238
|
+
Index m_nonzeroSingularValues, m_rows, m_cols, m_diagSize;
|
|
239
|
+
RealScalar m_prescribedThreshold;
|
|
240
|
+
|
|
241
|
+
/** \brief Default Constructor.
|
|
242
|
+
*
|
|
243
|
+
* Default constructor of SVDBase
|
|
244
|
+
*/
|
|
245
|
+
SVDBase()
|
|
246
|
+
: m_isInitialized(false),
|
|
247
|
+
m_isAllocated(false),
|
|
248
|
+
m_usePrescribedThreshold(false),
|
|
249
|
+
m_computationOptions(0),
|
|
250
|
+
m_rows(-1), m_cols(-1), m_diagSize(0)
|
|
251
|
+
{
|
|
252
|
+
check_template_parameters();
|
|
253
|
+
}
|
|
254
|
+
|
|
255
|
+
|
|
256
|
+
};
|
|
257
|
+
|
|
258
|
+
#ifndef EIGEN_PARSED_BY_DOXYGEN
|
|
259
|
+
template<typename Derived>
|
|
260
|
+
template<typename RhsType, typename DstType>
|
|
261
|
+
void SVDBase<Derived>::_solve_impl(const RhsType &rhs, DstType &dst) const
|
|
262
|
+
{
|
|
263
|
+
eigen_assert(rhs.rows() == rows());
|
|
264
|
+
|
|
265
|
+
// A = U S V^*
|
|
266
|
+
// So A^{-1} = V S^{-1} U^*
|
|
267
|
+
|
|
268
|
+
Matrix<Scalar, Dynamic, RhsType::ColsAtCompileTime, 0, MatrixType::MaxRowsAtCompileTime, RhsType::MaxColsAtCompileTime> tmp;
|
|
269
|
+
Index l_rank = rank();
|
|
270
|
+
tmp.noalias() = m_matrixU.leftCols(l_rank).adjoint() * rhs;
|
|
271
|
+
tmp = m_singularValues.head(l_rank).asDiagonal().inverse() * tmp;
|
|
272
|
+
dst = m_matrixV.leftCols(l_rank) * tmp;
|
|
273
|
+
}
|
|
274
|
+
#endif
|
|
275
|
+
|
|
276
|
+
template<typename MatrixType>
|
|
277
|
+
bool SVDBase<MatrixType>::allocate(Index rows, Index cols, unsigned int computationOptions)
|
|
278
|
+
{
|
|
279
|
+
eigen_assert(rows >= 0 && cols >= 0);
|
|
280
|
+
|
|
281
|
+
if (m_isAllocated &&
|
|
282
|
+
rows == m_rows &&
|
|
283
|
+
cols == m_cols &&
|
|
284
|
+
computationOptions == m_computationOptions)
|
|
285
|
+
{
|
|
286
|
+
return true;
|
|
287
|
+
}
|
|
288
|
+
|
|
289
|
+
m_rows = rows;
|
|
290
|
+
m_cols = cols;
|
|
291
|
+
m_isInitialized = false;
|
|
292
|
+
m_isAllocated = true;
|
|
293
|
+
m_computationOptions = computationOptions;
|
|
294
|
+
m_computeFullU = (computationOptions & ComputeFullU) != 0;
|
|
295
|
+
m_computeThinU = (computationOptions & ComputeThinU) != 0;
|
|
296
|
+
m_computeFullV = (computationOptions & ComputeFullV) != 0;
|
|
297
|
+
m_computeThinV = (computationOptions & ComputeThinV) != 0;
|
|
298
|
+
eigen_assert(!(m_computeFullU && m_computeThinU) && "SVDBase: you can't ask for both full and thin U");
|
|
299
|
+
eigen_assert(!(m_computeFullV && m_computeThinV) && "SVDBase: you can't ask for both full and thin V");
|
|
300
|
+
eigen_assert(EIGEN_IMPLIES(m_computeThinU || m_computeThinV, MatrixType::ColsAtCompileTime==Dynamic) &&
|
|
301
|
+
"SVDBase: thin U and V are only available when your matrix has a dynamic number of columns.");
|
|
302
|
+
|
|
303
|
+
m_diagSize = (std::min)(m_rows, m_cols);
|
|
304
|
+
m_singularValues.resize(m_diagSize);
|
|
305
|
+
if(RowsAtCompileTime==Dynamic)
|
|
306
|
+
m_matrixU.resize(m_rows, m_computeFullU ? m_rows : m_computeThinU ? m_diagSize : 0);
|
|
307
|
+
if(ColsAtCompileTime==Dynamic)
|
|
308
|
+
m_matrixV.resize(m_cols, m_computeFullV ? m_cols : m_computeThinV ? m_diagSize : 0);
|
|
309
|
+
|
|
310
|
+
return false;
|
|
311
|
+
}
|
|
312
|
+
|
|
313
|
+
}// end namespace
|
|
314
|
+
|
|
315
|
+
#endif // EIGEN_SVDBASE_H
|
|
@@ -0,0 +1,414 @@
|
|
|
1
|
+
// This file is part of Eigen, a lightweight C++ template library
|
|
2
|
+
// for linear algebra.
|
|
3
|
+
//
|
|
4
|
+
// Copyright (C) 2010 Benoit Jacob <jacob.benoit.1@gmail.com>
|
|
5
|
+
// Copyright (C) 2013-2014 Gael Guennebaud <gael.guennebaud@inria.fr>
|
|
6
|
+
//
|
|
7
|
+
// This Source Code Form is subject to the terms of the Mozilla
|
|
8
|
+
// Public License v. 2.0. If a copy of the MPL was not distributed
|
|
9
|
+
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
|
|
10
|
+
|
|
11
|
+
#ifndef EIGEN_BIDIAGONALIZATION_H
|
|
12
|
+
#define EIGEN_BIDIAGONALIZATION_H
|
|
13
|
+
|
|
14
|
+
namespace Eigen {
|
|
15
|
+
|
|
16
|
+
namespace internal {
|
|
17
|
+
// UpperBidiagonalization will probably be replaced by a Bidiagonalization class, don't want to make it stable API.
|
|
18
|
+
// At the same time, it's useful to keep for now as it's about the only thing that is testing the BandMatrix class.
|
|
19
|
+
|
|
20
|
+
template<typename _MatrixType> class UpperBidiagonalization
|
|
21
|
+
{
|
|
22
|
+
public:
|
|
23
|
+
|
|
24
|
+
typedef _MatrixType MatrixType;
|
|
25
|
+
enum {
|
|
26
|
+
RowsAtCompileTime = MatrixType::RowsAtCompileTime,
|
|
27
|
+
ColsAtCompileTime = MatrixType::ColsAtCompileTime,
|
|
28
|
+
ColsAtCompileTimeMinusOne = internal::decrement_size<ColsAtCompileTime>::ret
|
|
29
|
+
};
|
|
30
|
+
typedef typename MatrixType::Scalar Scalar;
|
|
31
|
+
typedef typename MatrixType::RealScalar RealScalar;
|
|
32
|
+
typedef Eigen::Index Index; ///< \deprecated since Eigen 3.3
|
|
33
|
+
typedef Matrix<Scalar, 1, ColsAtCompileTime> RowVectorType;
|
|
34
|
+
typedef Matrix<Scalar, RowsAtCompileTime, 1> ColVectorType;
|
|
35
|
+
typedef BandMatrix<RealScalar, ColsAtCompileTime, ColsAtCompileTime, 1, 0, RowMajor> BidiagonalType;
|
|
36
|
+
typedef Matrix<Scalar, ColsAtCompileTime, 1> DiagVectorType;
|
|
37
|
+
typedef Matrix<Scalar, ColsAtCompileTimeMinusOne, 1> SuperDiagVectorType;
|
|
38
|
+
typedef HouseholderSequence<
|
|
39
|
+
const MatrixType,
|
|
40
|
+
const typename internal::remove_all<typename Diagonal<const MatrixType,0>::ConjugateReturnType>::type
|
|
41
|
+
> HouseholderUSequenceType;
|
|
42
|
+
typedef HouseholderSequence<
|
|
43
|
+
const typename internal::remove_all<typename MatrixType::ConjugateReturnType>::type,
|
|
44
|
+
Diagonal<const MatrixType,1>,
|
|
45
|
+
OnTheRight
|
|
46
|
+
> HouseholderVSequenceType;
|
|
47
|
+
|
|
48
|
+
/**
|
|
49
|
+
* \brief Default Constructor.
|
|
50
|
+
*
|
|
51
|
+
* The default constructor is useful in cases in which the user intends to
|
|
52
|
+
* perform decompositions via Bidiagonalization::compute(const MatrixType&).
|
|
53
|
+
*/
|
|
54
|
+
UpperBidiagonalization() : m_householder(), m_bidiagonal(), m_isInitialized(false) {}
|
|
55
|
+
|
|
56
|
+
explicit UpperBidiagonalization(const MatrixType& matrix)
|
|
57
|
+
: m_householder(matrix.rows(), matrix.cols()),
|
|
58
|
+
m_bidiagonal(matrix.cols(), matrix.cols()),
|
|
59
|
+
m_isInitialized(false)
|
|
60
|
+
{
|
|
61
|
+
compute(matrix);
|
|
62
|
+
}
|
|
63
|
+
|
|
64
|
+
UpperBidiagonalization& compute(const MatrixType& matrix);
|
|
65
|
+
UpperBidiagonalization& computeUnblocked(const MatrixType& matrix);
|
|
66
|
+
|
|
67
|
+
const MatrixType& householder() const { return m_householder; }
|
|
68
|
+
const BidiagonalType& bidiagonal() const { return m_bidiagonal; }
|
|
69
|
+
|
|
70
|
+
const HouseholderUSequenceType householderU() const
|
|
71
|
+
{
|
|
72
|
+
eigen_assert(m_isInitialized && "UpperBidiagonalization is not initialized.");
|
|
73
|
+
return HouseholderUSequenceType(m_householder, m_householder.diagonal().conjugate());
|
|
74
|
+
}
|
|
75
|
+
|
|
76
|
+
const HouseholderVSequenceType householderV() // const here gives nasty errors and i'm lazy
|
|
77
|
+
{
|
|
78
|
+
eigen_assert(m_isInitialized && "UpperBidiagonalization is not initialized.");
|
|
79
|
+
return HouseholderVSequenceType(m_householder.conjugate(), m_householder.const_derived().template diagonal<1>())
|
|
80
|
+
.setLength(m_householder.cols()-1)
|
|
81
|
+
.setShift(1);
|
|
82
|
+
}
|
|
83
|
+
|
|
84
|
+
protected:
|
|
85
|
+
MatrixType m_householder;
|
|
86
|
+
BidiagonalType m_bidiagonal;
|
|
87
|
+
bool m_isInitialized;
|
|
88
|
+
};
|
|
89
|
+
|
|
90
|
+
// Standard upper bidiagonalization without fancy optimizations
|
|
91
|
+
// This version should be faster for small matrix size
|
|
92
|
+
template<typename MatrixType>
|
|
93
|
+
void upperbidiagonalization_inplace_unblocked(MatrixType& mat,
|
|
94
|
+
typename MatrixType::RealScalar *diagonal,
|
|
95
|
+
typename MatrixType::RealScalar *upper_diagonal,
|
|
96
|
+
typename MatrixType::Scalar* tempData = 0)
|
|
97
|
+
{
|
|
98
|
+
typedef typename MatrixType::Scalar Scalar;
|
|
99
|
+
|
|
100
|
+
Index rows = mat.rows();
|
|
101
|
+
Index cols = mat.cols();
|
|
102
|
+
|
|
103
|
+
typedef Matrix<Scalar,Dynamic,1,ColMajor,MatrixType::MaxRowsAtCompileTime,1> TempType;
|
|
104
|
+
TempType tempVector;
|
|
105
|
+
if(tempData==0)
|
|
106
|
+
{
|
|
107
|
+
tempVector.resize(rows);
|
|
108
|
+
tempData = tempVector.data();
|
|
109
|
+
}
|
|
110
|
+
|
|
111
|
+
for (Index k = 0; /* breaks at k==cols-1 below */ ; ++k)
|
|
112
|
+
{
|
|
113
|
+
Index remainingRows = rows - k;
|
|
114
|
+
Index remainingCols = cols - k - 1;
|
|
115
|
+
|
|
116
|
+
// construct left householder transform in-place in A
|
|
117
|
+
mat.col(k).tail(remainingRows)
|
|
118
|
+
.makeHouseholderInPlace(mat.coeffRef(k,k), diagonal[k]);
|
|
119
|
+
// apply householder transform to remaining part of A on the left
|
|
120
|
+
mat.bottomRightCorner(remainingRows, remainingCols)
|
|
121
|
+
.applyHouseholderOnTheLeft(mat.col(k).tail(remainingRows-1), mat.coeff(k,k), tempData);
|
|
122
|
+
|
|
123
|
+
if(k == cols-1) break;
|
|
124
|
+
|
|
125
|
+
// construct right householder transform in-place in mat
|
|
126
|
+
mat.row(k).tail(remainingCols)
|
|
127
|
+
.makeHouseholderInPlace(mat.coeffRef(k,k+1), upper_diagonal[k]);
|
|
128
|
+
// apply householder transform to remaining part of mat on the left
|
|
129
|
+
mat.bottomRightCorner(remainingRows-1, remainingCols)
|
|
130
|
+
.applyHouseholderOnTheRight(mat.row(k).tail(remainingCols-1).transpose(), mat.coeff(k,k+1), tempData);
|
|
131
|
+
}
|
|
132
|
+
}
|
|
133
|
+
|
|
134
|
+
/** \internal
|
|
135
|
+
* Helper routine for the block reduction to upper bidiagonal form.
|
|
136
|
+
*
|
|
137
|
+
* Let's partition the matrix A:
|
|
138
|
+
*
|
|
139
|
+
* | A00 A01 |
|
|
140
|
+
* A = | |
|
|
141
|
+
* | A10 A11 |
|
|
142
|
+
*
|
|
143
|
+
* This function reduces to bidiagonal form the left \c rows x \a blockSize vertical panel [A00/A10]
|
|
144
|
+
* and the \a blockSize x \c cols horizontal panel [A00 A01] of the matrix \a A. The bottom-right block A11
|
|
145
|
+
* is updated using matrix-matrix products:
|
|
146
|
+
* A22 -= V * Y^T - X * U^T
|
|
147
|
+
* where V and U contains the left and right Householder vectors. U and V are stored in A10, and A01
|
|
148
|
+
* respectively, and the update matrices X and Y are computed during the reduction.
|
|
149
|
+
*
|
|
150
|
+
*/
|
|
151
|
+
template<typename MatrixType>
|
|
152
|
+
void upperbidiagonalization_blocked_helper(MatrixType& A,
|
|
153
|
+
typename MatrixType::RealScalar *diagonal,
|
|
154
|
+
typename MatrixType::RealScalar *upper_diagonal,
|
|
155
|
+
Index bs,
|
|
156
|
+
Ref<Matrix<typename MatrixType::Scalar, Dynamic, Dynamic,
|
|
157
|
+
traits<MatrixType>::Flags & RowMajorBit> > X,
|
|
158
|
+
Ref<Matrix<typename MatrixType::Scalar, Dynamic, Dynamic,
|
|
159
|
+
traits<MatrixType>::Flags & RowMajorBit> > Y)
|
|
160
|
+
{
|
|
161
|
+
typedef typename MatrixType::Scalar Scalar;
|
|
162
|
+
typedef typename MatrixType::RealScalar RealScalar;
|
|
163
|
+
typedef typename NumTraits<RealScalar>::Literal Literal;
|
|
164
|
+
enum { StorageOrder = traits<MatrixType>::Flags & RowMajorBit };
|
|
165
|
+
typedef InnerStride<int(StorageOrder) == int(ColMajor) ? 1 : Dynamic> ColInnerStride;
|
|
166
|
+
typedef InnerStride<int(StorageOrder) == int(ColMajor) ? Dynamic : 1> RowInnerStride;
|
|
167
|
+
typedef Ref<Matrix<Scalar, Dynamic, 1>, 0, ColInnerStride> SubColumnType;
|
|
168
|
+
typedef Ref<Matrix<Scalar, 1, Dynamic>, 0, RowInnerStride> SubRowType;
|
|
169
|
+
typedef Ref<Matrix<Scalar, Dynamic, Dynamic, StorageOrder > > SubMatType;
|
|
170
|
+
|
|
171
|
+
Index brows = A.rows();
|
|
172
|
+
Index bcols = A.cols();
|
|
173
|
+
|
|
174
|
+
Scalar tau_u, tau_u_prev(0), tau_v;
|
|
175
|
+
|
|
176
|
+
for(Index k = 0; k < bs; ++k)
|
|
177
|
+
{
|
|
178
|
+
Index remainingRows = brows - k;
|
|
179
|
+
Index remainingCols = bcols - k - 1;
|
|
180
|
+
|
|
181
|
+
SubMatType X_k1( X.block(k,0, remainingRows,k) );
|
|
182
|
+
SubMatType V_k1( A.block(k,0, remainingRows,k) );
|
|
183
|
+
|
|
184
|
+
// 1 - update the k-th column of A
|
|
185
|
+
SubColumnType v_k = A.col(k).tail(remainingRows);
|
|
186
|
+
v_k -= V_k1 * Y.row(k).head(k).adjoint();
|
|
187
|
+
if(k) v_k -= X_k1 * A.col(k).head(k);
|
|
188
|
+
|
|
189
|
+
// 2 - construct left Householder transform in-place
|
|
190
|
+
v_k.makeHouseholderInPlace(tau_v, diagonal[k]);
|
|
191
|
+
|
|
192
|
+
if(k+1<bcols)
|
|
193
|
+
{
|
|
194
|
+
SubMatType Y_k ( Y.block(k+1,0, remainingCols, k+1) );
|
|
195
|
+
SubMatType U_k1 ( A.block(0,k+1, k,remainingCols) );
|
|
196
|
+
|
|
197
|
+
// this eases the application of Householder transforAions
|
|
198
|
+
// A(k,k) will store tau_v later
|
|
199
|
+
A(k,k) = Scalar(1);
|
|
200
|
+
|
|
201
|
+
// 3 - Compute y_k^T = tau_v * ( A^T*v_k - Y_k-1*V_k-1^T*v_k - U_k-1*X_k-1^T*v_k )
|
|
202
|
+
{
|
|
203
|
+
SubColumnType y_k( Y.col(k).tail(remainingCols) );
|
|
204
|
+
|
|
205
|
+
// let's use the begining of column k of Y as a temporary vector
|
|
206
|
+
SubColumnType tmp( Y.col(k).head(k) );
|
|
207
|
+
y_k.noalias() = A.block(k,k+1, remainingRows,remainingCols).adjoint() * v_k; // bottleneck
|
|
208
|
+
tmp.noalias() = V_k1.adjoint() * v_k;
|
|
209
|
+
y_k.noalias() -= Y_k.leftCols(k) * tmp;
|
|
210
|
+
tmp.noalias() = X_k1.adjoint() * v_k;
|
|
211
|
+
y_k.noalias() -= U_k1.adjoint() * tmp;
|
|
212
|
+
y_k *= numext::conj(tau_v);
|
|
213
|
+
}
|
|
214
|
+
|
|
215
|
+
// 4 - update k-th row of A (it will become u_k)
|
|
216
|
+
SubRowType u_k( A.row(k).tail(remainingCols) );
|
|
217
|
+
u_k = u_k.conjugate();
|
|
218
|
+
{
|
|
219
|
+
u_k -= Y_k * A.row(k).head(k+1).adjoint();
|
|
220
|
+
if(k) u_k -= U_k1.adjoint() * X.row(k).head(k).adjoint();
|
|
221
|
+
}
|
|
222
|
+
|
|
223
|
+
// 5 - construct right Householder transform in-place
|
|
224
|
+
u_k.makeHouseholderInPlace(tau_u, upper_diagonal[k]);
|
|
225
|
+
|
|
226
|
+
// this eases the application of Householder transformations
|
|
227
|
+
// A(k,k+1) will store tau_u later
|
|
228
|
+
A(k,k+1) = Scalar(1);
|
|
229
|
+
|
|
230
|
+
// 6 - Compute x_k = tau_u * ( A*u_k - X_k-1*U_k-1^T*u_k - V_k*Y_k^T*u_k )
|
|
231
|
+
{
|
|
232
|
+
SubColumnType x_k ( X.col(k).tail(remainingRows-1) );
|
|
233
|
+
|
|
234
|
+
// let's use the begining of column k of X as a temporary vectors
|
|
235
|
+
// note that tmp0 and tmp1 overlaps
|
|
236
|
+
SubColumnType tmp0 ( X.col(k).head(k) ),
|
|
237
|
+
tmp1 ( X.col(k).head(k+1) );
|
|
238
|
+
|
|
239
|
+
x_k.noalias() = A.block(k+1,k+1, remainingRows-1,remainingCols) * u_k.transpose(); // bottleneck
|
|
240
|
+
tmp0.noalias() = U_k1 * u_k.transpose();
|
|
241
|
+
x_k.noalias() -= X_k1.bottomRows(remainingRows-1) * tmp0;
|
|
242
|
+
tmp1.noalias() = Y_k.adjoint() * u_k.transpose();
|
|
243
|
+
x_k.noalias() -= A.block(k+1,0, remainingRows-1,k+1) * tmp1;
|
|
244
|
+
x_k *= numext::conj(tau_u);
|
|
245
|
+
tau_u = numext::conj(tau_u);
|
|
246
|
+
u_k = u_k.conjugate();
|
|
247
|
+
}
|
|
248
|
+
|
|
249
|
+
if(k>0) A.coeffRef(k-1,k) = tau_u_prev;
|
|
250
|
+
tau_u_prev = tau_u;
|
|
251
|
+
}
|
|
252
|
+
else
|
|
253
|
+
A.coeffRef(k-1,k) = tau_u_prev;
|
|
254
|
+
|
|
255
|
+
A.coeffRef(k,k) = tau_v;
|
|
256
|
+
}
|
|
257
|
+
|
|
258
|
+
if(bs<bcols)
|
|
259
|
+
A.coeffRef(bs-1,bs) = tau_u_prev;
|
|
260
|
+
|
|
261
|
+
// update A22
|
|
262
|
+
if(bcols>bs && brows>bs)
|
|
263
|
+
{
|
|
264
|
+
SubMatType A11( A.bottomRightCorner(brows-bs,bcols-bs) );
|
|
265
|
+
SubMatType A10( A.block(bs,0, brows-bs,bs) );
|
|
266
|
+
SubMatType A01( A.block(0,bs, bs,bcols-bs) );
|
|
267
|
+
Scalar tmp = A01(bs-1,0);
|
|
268
|
+
A01(bs-1,0) = Literal(1);
|
|
269
|
+
A11.noalias() -= A10 * Y.topLeftCorner(bcols,bs).bottomRows(bcols-bs).adjoint();
|
|
270
|
+
A11.noalias() -= X.topLeftCorner(brows,bs).bottomRows(brows-bs) * A01;
|
|
271
|
+
A01(bs-1,0) = tmp;
|
|
272
|
+
}
|
|
273
|
+
}
|
|
274
|
+
|
|
275
|
+
/** \internal
|
|
276
|
+
*
|
|
277
|
+
* Implementation of a block-bidiagonal reduction.
|
|
278
|
+
* It is based on the following paper:
|
|
279
|
+
* The Design of a Parallel Dense Linear Algebra Software Library: Reduction to Hessenberg, Tridiagonal, and Bidiagonal Form.
|
|
280
|
+
* by Jaeyoung Choi, Jack J. Dongarra, David W. Walker. (1995)
|
|
281
|
+
* section 3.3
|
|
282
|
+
*/
|
|
283
|
+
template<typename MatrixType, typename BidiagType>
|
|
284
|
+
void upperbidiagonalization_inplace_blocked(MatrixType& A, BidiagType& bidiagonal,
|
|
285
|
+
Index maxBlockSize=32,
|
|
286
|
+
typename MatrixType::Scalar* /*tempData*/ = 0)
|
|
287
|
+
{
|
|
288
|
+
typedef typename MatrixType::Scalar Scalar;
|
|
289
|
+
typedef Block<MatrixType,Dynamic,Dynamic> BlockType;
|
|
290
|
+
|
|
291
|
+
Index rows = A.rows();
|
|
292
|
+
Index cols = A.cols();
|
|
293
|
+
Index size = (std::min)(rows, cols);
|
|
294
|
+
|
|
295
|
+
// X and Y are work space
|
|
296
|
+
enum { StorageOrder = traits<MatrixType>::Flags & RowMajorBit };
|
|
297
|
+
Matrix<Scalar,
|
|
298
|
+
MatrixType::RowsAtCompileTime,
|
|
299
|
+
Dynamic,
|
|
300
|
+
StorageOrder,
|
|
301
|
+
MatrixType::MaxRowsAtCompileTime> X(rows,maxBlockSize);
|
|
302
|
+
Matrix<Scalar,
|
|
303
|
+
MatrixType::ColsAtCompileTime,
|
|
304
|
+
Dynamic,
|
|
305
|
+
StorageOrder,
|
|
306
|
+
MatrixType::MaxColsAtCompileTime> Y(cols,maxBlockSize);
|
|
307
|
+
Index blockSize = (std::min)(maxBlockSize,size);
|
|
308
|
+
|
|
309
|
+
Index k = 0;
|
|
310
|
+
for(k = 0; k < size; k += blockSize)
|
|
311
|
+
{
|
|
312
|
+
Index bs = (std::min)(size-k,blockSize); // actual size of the block
|
|
313
|
+
Index brows = rows - k; // rows of the block
|
|
314
|
+
Index bcols = cols - k; // columns of the block
|
|
315
|
+
|
|
316
|
+
// partition the matrix A:
|
|
317
|
+
//
|
|
318
|
+
// | A00 A01 A02 |
|
|
319
|
+
// | |
|
|
320
|
+
// A = | A10 A11 A12 |
|
|
321
|
+
// | |
|
|
322
|
+
// | A20 A21 A22 |
|
|
323
|
+
//
|
|
324
|
+
// where A11 is a bs x bs diagonal block,
|
|
325
|
+
// and let:
|
|
326
|
+
// | A11 A12 |
|
|
327
|
+
// B = | |
|
|
328
|
+
// | A21 A22 |
|
|
329
|
+
|
|
330
|
+
BlockType B = A.block(k,k,brows,bcols);
|
|
331
|
+
|
|
332
|
+
// This stage performs the bidiagonalization of A11, A21, A12, and updating of A22.
|
|
333
|
+
// Finally, the algorithm continue on the updated A22.
|
|
334
|
+
//
|
|
335
|
+
// However, if B is too small, or A22 empty, then let's use an unblocked strategy
|
|
336
|
+
if(k+bs==cols || bcols<48) // somewhat arbitrary threshold
|
|
337
|
+
{
|
|
338
|
+
upperbidiagonalization_inplace_unblocked(B,
|
|
339
|
+
&(bidiagonal.template diagonal<0>().coeffRef(k)),
|
|
340
|
+
&(bidiagonal.template diagonal<1>().coeffRef(k)),
|
|
341
|
+
X.data()
|
|
342
|
+
);
|
|
343
|
+
break; // We're done
|
|
344
|
+
}
|
|
345
|
+
else
|
|
346
|
+
{
|
|
347
|
+
upperbidiagonalization_blocked_helper<BlockType>( B,
|
|
348
|
+
&(bidiagonal.template diagonal<0>().coeffRef(k)),
|
|
349
|
+
&(bidiagonal.template diagonal<1>().coeffRef(k)),
|
|
350
|
+
bs,
|
|
351
|
+
X.topLeftCorner(brows,bs),
|
|
352
|
+
Y.topLeftCorner(bcols,bs)
|
|
353
|
+
);
|
|
354
|
+
}
|
|
355
|
+
}
|
|
356
|
+
}
|
|
357
|
+
|
|
358
|
+
template<typename _MatrixType>
|
|
359
|
+
UpperBidiagonalization<_MatrixType>& UpperBidiagonalization<_MatrixType>::computeUnblocked(const _MatrixType& matrix)
|
|
360
|
+
{
|
|
361
|
+
Index rows = matrix.rows();
|
|
362
|
+
Index cols = matrix.cols();
|
|
363
|
+
EIGEN_ONLY_USED_FOR_DEBUG(cols);
|
|
364
|
+
|
|
365
|
+
eigen_assert(rows >= cols && "UpperBidiagonalization is only for Arices satisfying rows>=cols.");
|
|
366
|
+
|
|
367
|
+
m_householder = matrix;
|
|
368
|
+
|
|
369
|
+
ColVectorType temp(rows);
|
|
370
|
+
|
|
371
|
+
upperbidiagonalization_inplace_unblocked(m_householder,
|
|
372
|
+
&(m_bidiagonal.template diagonal<0>().coeffRef(0)),
|
|
373
|
+
&(m_bidiagonal.template diagonal<1>().coeffRef(0)),
|
|
374
|
+
temp.data());
|
|
375
|
+
|
|
376
|
+
m_isInitialized = true;
|
|
377
|
+
return *this;
|
|
378
|
+
}
|
|
379
|
+
|
|
380
|
+
template<typename _MatrixType>
|
|
381
|
+
UpperBidiagonalization<_MatrixType>& UpperBidiagonalization<_MatrixType>::compute(const _MatrixType& matrix)
|
|
382
|
+
{
|
|
383
|
+
Index rows = matrix.rows();
|
|
384
|
+
Index cols = matrix.cols();
|
|
385
|
+
EIGEN_ONLY_USED_FOR_DEBUG(rows);
|
|
386
|
+
EIGEN_ONLY_USED_FOR_DEBUG(cols);
|
|
387
|
+
|
|
388
|
+
eigen_assert(rows >= cols && "UpperBidiagonalization is only for Arices satisfying rows>=cols.");
|
|
389
|
+
|
|
390
|
+
m_householder = matrix;
|
|
391
|
+
upperbidiagonalization_inplace_blocked(m_householder, m_bidiagonal);
|
|
392
|
+
|
|
393
|
+
m_isInitialized = true;
|
|
394
|
+
return *this;
|
|
395
|
+
}
|
|
396
|
+
|
|
397
|
+
#if 0
|
|
398
|
+
/** \return the Householder QR decomposition of \c *this.
|
|
399
|
+
*
|
|
400
|
+
* \sa class Bidiagonalization
|
|
401
|
+
*/
|
|
402
|
+
template<typename Derived>
|
|
403
|
+
const UpperBidiagonalization<typename MatrixBase<Derived>::PlainObject>
|
|
404
|
+
MatrixBase<Derived>::bidiagonalization() const
|
|
405
|
+
{
|
|
406
|
+
return UpperBidiagonalization<PlainObject>(eval());
|
|
407
|
+
}
|
|
408
|
+
#endif
|
|
409
|
+
|
|
410
|
+
} // end namespace internal
|
|
411
|
+
|
|
412
|
+
} // end namespace Eigen
|
|
413
|
+
|
|
414
|
+
#endif // EIGEN_BIDIAGONALIZATION_H
|