tomoto 0.1.0

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Files changed (420) hide show
  1. checksums.yaml +7 -0
  2. data/CHANGELOG.md +3 -0
  3. data/LICENSE.txt +22 -0
  4. data/README.md +123 -0
  5. data/ext/tomoto/ext.cpp +245 -0
  6. data/ext/tomoto/extconf.rb +28 -0
  7. data/lib/tomoto.rb +12 -0
  8. data/lib/tomoto/ct.rb +11 -0
  9. data/lib/tomoto/hdp.rb +11 -0
  10. data/lib/tomoto/lda.rb +67 -0
  11. data/lib/tomoto/version.rb +3 -0
  12. data/vendor/EigenRand/EigenRand/Core.h +1139 -0
  13. data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
  14. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
  15. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
  16. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
  17. data/vendor/EigenRand/EigenRand/EigenRand +19 -0
  18. data/vendor/EigenRand/EigenRand/Macro.h +24 -0
  19. data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
  20. data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
  21. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
  22. data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
  23. data/vendor/EigenRand/EigenRand/doc.h +220 -0
  24. data/vendor/EigenRand/LICENSE +21 -0
  25. data/vendor/EigenRand/README.md +288 -0
  26. data/vendor/eigen/COPYING.BSD +26 -0
  27. data/vendor/eigen/COPYING.GPL +674 -0
  28. data/vendor/eigen/COPYING.LGPL +502 -0
  29. data/vendor/eigen/COPYING.MINPACK +52 -0
  30. data/vendor/eigen/COPYING.MPL2 +373 -0
  31. data/vendor/eigen/COPYING.README +18 -0
  32. data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
  33. data/vendor/eigen/Eigen/Cholesky +46 -0
  34. data/vendor/eigen/Eigen/CholmodSupport +48 -0
  35. data/vendor/eigen/Eigen/Core +537 -0
  36. data/vendor/eigen/Eigen/Dense +7 -0
  37. data/vendor/eigen/Eigen/Eigen +2 -0
  38. data/vendor/eigen/Eigen/Eigenvalues +61 -0
  39. data/vendor/eigen/Eigen/Geometry +62 -0
  40. data/vendor/eigen/Eigen/Householder +30 -0
  41. data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
  42. data/vendor/eigen/Eigen/Jacobi +33 -0
  43. data/vendor/eigen/Eigen/LU +50 -0
  44. data/vendor/eigen/Eigen/MetisSupport +35 -0
  45. data/vendor/eigen/Eigen/OrderingMethods +73 -0
  46. data/vendor/eigen/Eigen/PaStiXSupport +48 -0
  47. data/vendor/eigen/Eigen/PardisoSupport +35 -0
  48. data/vendor/eigen/Eigen/QR +51 -0
  49. data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
  50. data/vendor/eigen/Eigen/SPQRSupport +34 -0
  51. data/vendor/eigen/Eigen/SVD +51 -0
  52. data/vendor/eigen/Eigen/Sparse +36 -0
  53. data/vendor/eigen/Eigen/SparseCholesky +45 -0
  54. data/vendor/eigen/Eigen/SparseCore +69 -0
  55. data/vendor/eigen/Eigen/SparseLU +46 -0
  56. data/vendor/eigen/Eigen/SparseQR +37 -0
  57. data/vendor/eigen/Eigen/StdDeque +27 -0
  58. data/vendor/eigen/Eigen/StdList +26 -0
  59. data/vendor/eigen/Eigen/StdVector +27 -0
  60. data/vendor/eigen/Eigen/SuperLUSupport +64 -0
  61. data/vendor/eigen/Eigen/UmfPackSupport +40 -0
  62. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
  63. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
  64. data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  65. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
  66. data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
  67. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
  68. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
  69. data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
  70. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
  71. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
  72. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
  73. data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
  74. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
  75. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
  76. data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
  77. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
  78. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
  79. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
  80. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
  81. data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  82. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
  84. data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
  85. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
  86. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
  87. data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
  88. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
  89. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
  90. data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
  91. data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
  92. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  93. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
  94. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
  95. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
  96. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
  97. data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
  98. data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
  99. data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
  100. data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
  101. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
  102. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
  103. data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
  104. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
  105. data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
  106. data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
  107. data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
  108. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
  109. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
  110. data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
  111. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
  112. data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
  113. data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
  114. data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
  115. data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
  116. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
  117. data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
  118. data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
  119. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
  120. data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  121. data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
  122. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
  123. data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
  124. data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
  125. data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
  126. data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
  127. data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
  128. data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
  129. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
  130. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
  131. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
  132. data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
  133. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
  134. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
  135. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
  136. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
  137. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
  138. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
  139. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
  140. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
  141. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
  142. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
  143. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
  145. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
  146. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
  148. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
  149. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
  153. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
  154. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
  156. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
  160. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
  161. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
  162. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
  163. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
  164. data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  165. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
  166. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
  167. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
  168. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
  169. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  170. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
  171. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
  172. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  173. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
  174. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
  175. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
  176. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
  177. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  178. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  179. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  180. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
  181. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
  182. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  183. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  184. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
  185. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
  186. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
  187. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
  188. data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
  189. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
  190. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  191. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
  192. data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
  193. data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
  194. data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
  195. data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
  196. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
  197. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
  198. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
  199. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  200. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
  201. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  202. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  203. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  204. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  205. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  206. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  207. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
  208. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
  209. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  210. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
  211. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  212. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
  213. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
  214. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
  215. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
  216. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
  217. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
  218. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
  219. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  220. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
  221. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
  222. data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
  223. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
  224. data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
  225. data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
  226. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
  227. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
  228. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
  229. data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
  230. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
  231. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  232. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
  233. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
  234. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
  235. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
  236. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
  237. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
  238. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
  239. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
  240. data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
  241. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
  242. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
  243. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
  244. data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  245. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
  246. data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  247. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
  248. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
  249. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
  250. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  251. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
  252. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
  253. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  254. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
  255. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
  256. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
  257. data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  258. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
  259. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
  260. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
  261. data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  262. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
  263. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  264. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
  265. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  266. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
  267. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
  268. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  269. data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  270. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
  271. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
  272. data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  273. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
  274. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
  275. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
  276. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
  277. data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  278. data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
  279. data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  280. data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
  281. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
  282. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
  283. data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  284. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
  285. data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
  295. data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  296. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
  297. data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  298. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  299. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  300. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  307. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  308. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  309. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  310. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  311. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  312. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  313. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
  314. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +126 -0
  315. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
  316. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
  317. data/vendor/eigen/Eigen/src/StlSupport/details.h +84 -0
  318. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
  319. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
  320. data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
  321. data/vendor/eigen/Eigen/src/misc/Kernel.h +79 -0
  322. data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
  323. data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
  324. data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
  325. data/vendor/eigen/Eigen/src/misc/lapacke.h +16291 -0
  326. data/vendor/eigen/Eigen/src/misc/lapacke_mangling.h +17 -0
  327. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +332 -0
  328. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
  329. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
  330. data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  331. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +163 -0
  332. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  333. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
  334. data/vendor/eigen/README.md +3 -0
  335. data/vendor/eigen/bench/README.txt +55 -0
  336. data/vendor/eigen/bench/btl/COPYING +340 -0
  337. data/vendor/eigen/bench/btl/README +154 -0
  338. data/vendor/eigen/bench/tensors/README +21 -0
  339. data/vendor/eigen/blas/README.txt +6 -0
  340. data/vendor/eigen/demos/mandelbrot/README +10 -0
  341. data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
  342. data/vendor/eigen/demos/opengl/README +13 -0
  343. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
  344. data/vendor/eigen/unsupported/README.txt +50 -0
  345. data/vendor/tomotopy/LICENSE +21 -0
  346. data/vendor/tomotopy/README.kr.rst +375 -0
  347. data/vendor/tomotopy/README.rst +382 -0
  348. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
  349. data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
  350. data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
  351. data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
  352. data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
  353. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
  354. data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
  355. data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
  356. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
  357. data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
  358. data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
  359. data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
  360. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
  361. data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
  362. data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
  363. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
  364. data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
  365. data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
  366. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
  367. data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
  368. data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
  369. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
  370. data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
  371. data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
  372. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
  373. data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
  374. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
  375. data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
  376. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
  377. data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
  378. data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
  379. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
  380. data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
  381. data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
  382. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
  383. data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
  384. data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
  385. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
  386. data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
  387. data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
  388. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
  389. data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
  390. data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
  391. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
  392. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
  393. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +169 -0
  394. data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
  395. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
  396. data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
  397. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
  398. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
  399. data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
  400. data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
  401. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
  402. data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
  403. data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
  404. data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
  405. data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
  406. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
  407. data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
  408. data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
  409. data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
  410. data/vendor/tomotopy/src/Utils/exception.h +28 -0
  411. data/vendor/tomotopy/src/Utils/math.h +281 -0
  412. data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
  413. data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
  414. data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
  415. data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
  416. data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
  417. data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
  418. data/vendor/tomotopy/src/Utils/text.hpp +49 -0
  419. data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
  420. metadata +531 -0
@@ -0,0 +1,101 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2014 Pedro Gonnet (pedro.gonnet@gmail.com)
5
+ // Copyright (C) 2016 Gael Guennebaud <gael.guennebaud@inria.fr>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_MATHFUNCTIONSIMPL_H
12
+ #define EIGEN_MATHFUNCTIONSIMPL_H
13
+
14
+ namespace Eigen {
15
+
16
+ namespace internal {
17
+
18
+ /** \internal \returns the hyperbolic tan of \a a (coeff-wise)
19
+ Doesn't do anything fancy, just a 13/6-degree rational interpolant which
20
+ is accurate up to a couple of ulp in the range [-9, 9], outside of which
21
+ the tanh(x) = +/-1.
22
+
23
+ This implementation works on both scalars and packets.
24
+ */
25
+ template<typename T>
26
+ T generic_fast_tanh_float(const T& a_x)
27
+ {
28
+ // Clamp the inputs to the range [-9, 9] since anything outside
29
+ // this range is +/-1.0f in single-precision.
30
+ const T plus_9 = pset1<T>(9.f);
31
+ const T minus_9 = pset1<T>(-9.f);
32
+ // NOTE GCC prior to 6.3 might improperly optimize this max/min
33
+ // step such that if a_x is nan, x will be either 9 or -9,
34
+ // and tanh will return 1 or -1 instead of nan.
35
+ // This is supposed to be fixed in gcc6.3,
36
+ // see: https://gcc.gnu.org/bugzilla/show_bug.cgi?id=72867
37
+ const T x = pmax(minus_9,pmin(plus_9,a_x));
38
+ // The monomial coefficients of the numerator polynomial (odd).
39
+ const T alpha_1 = pset1<T>(4.89352455891786e-03f);
40
+ const T alpha_3 = pset1<T>(6.37261928875436e-04f);
41
+ const T alpha_5 = pset1<T>(1.48572235717979e-05f);
42
+ const T alpha_7 = pset1<T>(5.12229709037114e-08f);
43
+ const T alpha_9 = pset1<T>(-8.60467152213735e-11f);
44
+ const T alpha_11 = pset1<T>(2.00018790482477e-13f);
45
+ const T alpha_13 = pset1<T>(-2.76076847742355e-16f);
46
+
47
+ // The monomial coefficients of the denominator polynomial (even).
48
+ const T beta_0 = pset1<T>(4.89352518554385e-03f);
49
+ const T beta_2 = pset1<T>(2.26843463243900e-03f);
50
+ const T beta_4 = pset1<T>(1.18534705686654e-04f);
51
+ const T beta_6 = pset1<T>(1.19825839466702e-06f);
52
+
53
+ // Since the polynomials are odd/even, we need x^2.
54
+ const T x2 = pmul(x, x);
55
+
56
+ // Evaluate the numerator polynomial p.
57
+ T p = pmadd(x2, alpha_13, alpha_11);
58
+ p = pmadd(x2, p, alpha_9);
59
+ p = pmadd(x2, p, alpha_7);
60
+ p = pmadd(x2, p, alpha_5);
61
+ p = pmadd(x2, p, alpha_3);
62
+ p = pmadd(x2, p, alpha_1);
63
+ p = pmul(x, p);
64
+
65
+ // Evaluate the denominator polynomial p.
66
+ T q = pmadd(x2, beta_6, beta_4);
67
+ q = pmadd(x2, q, beta_2);
68
+ q = pmadd(x2, q, beta_0);
69
+
70
+ // Divide the numerator by the denominator.
71
+ return pdiv(p, q);
72
+ }
73
+
74
+ template<typename RealScalar>
75
+ EIGEN_STRONG_INLINE
76
+ RealScalar positive_real_hypot(const RealScalar& x, const RealScalar& y)
77
+ {
78
+ EIGEN_USING_STD_MATH(sqrt);
79
+ RealScalar p, qp;
80
+ p = numext::maxi(x,y);
81
+ if(p==RealScalar(0)) return RealScalar(0);
82
+ qp = numext::mini(y,x) / p;
83
+ return p * sqrt(RealScalar(1) + qp*qp);
84
+ }
85
+
86
+ template<typename Scalar>
87
+ struct hypot_impl
88
+ {
89
+ typedef typename NumTraits<Scalar>::Real RealScalar;
90
+ static inline RealScalar run(const Scalar& x, const Scalar& y)
91
+ {
92
+ EIGEN_USING_STD_MATH(abs);
93
+ return positive_real_hypot<RealScalar>(abs(x), abs(y));
94
+ }
95
+ };
96
+
97
+ } // end namespace internal
98
+
99
+ } // end namespace Eigen
100
+
101
+ #endif // EIGEN_MATHFUNCTIONSIMPL_H
@@ -0,0 +1,459 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2006-2010 Benoit Jacob <jacob.benoit.1@gmail.com>
5
+ // Copyright (C) 2008-2009 Gael Guennebaud <gael.guennebaud@inria.fr>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_MATRIX_H
12
+ #define EIGEN_MATRIX_H
13
+
14
+ namespace Eigen {
15
+
16
+ namespace internal {
17
+ template<typename _Scalar, int _Rows, int _Cols, int _Options, int _MaxRows, int _MaxCols>
18
+ struct traits<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
19
+ {
20
+ private:
21
+ enum { size = internal::size_at_compile_time<_Rows,_Cols>::ret };
22
+ typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
23
+ enum {
24
+ row_major_bit = _Options&RowMajor ? RowMajorBit : 0,
25
+ is_dynamic_size_storage = _MaxRows==Dynamic || _MaxCols==Dynamic,
26
+ max_size = is_dynamic_size_storage ? Dynamic : _MaxRows*_MaxCols,
27
+ default_alignment = compute_default_alignment<_Scalar,max_size>::value,
28
+ actual_alignment = ((_Options&DontAlign)==0) ? default_alignment : 0,
29
+ required_alignment = unpacket_traits<PacketScalar>::alignment,
30
+ packet_access_bit = (packet_traits<_Scalar>::Vectorizable && (EIGEN_UNALIGNED_VECTORIZE || (actual_alignment>=required_alignment))) ? PacketAccessBit : 0
31
+ };
32
+
33
+ public:
34
+ typedef _Scalar Scalar;
35
+ typedef Dense StorageKind;
36
+ typedef Eigen::Index StorageIndex;
37
+ typedef MatrixXpr XprKind;
38
+ enum {
39
+ RowsAtCompileTime = _Rows,
40
+ ColsAtCompileTime = _Cols,
41
+ MaxRowsAtCompileTime = _MaxRows,
42
+ MaxColsAtCompileTime = _MaxCols,
43
+ Flags = compute_matrix_flags<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::ret,
44
+ Options = _Options,
45
+ InnerStrideAtCompileTime = 1,
46
+ OuterStrideAtCompileTime = (Options&RowMajor) ? ColsAtCompileTime : RowsAtCompileTime,
47
+
48
+ // FIXME, the following flag in only used to define NeedsToAlign in PlainObjectBase
49
+ EvaluatorFlags = LinearAccessBit | DirectAccessBit | packet_access_bit | row_major_bit,
50
+ Alignment = actual_alignment
51
+ };
52
+ };
53
+ }
54
+
55
+ /** \class Matrix
56
+ * \ingroup Core_Module
57
+ *
58
+ * \brief The matrix class, also used for vectors and row-vectors
59
+ *
60
+ * The %Matrix class is the work-horse for all \em dense (\ref dense "note") matrices and vectors within Eigen.
61
+ * Vectors are matrices with one column, and row-vectors are matrices with one row.
62
+ *
63
+ * The %Matrix class encompasses \em both fixed-size and dynamic-size objects (\ref fixedsize "note").
64
+ *
65
+ * The first three template parameters are required:
66
+ * \tparam _Scalar Numeric type, e.g. float, double, int or std::complex<float>.
67
+ * User defined scalar types are supported as well (see \ref user_defined_scalars "here").
68
+ * \tparam _Rows Number of rows, or \b Dynamic
69
+ * \tparam _Cols Number of columns, or \b Dynamic
70
+ *
71
+ * The remaining template parameters are optional -- in most cases you don't have to worry about them.
72
+ * \tparam _Options A combination of either \b #RowMajor or \b #ColMajor, and of either
73
+ * \b #AutoAlign or \b #DontAlign.
74
+ * The former controls \ref TopicStorageOrders "storage order", and defaults to column-major. The latter controls alignment, which is required
75
+ * for vectorization. It defaults to aligning matrices except for fixed sizes that aren't a multiple of the packet size.
76
+ * \tparam _MaxRows Maximum number of rows. Defaults to \a _Rows (\ref maxrows "note").
77
+ * \tparam _MaxCols Maximum number of columns. Defaults to \a _Cols (\ref maxrows "note").
78
+ *
79
+ * Eigen provides a number of typedefs covering the usual cases. Here are some examples:
80
+ *
81
+ * \li \c Matrix2d is a 2x2 square matrix of doubles (\c Matrix<double, 2, 2>)
82
+ * \li \c Vector4f is a vector of 4 floats (\c Matrix<float, 4, 1>)
83
+ * \li \c RowVector3i is a row-vector of 3 ints (\c Matrix<int, 1, 3>)
84
+ *
85
+ * \li \c MatrixXf is a dynamic-size matrix of floats (\c Matrix<float, Dynamic, Dynamic>)
86
+ * \li \c VectorXf is a dynamic-size vector of floats (\c Matrix<float, Dynamic, 1>)
87
+ *
88
+ * \li \c Matrix2Xf is a partially fixed-size (dynamic-size) matrix of floats (\c Matrix<float, 2, Dynamic>)
89
+ * \li \c MatrixX3d is a partially dynamic-size (fixed-size) matrix of double (\c Matrix<double, Dynamic, 3>)
90
+ *
91
+ * See \link matrixtypedefs this page \endlink for a complete list of predefined \em %Matrix and \em Vector typedefs.
92
+ *
93
+ * You can access elements of vectors and matrices using normal subscripting:
94
+ *
95
+ * \code
96
+ * Eigen::VectorXd v(10);
97
+ * v[0] = 0.1;
98
+ * v[1] = 0.2;
99
+ * v(0) = 0.3;
100
+ * v(1) = 0.4;
101
+ *
102
+ * Eigen::MatrixXi m(10, 10);
103
+ * m(0, 1) = 1;
104
+ * m(0, 2) = 2;
105
+ * m(0, 3) = 3;
106
+ * \endcode
107
+ *
108
+ * This class can be extended with the help of the plugin mechanism described on the page
109
+ * \ref TopicCustomizing_Plugins by defining the preprocessor symbol \c EIGEN_MATRIX_PLUGIN.
110
+ *
111
+ * <i><b>Some notes:</b></i>
112
+ *
113
+ * <dl>
114
+ * <dt><b>\anchor dense Dense versus sparse:</b></dt>
115
+ * <dd>This %Matrix class handles dense, not sparse matrices and vectors. For sparse matrices and vectors, see the Sparse module.
116
+ *
117
+ * Dense matrices and vectors are plain usual arrays of coefficients. All the coefficients are stored, in an ordinary contiguous array.
118
+ * This is unlike Sparse matrices and vectors where the coefficients are stored as a list of nonzero coefficients.</dd>
119
+ *
120
+ * <dt><b>\anchor fixedsize Fixed-size versus dynamic-size:</b></dt>
121
+ * <dd>Fixed-size means that the numbers of rows and columns are known are compile-time. In this case, Eigen allocates the array
122
+ * of coefficients as a fixed-size array, as a class member. This makes sense for very small matrices, typically up to 4x4, sometimes up
123
+ * to 16x16. Larger matrices should be declared as dynamic-size even if one happens to know their size at compile-time.
124
+ *
125
+ * Dynamic-size means that the numbers of rows or columns are not necessarily known at compile-time. In this case they are runtime
126
+ * variables, and the array of coefficients is allocated dynamically on the heap.
127
+ *
128
+ * Note that \em dense matrices, be they Fixed-size or Dynamic-size, <em>do not</em> expand dynamically in the sense of a std::map.
129
+ * If you want this behavior, see the Sparse module.</dd>
130
+ *
131
+ * <dt><b>\anchor maxrows _MaxRows and _MaxCols:</b></dt>
132
+ * <dd>In most cases, one just leaves these parameters to the default values.
133
+ * These parameters mean the maximum size of rows and columns that the matrix may have. They are useful in cases
134
+ * when the exact numbers of rows and columns are not known are compile-time, but it is known at compile-time that they cannot
135
+ * exceed a certain value. This happens when taking dynamic-size blocks inside fixed-size matrices: in this case _MaxRows and _MaxCols
136
+ * are the dimensions of the original matrix, while _Rows and _Cols are Dynamic.</dd>
137
+ * </dl>
138
+ *
139
+ * <i><b>ABI and storage layout</b></i>
140
+ *
141
+ * The table below summarizes the ABI of some possible Matrix instances which is fixed thorough the lifetime of Eigen 3.
142
+ * <table class="manual">
143
+ * <tr><th>Matrix type</th><th>Equivalent C structure</th></tr>
144
+ * <tr><td>\code Matrix<T,Dynamic,Dynamic> \endcode</td><td>\code
145
+ * struct {
146
+ * T *data; // with (size_t(data)%EIGEN_MAX_ALIGN_BYTES)==0
147
+ * Eigen::Index rows, cols;
148
+ * };
149
+ * \endcode</td></tr>
150
+ * <tr class="alt"><td>\code
151
+ * Matrix<T,Dynamic,1>
152
+ * Matrix<T,1,Dynamic> \endcode</td><td>\code
153
+ * struct {
154
+ * T *data; // with (size_t(data)%EIGEN_MAX_ALIGN_BYTES)==0
155
+ * Eigen::Index size;
156
+ * };
157
+ * \endcode</td></tr>
158
+ * <tr><td>\code Matrix<T,Rows,Cols> \endcode</td><td>\code
159
+ * struct {
160
+ * T data[Rows*Cols]; // with (size_t(data)%A(Rows*Cols*sizeof(T)))==0
161
+ * };
162
+ * \endcode</td></tr>
163
+ * <tr class="alt"><td>\code Matrix<T,Dynamic,Dynamic,0,MaxRows,MaxCols> \endcode</td><td>\code
164
+ * struct {
165
+ * T data[MaxRows*MaxCols]; // with (size_t(data)%A(MaxRows*MaxCols*sizeof(T)))==0
166
+ * Eigen::Index rows, cols;
167
+ * };
168
+ * \endcode</td></tr>
169
+ * </table>
170
+ * Note that in this table Rows, Cols, MaxRows and MaxCols are all positive integers. A(S) is defined to the largest possible power-of-two
171
+ * smaller to EIGEN_MAX_STATIC_ALIGN_BYTES.
172
+ *
173
+ * \see MatrixBase for the majority of the API methods for matrices, \ref TopicClassHierarchy,
174
+ * \ref TopicStorageOrders
175
+ */
176
+
177
+ template<typename _Scalar, int _Rows, int _Cols, int _Options, int _MaxRows, int _MaxCols>
178
+ class Matrix
179
+ : public PlainObjectBase<Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols> >
180
+ {
181
+ public:
182
+
183
+ /** \brief Base class typedef.
184
+ * \sa PlainObjectBase
185
+ */
186
+ typedef PlainObjectBase<Matrix> Base;
187
+
188
+ enum { Options = _Options };
189
+
190
+ EIGEN_DENSE_PUBLIC_INTERFACE(Matrix)
191
+
192
+ typedef typename Base::PlainObject PlainObject;
193
+
194
+ using Base::base;
195
+ using Base::coeffRef;
196
+
197
+ /**
198
+ * \brief Assigns matrices to each other.
199
+ *
200
+ * \note This is a special case of the templated operator=. Its purpose is
201
+ * to prevent a default operator= from hiding the templated operator=.
202
+ *
203
+ * \callgraph
204
+ */
205
+ EIGEN_DEVICE_FUNC
206
+ EIGEN_STRONG_INLINE Matrix& operator=(const Matrix& other)
207
+ {
208
+ return Base::_set(other);
209
+ }
210
+
211
+ /** \internal
212
+ * \brief Copies the value of the expression \a other into \c *this with automatic resizing.
213
+ *
214
+ * *this might be resized to match the dimensions of \a other. If *this was a null matrix (not already initialized),
215
+ * it will be initialized.
216
+ *
217
+ * Note that copying a row-vector into a vector (and conversely) is allowed.
218
+ * The resizing, if any, is then done in the appropriate way so that row-vectors
219
+ * remain row-vectors and vectors remain vectors.
220
+ */
221
+ template<typename OtherDerived>
222
+ EIGEN_DEVICE_FUNC
223
+ EIGEN_STRONG_INLINE Matrix& operator=(const DenseBase<OtherDerived>& other)
224
+ {
225
+ return Base::_set(other);
226
+ }
227
+
228
+ /* Here, doxygen failed to copy the brief information when using \copydoc */
229
+
230
+ /**
231
+ * \brief Copies the generic expression \a other into *this.
232
+ * \copydetails DenseBase::operator=(const EigenBase<OtherDerived> &other)
233
+ */
234
+ template<typename OtherDerived>
235
+ EIGEN_DEVICE_FUNC
236
+ EIGEN_STRONG_INLINE Matrix& operator=(const EigenBase<OtherDerived> &other)
237
+ {
238
+ return Base::operator=(other);
239
+ }
240
+
241
+ template<typename OtherDerived>
242
+ EIGEN_DEVICE_FUNC
243
+ EIGEN_STRONG_INLINE Matrix& operator=(const ReturnByValue<OtherDerived>& func)
244
+ {
245
+ return Base::operator=(func);
246
+ }
247
+
248
+ /** \brief Default constructor.
249
+ *
250
+ * For fixed-size matrices, does nothing.
251
+ *
252
+ * For dynamic-size matrices, creates an empty matrix of size 0. Does not allocate any array. Such a matrix
253
+ * is called a null matrix. This constructor is the unique way to create null matrices: resizing
254
+ * a matrix to 0 is not supported.
255
+ *
256
+ * \sa resize(Index,Index)
257
+ */
258
+ EIGEN_DEVICE_FUNC
259
+ EIGEN_STRONG_INLINE Matrix() : Base()
260
+ {
261
+ Base::_check_template_params();
262
+ EIGEN_INITIALIZE_COEFFS_IF_THAT_OPTION_IS_ENABLED
263
+ }
264
+
265
+ // FIXME is it still needed
266
+ EIGEN_DEVICE_FUNC
267
+ explicit Matrix(internal::constructor_without_unaligned_array_assert)
268
+ : Base(internal::constructor_without_unaligned_array_assert())
269
+ { Base::_check_template_params(); EIGEN_INITIALIZE_COEFFS_IF_THAT_OPTION_IS_ENABLED }
270
+
271
+ #if EIGEN_HAS_RVALUE_REFERENCES
272
+ EIGEN_DEVICE_FUNC
273
+ Matrix(Matrix&& other) EIGEN_NOEXCEPT_IF(std::is_nothrow_move_constructible<Scalar>::value)
274
+ : Base(std::move(other))
275
+ {
276
+ Base::_check_template_params();
277
+ }
278
+ EIGEN_DEVICE_FUNC
279
+ Matrix& operator=(Matrix&& other) EIGEN_NOEXCEPT_IF(std::is_nothrow_move_assignable<Scalar>::value)
280
+ {
281
+ other.swap(*this);
282
+ return *this;
283
+ }
284
+ #endif
285
+
286
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
287
+
288
+ // This constructor is for both 1x1 matrices and dynamic vectors
289
+ template<typename T>
290
+ EIGEN_DEVICE_FUNC
291
+ EIGEN_STRONG_INLINE explicit Matrix(const T& x)
292
+ {
293
+ Base::_check_template_params();
294
+ Base::template _init1<T>(x);
295
+ }
296
+
297
+ template<typename T0, typename T1>
298
+ EIGEN_DEVICE_FUNC
299
+ EIGEN_STRONG_INLINE Matrix(const T0& x, const T1& y)
300
+ {
301
+ Base::_check_template_params();
302
+ Base::template _init2<T0,T1>(x, y);
303
+ }
304
+ #else
305
+ /** \brief Constructs a fixed-sized matrix initialized with coefficients starting at \a data */
306
+ EIGEN_DEVICE_FUNC
307
+ explicit Matrix(const Scalar *data);
308
+
309
+ /** \brief Constructs a vector or row-vector with given dimension. \only_for_vectors
310
+ *
311
+ * This is useful for dynamic-size vectors. For fixed-size vectors,
312
+ * it is redundant to pass these parameters, so one should use the default constructor
313
+ * Matrix() instead.
314
+ *
315
+ * \warning This constructor is disabled for fixed-size \c 1x1 matrices. For instance,
316
+ * calling Matrix<double,1,1>(1) will call the initialization constructor: Matrix(const Scalar&).
317
+ * For fixed-size \c 1x1 matrices it is therefore recommended to use the default
318
+ * constructor Matrix() instead, especially when using one of the non standard
319
+ * \c EIGEN_INITIALIZE_MATRICES_BY_{ZERO,\c NAN} macros (see \ref TopicPreprocessorDirectives).
320
+ */
321
+ EIGEN_STRONG_INLINE explicit Matrix(Index dim);
322
+ /** \brief Constructs an initialized 1x1 matrix with the given coefficient */
323
+ Matrix(const Scalar& x);
324
+ /** \brief Constructs an uninitialized matrix with \a rows rows and \a cols columns.
325
+ *
326
+ * This is useful for dynamic-size matrices. For fixed-size matrices,
327
+ * it is redundant to pass these parameters, so one should use the default constructor
328
+ * Matrix() instead.
329
+ *
330
+ * \warning This constructor is disabled for fixed-size \c 1x2 and \c 2x1 vectors. For instance,
331
+ * calling Matrix2f(2,1) will call the initialization constructor: Matrix(const Scalar& x, const Scalar& y).
332
+ * For fixed-size \c 1x2 or \c 2x1 vectors it is therefore recommended to use the default
333
+ * constructor Matrix() instead, especially when using one of the non standard
334
+ * \c EIGEN_INITIALIZE_MATRICES_BY_{ZERO,\c NAN} macros (see \ref TopicPreprocessorDirectives).
335
+ */
336
+ EIGEN_DEVICE_FUNC
337
+ Matrix(Index rows, Index cols);
338
+
339
+ /** \brief Constructs an initialized 2D vector with given coefficients */
340
+ Matrix(const Scalar& x, const Scalar& y);
341
+ #endif
342
+
343
+ /** \brief Constructs an initialized 3D vector with given coefficients */
344
+ EIGEN_DEVICE_FUNC
345
+ EIGEN_STRONG_INLINE Matrix(const Scalar& x, const Scalar& y, const Scalar& z)
346
+ {
347
+ Base::_check_template_params();
348
+ EIGEN_STATIC_ASSERT_VECTOR_SPECIFIC_SIZE(Matrix, 3)
349
+ m_storage.data()[0] = x;
350
+ m_storage.data()[1] = y;
351
+ m_storage.data()[2] = z;
352
+ }
353
+ /** \brief Constructs an initialized 4D vector with given coefficients */
354
+ EIGEN_DEVICE_FUNC
355
+ EIGEN_STRONG_INLINE Matrix(const Scalar& x, const Scalar& y, const Scalar& z, const Scalar& w)
356
+ {
357
+ Base::_check_template_params();
358
+ EIGEN_STATIC_ASSERT_VECTOR_SPECIFIC_SIZE(Matrix, 4)
359
+ m_storage.data()[0] = x;
360
+ m_storage.data()[1] = y;
361
+ m_storage.data()[2] = z;
362
+ m_storage.data()[3] = w;
363
+ }
364
+
365
+
366
+ /** \brief Copy constructor */
367
+ EIGEN_DEVICE_FUNC
368
+ EIGEN_STRONG_INLINE Matrix(const Matrix& other) : Base(other)
369
+ { }
370
+
371
+ /** \brief Copy constructor for generic expressions.
372
+ * \sa MatrixBase::operator=(const EigenBase<OtherDerived>&)
373
+ */
374
+ template<typename OtherDerived>
375
+ EIGEN_DEVICE_FUNC
376
+ EIGEN_STRONG_INLINE Matrix(const EigenBase<OtherDerived> &other)
377
+ : Base(other.derived())
378
+ { }
379
+
380
+ EIGEN_DEVICE_FUNC inline Index innerStride() const { return 1; }
381
+ EIGEN_DEVICE_FUNC inline Index outerStride() const { return this->innerSize(); }
382
+
383
+ /////////// Geometry module ///////////
384
+
385
+ template<typename OtherDerived>
386
+ EIGEN_DEVICE_FUNC
387
+ explicit Matrix(const RotationBase<OtherDerived,ColsAtCompileTime>& r);
388
+ template<typename OtherDerived>
389
+ EIGEN_DEVICE_FUNC
390
+ Matrix& operator=(const RotationBase<OtherDerived,ColsAtCompileTime>& r);
391
+
392
+ // allow to extend Matrix outside Eigen
393
+ #ifdef EIGEN_MATRIX_PLUGIN
394
+ #include EIGEN_MATRIX_PLUGIN
395
+ #endif
396
+
397
+ protected:
398
+ template <typename Derived, typename OtherDerived, bool IsVector>
399
+ friend struct internal::conservative_resize_like_impl;
400
+
401
+ using Base::m_storage;
402
+ };
403
+
404
+ /** \defgroup matrixtypedefs Global matrix typedefs
405
+ *
406
+ * \ingroup Core_Module
407
+ *
408
+ * Eigen defines several typedef shortcuts for most common matrix and vector types.
409
+ *
410
+ * The general patterns are the following:
411
+ *
412
+ * \c MatrixSizeType where \c Size can be \c 2,\c 3,\c 4 for fixed size square matrices or \c X for dynamic size,
413
+ * and where \c Type can be \c i for integer, \c f for float, \c d for double, \c cf for complex float, \c cd
414
+ * for complex double.
415
+ *
416
+ * For example, \c Matrix3d is a fixed-size 3x3 matrix type of doubles, and \c MatrixXf is a dynamic-size matrix of floats.
417
+ *
418
+ * There are also \c VectorSizeType and \c RowVectorSizeType which are self-explanatory. For example, \c Vector4cf is
419
+ * a fixed-size vector of 4 complex floats.
420
+ *
421
+ * \sa class Matrix
422
+ */
423
+
424
+ #define EIGEN_MAKE_TYPEDEFS(Type, TypeSuffix, Size, SizeSuffix) \
425
+ /** \ingroup matrixtypedefs */ \
426
+ typedef Matrix<Type, Size, Size> Matrix##SizeSuffix##TypeSuffix; \
427
+ /** \ingroup matrixtypedefs */ \
428
+ typedef Matrix<Type, Size, 1> Vector##SizeSuffix##TypeSuffix; \
429
+ /** \ingroup matrixtypedefs */ \
430
+ typedef Matrix<Type, 1, Size> RowVector##SizeSuffix##TypeSuffix;
431
+
432
+ #define EIGEN_MAKE_FIXED_TYPEDEFS(Type, TypeSuffix, Size) \
433
+ /** \ingroup matrixtypedefs */ \
434
+ typedef Matrix<Type, Size, Dynamic> Matrix##Size##X##TypeSuffix; \
435
+ /** \ingroup matrixtypedefs */ \
436
+ typedef Matrix<Type, Dynamic, Size> Matrix##X##Size##TypeSuffix;
437
+
438
+ #define EIGEN_MAKE_TYPEDEFS_ALL_SIZES(Type, TypeSuffix) \
439
+ EIGEN_MAKE_TYPEDEFS(Type, TypeSuffix, 2, 2) \
440
+ EIGEN_MAKE_TYPEDEFS(Type, TypeSuffix, 3, 3) \
441
+ EIGEN_MAKE_TYPEDEFS(Type, TypeSuffix, 4, 4) \
442
+ EIGEN_MAKE_TYPEDEFS(Type, TypeSuffix, Dynamic, X) \
443
+ EIGEN_MAKE_FIXED_TYPEDEFS(Type, TypeSuffix, 2) \
444
+ EIGEN_MAKE_FIXED_TYPEDEFS(Type, TypeSuffix, 3) \
445
+ EIGEN_MAKE_FIXED_TYPEDEFS(Type, TypeSuffix, 4)
446
+
447
+ EIGEN_MAKE_TYPEDEFS_ALL_SIZES(int, i)
448
+ EIGEN_MAKE_TYPEDEFS_ALL_SIZES(float, f)
449
+ EIGEN_MAKE_TYPEDEFS_ALL_SIZES(double, d)
450
+ EIGEN_MAKE_TYPEDEFS_ALL_SIZES(std::complex<float>, cf)
451
+ EIGEN_MAKE_TYPEDEFS_ALL_SIZES(std::complex<double>, cd)
452
+
453
+ #undef EIGEN_MAKE_TYPEDEFS_ALL_SIZES
454
+ #undef EIGEN_MAKE_TYPEDEFS
455
+ #undef EIGEN_MAKE_FIXED_TYPEDEFS
456
+
457
+ } // end namespace Eigen
458
+
459
+ #endif // EIGEN_MATRIX_H