tomoto 0.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +7 -0
- data/CHANGELOG.md +3 -0
- data/LICENSE.txt +22 -0
- data/README.md +123 -0
- data/ext/tomoto/ext.cpp +245 -0
- data/ext/tomoto/extconf.rb +28 -0
- data/lib/tomoto.rb +12 -0
- data/lib/tomoto/ct.rb +11 -0
- data/lib/tomoto/hdp.rb +11 -0
- data/lib/tomoto/lda.rb +67 -0
- data/lib/tomoto/version.rb +3 -0
- data/vendor/EigenRand/EigenRand/Core.h +1139 -0
- data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
- data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
- data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
- data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
- data/vendor/EigenRand/EigenRand/EigenRand +19 -0
- data/vendor/EigenRand/EigenRand/Macro.h +24 -0
- data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
- data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
- data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
- data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
- data/vendor/EigenRand/EigenRand/doc.h +220 -0
- data/vendor/EigenRand/LICENSE +21 -0
- data/vendor/EigenRand/README.md +288 -0
- data/vendor/eigen/COPYING.BSD +26 -0
- data/vendor/eigen/COPYING.GPL +674 -0
- data/vendor/eigen/COPYING.LGPL +502 -0
- data/vendor/eigen/COPYING.MINPACK +52 -0
- data/vendor/eigen/COPYING.MPL2 +373 -0
- data/vendor/eigen/COPYING.README +18 -0
- data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
- data/vendor/eigen/Eigen/Cholesky +46 -0
- data/vendor/eigen/Eigen/CholmodSupport +48 -0
- data/vendor/eigen/Eigen/Core +537 -0
- data/vendor/eigen/Eigen/Dense +7 -0
- data/vendor/eigen/Eigen/Eigen +2 -0
- data/vendor/eigen/Eigen/Eigenvalues +61 -0
- data/vendor/eigen/Eigen/Geometry +62 -0
- data/vendor/eigen/Eigen/Householder +30 -0
- data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
- data/vendor/eigen/Eigen/Jacobi +33 -0
- data/vendor/eigen/Eigen/LU +50 -0
- data/vendor/eigen/Eigen/MetisSupport +35 -0
- data/vendor/eigen/Eigen/OrderingMethods +73 -0
- data/vendor/eigen/Eigen/PaStiXSupport +48 -0
- data/vendor/eigen/Eigen/PardisoSupport +35 -0
- data/vendor/eigen/Eigen/QR +51 -0
- data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
- data/vendor/eigen/Eigen/SPQRSupport +34 -0
- data/vendor/eigen/Eigen/SVD +51 -0
- data/vendor/eigen/Eigen/Sparse +36 -0
- data/vendor/eigen/Eigen/SparseCholesky +45 -0
- data/vendor/eigen/Eigen/SparseCore +69 -0
- data/vendor/eigen/Eigen/SparseLU +46 -0
- data/vendor/eigen/Eigen/SparseQR +37 -0
- data/vendor/eigen/Eigen/StdDeque +27 -0
- data/vendor/eigen/Eigen/StdList +26 -0
- data/vendor/eigen/Eigen/StdVector +27 -0
- data/vendor/eigen/Eigen/SuperLUSupport +64 -0
- data/vendor/eigen/Eigen/UmfPackSupport +40 -0
- data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
- data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
- data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
- data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
- data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
- data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
- data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
- data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
- data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
- data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
- data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
- data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
- data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
- data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
- data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
- data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
- data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
- data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
- data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
- data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
- data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
- data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
- data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
- data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
- data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
- data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
- data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
- data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
- data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
- data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
- data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
- data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
- data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
- data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
- data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
- data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
- data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
- data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
- data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
- data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
- data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
- data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
- data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
- data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
- data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
- data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
- data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
- data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
- data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
- data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
- data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
- data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
- data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
- data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
- data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
- data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
- data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
- data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
- data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
- data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
- data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
- data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
- data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
- data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
- data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
- data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
- data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
- data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
- data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
- data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
- data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
- data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
- data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
- data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
- data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
- data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
- data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
- data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
- data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
- data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
- data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
- data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
- data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
- data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
- data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
- data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
- data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
- data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
- data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
- data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
- data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
- data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
- data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
- data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
- data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
- data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
- data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
- data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
- data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
- data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
- data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
- data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
- data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
- data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
- data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
- data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
- data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
- data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
- data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
- data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
- data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
- data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
- data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
- data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
- data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
- data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
- data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
- data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
- data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
- data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
- data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
- data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
- data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
- data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
- data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
- data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
- data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
- data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
- data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
- data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
- data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
- data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
- data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
- data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
- data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
- data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
- data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
- data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
- data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +126 -0
- data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
- data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
- data/vendor/eigen/Eigen/src/StlSupport/details.h +84 -0
- data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
- data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
- data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
- data/vendor/eigen/Eigen/src/misc/Kernel.h +79 -0
- data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
- data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
- data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
- data/vendor/eigen/Eigen/src/misc/lapacke.h +16291 -0
- data/vendor/eigen/Eigen/src/misc/lapacke_mangling.h +17 -0
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +332 -0
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
- data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
- data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
- data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +163 -0
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
- data/vendor/eigen/README.md +3 -0
- data/vendor/eigen/bench/README.txt +55 -0
- data/vendor/eigen/bench/btl/COPYING +340 -0
- data/vendor/eigen/bench/btl/README +154 -0
- data/vendor/eigen/bench/tensors/README +21 -0
- data/vendor/eigen/blas/README.txt +6 -0
- data/vendor/eigen/demos/mandelbrot/README +10 -0
- data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
- data/vendor/eigen/demos/opengl/README +13 -0
- data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
- data/vendor/eigen/unsupported/README.txt +50 -0
- data/vendor/tomotopy/LICENSE +21 -0
- data/vendor/tomotopy/README.kr.rst +375 -0
- data/vendor/tomotopy/README.rst +382 -0
- data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
- data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
- data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
- data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
- data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
- data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
- data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
- data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
- data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
- data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
- data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
- data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
- data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
- data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
- data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
- data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
- data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
- data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
- data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
- data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
- data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
- data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
- data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
- data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
- data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
- data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
- data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
- data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
- data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
- data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
- data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
- data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
- data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
- data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
- data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
- data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
- data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
- data/vendor/tomotopy/src/Utils/AliasMethod.hpp +169 -0
- data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
- data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
- data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
- data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
- data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
- data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
- data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
- data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
- data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
- data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
- data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
- data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
- data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
- data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
- data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
- data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
- data/vendor/tomotopy/src/Utils/exception.h +28 -0
- data/vendor/tomotopy/src/Utils/math.h +281 -0
- data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
- data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
- data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
- data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
- data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
- data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
- data/vendor/tomotopy/src/Utils/text.hpp +49 -0
- data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
- metadata +531 -0
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// This file is part of Eigen, a lightweight C++ template library
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// for linear algebra.
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//
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// Copyright (C) 2009-2014 Gael Guennebaud <gael.guennebaud@inria.fr>
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//
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// This Source Code Form is subject to the terms of the Mozilla
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// Public License v. 2.0. If a copy of the MPL was not distributed
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// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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#ifndef EIGEN_SPARSE_SELFADJOINTVIEW_H
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#define EIGEN_SPARSE_SELFADJOINTVIEW_H
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namespace Eigen {
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/** \ingroup SparseCore_Module
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* \class SparseSelfAdjointView
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*
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* \brief Pseudo expression to manipulate a triangular sparse matrix as a selfadjoint matrix.
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*
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* \param MatrixType the type of the dense matrix storing the coefficients
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* \param Mode can be either \c #Lower or \c #Upper
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*
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* This class is an expression of a sefladjoint matrix from a triangular part of a matrix
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* with given dense storage of the coefficients. It is the return type of MatrixBase::selfadjointView()
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* and most of the time this is the only way that it is used.
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*
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* \sa SparseMatrixBase::selfadjointView()
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*/
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namespace internal {
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template<typename MatrixType, unsigned int Mode>
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struct traits<SparseSelfAdjointView<MatrixType,Mode> > : traits<MatrixType> {
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};
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template<int SrcMode,int DstMode,typename MatrixType,int DestOrder>
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void permute_symm_to_symm(const MatrixType& mat, SparseMatrix<typename MatrixType::Scalar,DestOrder,typename MatrixType::StorageIndex>& _dest, const typename MatrixType::StorageIndex* perm = 0);
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template<int Mode,typename MatrixType,int DestOrder>
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void permute_symm_to_fullsymm(const MatrixType& mat, SparseMatrix<typename MatrixType::Scalar,DestOrder,typename MatrixType::StorageIndex>& _dest, const typename MatrixType::StorageIndex* perm = 0);
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}
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template<typename MatrixType, unsigned int _Mode> class SparseSelfAdjointView
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: public EigenBase<SparseSelfAdjointView<MatrixType,_Mode> >
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{
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public:
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enum {
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Mode = _Mode,
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TransposeMode = ((Mode & Upper) ? Lower : 0) | ((Mode & Lower) ? Upper : 0),
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RowsAtCompileTime = internal::traits<SparseSelfAdjointView>::RowsAtCompileTime,
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ColsAtCompileTime = internal::traits<SparseSelfAdjointView>::ColsAtCompileTime
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};
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typedef EigenBase<SparseSelfAdjointView> Base;
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typedef typename MatrixType::Scalar Scalar;
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typedef typename MatrixType::StorageIndex StorageIndex;
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typedef Matrix<StorageIndex,Dynamic,1> VectorI;
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typedef typename internal::ref_selector<MatrixType>::non_const_type MatrixTypeNested;
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typedef typename internal::remove_all<MatrixTypeNested>::type _MatrixTypeNested;
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explicit inline SparseSelfAdjointView(MatrixType& matrix) : m_matrix(matrix)
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{
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eigen_assert(rows()==cols() && "SelfAdjointView is only for squared matrices");
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}
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inline Index rows() const { return m_matrix.rows(); }
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inline Index cols() const { return m_matrix.cols(); }
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/** \internal \returns a reference to the nested matrix */
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const _MatrixTypeNested& matrix() const { return m_matrix; }
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typename internal::remove_reference<MatrixTypeNested>::type& matrix() { return m_matrix; }
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/** \returns an expression of the matrix product between a sparse self-adjoint matrix \c *this and a sparse matrix \a rhs.
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*
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* Note that there is no algorithmic advantage of performing such a product compared to a general sparse-sparse matrix product.
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* Indeed, the SparseSelfadjointView operand is first copied into a temporary SparseMatrix before computing the product.
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*/
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template<typename OtherDerived>
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Product<SparseSelfAdjointView, OtherDerived>
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operator*(const SparseMatrixBase<OtherDerived>& rhs) const
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{
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return Product<SparseSelfAdjointView, OtherDerived>(*this, rhs.derived());
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}
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/** \returns an expression of the matrix product between a sparse matrix \a lhs and a sparse self-adjoint matrix \a rhs.
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*
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* Note that there is no algorithmic advantage of performing such a product compared to a general sparse-sparse matrix product.
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* Indeed, the SparseSelfadjointView operand is first copied into a temporary SparseMatrix before computing the product.
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*/
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template<typename OtherDerived> friend
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Product<OtherDerived, SparseSelfAdjointView>
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operator*(const SparseMatrixBase<OtherDerived>& lhs, const SparseSelfAdjointView& rhs)
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{
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return Product<OtherDerived, SparseSelfAdjointView>(lhs.derived(), rhs);
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}
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/** Efficient sparse self-adjoint matrix times dense vector/matrix product */
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template<typename OtherDerived>
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Product<SparseSelfAdjointView,OtherDerived>
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operator*(const MatrixBase<OtherDerived>& rhs) const
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{
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return Product<SparseSelfAdjointView,OtherDerived>(*this, rhs.derived());
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}
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/** Efficient dense vector/matrix times sparse self-adjoint matrix product */
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template<typename OtherDerived> friend
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Product<OtherDerived,SparseSelfAdjointView>
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operator*(const MatrixBase<OtherDerived>& lhs, const SparseSelfAdjointView& rhs)
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{
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return Product<OtherDerived,SparseSelfAdjointView>(lhs.derived(), rhs);
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}
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/** Perform a symmetric rank K update of the selfadjoint matrix \c *this:
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* \f$ this = this + \alpha ( u u^* ) \f$ where \a u is a vector or matrix.
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*
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* \returns a reference to \c *this
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*
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* To perform \f$ this = this + \alpha ( u^* u ) \f$ you can simply
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* call this function with u.adjoint().
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*/
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template<typename DerivedU>
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SparseSelfAdjointView& rankUpdate(const SparseMatrixBase<DerivedU>& u, const Scalar& alpha = Scalar(1));
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/** \returns an expression of P H P^-1 */
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// TODO implement twists in a more evaluator friendly fashion
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SparseSymmetricPermutationProduct<_MatrixTypeNested,Mode> twistedBy(const PermutationMatrix<Dynamic,Dynamic,StorageIndex>& perm) const
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{
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return SparseSymmetricPermutationProduct<_MatrixTypeNested,Mode>(m_matrix, perm);
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}
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template<typename SrcMatrixType,int SrcMode>
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SparseSelfAdjointView& operator=(const SparseSymmetricPermutationProduct<SrcMatrixType,SrcMode>& permutedMatrix)
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{
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internal::call_assignment_no_alias_no_transpose(*this, permutedMatrix);
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return *this;
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}
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SparseSelfAdjointView& operator=(const SparseSelfAdjointView& src)
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{
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PermutationMatrix<Dynamic,Dynamic,StorageIndex> pnull;
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return *this = src.twistedBy(pnull);
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}
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template<typename SrcMatrixType,unsigned int SrcMode>
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SparseSelfAdjointView& operator=(const SparseSelfAdjointView<SrcMatrixType,SrcMode>& src)
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{
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PermutationMatrix<Dynamic,Dynamic,StorageIndex> pnull;
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return *this = src.twistedBy(pnull);
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}
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void resize(Index rows, Index cols)
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{
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EIGEN_ONLY_USED_FOR_DEBUG(rows);
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EIGEN_ONLY_USED_FOR_DEBUG(cols);
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eigen_assert(rows == this->rows() && cols == this->cols()
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&& "SparseSelfadjointView::resize() does not actually allow to resize.");
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}
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protected:
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MatrixTypeNested m_matrix;
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//mutable VectorI m_countPerRow;
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//mutable VectorI m_countPerCol;
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private:
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template<typename Dest> void evalTo(Dest &) const;
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};
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/***************************************************************************
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* Implementation of SparseMatrixBase methods
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***************************************************************************/
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template<typename Derived>
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template<unsigned int UpLo>
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typename SparseMatrixBase<Derived>::template ConstSelfAdjointViewReturnType<UpLo>::Type SparseMatrixBase<Derived>::selfadjointView() const
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{
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return SparseSelfAdjointView<const Derived, UpLo>(derived());
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}
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template<typename Derived>
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template<unsigned int UpLo>
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typename SparseMatrixBase<Derived>::template SelfAdjointViewReturnType<UpLo>::Type SparseMatrixBase<Derived>::selfadjointView()
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{
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return SparseSelfAdjointView<Derived, UpLo>(derived());
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}
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/***************************************************************************
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* Implementation of SparseSelfAdjointView methods
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***************************************************************************/
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template<typename MatrixType, unsigned int Mode>
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template<typename DerivedU>
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SparseSelfAdjointView<MatrixType,Mode>&
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SparseSelfAdjointView<MatrixType,Mode>::rankUpdate(const SparseMatrixBase<DerivedU>& u, const Scalar& alpha)
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{
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SparseMatrix<Scalar,(MatrixType::Flags&RowMajorBit)?RowMajor:ColMajor> tmp = u * u.adjoint();
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if(alpha==Scalar(0))
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m_matrix = tmp.template triangularView<Mode>();
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else
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m_matrix += alpha * tmp.template triangularView<Mode>();
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return *this;
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}
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namespace internal {
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// TODO currently a selfadjoint expression has the form SelfAdjointView<.,.>
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// in the future selfadjoint-ness should be defined by the expression traits
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// such that Transpose<SelfAdjointView<.,.> > is valid. (currently TriangularBase::transpose() is overloaded to make it work)
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template<typename MatrixType, unsigned int Mode>
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struct evaluator_traits<SparseSelfAdjointView<MatrixType,Mode> >
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{
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typedef typename storage_kind_to_evaluator_kind<typename MatrixType::StorageKind>::Kind Kind;
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typedef SparseSelfAdjointShape Shape;
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};
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struct SparseSelfAdjoint2Sparse {};
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template<> struct AssignmentKind<SparseShape,SparseSelfAdjointShape> { typedef SparseSelfAdjoint2Sparse Kind; };
|
220
|
+
template<> struct AssignmentKind<SparseSelfAdjointShape,SparseShape> { typedef Sparse2Sparse Kind; };
|
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|
+
|
222
|
+
template< typename DstXprType, typename SrcXprType, typename Functor>
|
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|
+
struct Assignment<DstXprType, SrcXprType, Functor, SparseSelfAdjoint2Sparse>
|
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|
+
{
|
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|
+
typedef typename DstXprType::StorageIndex StorageIndex;
|
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|
+
typedef internal::assign_op<typename DstXprType::Scalar,typename SrcXprType::Scalar> AssignOpType;
|
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|
+
|
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|
+
template<typename DestScalar,int StorageOrder>
|
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|
+
static void run(SparseMatrix<DestScalar,StorageOrder,StorageIndex> &dst, const SrcXprType &src, const AssignOpType&/*func*/)
|
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|
+
{
|
231
|
+
internal::permute_symm_to_fullsymm<SrcXprType::Mode>(src.matrix(), dst);
|
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|
+
}
|
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|
+
|
234
|
+
// FIXME: the handling of += and -= in sparse matrices should be cleanup so that next two overloads could be reduced to:
|
235
|
+
template<typename DestScalar,int StorageOrder,typename AssignFunc>
|
236
|
+
static void run(SparseMatrix<DestScalar,StorageOrder,StorageIndex> &dst, const SrcXprType &src, const AssignFunc& func)
|
237
|
+
{
|
238
|
+
SparseMatrix<DestScalar,StorageOrder,StorageIndex> tmp(src.rows(),src.cols());
|
239
|
+
run(tmp, src, AssignOpType());
|
240
|
+
call_assignment_no_alias_no_transpose(dst, tmp, func);
|
241
|
+
}
|
242
|
+
|
243
|
+
template<typename DestScalar,int StorageOrder>
|
244
|
+
static void run(SparseMatrix<DestScalar,StorageOrder,StorageIndex> &dst, const SrcXprType &src,
|
245
|
+
const internal::add_assign_op<typename DstXprType::Scalar,typename SrcXprType::Scalar>& /* func */)
|
246
|
+
{
|
247
|
+
SparseMatrix<DestScalar,StorageOrder,StorageIndex> tmp(src.rows(),src.cols());
|
248
|
+
run(tmp, src, AssignOpType());
|
249
|
+
dst += tmp;
|
250
|
+
}
|
251
|
+
|
252
|
+
template<typename DestScalar,int StorageOrder>
|
253
|
+
static void run(SparseMatrix<DestScalar,StorageOrder,StorageIndex> &dst, const SrcXprType &src,
|
254
|
+
const internal::sub_assign_op<typename DstXprType::Scalar,typename SrcXprType::Scalar>& /* func */)
|
255
|
+
{
|
256
|
+
SparseMatrix<DestScalar,StorageOrder,StorageIndex> tmp(src.rows(),src.cols());
|
257
|
+
run(tmp, src, AssignOpType());
|
258
|
+
dst -= tmp;
|
259
|
+
}
|
260
|
+
|
261
|
+
template<typename DestScalar>
|
262
|
+
static void run(DynamicSparseMatrix<DestScalar,ColMajor,StorageIndex>& dst, const SrcXprType &src, const AssignOpType&/*func*/)
|
263
|
+
{
|
264
|
+
// TODO directly evaluate into dst;
|
265
|
+
SparseMatrix<DestScalar,ColMajor,StorageIndex> tmp(dst.rows(),dst.cols());
|
266
|
+
internal::permute_symm_to_fullsymm<SrcXprType::Mode>(src.matrix(), tmp);
|
267
|
+
dst = tmp;
|
268
|
+
}
|
269
|
+
};
|
270
|
+
|
271
|
+
} // end namespace internal
|
272
|
+
|
273
|
+
/***************************************************************************
|
274
|
+
* Implementation of sparse self-adjoint time dense matrix
|
275
|
+
***************************************************************************/
|
276
|
+
|
277
|
+
namespace internal {
|
278
|
+
|
279
|
+
template<int Mode, typename SparseLhsType, typename DenseRhsType, typename DenseResType, typename AlphaType>
|
280
|
+
inline void sparse_selfadjoint_time_dense_product(const SparseLhsType& lhs, const DenseRhsType& rhs, DenseResType& res, const AlphaType& alpha)
|
281
|
+
{
|
282
|
+
EIGEN_ONLY_USED_FOR_DEBUG(alpha);
|
283
|
+
|
284
|
+
typedef typename internal::nested_eval<SparseLhsType,DenseRhsType::MaxColsAtCompileTime>::type SparseLhsTypeNested;
|
285
|
+
typedef typename internal::remove_all<SparseLhsTypeNested>::type SparseLhsTypeNestedCleaned;
|
286
|
+
typedef evaluator<SparseLhsTypeNestedCleaned> LhsEval;
|
287
|
+
typedef typename LhsEval::InnerIterator LhsIterator;
|
288
|
+
typedef typename SparseLhsType::Scalar LhsScalar;
|
289
|
+
|
290
|
+
enum {
|
291
|
+
LhsIsRowMajor = (LhsEval::Flags&RowMajorBit)==RowMajorBit,
|
292
|
+
ProcessFirstHalf =
|
293
|
+
((Mode&(Upper|Lower))==(Upper|Lower))
|
294
|
+
|| ( (Mode&Upper) && !LhsIsRowMajor)
|
295
|
+
|| ( (Mode&Lower) && LhsIsRowMajor),
|
296
|
+
ProcessSecondHalf = !ProcessFirstHalf
|
297
|
+
};
|
298
|
+
|
299
|
+
SparseLhsTypeNested lhs_nested(lhs);
|
300
|
+
LhsEval lhsEval(lhs_nested);
|
301
|
+
|
302
|
+
// work on one column at once
|
303
|
+
for (Index k=0; k<rhs.cols(); ++k)
|
304
|
+
{
|
305
|
+
for (Index j=0; j<lhs.outerSize(); ++j)
|
306
|
+
{
|
307
|
+
LhsIterator i(lhsEval,j);
|
308
|
+
// handle diagonal coeff
|
309
|
+
if (ProcessSecondHalf)
|
310
|
+
{
|
311
|
+
while (i && i.index()<j) ++i;
|
312
|
+
if(i && i.index()==j)
|
313
|
+
{
|
314
|
+
res.coeffRef(j,k) += alpha * i.value() * rhs.coeff(j,k);
|
315
|
+
++i;
|
316
|
+
}
|
317
|
+
}
|
318
|
+
|
319
|
+
// premultiplied rhs for scatters
|
320
|
+
typename ScalarBinaryOpTraits<AlphaType, typename DenseRhsType::Scalar>::ReturnType rhs_j(alpha*rhs(j,k));
|
321
|
+
// accumulator for partial scalar product
|
322
|
+
typename DenseResType::Scalar res_j(0);
|
323
|
+
for(; (ProcessFirstHalf ? i && i.index() < j : i) ; ++i)
|
324
|
+
{
|
325
|
+
LhsScalar lhs_ij = i.value();
|
326
|
+
if(!LhsIsRowMajor) lhs_ij = numext::conj(lhs_ij);
|
327
|
+
res_j += lhs_ij * rhs.coeff(i.index(),k);
|
328
|
+
res(i.index(),k) += numext::conj(lhs_ij) * rhs_j;
|
329
|
+
}
|
330
|
+
res.coeffRef(j,k) += alpha * res_j;
|
331
|
+
|
332
|
+
// handle diagonal coeff
|
333
|
+
if (ProcessFirstHalf && i && (i.index()==j))
|
334
|
+
res.coeffRef(j,k) += alpha * i.value() * rhs.coeff(j,k);
|
335
|
+
}
|
336
|
+
}
|
337
|
+
}
|
338
|
+
|
339
|
+
|
340
|
+
template<typename LhsView, typename Rhs, int ProductType>
|
341
|
+
struct generic_product_impl<LhsView, Rhs, SparseSelfAdjointShape, DenseShape, ProductType>
|
342
|
+
: generic_product_impl_base<LhsView, Rhs, generic_product_impl<LhsView, Rhs, SparseSelfAdjointShape, DenseShape, ProductType> >
|
343
|
+
{
|
344
|
+
template<typename Dest>
|
345
|
+
static void scaleAndAddTo(Dest& dst, const LhsView& lhsView, const Rhs& rhs, const typename Dest::Scalar& alpha)
|
346
|
+
{
|
347
|
+
typedef typename LhsView::_MatrixTypeNested Lhs;
|
348
|
+
typedef typename nested_eval<Lhs,Dynamic>::type LhsNested;
|
349
|
+
typedef typename nested_eval<Rhs,Dynamic>::type RhsNested;
|
350
|
+
LhsNested lhsNested(lhsView.matrix());
|
351
|
+
RhsNested rhsNested(rhs);
|
352
|
+
|
353
|
+
internal::sparse_selfadjoint_time_dense_product<LhsView::Mode>(lhsNested, rhsNested, dst, alpha);
|
354
|
+
}
|
355
|
+
};
|
356
|
+
|
357
|
+
template<typename Lhs, typename RhsView, int ProductType>
|
358
|
+
struct generic_product_impl<Lhs, RhsView, DenseShape, SparseSelfAdjointShape, ProductType>
|
359
|
+
: generic_product_impl_base<Lhs, RhsView, generic_product_impl<Lhs, RhsView, DenseShape, SparseSelfAdjointShape, ProductType> >
|
360
|
+
{
|
361
|
+
template<typename Dest>
|
362
|
+
static void scaleAndAddTo(Dest& dst, const Lhs& lhs, const RhsView& rhsView, const typename Dest::Scalar& alpha)
|
363
|
+
{
|
364
|
+
typedef typename RhsView::_MatrixTypeNested Rhs;
|
365
|
+
typedef typename nested_eval<Lhs,Dynamic>::type LhsNested;
|
366
|
+
typedef typename nested_eval<Rhs,Dynamic>::type RhsNested;
|
367
|
+
LhsNested lhsNested(lhs);
|
368
|
+
RhsNested rhsNested(rhsView.matrix());
|
369
|
+
|
370
|
+
// transpose everything
|
371
|
+
Transpose<Dest> dstT(dst);
|
372
|
+
internal::sparse_selfadjoint_time_dense_product<RhsView::TransposeMode>(rhsNested.transpose(), lhsNested.transpose(), dstT, alpha);
|
373
|
+
}
|
374
|
+
};
|
375
|
+
|
376
|
+
// NOTE: these two overloads are needed to evaluate the sparse selfadjoint view into a full sparse matrix
|
377
|
+
// TODO: maybe the copy could be handled by generic_product_impl so that these overloads would not be needed anymore
|
378
|
+
|
379
|
+
template<typename LhsView, typename Rhs, int ProductTag>
|
380
|
+
struct product_evaluator<Product<LhsView, Rhs, DefaultProduct>, ProductTag, SparseSelfAdjointShape, SparseShape>
|
381
|
+
: public evaluator<typename Product<typename Rhs::PlainObject, Rhs, DefaultProduct>::PlainObject>
|
382
|
+
{
|
383
|
+
typedef Product<LhsView, Rhs, DefaultProduct> XprType;
|
384
|
+
typedef typename XprType::PlainObject PlainObject;
|
385
|
+
typedef evaluator<PlainObject> Base;
|
386
|
+
|
387
|
+
product_evaluator(const XprType& xpr)
|
388
|
+
: m_lhs(xpr.lhs()), m_result(xpr.rows(), xpr.cols())
|
389
|
+
{
|
390
|
+
::new (static_cast<Base*>(this)) Base(m_result);
|
391
|
+
generic_product_impl<typename Rhs::PlainObject, Rhs, SparseShape, SparseShape, ProductTag>::evalTo(m_result, m_lhs, xpr.rhs());
|
392
|
+
}
|
393
|
+
|
394
|
+
protected:
|
395
|
+
typename Rhs::PlainObject m_lhs;
|
396
|
+
PlainObject m_result;
|
397
|
+
};
|
398
|
+
|
399
|
+
template<typename Lhs, typename RhsView, int ProductTag>
|
400
|
+
struct product_evaluator<Product<Lhs, RhsView, DefaultProduct>, ProductTag, SparseShape, SparseSelfAdjointShape>
|
401
|
+
: public evaluator<typename Product<Lhs, typename Lhs::PlainObject, DefaultProduct>::PlainObject>
|
402
|
+
{
|
403
|
+
typedef Product<Lhs, RhsView, DefaultProduct> XprType;
|
404
|
+
typedef typename XprType::PlainObject PlainObject;
|
405
|
+
typedef evaluator<PlainObject> Base;
|
406
|
+
|
407
|
+
product_evaluator(const XprType& xpr)
|
408
|
+
: m_rhs(xpr.rhs()), m_result(xpr.rows(), xpr.cols())
|
409
|
+
{
|
410
|
+
::new (static_cast<Base*>(this)) Base(m_result);
|
411
|
+
generic_product_impl<Lhs, typename Lhs::PlainObject, SparseShape, SparseShape, ProductTag>::evalTo(m_result, xpr.lhs(), m_rhs);
|
412
|
+
}
|
413
|
+
|
414
|
+
protected:
|
415
|
+
typename Lhs::PlainObject m_rhs;
|
416
|
+
PlainObject m_result;
|
417
|
+
};
|
418
|
+
|
419
|
+
} // namespace internal
|
420
|
+
|
421
|
+
/***************************************************************************
|
422
|
+
* Implementation of symmetric copies and permutations
|
423
|
+
***************************************************************************/
|
424
|
+
namespace internal {
|
425
|
+
|
426
|
+
template<int Mode,typename MatrixType,int DestOrder>
|
427
|
+
void permute_symm_to_fullsymm(const MatrixType& mat, SparseMatrix<typename MatrixType::Scalar,DestOrder,typename MatrixType::StorageIndex>& _dest, const typename MatrixType::StorageIndex* perm)
|
428
|
+
{
|
429
|
+
typedef typename MatrixType::StorageIndex StorageIndex;
|
430
|
+
typedef typename MatrixType::Scalar Scalar;
|
431
|
+
typedef SparseMatrix<Scalar,DestOrder,StorageIndex> Dest;
|
432
|
+
typedef Matrix<StorageIndex,Dynamic,1> VectorI;
|
433
|
+
typedef evaluator<MatrixType> MatEval;
|
434
|
+
typedef typename evaluator<MatrixType>::InnerIterator MatIterator;
|
435
|
+
|
436
|
+
MatEval matEval(mat);
|
437
|
+
Dest& dest(_dest.derived());
|
438
|
+
enum {
|
439
|
+
StorageOrderMatch = int(Dest::IsRowMajor) == int(MatrixType::IsRowMajor)
|
440
|
+
};
|
441
|
+
|
442
|
+
Index size = mat.rows();
|
443
|
+
VectorI count;
|
444
|
+
count.resize(size);
|
445
|
+
count.setZero();
|
446
|
+
dest.resize(size,size);
|
447
|
+
for(Index j = 0; j<size; ++j)
|
448
|
+
{
|
449
|
+
Index jp = perm ? perm[j] : j;
|
450
|
+
for(MatIterator it(matEval,j); it; ++it)
|
451
|
+
{
|
452
|
+
Index i = it.index();
|
453
|
+
Index r = it.row();
|
454
|
+
Index c = it.col();
|
455
|
+
Index ip = perm ? perm[i] : i;
|
456
|
+
if(Mode==(Upper|Lower))
|
457
|
+
count[StorageOrderMatch ? jp : ip]++;
|
458
|
+
else if(r==c)
|
459
|
+
count[ip]++;
|
460
|
+
else if(( Mode==Lower && r>c) || ( Mode==Upper && r<c))
|
461
|
+
{
|
462
|
+
count[ip]++;
|
463
|
+
count[jp]++;
|
464
|
+
}
|
465
|
+
}
|
466
|
+
}
|
467
|
+
Index nnz = count.sum();
|
468
|
+
|
469
|
+
// reserve space
|
470
|
+
dest.resizeNonZeros(nnz);
|
471
|
+
dest.outerIndexPtr()[0] = 0;
|
472
|
+
for(Index j=0; j<size; ++j)
|
473
|
+
dest.outerIndexPtr()[j+1] = dest.outerIndexPtr()[j] + count[j];
|
474
|
+
for(Index j=0; j<size; ++j)
|
475
|
+
count[j] = dest.outerIndexPtr()[j];
|
476
|
+
|
477
|
+
// copy data
|
478
|
+
for(StorageIndex j = 0; j<size; ++j)
|
479
|
+
{
|
480
|
+
for(MatIterator it(matEval,j); it; ++it)
|
481
|
+
{
|
482
|
+
StorageIndex i = internal::convert_index<StorageIndex>(it.index());
|
483
|
+
Index r = it.row();
|
484
|
+
Index c = it.col();
|
485
|
+
|
486
|
+
StorageIndex jp = perm ? perm[j] : j;
|
487
|
+
StorageIndex ip = perm ? perm[i] : i;
|
488
|
+
|
489
|
+
if(Mode==(Upper|Lower))
|
490
|
+
{
|
491
|
+
Index k = count[StorageOrderMatch ? jp : ip]++;
|
492
|
+
dest.innerIndexPtr()[k] = StorageOrderMatch ? ip : jp;
|
493
|
+
dest.valuePtr()[k] = it.value();
|
494
|
+
}
|
495
|
+
else if(r==c)
|
496
|
+
{
|
497
|
+
Index k = count[ip]++;
|
498
|
+
dest.innerIndexPtr()[k] = ip;
|
499
|
+
dest.valuePtr()[k] = it.value();
|
500
|
+
}
|
501
|
+
else if(( (Mode&Lower)==Lower && r>c) || ( (Mode&Upper)==Upper && r<c))
|
502
|
+
{
|
503
|
+
if(!StorageOrderMatch)
|
504
|
+
std::swap(ip,jp);
|
505
|
+
Index k = count[jp]++;
|
506
|
+
dest.innerIndexPtr()[k] = ip;
|
507
|
+
dest.valuePtr()[k] = it.value();
|
508
|
+
k = count[ip]++;
|
509
|
+
dest.innerIndexPtr()[k] = jp;
|
510
|
+
dest.valuePtr()[k] = numext::conj(it.value());
|
511
|
+
}
|
512
|
+
}
|
513
|
+
}
|
514
|
+
}
|
515
|
+
|
516
|
+
template<int _SrcMode,int _DstMode,typename MatrixType,int DstOrder>
|
517
|
+
void permute_symm_to_symm(const MatrixType& mat, SparseMatrix<typename MatrixType::Scalar,DstOrder,typename MatrixType::StorageIndex>& _dest, const typename MatrixType::StorageIndex* perm)
|
518
|
+
{
|
519
|
+
typedef typename MatrixType::StorageIndex StorageIndex;
|
520
|
+
typedef typename MatrixType::Scalar Scalar;
|
521
|
+
SparseMatrix<Scalar,DstOrder,StorageIndex>& dest(_dest.derived());
|
522
|
+
typedef Matrix<StorageIndex,Dynamic,1> VectorI;
|
523
|
+
typedef evaluator<MatrixType> MatEval;
|
524
|
+
typedef typename evaluator<MatrixType>::InnerIterator MatIterator;
|
525
|
+
|
526
|
+
enum {
|
527
|
+
SrcOrder = MatrixType::IsRowMajor ? RowMajor : ColMajor,
|
528
|
+
StorageOrderMatch = int(SrcOrder) == int(DstOrder),
|
529
|
+
DstMode = DstOrder==RowMajor ? (_DstMode==Upper ? Lower : Upper) : _DstMode,
|
530
|
+
SrcMode = SrcOrder==RowMajor ? (_SrcMode==Upper ? Lower : Upper) : _SrcMode
|
531
|
+
};
|
532
|
+
|
533
|
+
MatEval matEval(mat);
|
534
|
+
|
535
|
+
Index size = mat.rows();
|
536
|
+
VectorI count(size);
|
537
|
+
count.setZero();
|
538
|
+
dest.resize(size,size);
|
539
|
+
for(StorageIndex j = 0; j<size; ++j)
|
540
|
+
{
|
541
|
+
StorageIndex jp = perm ? perm[j] : j;
|
542
|
+
for(MatIterator it(matEval,j); it; ++it)
|
543
|
+
{
|
544
|
+
StorageIndex i = it.index();
|
545
|
+
if((int(SrcMode)==int(Lower) && i<j) || (int(SrcMode)==int(Upper) && i>j))
|
546
|
+
continue;
|
547
|
+
|
548
|
+
StorageIndex ip = perm ? perm[i] : i;
|
549
|
+
count[int(DstMode)==int(Lower) ? (std::min)(ip,jp) : (std::max)(ip,jp)]++;
|
550
|
+
}
|
551
|
+
}
|
552
|
+
dest.outerIndexPtr()[0] = 0;
|
553
|
+
for(Index j=0; j<size; ++j)
|
554
|
+
dest.outerIndexPtr()[j+1] = dest.outerIndexPtr()[j] + count[j];
|
555
|
+
dest.resizeNonZeros(dest.outerIndexPtr()[size]);
|
556
|
+
for(Index j=0; j<size; ++j)
|
557
|
+
count[j] = dest.outerIndexPtr()[j];
|
558
|
+
|
559
|
+
for(StorageIndex j = 0; j<size; ++j)
|
560
|
+
{
|
561
|
+
|
562
|
+
for(MatIterator it(matEval,j); it; ++it)
|
563
|
+
{
|
564
|
+
StorageIndex i = it.index();
|
565
|
+
if((int(SrcMode)==int(Lower) && i<j) || (int(SrcMode)==int(Upper) && i>j))
|
566
|
+
continue;
|
567
|
+
|
568
|
+
StorageIndex jp = perm ? perm[j] : j;
|
569
|
+
StorageIndex ip = perm? perm[i] : i;
|
570
|
+
|
571
|
+
Index k = count[int(DstMode)==int(Lower) ? (std::min)(ip,jp) : (std::max)(ip,jp)]++;
|
572
|
+
dest.innerIndexPtr()[k] = int(DstMode)==int(Lower) ? (std::max)(ip,jp) : (std::min)(ip,jp);
|
573
|
+
|
574
|
+
if(!StorageOrderMatch) std::swap(ip,jp);
|
575
|
+
if( ((int(DstMode)==int(Lower) && ip<jp) || (int(DstMode)==int(Upper) && ip>jp)))
|
576
|
+
dest.valuePtr()[k] = numext::conj(it.value());
|
577
|
+
else
|
578
|
+
dest.valuePtr()[k] = it.value();
|
579
|
+
}
|
580
|
+
}
|
581
|
+
}
|
582
|
+
|
583
|
+
}
|
584
|
+
|
585
|
+
// TODO implement twists in a more evaluator friendly fashion
|
586
|
+
|
587
|
+
namespace internal {
|
588
|
+
|
589
|
+
template<typename MatrixType, int Mode>
|
590
|
+
struct traits<SparseSymmetricPermutationProduct<MatrixType,Mode> > : traits<MatrixType> {
|
591
|
+
};
|
592
|
+
|
593
|
+
}
|
594
|
+
|
595
|
+
template<typename MatrixType,int Mode>
|
596
|
+
class SparseSymmetricPermutationProduct
|
597
|
+
: public EigenBase<SparseSymmetricPermutationProduct<MatrixType,Mode> >
|
598
|
+
{
|
599
|
+
public:
|
600
|
+
typedef typename MatrixType::Scalar Scalar;
|
601
|
+
typedef typename MatrixType::StorageIndex StorageIndex;
|
602
|
+
enum {
|
603
|
+
RowsAtCompileTime = internal::traits<SparseSymmetricPermutationProduct>::RowsAtCompileTime,
|
604
|
+
ColsAtCompileTime = internal::traits<SparseSymmetricPermutationProduct>::ColsAtCompileTime
|
605
|
+
};
|
606
|
+
protected:
|
607
|
+
typedef PermutationMatrix<Dynamic,Dynamic,StorageIndex> Perm;
|
608
|
+
public:
|
609
|
+
typedef Matrix<StorageIndex,Dynamic,1> VectorI;
|
610
|
+
typedef typename MatrixType::Nested MatrixTypeNested;
|
611
|
+
typedef typename internal::remove_all<MatrixTypeNested>::type NestedExpression;
|
612
|
+
|
613
|
+
SparseSymmetricPermutationProduct(const MatrixType& mat, const Perm& perm)
|
614
|
+
: m_matrix(mat), m_perm(perm)
|
615
|
+
{}
|
616
|
+
|
617
|
+
inline Index rows() const { return m_matrix.rows(); }
|
618
|
+
inline Index cols() const { return m_matrix.cols(); }
|
619
|
+
|
620
|
+
const NestedExpression& matrix() const { return m_matrix; }
|
621
|
+
const Perm& perm() const { return m_perm; }
|
622
|
+
|
623
|
+
protected:
|
624
|
+
MatrixTypeNested m_matrix;
|
625
|
+
const Perm& m_perm;
|
626
|
+
|
627
|
+
};
|
628
|
+
|
629
|
+
namespace internal {
|
630
|
+
|
631
|
+
template<typename DstXprType, typename MatrixType, int Mode, typename Scalar>
|
632
|
+
struct Assignment<DstXprType, SparseSymmetricPermutationProduct<MatrixType,Mode>, internal::assign_op<Scalar,typename MatrixType::Scalar>, Sparse2Sparse>
|
633
|
+
{
|
634
|
+
typedef SparseSymmetricPermutationProduct<MatrixType,Mode> SrcXprType;
|
635
|
+
typedef typename DstXprType::StorageIndex DstIndex;
|
636
|
+
template<int Options>
|
637
|
+
static void run(SparseMatrix<Scalar,Options,DstIndex> &dst, const SrcXprType &src, const internal::assign_op<Scalar,typename MatrixType::Scalar> &)
|
638
|
+
{
|
639
|
+
// internal::permute_symm_to_fullsymm<Mode>(m_matrix,_dest,m_perm.indices().data());
|
640
|
+
SparseMatrix<Scalar,(Options&RowMajor)==RowMajor ? ColMajor : RowMajor, DstIndex> tmp;
|
641
|
+
internal::permute_symm_to_fullsymm<Mode>(src.matrix(),tmp,src.perm().indices().data());
|
642
|
+
dst = tmp;
|
643
|
+
}
|
644
|
+
|
645
|
+
template<typename DestType,unsigned int DestMode>
|
646
|
+
static void run(SparseSelfAdjointView<DestType,DestMode>& dst, const SrcXprType &src, const internal::assign_op<Scalar,typename MatrixType::Scalar> &)
|
647
|
+
{
|
648
|
+
internal::permute_symm_to_symm<Mode,DestMode>(src.matrix(),dst.matrix(),src.perm().indices().data());
|
649
|
+
}
|
650
|
+
};
|
651
|
+
|
652
|
+
} // end namespace internal
|
653
|
+
|
654
|
+
} // end namespace Eigen
|
655
|
+
|
656
|
+
#endif // EIGEN_SPARSE_SELFADJOINTVIEW_H
|