tomoto 0.1.0

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Files changed (420) hide show
  1. checksums.yaml +7 -0
  2. data/CHANGELOG.md +3 -0
  3. data/LICENSE.txt +22 -0
  4. data/README.md +123 -0
  5. data/ext/tomoto/ext.cpp +245 -0
  6. data/ext/tomoto/extconf.rb +28 -0
  7. data/lib/tomoto.rb +12 -0
  8. data/lib/tomoto/ct.rb +11 -0
  9. data/lib/tomoto/hdp.rb +11 -0
  10. data/lib/tomoto/lda.rb +67 -0
  11. data/lib/tomoto/version.rb +3 -0
  12. data/vendor/EigenRand/EigenRand/Core.h +1139 -0
  13. data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
  14. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
  15. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
  16. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
  17. data/vendor/EigenRand/EigenRand/EigenRand +19 -0
  18. data/vendor/EigenRand/EigenRand/Macro.h +24 -0
  19. data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
  20. data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
  21. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
  22. data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
  23. data/vendor/EigenRand/EigenRand/doc.h +220 -0
  24. data/vendor/EigenRand/LICENSE +21 -0
  25. data/vendor/EigenRand/README.md +288 -0
  26. data/vendor/eigen/COPYING.BSD +26 -0
  27. data/vendor/eigen/COPYING.GPL +674 -0
  28. data/vendor/eigen/COPYING.LGPL +502 -0
  29. data/vendor/eigen/COPYING.MINPACK +52 -0
  30. data/vendor/eigen/COPYING.MPL2 +373 -0
  31. data/vendor/eigen/COPYING.README +18 -0
  32. data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
  33. data/vendor/eigen/Eigen/Cholesky +46 -0
  34. data/vendor/eigen/Eigen/CholmodSupport +48 -0
  35. data/vendor/eigen/Eigen/Core +537 -0
  36. data/vendor/eigen/Eigen/Dense +7 -0
  37. data/vendor/eigen/Eigen/Eigen +2 -0
  38. data/vendor/eigen/Eigen/Eigenvalues +61 -0
  39. data/vendor/eigen/Eigen/Geometry +62 -0
  40. data/vendor/eigen/Eigen/Householder +30 -0
  41. data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
  42. data/vendor/eigen/Eigen/Jacobi +33 -0
  43. data/vendor/eigen/Eigen/LU +50 -0
  44. data/vendor/eigen/Eigen/MetisSupport +35 -0
  45. data/vendor/eigen/Eigen/OrderingMethods +73 -0
  46. data/vendor/eigen/Eigen/PaStiXSupport +48 -0
  47. data/vendor/eigen/Eigen/PardisoSupport +35 -0
  48. data/vendor/eigen/Eigen/QR +51 -0
  49. data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
  50. data/vendor/eigen/Eigen/SPQRSupport +34 -0
  51. data/vendor/eigen/Eigen/SVD +51 -0
  52. data/vendor/eigen/Eigen/Sparse +36 -0
  53. data/vendor/eigen/Eigen/SparseCholesky +45 -0
  54. data/vendor/eigen/Eigen/SparseCore +69 -0
  55. data/vendor/eigen/Eigen/SparseLU +46 -0
  56. data/vendor/eigen/Eigen/SparseQR +37 -0
  57. data/vendor/eigen/Eigen/StdDeque +27 -0
  58. data/vendor/eigen/Eigen/StdList +26 -0
  59. data/vendor/eigen/Eigen/StdVector +27 -0
  60. data/vendor/eigen/Eigen/SuperLUSupport +64 -0
  61. data/vendor/eigen/Eigen/UmfPackSupport +40 -0
  62. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
  63. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
  64. data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  65. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
  66. data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
  67. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
  68. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
  69. data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
  70. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
  71. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
  72. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
  73. data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
  74. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
  75. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
  76. data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
  77. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
  78. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
  79. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
  80. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
  81. data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  82. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
  84. data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
  85. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
  86. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
  87. data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
  88. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
  89. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
  90. data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
  91. data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
  92. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  93. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
  94. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
  95. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
  96. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
  97. data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
  98. data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
  99. data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
  100. data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
  101. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
  102. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
  103. data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
  104. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
  105. data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
  106. data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
  107. data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
  108. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
  109. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
  110. data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
  111. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
  112. data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
  113. data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
  114. data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
  115. data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
  116. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
  117. data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
  118. data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
  119. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
  120. data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  121. data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
  122. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
  123. data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
  124. data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
  125. data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
  126. data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
  127. data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
  128. data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
  129. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
  130. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
  131. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
  132. data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
  133. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
  134. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
  135. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
  136. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
  137. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
  138. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
  139. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
  140. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
  141. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
  142. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
  143. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
  145. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
  146. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
  148. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
  149. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
  153. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
  154. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
  156. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
  160. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
  161. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
  162. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
  163. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
  164. data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  165. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
  166. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
  167. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
  168. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
  169. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  170. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
  171. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
  172. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  173. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
  174. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
  175. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
  176. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
  177. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  178. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  179. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  180. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
  181. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
  182. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  183. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  184. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
  185. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
  186. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
  187. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
  188. data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
  189. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
  190. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  191. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
  192. data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
  193. data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
  194. data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
  195. data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
  196. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
  197. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
  198. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
  199. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  200. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
  201. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  202. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  203. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  204. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  205. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  206. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  207. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
  208. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
  209. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  210. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
  211. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  212. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
  213. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
  214. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
  215. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
  216. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
  217. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
  218. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
  219. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  220. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
  221. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
  222. data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
  223. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
  224. data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
  225. data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
  226. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
  227. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
  228. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
  229. data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
  230. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
  231. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  232. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
  233. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
  234. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
  235. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
  236. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
  237. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
  238. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
  239. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
  240. data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
  241. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
  242. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
  243. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
  244. data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  245. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
  246. data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  247. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
  248. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
  249. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
  250. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  251. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
  252. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
  253. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  254. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
  255. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
  256. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
  257. data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  258. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
  259. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
  260. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
  261. data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  262. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
  263. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  264. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
  265. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  266. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
  267. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
  268. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  269. data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  270. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
  271. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
  272. data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  273. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
  274. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
  275. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
  276. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
  277. data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  278. data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
  279. data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  280. data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
  281. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
  282. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
  283. data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  284. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
  285. data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
  295. data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  296. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
  297. data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  298. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  299. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  300. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  307. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  308. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  309. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  310. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  311. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  312. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  313. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
  314. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +126 -0
  315. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
  316. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
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  318. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
  319. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
  320. data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
  321. data/vendor/eigen/Eigen/src/misc/Kernel.h +79 -0
  322. data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
  323. data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
  324. data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
  325. data/vendor/eigen/Eigen/src/misc/lapacke.h +16291 -0
  326. data/vendor/eigen/Eigen/src/misc/lapacke_mangling.h +17 -0
  327. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +332 -0
  328. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
  329. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
  330. data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
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  332. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  333. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
  334. data/vendor/eigen/README.md +3 -0
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  336. data/vendor/eigen/bench/btl/COPYING +340 -0
  337. data/vendor/eigen/bench/btl/README +154 -0
  338. data/vendor/eigen/bench/tensors/README +21 -0
  339. data/vendor/eigen/blas/README.txt +6 -0
  340. data/vendor/eigen/demos/mandelbrot/README +10 -0
  341. data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
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  344. data/vendor/eigen/unsupported/README.txt +50 -0
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  346. data/vendor/tomotopy/README.kr.rst +375 -0
  347. data/vendor/tomotopy/README.rst +382 -0
  348. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
  349. data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
  350. data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
  351. data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
  352. data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
  353. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
  354. data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
  355. data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
  356. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
  357. data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
  358. data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
  359. data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
  360. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
  361. data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
  362. data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
  363. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
  364. data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
  365. data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
  366. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
  367. data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
  368. data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
  369. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
  370. data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
  371. data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
  372. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
  373. data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
  374. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
  375. data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
  376. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
  377. data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
  378. data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
  379. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
  380. data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
  381. data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
  382. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
  383. data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
  384. data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
  385. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
  386. data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
  387. data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
  388. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
  389. data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
  390. data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
  391. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
  392. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
  393. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +169 -0
  394. data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
  395. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
  396. data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
  397. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
  398. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
  399. data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
  400. data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
  401. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
  402. data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
  403. data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
  404. data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
  405. data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
  406. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
  407. data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
  408. data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
  409. data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
  410. data/vendor/tomotopy/src/Utils/exception.h +28 -0
  411. data/vendor/tomotopy/src/Utils/math.h +281 -0
  412. data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
  413. data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
  414. data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
  415. data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
  416. data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
  417. data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
  418. data/vendor/tomotopy/src/Utils/text.hpp +49 -0
  419. data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
  420. metadata +531 -0
@@ -0,0 +1,405 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008-2014 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_SPARSEMATRIXBASE_H
11
+ #define EIGEN_SPARSEMATRIXBASE_H
12
+
13
+ namespace Eigen {
14
+
15
+ /** \ingroup SparseCore_Module
16
+ *
17
+ * \class SparseMatrixBase
18
+ *
19
+ * \brief Base class of any sparse matrices or sparse expressions
20
+ *
21
+ * \tparam Derived is the derived type, e.g. a sparse matrix type, or an expression, etc.
22
+ *
23
+ * This class can be extended with the help of the plugin mechanism described on the page
24
+ * \ref TopicCustomizing_Plugins by defining the preprocessor symbol \c EIGEN_SPARSEMATRIXBASE_PLUGIN.
25
+ */
26
+ template<typename Derived> class SparseMatrixBase
27
+ : public EigenBase<Derived>
28
+ {
29
+ public:
30
+
31
+ typedef typename internal::traits<Derived>::Scalar Scalar;
32
+
33
+ /** The numeric type of the expression' coefficients, e.g. float, double, int or std::complex<float>, etc.
34
+ *
35
+ * It is an alias for the Scalar type */
36
+ typedef Scalar value_type;
37
+
38
+ typedef typename internal::packet_traits<Scalar>::type PacketScalar;
39
+ typedef typename internal::traits<Derived>::StorageKind StorageKind;
40
+
41
+ /** The integer type used to \b store indices within a SparseMatrix.
42
+ * For a \c SparseMatrix<Scalar,Options,IndexType> it an alias of the third template parameter \c IndexType. */
43
+ typedef typename internal::traits<Derived>::StorageIndex StorageIndex;
44
+
45
+ typedef typename internal::add_const_on_value_type_if_arithmetic<
46
+ typename internal::packet_traits<Scalar>::type
47
+ >::type PacketReturnType;
48
+
49
+ typedef SparseMatrixBase StorageBaseType;
50
+
51
+ typedef Matrix<StorageIndex,Dynamic,1> IndexVector;
52
+ typedef Matrix<Scalar,Dynamic,1> ScalarVector;
53
+
54
+ template<typename OtherDerived>
55
+ Derived& operator=(const EigenBase<OtherDerived> &other);
56
+
57
+ enum {
58
+
59
+ RowsAtCompileTime = internal::traits<Derived>::RowsAtCompileTime,
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+ /**< The number of rows at compile-time. This is just a copy of the value provided
61
+ * by the \a Derived type. If a value is not known at compile-time,
62
+ * it is set to the \a Dynamic constant.
63
+ * \sa MatrixBase::rows(), MatrixBase::cols(), ColsAtCompileTime, SizeAtCompileTime */
64
+
65
+ ColsAtCompileTime = internal::traits<Derived>::ColsAtCompileTime,
66
+ /**< The number of columns at compile-time. This is just a copy of the value provided
67
+ * by the \a Derived type. If a value is not known at compile-time,
68
+ * it is set to the \a Dynamic constant.
69
+ * \sa MatrixBase::rows(), MatrixBase::cols(), RowsAtCompileTime, SizeAtCompileTime */
70
+
71
+
72
+ SizeAtCompileTime = (internal::size_at_compile_time<internal::traits<Derived>::RowsAtCompileTime,
73
+ internal::traits<Derived>::ColsAtCompileTime>::ret),
74
+ /**< This is equal to the number of coefficients, i.e. the number of
75
+ * rows times the number of columns, or to \a Dynamic if this is not
76
+ * known at compile-time. \sa RowsAtCompileTime, ColsAtCompileTime */
77
+
78
+ MaxRowsAtCompileTime = RowsAtCompileTime,
79
+ MaxColsAtCompileTime = ColsAtCompileTime,
80
+
81
+ MaxSizeAtCompileTime = (internal::size_at_compile_time<MaxRowsAtCompileTime,
82
+ MaxColsAtCompileTime>::ret),
83
+
84
+ IsVectorAtCompileTime = RowsAtCompileTime == 1 || ColsAtCompileTime == 1,
85
+ /**< This is set to true if either the number of rows or the number of
86
+ * columns is known at compile-time to be equal to 1. Indeed, in that case,
87
+ * we are dealing with a column-vector (if there is only one column) or with
88
+ * a row-vector (if there is only one row). */
89
+
90
+ Flags = internal::traits<Derived>::Flags,
91
+ /**< This stores expression \ref flags flags which may or may not be inherited by new expressions
92
+ * constructed from this one. See the \ref flags "list of flags".
93
+ */
94
+
95
+ IsRowMajor = Flags&RowMajorBit ? 1 : 0,
96
+
97
+ InnerSizeAtCompileTime = int(IsVectorAtCompileTime) ? int(SizeAtCompileTime)
98
+ : int(IsRowMajor) ? int(ColsAtCompileTime) : int(RowsAtCompileTime),
99
+
100
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
101
+ _HasDirectAccess = (int(Flags)&DirectAccessBit) ? 1 : 0 // workaround sunCC
102
+ #endif
103
+ };
104
+
105
+ /** \internal the return type of MatrixBase::adjoint() */
106
+ typedef typename internal::conditional<NumTraits<Scalar>::IsComplex,
107
+ CwiseUnaryOp<internal::scalar_conjugate_op<Scalar>, Eigen::Transpose<const Derived> >,
108
+ Transpose<const Derived>
109
+ >::type AdjointReturnType;
110
+ typedef Transpose<Derived> TransposeReturnType;
111
+ typedef typename internal::add_const<Transpose<const Derived> >::type ConstTransposeReturnType;
112
+
113
+ // FIXME storage order do not match evaluator storage order
114
+ typedef SparseMatrix<Scalar, Flags&RowMajorBit ? RowMajor : ColMajor, StorageIndex> PlainObject;
115
+
116
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
117
+ /** This is the "real scalar" type; if the \a Scalar type is already real numbers
118
+ * (e.g. int, float or double) then \a RealScalar is just the same as \a Scalar. If
119
+ * \a Scalar is \a std::complex<T> then RealScalar is \a T.
120
+ *
121
+ * \sa class NumTraits
122
+ */
123
+ typedef typename NumTraits<Scalar>::Real RealScalar;
124
+
125
+ /** \internal the return type of coeff()
126
+ */
127
+ typedef typename internal::conditional<_HasDirectAccess, const Scalar&, Scalar>::type CoeffReturnType;
128
+
129
+ /** \internal Represents a matrix with all coefficients equal to one another*/
130
+ typedef CwiseNullaryOp<internal::scalar_constant_op<Scalar>,Matrix<Scalar,Dynamic,Dynamic> > ConstantReturnType;
131
+
132
+ /** type of the equivalent dense matrix */
133
+ typedef Matrix<Scalar,RowsAtCompileTime,ColsAtCompileTime> DenseMatrixType;
134
+ /** type of the equivalent square matrix */
135
+ typedef Matrix<Scalar,EIGEN_SIZE_MAX(RowsAtCompileTime,ColsAtCompileTime),
136
+ EIGEN_SIZE_MAX(RowsAtCompileTime,ColsAtCompileTime)> SquareMatrixType;
137
+
138
+ inline const Derived& derived() const { return *static_cast<const Derived*>(this); }
139
+ inline Derived& derived() { return *static_cast<Derived*>(this); }
140
+ inline Derived& const_cast_derived() const
141
+ { return *static_cast<Derived*>(const_cast<SparseMatrixBase*>(this)); }
142
+
143
+ typedef EigenBase<Derived> Base;
144
+
145
+ #endif // not EIGEN_PARSED_BY_DOXYGEN
146
+
147
+ #define EIGEN_CURRENT_STORAGE_BASE_CLASS Eigen::SparseMatrixBase
148
+ #ifdef EIGEN_PARSED_BY_DOXYGEN
149
+ #define EIGEN_DOC_UNARY_ADDONS(METHOD,OP) /** <p>This method does not change the sparsity of \c *this: the OP is applied to explicitly stored coefficients only. \sa SparseCompressedBase::coeffs() </p> */
150
+ #define EIGEN_DOC_BLOCK_ADDONS_NOT_INNER_PANEL /** <p> \warning This method returns a read-only expression for any sparse matrices. \sa \ref TutorialSparse_SubMatrices "Sparse block operations" </p> */
151
+ #define EIGEN_DOC_BLOCK_ADDONS_INNER_PANEL_IF(COND) /** <p> \warning This method returns a read-write expression for COND sparse matrices only. Otherwise, the returned expression is read-only. \sa \ref TutorialSparse_SubMatrices "Sparse block operations" </p> */
152
+ #else
153
+ #define EIGEN_DOC_UNARY_ADDONS(X,Y)
154
+ #define EIGEN_DOC_BLOCK_ADDONS_NOT_INNER_PANEL
155
+ #define EIGEN_DOC_BLOCK_ADDONS_INNER_PANEL_IF(COND)
156
+ #endif
157
+ # include "../plugins/CommonCwiseUnaryOps.h"
158
+ # include "../plugins/CommonCwiseBinaryOps.h"
159
+ # include "../plugins/MatrixCwiseUnaryOps.h"
160
+ # include "../plugins/MatrixCwiseBinaryOps.h"
161
+ # include "../plugins/BlockMethods.h"
162
+ # ifdef EIGEN_SPARSEMATRIXBASE_PLUGIN
163
+ # include EIGEN_SPARSEMATRIXBASE_PLUGIN
164
+ # endif
165
+ #undef EIGEN_CURRENT_STORAGE_BASE_CLASS
166
+ #undef EIGEN_DOC_UNARY_ADDONS
167
+ #undef EIGEN_DOC_BLOCK_ADDONS_NOT_INNER_PANEL
168
+ #undef EIGEN_DOC_BLOCK_ADDONS_INNER_PANEL_IF
169
+
170
+ /** \returns the number of rows. \sa cols() */
171
+ inline Index rows() const { return derived().rows(); }
172
+ /** \returns the number of columns. \sa rows() */
173
+ inline Index cols() const { return derived().cols(); }
174
+ /** \returns the number of coefficients, which is \a rows()*cols().
175
+ * \sa rows(), cols(). */
176
+ inline Index size() const { return rows() * cols(); }
177
+ /** \returns true if either the number of rows or the number of columns is equal to 1.
178
+ * In other words, this function returns
179
+ * \code rows()==1 || cols()==1 \endcode
180
+ * \sa rows(), cols(), IsVectorAtCompileTime. */
181
+ inline bool isVector() const { return rows()==1 || cols()==1; }
182
+ /** \returns the size of the storage major dimension,
183
+ * i.e., the number of columns for a columns major matrix, and the number of rows otherwise */
184
+ Index outerSize() const { return (int(Flags)&RowMajorBit) ? this->rows() : this->cols(); }
185
+ /** \returns the size of the inner dimension according to the storage order,
186
+ * i.e., the number of rows for a columns major matrix, and the number of cols otherwise */
187
+ Index innerSize() const { return (int(Flags)&RowMajorBit) ? this->cols() : this->rows(); }
188
+
189
+ bool isRValue() const { return m_isRValue; }
190
+ Derived& markAsRValue() { m_isRValue = true; return derived(); }
191
+
192
+ SparseMatrixBase() : m_isRValue(false) { /* TODO check flags */ }
193
+
194
+
195
+ template<typename OtherDerived>
196
+ Derived& operator=(const ReturnByValue<OtherDerived>& other);
197
+
198
+ template<typename OtherDerived>
199
+ inline Derived& operator=(const SparseMatrixBase<OtherDerived>& other);
200
+
201
+ inline Derived& operator=(const Derived& other);
202
+
203
+ protected:
204
+
205
+ template<typename OtherDerived>
206
+ inline Derived& assign(const OtherDerived& other);
207
+
208
+ template<typename OtherDerived>
209
+ inline void assignGeneric(const OtherDerived& other);
210
+
211
+ public:
212
+
213
+ friend std::ostream & operator << (std::ostream & s, const SparseMatrixBase& m)
214
+ {
215
+ typedef typename Derived::Nested Nested;
216
+ typedef typename internal::remove_all<Nested>::type NestedCleaned;
217
+
218
+ if (Flags&RowMajorBit)
219
+ {
220
+ Nested nm(m.derived());
221
+ internal::evaluator<NestedCleaned> thisEval(nm);
222
+ for (Index row=0; row<nm.outerSize(); ++row)
223
+ {
224
+ Index col = 0;
225
+ for (typename internal::evaluator<NestedCleaned>::InnerIterator it(thisEval, row); it; ++it)
226
+ {
227
+ for ( ; col<it.index(); ++col)
228
+ s << "0 ";
229
+ s << it.value() << " ";
230
+ ++col;
231
+ }
232
+ for ( ; col<m.cols(); ++col)
233
+ s << "0 ";
234
+ s << std::endl;
235
+ }
236
+ }
237
+ else
238
+ {
239
+ Nested nm(m.derived());
240
+ internal::evaluator<NestedCleaned> thisEval(nm);
241
+ if (m.cols() == 1) {
242
+ Index row = 0;
243
+ for (typename internal::evaluator<NestedCleaned>::InnerIterator it(thisEval, 0); it; ++it)
244
+ {
245
+ for ( ; row<it.index(); ++row)
246
+ s << "0" << std::endl;
247
+ s << it.value() << std::endl;
248
+ ++row;
249
+ }
250
+ for ( ; row<m.rows(); ++row)
251
+ s << "0" << std::endl;
252
+ }
253
+ else
254
+ {
255
+ SparseMatrix<Scalar, RowMajorBit, StorageIndex> trans = m;
256
+ s << static_cast<const SparseMatrixBase<SparseMatrix<Scalar, RowMajorBit, StorageIndex> >&>(trans);
257
+ }
258
+ }
259
+ return s;
260
+ }
261
+
262
+ template<typename OtherDerived>
263
+ Derived& operator+=(const SparseMatrixBase<OtherDerived>& other);
264
+ template<typename OtherDerived>
265
+ Derived& operator-=(const SparseMatrixBase<OtherDerived>& other);
266
+
267
+ template<typename OtherDerived>
268
+ Derived& operator+=(const DiagonalBase<OtherDerived>& other);
269
+ template<typename OtherDerived>
270
+ Derived& operator-=(const DiagonalBase<OtherDerived>& other);
271
+
272
+ template<typename OtherDerived>
273
+ Derived& operator+=(const EigenBase<OtherDerived> &other);
274
+ template<typename OtherDerived>
275
+ Derived& operator-=(const EigenBase<OtherDerived> &other);
276
+
277
+ Derived& operator*=(const Scalar& other);
278
+ Derived& operator/=(const Scalar& other);
279
+
280
+ template<typename OtherDerived> struct CwiseProductDenseReturnType {
281
+ typedef CwiseBinaryOp<internal::scalar_product_op<typename ScalarBinaryOpTraits<
282
+ typename internal::traits<Derived>::Scalar,
283
+ typename internal::traits<OtherDerived>::Scalar
284
+ >::ReturnType>,
285
+ const Derived,
286
+ const OtherDerived
287
+ > Type;
288
+ };
289
+
290
+ template<typename OtherDerived>
291
+ EIGEN_STRONG_INLINE const typename CwiseProductDenseReturnType<OtherDerived>::Type
292
+ cwiseProduct(const MatrixBase<OtherDerived> &other) const;
293
+
294
+ // sparse * diagonal
295
+ template<typename OtherDerived>
296
+ const Product<Derived,OtherDerived>
297
+ operator*(const DiagonalBase<OtherDerived> &other) const
298
+ { return Product<Derived,OtherDerived>(derived(), other.derived()); }
299
+
300
+ // diagonal * sparse
301
+ template<typename OtherDerived> friend
302
+ const Product<OtherDerived,Derived>
303
+ operator*(const DiagonalBase<OtherDerived> &lhs, const SparseMatrixBase& rhs)
304
+ { return Product<OtherDerived,Derived>(lhs.derived(), rhs.derived()); }
305
+
306
+ // sparse * sparse
307
+ template<typename OtherDerived>
308
+ const Product<Derived,OtherDerived,AliasFreeProduct>
309
+ operator*(const SparseMatrixBase<OtherDerived> &other) const;
310
+
311
+ // sparse * dense
312
+ template<typename OtherDerived>
313
+ const Product<Derived,OtherDerived>
314
+ operator*(const MatrixBase<OtherDerived> &other) const
315
+ { return Product<Derived,OtherDerived>(derived(), other.derived()); }
316
+
317
+ // dense * sparse
318
+ template<typename OtherDerived> friend
319
+ const Product<OtherDerived,Derived>
320
+ operator*(const MatrixBase<OtherDerived> &lhs, const SparseMatrixBase& rhs)
321
+ { return Product<OtherDerived,Derived>(lhs.derived(), rhs.derived()); }
322
+
323
+ /** \returns an expression of P H P^-1 where H is the matrix represented by \c *this */
324
+ SparseSymmetricPermutationProduct<Derived,Upper|Lower> twistedBy(const PermutationMatrix<Dynamic,Dynamic,StorageIndex>& perm) const
325
+ {
326
+ return SparseSymmetricPermutationProduct<Derived,Upper|Lower>(derived(), perm);
327
+ }
328
+
329
+ template<typename OtherDerived>
330
+ Derived& operator*=(const SparseMatrixBase<OtherDerived>& other);
331
+
332
+ template<int Mode>
333
+ inline const TriangularView<const Derived, Mode> triangularView() const;
334
+
335
+ template<unsigned int UpLo> struct SelfAdjointViewReturnType { typedef SparseSelfAdjointView<Derived, UpLo> Type; };
336
+ template<unsigned int UpLo> struct ConstSelfAdjointViewReturnType { typedef const SparseSelfAdjointView<const Derived, UpLo> Type; };
337
+
338
+ template<unsigned int UpLo> inline
339
+ typename ConstSelfAdjointViewReturnType<UpLo>::Type selfadjointView() const;
340
+ template<unsigned int UpLo> inline
341
+ typename SelfAdjointViewReturnType<UpLo>::Type selfadjointView();
342
+
343
+ template<typename OtherDerived> Scalar dot(const MatrixBase<OtherDerived>& other) const;
344
+ template<typename OtherDerived> Scalar dot(const SparseMatrixBase<OtherDerived>& other) const;
345
+ RealScalar squaredNorm() const;
346
+ RealScalar norm() const;
347
+ RealScalar blueNorm() const;
348
+
349
+ TransposeReturnType transpose() { return TransposeReturnType(derived()); }
350
+ const ConstTransposeReturnType transpose() const { return ConstTransposeReturnType(derived()); }
351
+ const AdjointReturnType adjoint() const { return AdjointReturnType(transpose()); }
352
+
353
+ // inner-vector
354
+ typedef Block<Derived,IsRowMajor?1:Dynamic,IsRowMajor?Dynamic:1,true> InnerVectorReturnType;
355
+ typedef Block<const Derived,IsRowMajor?1:Dynamic,IsRowMajor?Dynamic:1,true> ConstInnerVectorReturnType;
356
+ InnerVectorReturnType innerVector(Index outer);
357
+ const ConstInnerVectorReturnType innerVector(Index outer) const;
358
+
359
+ // set of inner-vectors
360
+ typedef Block<Derived,Dynamic,Dynamic,true> InnerVectorsReturnType;
361
+ typedef Block<const Derived,Dynamic,Dynamic,true> ConstInnerVectorsReturnType;
362
+ InnerVectorsReturnType innerVectors(Index outerStart, Index outerSize);
363
+ const ConstInnerVectorsReturnType innerVectors(Index outerStart, Index outerSize) const;
364
+
365
+ DenseMatrixType toDense() const
366
+ {
367
+ return DenseMatrixType(derived());
368
+ }
369
+
370
+ template<typename OtherDerived>
371
+ bool isApprox(const SparseMatrixBase<OtherDerived>& other,
372
+ const RealScalar& prec = NumTraits<Scalar>::dummy_precision()) const;
373
+
374
+ template<typename OtherDerived>
375
+ bool isApprox(const MatrixBase<OtherDerived>& other,
376
+ const RealScalar& prec = NumTraits<Scalar>::dummy_precision()) const
377
+ { return toDense().isApprox(other,prec); }
378
+
379
+ /** \returns the matrix or vector obtained by evaluating this expression.
380
+ *
381
+ * Notice that in the case of a plain matrix or vector (not an expression) this function just returns
382
+ * a const reference, in order to avoid a useless copy.
383
+ */
384
+ inline const typename internal::eval<Derived>::type eval() const
385
+ { return typename internal::eval<Derived>::type(derived()); }
386
+
387
+ Scalar sum() const;
388
+
389
+ inline const SparseView<Derived>
390
+ pruned(const Scalar& reference = Scalar(0), const RealScalar& epsilon = NumTraits<Scalar>::dummy_precision()) const;
391
+
392
+ protected:
393
+
394
+ bool m_isRValue;
395
+
396
+ static inline StorageIndex convert_index(const Index idx) {
397
+ return internal::convert_index<StorageIndex>(idx);
398
+ }
399
+ private:
400
+ template<typename Dest> void evalTo(Dest &) const;
401
+ };
402
+
403
+ } // end namespace Eigen
404
+
405
+ #endif // EIGEN_SPARSEMATRIXBASE_H
@@ -0,0 +1,178 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2012 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_SPARSE_PERMUTATION_H
11
+ #define EIGEN_SPARSE_PERMUTATION_H
12
+
13
+ // This file implements sparse * permutation products
14
+
15
+ namespace Eigen {
16
+
17
+ namespace internal {
18
+
19
+ template<typename ExpressionType, int Side, bool Transposed>
20
+ struct permutation_matrix_product<ExpressionType, Side, Transposed, SparseShape>
21
+ {
22
+ typedef typename nested_eval<ExpressionType, 1>::type MatrixType;
23
+ typedef typename remove_all<MatrixType>::type MatrixTypeCleaned;
24
+
25
+ typedef typename MatrixTypeCleaned::Scalar Scalar;
26
+ typedef typename MatrixTypeCleaned::StorageIndex StorageIndex;
27
+
28
+ enum {
29
+ SrcStorageOrder = MatrixTypeCleaned::Flags&RowMajorBit ? RowMajor : ColMajor,
30
+ MoveOuter = SrcStorageOrder==RowMajor ? Side==OnTheLeft : Side==OnTheRight
31
+ };
32
+
33
+ typedef typename internal::conditional<MoveOuter,
34
+ SparseMatrix<Scalar,SrcStorageOrder,StorageIndex>,
35
+ SparseMatrix<Scalar,int(SrcStorageOrder)==RowMajor?ColMajor:RowMajor,StorageIndex> >::type ReturnType;
36
+
37
+ template<typename Dest,typename PermutationType>
38
+ static inline void run(Dest& dst, const PermutationType& perm, const ExpressionType& xpr)
39
+ {
40
+ MatrixType mat(xpr);
41
+ if(MoveOuter)
42
+ {
43
+ SparseMatrix<Scalar,SrcStorageOrder,StorageIndex> tmp(mat.rows(), mat.cols());
44
+ Matrix<StorageIndex,Dynamic,1> sizes(mat.outerSize());
45
+ for(Index j=0; j<mat.outerSize(); ++j)
46
+ {
47
+ Index jp = perm.indices().coeff(j);
48
+ sizes[((Side==OnTheLeft) ^ Transposed) ? jp : j] = StorageIndex(mat.innerVector(((Side==OnTheRight) ^ Transposed) ? jp : j).nonZeros());
49
+ }
50
+ tmp.reserve(sizes);
51
+ for(Index j=0; j<mat.outerSize(); ++j)
52
+ {
53
+ Index jp = perm.indices().coeff(j);
54
+ Index jsrc = ((Side==OnTheRight) ^ Transposed) ? jp : j;
55
+ Index jdst = ((Side==OnTheLeft) ^ Transposed) ? jp : j;
56
+ for(typename MatrixTypeCleaned::InnerIterator it(mat,jsrc); it; ++it)
57
+ tmp.insertByOuterInner(jdst,it.index()) = it.value();
58
+ }
59
+ dst = tmp;
60
+ }
61
+ else
62
+ {
63
+ SparseMatrix<Scalar,int(SrcStorageOrder)==RowMajor?ColMajor:RowMajor,StorageIndex> tmp(mat.rows(), mat.cols());
64
+ Matrix<StorageIndex,Dynamic,1> sizes(tmp.outerSize());
65
+ sizes.setZero();
66
+ PermutationMatrix<Dynamic,Dynamic,StorageIndex> perm_cpy;
67
+ if((Side==OnTheLeft) ^ Transposed)
68
+ perm_cpy = perm;
69
+ else
70
+ perm_cpy = perm.transpose();
71
+
72
+ for(Index j=0; j<mat.outerSize(); ++j)
73
+ for(typename MatrixTypeCleaned::InnerIterator it(mat,j); it; ++it)
74
+ sizes[perm_cpy.indices().coeff(it.index())]++;
75
+ tmp.reserve(sizes);
76
+ for(Index j=0; j<mat.outerSize(); ++j)
77
+ for(typename MatrixTypeCleaned::InnerIterator it(mat,j); it; ++it)
78
+ tmp.insertByOuterInner(perm_cpy.indices().coeff(it.index()),j) = it.value();
79
+ dst = tmp;
80
+ }
81
+ }
82
+ };
83
+
84
+ }
85
+
86
+ namespace internal {
87
+
88
+ template <int ProductTag> struct product_promote_storage_type<Sparse, PermutationStorage, ProductTag> { typedef Sparse ret; };
89
+ template <int ProductTag> struct product_promote_storage_type<PermutationStorage, Sparse, ProductTag> { typedef Sparse ret; };
90
+
91
+ // TODO, the following two overloads are only needed to define the right temporary type through
92
+ // typename traits<permutation_sparse_matrix_product<Rhs,Lhs,OnTheRight,false> >::ReturnType
93
+ // whereas it should be correctly handled by traits<Product<> >::PlainObject
94
+
95
+ template<typename Lhs, typename Rhs, int ProductTag>
96
+ struct product_evaluator<Product<Lhs, Rhs, AliasFreeProduct>, ProductTag, PermutationShape, SparseShape>
97
+ : public evaluator<typename permutation_matrix_product<Rhs,OnTheLeft,false,SparseShape>::ReturnType>
98
+ {
99
+ typedef Product<Lhs, Rhs, AliasFreeProduct> XprType;
100
+ typedef typename permutation_matrix_product<Rhs,OnTheLeft,false,SparseShape>::ReturnType PlainObject;
101
+ typedef evaluator<PlainObject> Base;
102
+
103
+ enum {
104
+ Flags = Base::Flags | EvalBeforeNestingBit
105
+ };
106
+
107
+ explicit product_evaluator(const XprType& xpr)
108
+ : m_result(xpr.rows(), xpr.cols())
109
+ {
110
+ ::new (static_cast<Base*>(this)) Base(m_result);
111
+ generic_product_impl<Lhs, Rhs, PermutationShape, SparseShape, ProductTag>::evalTo(m_result, xpr.lhs(), xpr.rhs());
112
+ }
113
+
114
+ protected:
115
+ PlainObject m_result;
116
+ };
117
+
118
+ template<typename Lhs, typename Rhs, int ProductTag>
119
+ struct product_evaluator<Product<Lhs, Rhs, AliasFreeProduct>, ProductTag, SparseShape, PermutationShape >
120
+ : public evaluator<typename permutation_matrix_product<Lhs,OnTheRight,false,SparseShape>::ReturnType>
121
+ {
122
+ typedef Product<Lhs, Rhs, AliasFreeProduct> XprType;
123
+ typedef typename permutation_matrix_product<Lhs,OnTheRight,false,SparseShape>::ReturnType PlainObject;
124
+ typedef evaluator<PlainObject> Base;
125
+
126
+ enum {
127
+ Flags = Base::Flags | EvalBeforeNestingBit
128
+ };
129
+
130
+ explicit product_evaluator(const XprType& xpr)
131
+ : m_result(xpr.rows(), xpr.cols())
132
+ {
133
+ ::new (static_cast<Base*>(this)) Base(m_result);
134
+ generic_product_impl<Lhs, Rhs, SparseShape, PermutationShape, ProductTag>::evalTo(m_result, xpr.lhs(), xpr.rhs());
135
+ }
136
+
137
+ protected:
138
+ PlainObject m_result;
139
+ };
140
+
141
+ } // end namespace internal
142
+
143
+ /** \returns the matrix with the permutation applied to the columns
144
+ */
145
+ template<typename SparseDerived, typename PermDerived>
146
+ inline const Product<SparseDerived, PermDerived, AliasFreeProduct>
147
+ operator*(const SparseMatrixBase<SparseDerived>& matrix, const PermutationBase<PermDerived>& perm)
148
+ { return Product<SparseDerived, PermDerived, AliasFreeProduct>(matrix.derived(), perm.derived()); }
149
+
150
+ /** \returns the matrix with the permutation applied to the rows
151
+ */
152
+ template<typename SparseDerived, typename PermDerived>
153
+ inline const Product<PermDerived, SparseDerived, AliasFreeProduct>
154
+ operator*( const PermutationBase<PermDerived>& perm, const SparseMatrixBase<SparseDerived>& matrix)
155
+ { return Product<PermDerived, SparseDerived, AliasFreeProduct>(perm.derived(), matrix.derived()); }
156
+
157
+
158
+ /** \returns the matrix with the inverse permutation applied to the columns.
159
+ */
160
+ template<typename SparseDerived, typename PermutationType>
161
+ inline const Product<SparseDerived, Inverse<PermutationType>, AliasFreeProduct>
162
+ operator*(const SparseMatrixBase<SparseDerived>& matrix, const InverseImpl<PermutationType, PermutationStorage>& tperm)
163
+ {
164
+ return Product<SparseDerived, Inverse<PermutationType>, AliasFreeProduct>(matrix.derived(), tperm.derived());
165
+ }
166
+
167
+ /** \returns the matrix with the inverse permutation applied to the rows.
168
+ */
169
+ template<typename SparseDerived, typename PermutationType>
170
+ inline const Product<Inverse<PermutationType>, SparseDerived, AliasFreeProduct>
171
+ operator*(const InverseImpl<PermutationType,PermutationStorage>& tperm, const SparseMatrixBase<SparseDerived>& matrix)
172
+ {
173
+ return Product<Inverse<PermutationType>, SparseDerived, AliasFreeProduct>(tperm.derived(), matrix.derived());
174
+ }
175
+
176
+ } // end namespace Eigen
177
+
178
+ #endif // EIGEN_SPARSE_SELFADJOINTVIEW_H