tomoto 0.1.0

data/vendor/eigen/README.md

@@ -0,0 +1,3 @@
+**Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.**
+
+For more information go to http://eigen.tuxfamily.org/.

data/vendor/eigen/bench/README.txt

@@ -0,0 +1,55 @@
+
+This folder contains a couple of benchmark utities and Eigen benchmarks.
+
+****************************
+* bench_multi_compilers.sh *
+****************************
+
+This script allows to run a benchmark on a set of different compilers/compiler options.
+It takes two arguments:
+ - a file defining the list of the compilers with their options
+ - the .cpp file of the benchmark
+
+Examples:
+
+$ ./bench_multi_compilers.sh basicbench.cxxlist basicbenchmark.cpp
+
+    g++-4.1 -O3 -DNDEBUG -finline-limit=10000
+    3d-3x3   /   4d-4x4   /   Xd-4x4   /   Xd-20x20   /
+    0.271102   0.131416   0.422322   0.198633
+    0.201658   0.102436   0.397566   0.207282
+
+    g++-4.2 -O3 -DNDEBUG -finline-limit=10000
+    3d-3x3   /   4d-4x4   /   Xd-4x4   /   Xd-20x20   /
+    0.107805   0.0890579   0.30265   0.161843
+    0.127157   0.0712581   0.278341   0.191029
+
+    g++-4.3 -O3 -DNDEBUG -finline-limit=10000
+    3d-3x3   /   4d-4x4   /   Xd-4x4   /   Xd-20x20   /
+    0.134318   0.105291   0.3704   0.180966
+    0.137703   0.0732472   0.31225   0.202204
+
+    icpc -fast -DNDEBUG -fno-exceptions -no-inline-max-size
+    3d-3x3   /   4d-4x4   /   Xd-4x4   /   Xd-20x20   /
+    0.226145   0.0941319   0.371873   0.159433
+    0.109302   0.0837538   0.328102   0.173891
+
+
+$ ./bench_multi_compilers.sh ompbench.cxxlist ompbenchmark.cpp
+
+    g++-4.2 -O3 -DNDEBUG -finline-limit=10000 -fopenmp
+    double, fixed-size 4x4: 0.00165105s  0.0778739s
+    double, 32x32: 0.0654769s 0.075289s  => x0.869674 (2)
+    double, 128x128: 0.054148s 0.0419669s  => x1.29025 (2)
+    double, 512x512: 0.913799s 0.428533s  => x2.13239 (2)
+    double, 1024x1024: 14.5972s 9.3542s  => x1.5605 (2)
+
+    icpc -fast -DNDEBUG -fno-exceptions -no-inline-max-size -openmp
+    double, fixed-size 4x4: 0.000589848s  0.019949s
+    double, 32x32: 0.0682781s 0.0449722s  => x1.51823 (2)
+    double, 128x128: 0.0547509s 0.0435519s  => x1.25714 (2)
+    double, 512x512: 0.829436s 0.424438s  => x1.9542 (2)
+    double, 1024x1024: 14.5243s 10.7735s  => x1.34815 (2)
+
+
+

data/vendor/eigen/bench/btl/COPYING

@@ -0,0 +1,340 @@
+                    GNU GENERAL PUBLIC LICENSE
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+
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data/vendor/eigen/bench/btl/README

@@ -0,0 +1,154 @@
+Bench Template Library
+
+****************************************
+Introduction :
+
+The aim of this project is to compare the performance
+of available numerical libraries. The code is designed
+as generic and modular as possible. Thus, adding new
+numerical libraries or new numerical tests should
+require minimal effort.
+
+
+*****************************************
+
+Installation :
+
+BTL uses cmake / ctest:
+
+1 - create a build directory:
+
+  $ mkdir build
+  $ cd build
+
+2 - configure:
+
+  $ ccmake ..
+
+3 - run the bench using ctest:
+
+  $ ctest -V
+
+You can run the benchmarks only on libraries matching a given regular expression:
+  ctest -V -R <regexp>
+For instance:
+  ctest -V -R eigen2
+
+You can also select a given set of actions defining the environment variable BTL_CONFIG this way:
+  BTL_CONFIG="-a action1{:action2}*" ctest -V
+An exemple:
+  BTL_CONFIG="-a axpy:vector_matrix:trisolve:ata" ctest -V -R eigen2
+
+Finally, if bench results already exist (the bench*.dat files) then they merges by keeping the best for each matrix size. If you want to overwrite the previous ones you can simply add the "--overwrite" option:
+  BTL_CONFIG="-a axpy:vector_matrix:trisolve:ata --overwrite" ctest -V -R eigen2
+
+4 : Analyze the result. different data files (.dat) are produced in each libs directories.
+ If gnuplot is available, choose a directory name in the data directory to store the results and type:
+        $ cd data
+        $ mkdir my_directory
+        $ cp ../libs/*/*.dat my_directory
+ Build the data utilities in this (data) directory
+        make
+ Then you can look the raw data,
+        go_mean my_directory
+ or smooth the data first :
+	smooth_all.sh my_directory
+	go_mean my_directory_smooth
+
+
+*************************************************
+
+Files and directories :
+
+ generic_bench : all the bench sources common to all libraries
+
+ actions : sources for different action wrappers (axpy, matrix-matrix product) to be tested.
+
+ libs/* : bench sources specific to each tested libraries.
+
+ machine_dep : directory used to store machine specific Makefile.in
+
+ data : directory used to store gnuplot scripts and data analysis utilities
+
+**************************************************
+
+Principles : the code modularity is achieved by defining two concepts :
+
+ ****** Action concept : This is a class defining which kind
+  of test must be performed (e.g. a matrix_vector_product).
+	An Action should define the following methods :
+
+        *** Ctor using the size of the problem (matrix or vector size) as an argument
+	    Action action(size);
+        *** initialize : this method initialize the calculation (e.g. initialize the matrices and vectors arguments)
+	    action.initialize();
+	*** calculate : this method actually launch the calculation to be benchmarked
+	    action.calculate;
+	*** nb_op_base() : this method returns the complexity of the calculate method (allowing the mflops evaluation)
+        *** name() : this method returns the name of the action (std::string)
+
+ ****** Interface concept : This is a class or namespace defining how to use a given library and
+  its specific containers (matrix and vector). Up to now an interface should following types
+
+	*** real_type : kind of float to be used (float or double)
+	*** stl_vector : must correspond to std::vector<real_type>
+	*** stl_matrix : must correspond to std::vector<stl_vector>
+	*** gene_vector : the vector type for this interface        --> e.g. (real_type *) for the C_interface
+	*** gene_matrix : the matrix type for this interface        --> e.g. (gene_vector *) for the C_interface
+
+	+ the following common methods
+
+        *** free_matrix(gene_matrix & A, int N)  dealocation of a N sized gene_matrix A
+        *** free_vector(gene_vector & B)  dealocation of a N sized gene_vector B
+        *** matrix_from_stl(gene_matrix & A, stl_matrix & A_stl) copy the content of an stl_matrix A_stl into a gene_matrix A.
+	     The allocation of A is done in this function.
+	*** vector_to_stl(gene_vector & B, stl_vector & B_stl)  copy the content of an stl_vector B_stl into a gene_vector B.
+	     The allocation of B is done in this function.
+        *** matrix_to_stl(gene_matrix & A, stl_matrix & A_stl) copy the content of an gene_matrix A into an stl_matrix A_stl.
+             The size of A_STL must corresponds to the size of A.
+        *** vector_to_stl(gene_vector & A, stl_vector & A_stl) copy the content of an gene_vector A into an stl_vector A_stl.
+             The size of B_STL must corresponds to the size of B.
+	*** copy_matrix(gene_matrix & source, gene_matrix & cible, int N) : copy the content of source in cible. Both source
+		and cible must be sized NxN.
+	*** copy_vector(gene_vector & source, gene_vector & cible, int N) : copy the content of source in cible. Both source
+ 		and cible must be sized N.
+
+	and the following method corresponding to the action one wants to be benchmarked :
+
+	***  matrix_vector_product(const gene_matrix & A, const gene_vector & B, gene_vector & X, int N)
+	***  matrix_matrix_product(const gene_matrix & A, const gene_matrix & B, gene_matrix & X, int N)
+        ***  ata_product(const gene_matrix & A, gene_matrix & X, int N)
+	***  aat_product(const gene_matrix & A, gene_matrix & X, int N)
+        ***  axpy(real coef, const gene_vector & X, gene_vector & Y, int N)
+
+ The bench algorithm (generic_bench/bench.hh) is templated with an action itself templated with
+ an interface. A typical main.cpp source stored in a given library directory libs/A_LIB
+ looks like :
+
+ bench< AN_ACTION < AN_INTERFACE > >( 10 , 1000 , 50 ) ;
+
+ this function will produce XY data file containing measured  mflops as a function of the size for 50
+ sizes between 10 and 10000.
+
+ This algorithm can be adapted by providing a given Perf_Analyzer object which determines how the time
+ measurements must be done. For example, the X86_Perf_Analyzer use the asm rdtsc function and provides
+ a very fast and accurate (but less portable) timing method. The default is the Portable_Perf_Analyzer
+ so
+
+ bench< AN_ACTION < AN_INTERFACE > >( 10 , 1000 , 50 ) ;
+
+ is equivalent to
+
+ bench< Portable_Perf_Analyzer,AN_ACTION < AN_INTERFACE > >( 10 , 1000 , 50 ) ;
+
+ If your system supports it we suggest to use a mixed implementation (X86_perf_Analyzer+Portable_Perf_Analyzer).
+ replace
+     bench<Portable_Perf_Analyzer,Action>(size_min,size_max,nb_point);
+ with
+     bench<Mixed_Perf_Analyzer,Action>(size_min,size_max,nb_point);
+ in generic/bench.hh
+
+.
+
+
+