tomoto 0.1.0

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Files changed (420) hide show
  1. checksums.yaml +7 -0
  2. data/CHANGELOG.md +3 -0
  3. data/LICENSE.txt +22 -0
  4. data/README.md +123 -0
  5. data/ext/tomoto/ext.cpp +245 -0
  6. data/ext/tomoto/extconf.rb +28 -0
  7. data/lib/tomoto.rb +12 -0
  8. data/lib/tomoto/ct.rb +11 -0
  9. data/lib/tomoto/hdp.rb +11 -0
  10. data/lib/tomoto/lda.rb +67 -0
  11. data/lib/tomoto/version.rb +3 -0
  12. data/vendor/EigenRand/EigenRand/Core.h +1139 -0
  13. data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
  14. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
  15. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
  16. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
  17. data/vendor/EigenRand/EigenRand/EigenRand +19 -0
  18. data/vendor/EigenRand/EigenRand/Macro.h +24 -0
  19. data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
  20. data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
  21. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
  22. data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
  23. data/vendor/EigenRand/EigenRand/doc.h +220 -0
  24. data/vendor/EigenRand/LICENSE +21 -0
  25. data/vendor/EigenRand/README.md +288 -0
  26. data/vendor/eigen/COPYING.BSD +26 -0
  27. data/vendor/eigen/COPYING.GPL +674 -0
  28. data/vendor/eigen/COPYING.LGPL +502 -0
  29. data/vendor/eigen/COPYING.MINPACK +52 -0
  30. data/vendor/eigen/COPYING.MPL2 +373 -0
  31. data/vendor/eigen/COPYING.README +18 -0
  32. data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
  33. data/vendor/eigen/Eigen/Cholesky +46 -0
  34. data/vendor/eigen/Eigen/CholmodSupport +48 -0
  35. data/vendor/eigen/Eigen/Core +537 -0
  36. data/vendor/eigen/Eigen/Dense +7 -0
  37. data/vendor/eigen/Eigen/Eigen +2 -0
  38. data/vendor/eigen/Eigen/Eigenvalues +61 -0
  39. data/vendor/eigen/Eigen/Geometry +62 -0
  40. data/vendor/eigen/Eigen/Householder +30 -0
  41. data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
  42. data/vendor/eigen/Eigen/Jacobi +33 -0
  43. data/vendor/eigen/Eigen/LU +50 -0
  44. data/vendor/eigen/Eigen/MetisSupport +35 -0
  45. data/vendor/eigen/Eigen/OrderingMethods +73 -0
  46. data/vendor/eigen/Eigen/PaStiXSupport +48 -0
  47. data/vendor/eigen/Eigen/PardisoSupport +35 -0
  48. data/vendor/eigen/Eigen/QR +51 -0
  49. data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
  50. data/vendor/eigen/Eigen/SPQRSupport +34 -0
  51. data/vendor/eigen/Eigen/SVD +51 -0
  52. data/vendor/eigen/Eigen/Sparse +36 -0
  53. data/vendor/eigen/Eigen/SparseCholesky +45 -0
  54. data/vendor/eigen/Eigen/SparseCore +69 -0
  55. data/vendor/eigen/Eigen/SparseLU +46 -0
  56. data/vendor/eigen/Eigen/SparseQR +37 -0
  57. data/vendor/eigen/Eigen/StdDeque +27 -0
  58. data/vendor/eigen/Eigen/StdList +26 -0
  59. data/vendor/eigen/Eigen/StdVector +27 -0
  60. data/vendor/eigen/Eigen/SuperLUSupport +64 -0
  61. data/vendor/eigen/Eigen/UmfPackSupport +40 -0
  62. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
  63. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
  64. data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  65. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
  66. data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
  67. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
  68. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
  69. data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
  70. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
  71. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
  72. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
  73. data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
  74. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
  75. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
  76. data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
  77. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
  78. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
  79. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
  80. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
  81. data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  82. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
  84. data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
  85. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
  86. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
  87. data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
  88. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
  89. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
  90. data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
  91. data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
  92. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  93. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
  94. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
  95. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
  96. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
  97. data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
  98. data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
  99. data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
  100. data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
  101. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
  102. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
  103. data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
  104. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
  105. data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
  106. data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
  107. data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
  108. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
  109. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
  110. data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
  111. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
  112. data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
  113. data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
  114. data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
  115. data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
  116. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
  117. data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
  118. data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
  119. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
  120. data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  121. data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
  122. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
  123. data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
  124. data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
  125. data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
  126. data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
  127. data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
  128. data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
  129. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
  130. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
  131. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
  132. data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
  133. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
  134. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
  135. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
  136. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
  137. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
  138. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
  139. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
  140. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
  141. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
  142. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
  143. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
  145. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
  146. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
  148. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
  149. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
  153. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
  154. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
  156. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
  160. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
  161. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
  162. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
  163. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
  164. data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  165. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
  166. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
  167. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
  168. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
  169. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  170. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
  171. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
  172. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  173. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
  174. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
  175. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
  176. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
  177. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  178. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  179. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  180. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
  181. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
  182. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  183. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  184. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
  185. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
  186. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
  187. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
  188. data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
  189. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
  190. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  191. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
  192. data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
  193. data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
  194. data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
  195. data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
  196. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
  197. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
  198. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
  199. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  200. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
  201. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  202. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  203. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  204. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  205. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  206. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  207. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
  208. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
  209. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  210. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
  211. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  212. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
  213. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
  214. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
  215. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
  216. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
  217. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
  218. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
  219. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  220. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
  221. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
  222. data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
  223. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
  224. data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
  225. data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
  226. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
  227. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
  228. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
  229. data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
  230. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
  231. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  232. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
  233. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
  234. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
  235. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
  236. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
  237. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
  238. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
  239. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
  240. data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
  241. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
  242. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
  243. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
  244. data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  245. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
  246. data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  247. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
  248. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
  249. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
  250. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  251. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
  252. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
  253. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  254. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
  255. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
  256. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
  257. data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  258. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
  259. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
  260. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
  261. data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  262. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
  263. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  264. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
  265. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  266. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
  267. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
  268. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  269. data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  270. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
  271. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
  272. data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  273. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
  274. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
  275. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
  276. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
  277. data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  278. data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
  279. data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  280. data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
  281. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
  282. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
  283. data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  284. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
  285. data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
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  300. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
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  345. data/vendor/tomotopy/LICENSE +21 -0
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  347. data/vendor/tomotopy/README.rst +382 -0
  348. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
  349. data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
  350. data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
  351. data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
  352. data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
  353. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
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  355. data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
  356. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
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  362. data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
  363. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
  364. data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
  365. data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
  366. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
  367. data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
  368. data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
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  371. data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
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  374. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
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  377. data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
  378. data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
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  380. data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
  381. data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
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  383. data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
  384. data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
  385. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
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  387. data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
  388. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
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  391. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
  392. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
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  396. data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
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  400. data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
  401. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
  402. data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
  403. data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
  404. data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
  405. data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
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  407. data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
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  412. data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
  413. data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
  414. data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
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  416. data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
  417. data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
  418. data/vendor/tomotopy/src/Utils/text.hpp +49 -0
  419. data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
  420. metadata +531 -0
@@ -0,0 +1,21 @@
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+ MIT License
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+
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+ Copyright (c) 2019
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+
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+ Permission is hereby granted, free of charge, to any person obtaining a copy
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+ of this software and associated documentation files (the "Software"), to deal
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+ in the Software without restriction, including without limitation the rights
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+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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+ copies of the Software, and to permit persons to whom the Software is
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+ furnished to do so, subject to the following conditions:
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+
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+ The above copyright notice and this permission notice shall be included in all
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+ copies or substantial portions of the Software.
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+
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+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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+ SOFTWARE.
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+ # EigenRand : The Fastest C++11-compatible random distribution generator for Eigen
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+
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+ EigenRand is a header-only library for [Eigen](http://eigen.tuxfamily.org/index.php?title=Main_Page), providing vectorized random number engines and vectorized random distribution generators.
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+ Since the classic Random functions of Eigen relies on an old C function `rand()`,
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+ there is no way to control random numbers and no guarantee for quality of generated numbers.
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+ In addition, Eigen's Random is slow because `rand()` is hard to vectorize.
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+
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+ EigenRand provides a variety of random distribution functions similar to C++11 standard's random functions,
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+ which can be vectorized and easily integrated into Eigen's expressions of Matrix and Array.
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+
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+ You can get 5~10 times speed by just replacing old Eigen's Random or unvectorizable c++11 random number generators with EigenRand.
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+
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+ ## Features
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+
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+ * C++11-compatible Random Number Generator
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+ * 5~10 times faster than non-vectorized functions
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+ * Header-only (like Eigen)
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+ * Can be easily integrated with Eigen's expressions
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+ * Currently supports only x86 and x86-64 architecture
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+
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+ ## Requirement
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+
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+ * Eigen 3.3.7
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+ * C++11-compatible compilers
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+
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+ ## Documentation
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+
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+ https://bab2min.github.io/eigenrand/
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+
30
+ ## Functions
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+
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+ ### Random distributions for real types
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+
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+ | Function | Scalar Type | Description | Equivalent to |
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+ |:---:|:---:|:---:|:---:|
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+ | `Eigen::Rand::balanced` | float, double | generates real values in the [-1, 1] range | `Eigen::DenseBase<Ty>::Random` for floating point types |
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+ | `Eigen::Rand::cauchy` | float, double | generates real values on the [Cauchy distribution](https://en.wikipedia.org/wiki/Cauchy_distribution). | `std::cauchy_distribution` |
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+ | `Eigen::Rand::chiSquared` | float, double | generates real values on a [chi-squared distribution](https://en.wikipedia.org/wiki/Chi-squared_distribution). | `std::chi_squared_distribution` |
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+ | `Eigen::Rand::exponential` | float, double | generates real values on an [exponential distribution](https://en.wikipedia.org/wiki/Exponential_distribution). | `std::exponential_distribution` |
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+ | `Eigen::Rand::extremeValue` | float, double | generates real values on an [extreme value distribution](https://en.wikipedia.org/wiki/Generalized_extreme_value_distribution). | `std::extreme_value_distribution` |
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+ | `Eigen::Rand::fisherF` | float, double | generates real values on the [Fisher's F distribution](https://en.wikipedia.org/wiki/F_distribution). | `std::fisher_f_distribution` |
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+ | `Eigen::Rand::gamma` | float, double | generates real values on a [gamma distribution](https://en.wikipedia.org/wiki/Gamma_distribution). | `std::gamma_distribution` |
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+ | `Eigen::Rand::lognormal` | float, double | generates real values on a [lognormal distribution](https://en.wikipedia.org/wiki/Lognormal_distribution). | `std::lognormal_distribution` |
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+ | `Eigen::Rand::normal` | float, double | generates real values on a [normal distribution](https://en.wikipedia.org/wiki/Normal_distribution). | `std::normal_distribution` |
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+ | `Eigen::Rand::studentT` | float, double | generates real values on the [Student's t distribution](https://en.wikipedia.org/wiki/Student%27s_t-distribution). | `std::student_t_distribution` |
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+ | `Eigen::Rand::uniformReal` | float, double | generates real values in the `[-1, 0)` range. | `std::generate_canonical` |
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+ | `Eigen::Rand::weibull` | float, double | generates real values on the [Weibull distribution](https://en.wikipedia.org/wiki/Weibull_distribution). | `std::weibull_distribution` |
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+
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+ ### Random distributions for integer types
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+
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+ | Function | Scalar Type | Description | Equivalent to |
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+ |:---:|:---:|:---:|:---:|
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+ | `Eigen::Rand::binomial` | int | generates integers on a [binomial distribution](https://en.wikipedia.org/wiki/Binomial_distribution). | `std::binomial_distribution` |
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+ | `Eigen::Rand::discrete` | int | generates random integers on a discrete distribution. | `std::discrete_distribution` |
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+ | `Eigen::Rand::geometric` | int | generates integers on a [geometric distribution](https://en.wikipedia.org/wiki/Geometric_distribution). | `std::geometric_distribution` |
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+ | `Eigen::Rand::negativeBinomial` | int | generates integers on a [negative binomial distribution](https://en.wikipedia.org/wiki/Negative_binomial_distribution). | `std::negative_binomial_distribution` |
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+ | `Eigen::Rand::poisson` | int | generates integers on the [Poisson distribution](https://en.wikipedia.org/wiki/Poisson_distribution). | `std::poisson_distribution` |
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+ | `Eigen::Rand::randBits` | int | generates integers with random bits. | `Eigen::DenseBase<Ty>::Random` for integer types |
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+ | `Eigen::Rand::uniformInt` | int | generates integers in the `[min, max]` range. | `std::uniform_int_distribution` |
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+
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+ ### Random number engines
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+
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+ | | Description | Equivalent to |
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+ |:---:|:---:|:---:|
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+ | `Eigen::Rand::Vmt19937_64` | a vectorized version of Mersenne Twister algorithm. It generates two 64bit random integers simultaneously with SSE2 and four integers with AVX2. | `std::mt19937_64` |
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+
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+ ## Performance
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+
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+ The following result is a measure of the time in seconds it takes to generate 1M random numbers.
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+ It shows the average of 20 times.
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+
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+ ### Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz (Ubuntu 16.04, gcc5.4)
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+
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+ | | C++ std (or Eigen) | EigenRand (No Vect.) | EigenRand (SSE2) | EigenRand (SSSE3) | EigenRand (AVX) | EigenRand (AVX2) |
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+ |---|---:|---:|---:|---:|---:|---:|
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+ | `balanced`* | 9.0 | 5.9 | 1.5 | 1.4 | 1.3 | 0.9 |
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+ | `balanced`(double)* | 8.7 | 6.4 | 3.3 | 2.9 | 1.7 | 1.7 |
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+ | `binomial(20, 0.5)` | 400.8 | 118.5 | 32.7 | 36.6 | 30.0 | 22.7 |
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+ | `binomial(50, 0.01)` | 71.7 | 22.5 | 7.7 | 8.3 | 7.9 | 6.6 |
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+ | `binomial(100, 0.75)` | 340.5 | 454.5 | 91.7 | 111.5 | 106.3 | 86.4 |
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+ | `cauchy` | 36.1 | 54.4 | 6.1 | 7.1 | 4.7 | 3.9 |
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+ | `chiSquared` | 80.5 | 249.5 | 64.6 | 58.0 | 29.4 | 28.8 |
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+ | `discrete`(int32) | - | 14.0 | 2.9 | 2.6 | 2.4 | 1.7 |
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+ | `discrete`(fp32) | - | 21.9 | 4.3 | 4.0 | 3.6 | 3.0 |
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+ | `discrete`(fp64) | 72.4 | 21.4 | 6.9 | 6.5 | 4.9 | 3.7 |
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+ | `exponential` | 31.0 | 25.3 | 5.5 | 5.3 | 3.3 | 2.9 |
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+ | `extremeValue` | 66.0 | 60.1 | 11.9 | 10.7 | 6.5 | 5.8 |
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+ | `fisherF(1, 1)` | 178.1 | 35.1 | 33.2 | 39.3 | 22.9 | 18.7 |
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+ | `fisherF(5, 5)` | 141.8 | 415.2 | 136.47 | 172.4 | 92.4 | 74.9 |
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+ | `gamma(0.2, 1)` | 207.8 | 211.4 | 54.6 | 51.2 | 26.9 | 27.0 |
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+ | `gamma(5, 3)` | 80.9 | 60.0 | 14.3 | 13.3 | 11.4 | 8.0 |
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+ | `gamma(10.5, 1)` | 81.1 | 248.6 | 63.3 | 58.5 | 29.2 | 28.4 |
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+ | `geometric` | 43.0 | 22.4 | 6.7 | 7.4 | 5.8 | |
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+ | `lognormal` | 66.3 | 55.4 | 12.8 | 11.8 | 6.2 | 6.2 |
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+ | `negativeBinomial(10, 0.5)` | 312.0 | 301.4 | 82.9 | 100.6 | 95.3 | 77.9 |
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+ | `negativeBinomial(20, 0.25)` | 483.4 | 575.9 | 125.0 | 158.2 | 148.4 | 119.5 |
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+ | `normal(0, 1)` | 38.1 | 28.5 | 6.8 | 6.2 | 3.8 | 3.7 |
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+ | `normal(2, 3)` | 37.6 | 29.0 | 7.3 | 6.6 | 4.0 | 3.9 |
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+ | `poisson(1)` | 31.8 | 25.2 | 9.8 | 10.8 | 9.7 | 8.2 |
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+ | `poisson(16)` | 231.8 | 274.1 | 66.2 | 80.7 | 74.4 | 64.2 |
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+ | `randBits` | 5.2 | 5.4 | 1.4 | 1.3 | 1.1 | 1.0 |
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+ | `studentT(1)` | 122.7 | 120.1 | 15.3 | 19.2 | 12.6 | 9.4 |
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+ | `studentT(20)` | 102.2 | 111.1 | 15.4 | 19.2 | 12.2 | 9.4 |
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+ | `uniformInt(0~63)` | 22.4 | 4.7 | 1.7 | 1.6 | 1.4 | 1.1 |
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+ | `uniformInt(0~100k)` | 21.8 | 10.1 | 6.2 | 6.7 | 6.6 | 5.4 |
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+ | `uniformReal` | 12.9 | 5.7 | 1.4 | 1.2 | 1.4 | 0.7 |
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+ | `weibull` | 41.0 | 35.8 | 17.7 | 15.5 | 8.5 | 8.5 |
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+
109
+ * Since there is no equivalent class to `balanced` in C++11 std, we used Eigen::DenseBase::Random instead.
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+
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+ | | C++ std | EigenRand (No Vect.) | EigenRand (SSE2) | EigenRand (SSSE3) | EigenRand (AVX) | EigenRand (AVX2) |
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+ |---|---:|---:|---:|---:|---:|---:|
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+ | Mersenne Twister(int32) | 4.7 | 5.6 | 4.0 | 3.7 | 3.5 | 3.6 |
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+ | Mersenne Twister(int64) | 5.4 | 5.3 | 4.0 | 3.9 | 3.4 | 2.6 |
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+
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+ ### Intel(R) Xeon(R) CPU E5-1650 v2 @ 3.50GHz (macOS 10.15, clang-1103)
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+
118
+ | | C++ std (or Eigen) | EigenRand (No Vect.) | EigenRand (SSE2) | EigenRand (SSSE3) | EigenRand (AVX) |
119
+ |---|---:|---:|---:|---:|---:|
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+ | `balanced`* | 6.5 | 7.3 | 1.1 | 1.4 | 1.1 |
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+ | `balanced`(double)* | 6.6 | 7.5 | 2.6 | 3.3 | 2.4 |
122
+ | `binomial(20, 0.5)` | 38.8 | 164.9 | 27.7 | 29.3 | 24.9 |
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+ | `binomial(50, 0.01)` | 21.9 | 27.6 | 6.6 | 7.0 | 6.3 |
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+ | `binomial(100, 0.75)` | 52.2 | 421.9 | 93.6 | 94.8 | 89.1 |
125
+ | `cauchy` | 36.0 | 30.4 | 5.6 | 5.8 | 4.0 |
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+ | `chiSquared` | 84.4 | 152.2 | 44.1 | 48.7 | 26.2 |
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+ | `discrete`(int32) | - | 12.4 | 2.1 | 2.6 | 2.2 |
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+ | `discrete`(fp32) | - | 23.2 | 3.4 | 3.7 | 3.4 |
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+ | `discrete`(fp64) | 48.6 | 22.9 | 4.2 | 5.0 | 4.6 |
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+ | `exponential` | 22.0 | 18.0 | 4.1 | 4.9 | 3.2 |
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+ | `extremeValue` | 36.2 | 32.0 | 8.7 | 9.5 | 5.1 |
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+ | `fisherF(1, 1)` | 158.2 | 73.1 | 32.3 | 32.1 | 18.1 |
133
+ | `fisherF(5, 5)` | 177.3 | 310.1 | 127.0 | 121.8 | 74.3 |
134
+ | `gamma(0.2, 1)` | 69.8 | 80.4 | 28.5 | 33.8 | 19.2 |
135
+ | `gamma(5, 3)` | 83.9 | 53.3 | 10.6 | 12.4 | 8.6 |
136
+ | `gamma(10.5, 1)` | 83.2 | 150.4 | 43.3 | 48.4 | 26.2 |
137
+ | `geometric` | 39.6 | 19.0 | 4.3 | 4.4 | 4.1 |
138
+ | `lognormal` | 43.8 | 40.7 | 9.0 | 10.8 | 5.7 |
139
+ | `negativeBinomial(10, 0.5)` | 217.4 | 274.8 | 71.6 | 73.7 | 68.2 |
140
+ | `negativeBinomial(20, 0.25)` | 192.9 | 464.9 | 112.0 | 111.5 | 105.7 |
141
+ | `normal(0, 1)` | 32.6 | 28.6 | 5.5 | 6.5 | 3.8 |
142
+ | `normal(2, 3)` | 32.9 | 30.5 | 5.7 | 6.7 | 3.9 |
143
+ | `poisson(1)` | 37.9 | 31.0 | 7.5 | 7.8 | 7.1 |
144
+ | `poisson(16)` | 92.4 | 243.3 | 55.6 | 57.7 | 53.7 |
145
+ | `randBits` | 6.5 | 6.5 | 1.1 | 1.3 | 1.1 |
146
+ | `studentT(1)` | 115.0 | 54.1 | 15.5 | 15.7 | 8.3 |
147
+ | `studentT(20)` | 121.2 | 53.8 | 15.8 | 16.0 | 8.2 |
148
+ | `uniformInt(0~63)` | 20.2 | 9.8 | 1.8 | 1.8 | 1.6 |
149
+ | `uniformInt(0~100k)` | 25.7 | 16.1 | 8.1 | 8.5 | 7.2 |
150
+ | `uniformReal` | 12.7 | 7.0 | 1.0 | 1.2 | 1.1 |
151
+ | `weibull` | 23.1 | 19.2 | 11.6 | 13.6 | 7.6 |
152
+
153
+ * Since there is no equivalent class to `balanced` in C++11 std, we used Eigen::DenseBase::Random instead.
154
+
155
+ | | C++ std | EigenRand (No Vect.) | EigenRand (SSE2) | EigenRand (SSSE3) | EigenRand (AVX) |
156
+ |---|---:|---:|---:|---:|---:|
157
+ | Mersenne Twister(int32) | 6.2 | 6.4 | 1.7 | 2.0 | 1.8 |
158
+ | Mersenne Twister(int64) | 6.4 | 6.3 | 2.5 | 3.1 | 2.4 |
159
+
160
+ ### Intel(R) Xeon(R) Platinum 8171M CPU @ 2.60GHz (Windows Server 2019, MSVC2019)
161
+
162
+ | | C++ std (or Eigen) | EigenRand (No Vect.) | EigenRand (SSE2) | EigenRand (AVX) | EigenRand (AVX2) |
163
+ |---|---:|---:|---:|---:|---:|
164
+ | `balanced`* | 20.7 | 7.2 | 3.3 | 4.0 | 2.2 |
165
+ | `balanced`(double)* | 21.9 | 8.8 | 6.7 | 4.3 | 4.3 |
166
+ | `binomial(20, 0.5)` | 718.3 | 141.0 | 38.1 | 30.2 | 32.7 |
167
+ | `binomial(50, 0.01)` | 61.5 | 21.4 | 7.5 | 6.5 | 8.0 |
168
+ | `binomial(100, 0.75)` | 495.9 | 1042.5 | 100.6 | 95.2 | 93.0 |
169
+ | `cauchy` | 71.6 | 30.0 | 6.8 | 6.4 | 3.0 |
170
+ | `chiSquared` | 243.0 | 147.3 | 63.5 | 34.1 | 24.0 |
171
+ | `discrete`(int32) | - | 12.4 | 3.5 | 2.7 | 2.2 |
172
+ | `discrete`(fp32) | - | 19.2 | 5.1 | 3.6 | 3.7 |
173
+ | `discrete`(fp64) | 83.9 | 19.0 | 6.7 | 7.4 | 4.6 |
174
+ | `exponential` | 58.7 | 16.0 | 6.8 | 6.4 | 3.0 |
175
+ | `extremeValue` | 64.6 | 27.7 | 13.5 | 9.8 | 5.5 |
176
+ | `fisherF(1, 1)` | 178.7 | 75.2 | 35.3 | 28.4 | 17.5 |
177
+ | `fisherF(5, 5)` | 491.0 | 298.4 | 125.8 | 87.4 | 60.5 |
178
+ | `gamma(0.2, 1)` | 211.7 | 69.3 | 43.7 | 24.7 | 18.7 |
179
+ | `gamma(5, 3)` | 272.5 | 42.3 | 17.6 | 17.2 | 8.5 |
180
+ | `gamma(10.5, 1)` | 237.8 | 146.2 | 63.7 | 33.8 | 23.5 |
181
+ | `geometric` | 49.3 | 17.0 | 7.0 | 5.8 | 5.4 |
182
+ | `lognormal` | 169.8 | 37.6 | 12.7 | 7.2 | 5.0 |
183
+ | `negativeBinomial(10, 0.5)` | 752.7 | 462.3 | 87.0 | 83.0 | 81.6 |
184
+ | `negativeBinomial(20, 0.25)` | 611.4 | 855.3 | 123.7 | 125.3 | 116.6 |
185
+ | `normal(0, 1)` | 78.4 | 21.1 | 6.9 | 4.6 | 2.9 |
186
+ | `normal(2, 3)` | 77.2 | 22.3 | 6.8 | 4.8 | 3.1 |
187
+ | `poisson(1)` | 77.4 | 28.9 | 10.0 | 8.1 | 10.1 |
188
+ | `poisson(16)` | 312.9 | 485.5 | 63.6 | 61.5 | 60.5 |
189
+ | `randBits` | 6.0 | 6.2 | 3.1 | 2.7 | 2.7 |
190
+ | `studentT(1)` | 175.8 | 53.9 | 17.3 | 12.5 | 7.7 |
191
+ | `studentT(20)` | 173.2 | 55.5 | 17.9 | 12.7 | 7.6 |
192
+ | `uniformInt(0~63)` | 39.1 | 5.2 | 2.0 | 1.4 | 1.6 |
193
+ | `uniformInt(0~100k)` | 38.5 | 12.3 | 7.6 | 6.0 | 7.7 |
194
+ | `uniformReal` | 53.4 | 5.7 | 1.9 | 2.3 | 1.0 |
195
+ | `weibull` | 75.1 | 44.3 | 18.5 | 14.3 | 7.9 |
196
+
197
+ * Since there is no equivalent class to `balanced` in C++11 std, we used Eigen::DenseBase::Random instead.
198
+
199
+ | | C++ std | EigenRand (No Vect.) | EigenRand (SSE2) | EigenRand (AVX) | EigenRand (AVX2) |
200
+ |---|---:|---:|---:|---:|---:|
201
+ | Mersenne Twister(int32) | 6.5 | 6.4 | 5.6 | 5.1 | 4.5 |
202
+ | Mersenne Twister(int64) | 6.6 | 6.5 | 6.9 | 5.9 | 5.1 |
203
+
204
+ ### AMD Ryzen 7 3700x CPU @ 3.60GHz (Windows 10, MSVC2017)
205
+
206
+ | | C++ std (or Eigen) | EigenRand (SSE2) | EigenRand (AVX) | EigenRand (AVX2) |
207
+ |---|---:|---:|---:|---:|
208
+ | `balanced`* | 20.8 | 1.9 | 2.0 | 1.4 |
209
+ | `balanced`(double)* | 21.7 | 4.1 | 2.7 | 3.0 |
210
+ | `binomial(20, 0.5)` | 416.0 | 27.7 | 28.9 | 29.1 |
211
+ | `binomial(50, 0.01)` | 37.8 | 6.3 | 6.0 | 6.6 |
212
+ | `binomial(100, 0.75)` | 309.1 | 72.4 | 66.0 | 67.0 |
213
+ | `cauchy` | 42.2 | 4.8 | 5.1 | 2.7 |
214
+ | `chiSquared` | 153.8 | 33.5 | 21.2 | 17.0 |
215
+ | `discrete`(int32) | - | 2.4 | 2.3 | 2.5 |
216
+ | `discrete`(fp32) | - | 2.6 | 2.3 | 3.5 |
217
+ | `discrete`(fp64) | 55.8 | 5.1 | 4.7 | 4.3 |
218
+ | `exponential` | 33.4 | 6.4 | 2.8 | 2.2 |
219
+ | `extremeValue` | 39.4 | 7.8 | 4.6 | 4.0 |
220
+ | `fisherF(1, 1)` | 103.9 | 25.3 | 14.9 | 11.7 |
221
+ | `fisherF(5, 5)` | 295.7 | 85.5 | 58.3 | 44.8 |
222
+ | `gamma(0.2, 1)` | 128.8 | 31.9 | 18.3 | 15.8 |
223
+ | `gamma(5, 3)` | 156.1 | 9.7 | 8.0 | 5.0 |
224
+ | `gamma(10.5, 1)` | 148.5 | 33.1 | 21.1 | 17.2 |
225
+ | `geometric` | 27.1 | 6.6 | 4.3 | 4.1 |
226
+ | `lognormal` | 104.0 | 6.6 | 4.7 | 3.5 |
227
+ | `negativeBinomial(10, 0.5)` | 462.1 | 60.0 | 56.4 | 58.6 |
228
+ | `negativeBinomial(20, 0.25)` | 357.6 | 84.5 | 80.6 | 78.4 |
229
+ | `normal(0, 1)` | 48.8 | 4.2 | 3.7 | 2.3 |
230
+ | `normal(2, 3)` | 48.8 | 4.5 | 3.8 | 2.4 |
231
+ | `poisson(1)` | 46.4 | 7.9 | 7.4 | 8.2 |
232
+ | `poisson(16)` | 192.4 | 43.2 | 40.4 | 40.9 |
233
+ | `randBits` | 4.2 | 1.7 | 1.5 | 1.8 |
234
+ | `studentT(1)` | 107.0 | 12.3 | 6.8 | 5.7 |
235
+ | `studentT(20)` | 107.1 | 12.3 | 6.8 | 5.8 |
236
+ | `uniformInt(0~63)` | 31.2 | 1.1 | 1.0 | 1.2 |
237
+ | `uniformInt(0~100k)` | 27.7 | 5.6 | 5.6 | 5.4 |
238
+ | `uniformReal` | 30.7 | 1.1 | 1.0 | 0.6 |
239
+ | `weibull` | 46.5 | 10.6 | 6.4 | 5.2 |
240
+
241
+ * Since there is no equivalent class to `balanced` in C++11 std, we used Eigen::DenseBase::Random instead.
242
+
243
+ | | C++ std | EigenRand (SSE2) | EigenRand (AVX) | EigenRand (AVX2) |
244
+ |---|---:|---:|---:|---:|
245
+ | Mersenne Twister(int32) | 5.0 | 3.4 | 3.4 | 3.3 |
246
+ | Mersenne Twister(int64) | 5.1 | 3.9 | 3.9 | 3.3 |
247
+
248
+ ## Accuracy
249
+ Since vectorized mathematical functions may have a loss of precision, I measured how well the generated random number fits its actual distribution.
250
+ 32768 samples were generated and Earth Mover's Distance between samples and its actual distribution was calculated for each distribution.
251
+ Following table shows the average distance (and stdev.) of results performed 50 times for different seeds.
252
+
253
+ | | C++ std | EigenRand |
254
+ |---|---:|---:|
255
+ | `balanced`* | .0034(.0015) | .0034(.0015) |
256
+ | `chiSquared(7)` | .0260(.0091) | .0242(.0079) |
257
+ | `exponential(1)` | .0065(.0025) | .0072(.0022) |
258
+ | `extremeValue(1, 1)` | .0097(.0029) | .0088(.0025) |
259
+ | `gamma(0.2, 1)` | .0380(.0021) | .0377(.0025) |
260
+ | `gamma(1, 1)` | .0070(.0020) | .0065(.0023) |
261
+ | `gamma(5, 1)` | .0169(.0065) | .0170(.0051) |
262
+ | `lognormal(0, 1)` | .0072(.0029) | .0067(.0022) |
263
+ | `normal(0, 1)` | .0070(.0024) | .0073(.0020) |
264
+ | `uniformReal` | .0018(.0008) | .0017(.0007) |
265
+ | `weibull(2, 1)` | .0032(.0013) | .0031(.0010) |
266
+
267
+ (* Result of `balanced` were from Eigen::Random, not C++ std)
268
+
269
+ The smaller value means that the sample result fits its distribution better.
270
+ The results of EigenRand and C++ std appear to be equivalent within the margin of error.
271
+
272
+
273
+ ## License
274
+ MIT License
275
+
276
+ ## History
277
+ ### 0.2.2 (2020-08-02)
278
+ * Now `ParallelRandomEngineAdaptor` and `MersenneTwister` use aligned array on heap.
279
+
280
+ ### 0.2.1 (2020-07-11)
281
+ * A new template class `ParallelRandomEngineAdaptor` yielding the same random sequence regardless of SIMD ISA was added.
282
+
283
+ ### 0.2.0 (2020-07-04)
284
+ * New distributions including `cauchy`, `studentT`, `fisherF`, `uniformInt`, `binomial`, `negativeBinomial`, `poisson` and `geometric` were added.
285
+ * A new member function `uniform_real` for `PacketRandomEngine` was added.
286
+
287
+ ### 0.1.0 (2020-06-27)
288
+ * The first version of `EigenRand`
@@ -0,0 +1,26 @@
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+ /*
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+ Copyright (c) 2011, Intel Corporation. All rights reserved.
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+ 6. Conveying Non-Source Forms.
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+ A "User Product" is either (1) a "consumer product", which means any
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+ 7. Additional Terms.
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+
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+ "Additional permissions" are terms that supplement the terms of this
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+ Additional permissions that are applicable to the entire Program shall
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+ When you convey a copy of a covered work, you may at your option
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+ remove any additional permissions from that copy, or from any part of
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+ Notwithstanding any other provision of this License, for material you
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+ a) Disclaiming warranty or limiting liability differently from the
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+ c) Prohibiting misrepresentation of the origin of that material, or
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+ All other non-permissive additional terms are considered "further
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+ Additional terms, permissive or non-permissive, may be stated in the
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+ the above requirements apply either way.
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+ 8. Termination.
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+
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+ You may not propagate or modify a covered work except as expressly
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+ However, if you cease all violation of this License, then your
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+ Moreover, your license from a particular copyright holder is
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+ Termination of your rights under this section does not terminate the
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+ reinstated, you do not qualify to receive new licenses for the same
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+ material under section 10.
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+
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+ 9. Acceptance Not Required for Having Copies.
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+ You are not required to accept this License in order to receive or
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+ run a copy of the Program. Ancillary propagation of a covered work
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+ occurring solely as a consequence of using peer-to-peer transmission
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+ to receive a copy likewise does not require acceptance. However,
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+ nothing other than this License grants you permission to propagate or
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+
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+ 10. Automatic Licensing of Downstream Recipients.
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+
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+ Each time you convey a covered work, the recipient automatically
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+ receives a license from the original licensors, to run, modify and
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+ propagate that work, subject to this License. You are not responsible
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+ An "entity transaction" is a transaction transferring control of an
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+ You may not impose any further restrictions on the exercise of the
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+ any patent claim is infringed by making, using, selling, offering for
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+ sale, or importing the Program or any portion of it.
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+
471
+ 11. Patents.
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+
473
+ A "contributor" is a copyright holder who authorizes use under this
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+ License of the Program or a work on which the Program is based. The
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+ work thus licensed is called the contributor's "contributor version".
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+
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+ A contributor's "essential patent claims" are all patent claims
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+ owned or controlled by the contributor, whether already acquired or
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+ hereafter acquired, that would be infringed by some manner, permitted
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+ but do not include claims that would be infringed only as a
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+ consequence of further modification of the contributor version. For
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+ purposes of this definition, "control" includes the right to grant
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+ patent sublicenses in a manner consistent with the requirements of
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+ Each contributor grants you a non-exclusive, worldwide, royalty-free
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+
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+ In the following three paragraphs, a "patent license" is any express
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+ agreement or commitment, however denominated, not to enforce a patent
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+ (such as an express permission to practice a patent or covenant not to
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+ sue for patent infringement). To "grant" such a patent license to a
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+ patent against the party.
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+
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+ If you convey a covered work, knowingly relying on a patent license,
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+ and the Corresponding Source of the work is not available for anyone
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+ then you must either (1) cause the Corresponding Source to be so
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+ available, or (2) arrange to deprive yourself of the benefit of the
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+ patent license for this particular work, or (3) arrange, in a manner
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+ consistent with the requirements of this License, to extend the patent
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+ license to downstream recipients. "Knowingly relying" means you have
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+ actual knowledge that, but for the patent license, your conveying the
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+ covered work in a country, or your recipient's use of the covered work
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+ in a country, would infringe one or more identifiable patents in that
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+ country that you have reason to believe are valid.
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+
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+ If, pursuant to or in connection with a single transaction or
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+ arrangement, you convey, or propagate by procuring conveyance of, a
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+ covered work, and grant a patent license to some of the parties
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+ you grant is automatically extended to all recipients of the covered
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+ work and works based on it.
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+
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+ A patent license is "discriminatory" if it does not include within
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+ the scope of its coverage, prohibits the exercise of, or is
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+ conditioned on the non-exercise of one or more of the rights that are
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+ specifically granted under this License. You may not convey a covered
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+ work if you are a party to an arrangement with a third party that is
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+ in the business of distributing software, under which you make payment
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+ to the third party based on the extent of your activity of conveying
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+ the work, and under which the third party grants, to any of the
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+ parties who would receive the covered work from you, a discriminatory
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+ patent license (a) in connection with copies of the covered work
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+ conveyed by you (or copies made from those copies), or (b) primarily
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+ for and in connection with specific products or compilations that
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+ contain the covered work, unless you entered into that arrangement,
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+ or that patent license was granted, prior to 28 March 2007.
535
+
536
+ Nothing in this License shall be construed as excluding or limiting
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+ any implied license or other defenses to infringement that may
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+ otherwise be available to you under applicable patent law.
539
+
540
+ 12. No Surrender of Others' Freedom.
541
+
542
+ If conditions are imposed on you (whether by court order, agreement or
543
+ otherwise) that contradict the conditions of this License, they do not
544
+ excuse you from the conditions of this License. If you cannot convey a
545
+ covered work so as to satisfy simultaneously your obligations under this
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+ License and any other pertinent obligations, then as a consequence you may
547
+ not convey it at all. For example, if you agree to terms that obligate you
548
+ to collect a royalty for further conveying from those to whom you convey
549
+ the Program, the only way you could satisfy both those terms and this
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+ License would be to refrain entirely from conveying the Program.
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+
552
+ 13. Use with the GNU Affero General Public License.
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+
554
+ Notwithstanding any other provision of this License, you have
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+ permission to link or combine any covered work with a work licensed
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+ under version 3 of the GNU Affero General Public License into a single
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+ combined work, and to convey the resulting work. The terms of this
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+ License will continue to apply to the part which is the covered work,
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+ but the special requirements of the GNU Affero General Public License,
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+ section 13, concerning interaction through a network will apply to the
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+ combination as such.
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+
563
+ 14. Revised Versions of this License.
564
+
565
+ The Free Software Foundation may publish revised and/or new versions of
566
+ the GNU General Public License from time to time. Such new versions will
567
+ be similar in spirit to the present version, but may differ in detail to
568
+ address new problems or concerns.
569
+
570
+ Each version is given a distinguishing version number. If the
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+ Program specifies that a certain numbered version of the GNU General
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+ Public License "or any later version" applies to it, you have the
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+ option of following the terms and conditions either of that numbered
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+ version or of any later version published by the Free Software
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+ Foundation. If the Program does not specify a version number of the
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+ GNU General Public License, you may choose any version ever published
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+ by the Free Software Foundation.
578
+
579
+ If the Program specifies that a proxy can decide which future
580
+ versions of the GNU General Public License can be used, that proxy's
581
+ public statement of acceptance of a version permanently authorizes you
582
+ to choose that version for the Program.
583
+
584
+ Later license versions may give you additional or different
585
+ permissions. However, no additional obligations are imposed on any
586
+ author or copyright holder as a result of your choosing to follow a
587
+ later version.
588
+
589
+ 15. Disclaimer of Warranty.
590
+
591
+ THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
592
+ APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
593
+ HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
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+ OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,
595
+ THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
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+ PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM
597
+ IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
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+ ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
599
+
600
+ 16. Limitation of Liability.
601
+
602
+ IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
603
+ WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
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+ THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
605
+ GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
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+ USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
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+ DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
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+ PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
609
+ EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
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+ SUCH DAMAGES.
611
+
612
+ 17. Interpretation of Sections 15 and 16.
613
+
614
+ If the disclaimer of warranty and limitation of liability provided
615
+ above cannot be given local legal effect according to their terms,
616
+ reviewing courts shall apply local law that most closely approximates
617
+ an absolute waiver of all civil liability in connection with the
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+ Program, unless a warranty or assumption of liability accompanies a
619
+ copy of the Program in return for a fee.
620
+
621
+ END OF TERMS AND CONDITIONS
622
+
623
+ How to Apply These Terms to Your New Programs
624
+
625
+ If you develop a new program, and you want it to be of the greatest
626
+ possible use to the public, the best way to achieve this is to make it
627
+ free software which everyone can redistribute and change under these terms.
628
+
629
+ To do so, attach the following notices to the program. It is safest
630
+ to attach them to the start of each source file to most effectively
631
+ state the exclusion of warranty; and each file should have at least
632
+ the "copyright" line and a pointer to where the full notice is found.
633
+
634
+ <one line to give the program's name and a brief idea of what it does.>
635
+ Copyright (C) <year> <name of author>
636
+
637
+ This program is free software: you can redistribute it and/or modify
638
+ it under the terms of the GNU General Public License as published by
639
+ the Free Software Foundation, either version 3 of the License, or
640
+ (at your option) any later version.
641
+
642
+ This program is distributed in the hope that it will be useful,
643
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
644
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
645
+ GNU General Public License for more details.
646
+
647
+ You should have received a copy of the GNU General Public License
648
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
649
+
650
+ Also add information on how to contact you by electronic and paper mail.
651
+
652
+ If the program does terminal interaction, make it output a short
653
+ notice like this when it starts in an interactive mode:
654
+
655
+ <program> Copyright (C) <year> <name of author>
656
+ This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
657
+ This is free software, and you are welcome to redistribute it
658
+ under certain conditions; type `show c' for details.
659
+
660
+ The hypothetical commands `show w' and `show c' should show the appropriate
661
+ parts of the General Public License. Of course, your program's commands
662
+ might be different; for a GUI interface, you would use an "about box".
663
+
664
+ You should also get your employer (if you work as a programmer) or school,
665
+ if any, to sign a "copyright disclaimer" for the program, if necessary.
666
+ For more information on this, and how to apply and follow the GNU GPL, see
667
+ <http://www.gnu.org/licenses/>.
668
+
669
+ The GNU General Public License does not permit incorporating your program
670
+ into proprietary programs. If your program is a subroutine library, you
671
+ may consider it more useful to permit linking proprietary applications with
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+ the library. If this is what you want to do, use the GNU Lesser General
673
+ Public License instead of this License. But first, please read
674
+ <http://www.gnu.org/philosophy/why-not-lgpl.html>.