tomoto 0.1.0
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- checksums.yaml +7 -0
- data/CHANGELOG.md +3 -0
- data/LICENSE.txt +22 -0
- data/README.md +123 -0
- data/ext/tomoto/ext.cpp +245 -0
- data/ext/tomoto/extconf.rb +28 -0
- data/lib/tomoto.rb +12 -0
- data/lib/tomoto/ct.rb +11 -0
- data/lib/tomoto/hdp.rb +11 -0
- data/lib/tomoto/lda.rb +67 -0
- data/lib/tomoto/version.rb +3 -0
- data/vendor/EigenRand/EigenRand/Core.h +1139 -0
- data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
- data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
- data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
- data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
- data/vendor/EigenRand/EigenRand/EigenRand +19 -0
- data/vendor/EigenRand/EigenRand/Macro.h +24 -0
- data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
- data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
- data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
- data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
- data/vendor/EigenRand/EigenRand/doc.h +220 -0
- data/vendor/EigenRand/LICENSE +21 -0
- data/vendor/EigenRand/README.md +288 -0
- data/vendor/eigen/COPYING.BSD +26 -0
- data/vendor/eigen/COPYING.GPL +674 -0
- data/vendor/eigen/COPYING.LGPL +502 -0
- data/vendor/eigen/COPYING.MINPACK +52 -0
- data/vendor/eigen/COPYING.MPL2 +373 -0
- data/vendor/eigen/COPYING.README +18 -0
- data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
- data/vendor/eigen/Eigen/Cholesky +46 -0
- data/vendor/eigen/Eigen/CholmodSupport +48 -0
- data/vendor/eigen/Eigen/Core +537 -0
- data/vendor/eigen/Eigen/Dense +7 -0
- data/vendor/eigen/Eigen/Eigen +2 -0
- data/vendor/eigen/Eigen/Eigenvalues +61 -0
- data/vendor/eigen/Eigen/Geometry +62 -0
- data/vendor/eigen/Eigen/Householder +30 -0
- data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
- data/vendor/eigen/Eigen/Jacobi +33 -0
- data/vendor/eigen/Eigen/LU +50 -0
- data/vendor/eigen/Eigen/MetisSupport +35 -0
- data/vendor/eigen/Eigen/OrderingMethods +73 -0
- data/vendor/eigen/Eigen/PaStiXSupport +48 -0
- data/vendor/eigen/Eigen/PardisoSupport +35 -0
- data/vendor/eigen/Eigen/QR +51 -0
- data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
- data/vendor/eigen/Eigen/SPQRSupport +34 -0
- data/vendor/eigen/Eigen/SVD +51 -0
- data/vendor/eigen/Eigen/Sparse +36 -0
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- data/vendor/eigen/Eigen/SparseCore +69 -0
- data/vendor/eigen/Eigen/SparseLU +46 -0
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- data/vendor/eigen/Eigen/SuperLUSupport +64 -0
- data/vendor/eigen/Eigen/UmfPackSupport +40 -0
- data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
- data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
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- data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
- data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
- data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
- data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
- data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
- data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
- data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
- data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
- data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
- data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
- data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
- data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
- data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
- data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
- data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
- data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
- data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
- data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
- data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
- data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
- data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
- data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
- data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
- data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
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- data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
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- data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
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- data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
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- data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
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- data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
- data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
- data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
- data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
- data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
- data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
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- data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
- data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
- data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
- data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
- data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
- data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
- data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
- data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
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- data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
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- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
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- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
- data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
- data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +126 -0
- data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
- data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
- data/vendor/eigen/Eigen/src/StlSupport/details.h +84 -0
- data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
- data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
- data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
- data/vendor/eigen/Eigen/src/misc/Kernel.h +79 -0
- data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
- data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
- data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
- data/vendor/eigen/Eigen/src/misc/lapacke.h +16291 -0
- data/vendor/eigen/Eigen/src/misc/lapacke_mangling.h +17 -0
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +332 -0
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
- data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
- data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
- data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +163 -0
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
- data/vendor/eigen/README.md +3 -0
- data/vendor/eigen/bench/README.txt +55 -0
- data/vendor/eigen/bench/btl/COPYING +340 -0
- data/vendor/eigen/bench/btl/README +154 -0
- data/vendor/eigen/bench/tensors/README +21 -0
- data/vendor/eigen/blas/README.txt +6 -0
- data/vendor/eigen/demos/mandelbrot/README +10 -0
- data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
- data/vendor/eigen/demos/opengl/README +13 -0
- data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
- data/vendor/eigen/unsupported/README.txt +50 -0
- data/vendor/tomotopy/LICENSE +21 -0
- data/vendor/tomotopy/README.kr.rst +375 -0
- data/vendor/tomotopy/README.rst +382 -0
- data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
- data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
- data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
- data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
- data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
- data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
- data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
- data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
- data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
- data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
- data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
- data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
- data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
- data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
- data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
- data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
- data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
- data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
- data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
- data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
- data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
- data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
- data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
- data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
- data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
- data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
- data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
- data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
- data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
- data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
- data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
- data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
- data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
- data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
- data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
- data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
- data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
- data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
- data/vendor/tomotopy/src/Utils/AliasMethod.hpp +169 -0
- data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
- data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
- data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
- data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
- data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
- data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
- data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
- data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
- data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
- data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
- data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
- data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
- data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
- data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
- data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
- data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
- data/vendor/tomotopy/src/Utils/exception.h +28 -0
- data/vendor/tomotopy/src/Utils/math.h +281 -0
- data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
- data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
- data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
- data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
- data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
- data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
- data/vendor/tomotopy/src/Utils/text.hpp +49 -0
- data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
- metadata +531 -0
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// This file is part of Eigen, a lightweight C++ template library
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// for linear algebra.
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//
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// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
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//
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// This Source Code Form is subject to the terms of the Mozilla
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// Public License v. 2.0. If a copy of the MPL was not distributed
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// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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#ifndef EIGEN_TRANSLATION_H
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#define EIGEN_TRANSLATION_H
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namespace Eigen {
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/** \geometry_module \ingroup Geometry_Module
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*
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* \class Translation
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*
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* \brief Represents a translation transformation
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*
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* \tparam _Scalar the scalar type, i.e., the type of the coefficients.
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* \tparam _Dim the dimension of the space, can be a compile time value or Dynamic
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*
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* \note This class is not aimed to be used to store a translation transformation,
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* but rather to make easier the constructions and updates of Transform objects.
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*
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* \sa class Scaling, class Transform
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*/
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template<typename _Scalar, int _Dim>
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class Translation
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{
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public:
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EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF_VECTORIZABLE_FIXED_SIZE(_Scalar,_Dim)
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/** dimension of the space */
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enum { Dim = _Dim };
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/** the scalar type of the coefficients */
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typedef _Scalar Scalar;
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/** corresponding vector type */
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typedef Matrix<Scalar,Dim,1> VectorType;
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/** corresponding linear transformation matrix type */
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typedef Matrix<Scalar,Dim,Dim> LinearMatrixType;
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/** corresponding affine transformation type */
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typedef Transform<Scalar,Dim,Affine> AffineTransformType;
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/** corresponding isometric transformation type */
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typedef Transform<Scalar,Dim,Isometry> IsometryTransformType;
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protected:
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VectorType m_coeffs;
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public:
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/** Default constructor without initialization. */
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EIGEN_DEVICE_FUNC Translation() {}
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/** */
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EIGEN_DEVICE_FUNC inline Translation(const Scalar& sx, const Scalar& sy)
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{
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eigen_assert(Dim==2);
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m_coeffs.x() = sx;
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m_coeffs.y() = sy;
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}
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/** */
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EIGEN_DEVICE_FUNC inline Translation(const Scalar& sx, const Scalar& sy, const Scalar& sz)
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{
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eigen_assert(Dim==3);
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m_coeffs.x() = sx;
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m_coeffs.y() = sy;
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m_coeffs.z() = sz;
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}
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/** Constructs and initialize the translation transformation from a vector of translation coefficients */
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EIGEN_DEVICE_FUNC explicit inline Translation(const VectorType& vector) : m_coeffs(vector) {}
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/** \brief Retruns the x-translation by value. **/
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EIGEN_DEVICE_FUNC inline Scalar x() const { return m_coeffs.x(); }
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/** \brief Retruns the y-translation by value. **/
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EIGEN_DEVICE_FUNC inline Scalar y() const { return m_coeffs.y(); }
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/** \brief Retruns the z-translation by value. **/
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EIGEN_DEVICE_FUNC inline Scalar z() const { return m_coeffs.z(); }
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/** \brief Retruns the x-translation as a reference. **/
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EIGEN_DEVICE_FUNC inline Scalar& x() { return m_coeffs.x(); }
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/** \brief Retruns the y-translation as a reference. **/
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EIGEN_DEVICE_FUNC inline Scalar& y() { return m_coeffs.y(); }
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/** \brief Retruns the z-translation as a reference. **/
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EIGEN_DEVICE_FUNC inline Scalar& z() { return m_coeffs.z(); }
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EIGEN_DEVICE_FUNC const VectorType& vector() const { return m_coeffs; }
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EIGEN_DEVICE_FUNC VectorType& vector() { return m_coeffs; }
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EIGEN_DEVICE_FUNC const VectorType& translation() const { return m_coeffs; }
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EIGEN_DEVICE_FUNC VectorType& translation() { return m_coeffs; }
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/** Concatenates two translation */
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EIGEN_DEVICE_FUNC inline Translation operator* (const Translation& other) const
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{ return Translation(m_coeffs + other.m_coeffs); }
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/** Concatenates a translation and a uniform scaling */
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EIGEN_DEVICE_FUNC inline AffineTransformType operator* (const UniformScaling<Scalar>& other) const;
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/** Concatenates a translation and a linear transformation */
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template<typename OtherDerived>
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EIGEN_DEVICE_FUNC inline AffineTransformType operator* (const EigenBase<OtherDerived>& linear) const;
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/** Concatenates a translation and a rotation */
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template<typename Derived>
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EIGEN_DEVICE_FUNC inline IsometryTransformType operator*(const RotationBase<Derived,Dim>& r) const
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{ return *this * IsometryTransformType(r); }
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/** \returns the concatenation of a linear transformation \a l with the translation \a t */
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// its a nightmare to define a templated friend function outside its declaration
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template<typename OtherDerived> friend
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EIGEN_DEVICE_FUNC inline AffineTransformType operator*(const EigenBase<OtherDerived>& linear, const Translation& t)
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{
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AffineTransformType res;
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res.matrix().setZero();
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res.linear() = linear.derived();
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res.translation() = linear.derived() * t.m_coeffs;
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res.matrix().row(Dim).setZero();
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res(Dim,Dim) = Scalar(1);
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return res;
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}
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/** Concatenates a translation and a transformation */
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template<int Mode, int Options>
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EIGEN_DEVICE_FUNC inline Transform<Scalar,Dim,Mode> operator* (const Transform<Scalar,Dim,Mode,Options>& t) const
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{
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Transform<Scalar,Dim,Mode> res = t;
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res.pretranslate(m_coeffs);
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return res;
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}
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/** Applies translation to vector */
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template<typename Derived>
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inline typename internal::enable_if<Derived::IsVectorAtCompileTime,VectorType>::type
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operator* (const MatrixBase<Derived>& vec) const
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{ return m_coeffs + vec.derived(); }
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/** \returns the inverse translation (opposite) */
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Translation inverse() const { return Translation(-m_coeffs); }
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Translation& operator=(const Translation& other)
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{
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m_coeffs = other.m_coeffs;
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return *this;
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}
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static const Translation Identity() { return Translation(VectorType::Zero()); }
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/** \returns \c *this with scalar type casted to \a NewScalarType
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*
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* Note that if \a NewScalarType is equal to the current scalar type of \c *this
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* then this function smartly returns a const reference to \c *this.
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*/
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template<typename NewScalarType>
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EIGEN_DEVICE_FUNC inline typename internal::cast_return_type<Translation,Translation<NewScalarType,Dim> >::type cast() const
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{ return typename internal::cast_return_type<Translation,Translation<NewScalarType,Dim> >::type(*this); }
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/** Copy constructor with scalar type conversion */
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template<typename OtherScalarType>
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EIGEN_DEVICE_FUNC inline explicit Translation(const Translation<OtherScalarType,Dim>& other)
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{ m_coeffs = other.vector().template cast<Scalar>(); }
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/** \returns \c true if \c *this is approximately equal to \a other, within the precision
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* determined by \a prec.
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*
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* \sa MatrixBase::isApprox() */
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EIGEN_DEVICE_FUNC bool isApprox(const Translation& other, const typename NumTraits<Scalar>::Real& prec = NumTraits<Scalar>::dummy_precision()) const
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{ return m_coeffs.isApprox(other.m_coeffs, prec); }
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};
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/** \addtogroup Geometry_Module */
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//@{
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typedef Translation<float, 2> Translation2f;
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typedef Translation<double,2> Translation2d;
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typedef Translation<float, 3> Translation3f;
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typedef Translation<double,3> Translation3d;
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//@}
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template<typename Scalar, int Dim>
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EIGEN_DEVICE_FUNC inline typename Translation<Scalar,Dim>::AffineTransformType
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Translation<Scalar,Dim>::operator* (const UniformScaling<Scalar>& other) const
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{
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AffineTransformType res;
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res.matrix().setZero();
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res.linear().diagonal().fill(other.factor());
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res.translation() = m_coeffs;
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res(Dim,Dim) = Scalar(1);
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return res;
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}
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template<typename Scalar, int Dim>
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template<typename OtherDerived>
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EIGEN_DEVICE_FUNC inline typename Translation<Scalar,Dim>::AffineTransformType
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Translation<Scalar,Dim>::operator* (const EigenBase<OtherDerived>& linear) const
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{
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AffineTransformType res;
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res.matrix().setZero();
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res.linear() = linear.derived();
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res.translation() = m_coeffs;
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res.matrix().row(Dim).setZero();
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res(Dim,Dim) = Scalar(1);
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return res;
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}
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} // end namespace Eigen
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#endif // EIGEN_TRANSLATION_H
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// This file is part of Eigen, a lightweight C++ template library
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// for linear algebra.
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//
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// Copyright (C) 2009 Hauke Heibel <hauke.heibel@gmail.com>
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//
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// This Source Code Form is subject to the terms of the Mozilla
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// Public License v. 2.0. If a copy of the MPL was not distributed
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// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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#ifndef EIGEN_UMEYAMA_H
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#define EIGEN_UMEYAMA_H
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// This file requires the user to include
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// * Eigen/Core
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// * Eigen/LU
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// * Eigen/SVD
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// * Eigen/Array
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+
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namespace Eigen {
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+
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#ifndef EIGEN_PARSED_BY_DOXYGEN
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+
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23
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// These helpers are required since it allows to use mixed types as parameters
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+
// for the Umeyama. The problem with mixed parameters is that the return type
|
25
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+
// cannot trivially be deduced when float and double types are mixed.
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+
namespace internal {
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+
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// Compile time return type deduction for different MatrixBase types.
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// Different means here different alignment and parameters but the same underlying
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// real scalar type.
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+
template<typename MatrixType, typename OtherMatrixType>
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struct umeyama_transform_matrix_type
|
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{
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34
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+
enum {
|
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MinRowsAtCompileTime = EIGEN_SIZE_MIN_PREFER_DYNAMIC(MatrixType::RowsAtCompileTime, OtherMatrixType::RowsAtCompileTime),
|
36
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+
|
37
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+
// When possible we want to choose some small fixed size value since the result
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38
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+
// is likely to fit on the stack. So here, EIGEN_SIZE_MIN_PREFER_DYNAMIC is not what we want.
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+
HomogeneousDimension = int(MinRowsAtCompileTime) == Dynamic ? Dynamic : int(MinRowsAtCompileTime)+1
|
40
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+
};
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41
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+
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42
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+
typedef Matrix<typename traits<MatrixType>::Scalar,
|
43
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+
HomogeneousDimension,
|
44
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+
HomogeneousDimension,
|
45
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+
AutoAlign | (traits<MatrixType>::Flags & RowMajorBit ? RowMajor : ColMajor),
|
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+
HomogeneousDimension,
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+
HomogeneousDimension
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+
> type;
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};
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+
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}
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+
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#endif
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+
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/**
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* \geometry_module \ingroup Geometry_Module
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*
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* \brief Returns the transformation between two point sets.
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*
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* The algorithm is based on:
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* "Least-squares estimation of transformation parameters between two point patterns",
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* Shinji Umeyama, PAMI 1991, DOI: 10.1109/34.88573
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63
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*
|
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* It estimates parameters \f$ c, \mathbf{R}, \f$ and \f$ \mathbf{t} \f$ such that
|
65
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+
* \f{align*}
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* \frac{1}{n} \sum_{i=1}^n \vert\vert y_i - (c\mathbf{R}x_i + \mathbf{t}) \vert\vert_2^2
|
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+
* \f}
|
68
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+
* is minimized.
|
69
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+
*
|
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* The algorithm is based on the analysis of the covariance matrix
|
71
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+
* \f$ \Sigma_{\mathbf{x}\mathbf{y}} \in \mathbb{R}^{d \times d} \f$
|
72
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+
* of the input point sets \f$ \mathbf{x} \f$ and \f$ \mathbf{y} \f$ where
|
73
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+
* \f$d\f$ is corresponding to the dimension (which is typically small).
|
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+
* The analysis is involving the SVD having a complexity of \f$O(d^3)\f$
|
75
|
+
* though the actual computational effort lies in the covariance
|
76
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+
* matrix computation which has an asymptotic lower bound of \f$O(dm)\f$ when
|
77
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+
* the input point sets have dimension \f$d \times m\f$.
|
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|
+
*
|
79
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+
* Currently the method is working only for floating point matrices.
|
80
|
+
*
|
81
|
+
* \todo Should the return type of umeyama() become a Transform?
|
82
|
+
*
|
83
|
+
* \param src Source points \f$ \mathbf{x} = \left( x_1, \hdots, x_n \right) \f$.
|
84
|
+
* \param dst Destination points \f$ \mathbf{y} = \left( y_1, \hdots, y_n \right) \f$.
|
85
|
+
* \param with_scaling Sets \f$ c=1 \f$ when <code>false</code> is passed.
|
86
|
+
* \return The homogeneous transformation
|
87
|
+
* \f{align*}
|
88
|
+
* T = \begin{bmatrix} c\mathbf{R} & \mathbf{t} \\ \mathbf{0} & 1 \end{bmatrix}
|
89
|
+
* \f}
|
90
|
+
* minimizing the resudiual above. This transformation is always returned as an
|
91
|
+
* Eigen::Matrix.
|
92
|
+
*/
|
93
|
+
template <typename Derived, typename OtherDerived>
|
94
|
+
typename internal::umeyama_transform_matrix_type<Derived, OtherDerived>::type
|
95
|
+
umeyama(const MatrixBase<Derived>& src, const MatrixBase<OtherDerived>& dst, bool with_scaling = true)
|
96
|
+
{
|
97
|
+
typedef typename internal::umeyama_transform_matrix_type<Derived, OtherDerived>::type TransformationMatrixType;
|
98
|
+
typedef typename internal::traits<TransformationMatrixType>::Scalar Scalar;
|
99
|
+
typedef typename NumTraits<Scalar>::Real RealScalar;
|
100
|
+
|
101
|
+
EIGEN_STATIC_ASSERT(!NumTraits<Scalar>::IsComplex, NUMERIC_TYPE_MUST_BE_REAL)
|
102
|
+
EIGEN_STATIC_ASSERT((internal::is_same<Scalar, typename internal::traits<OtherDerived>::Scalar>::value),
|
103
|
+
YOU_MIXED_DIFFERENT_NUMERIC_TYPES__YOU_NEED_TO_USE_THE_CAST_METHOD_OF_MATRIXBASE_TO_CAST_NUMERIC_TYPES_EXPLICITLY)
|
104
|
+
|
105
|
+
enum { Dimension = EIGEN_SIZE_MIN_PREFER_DYNAMIC(Derived::RowsAtCompileTime, OtherDerived::RowsAtCompileTime) };
|
106
|
+
|
107
|
+
typedef Matrix<Scalar, Dimension, 1> VectorType;
|
108
|
+
typedef Matrix<Scalar, Dimension, Dimension> MatrixType;
|
109
|
+
typedef typename internal::plain_matrix_type_row_major<Derived>::type RowMajorMatrixType;
|
110
|
+
|
111
|
+
const Index m = src.rows(); // dimension
|
112
|
+
const Index n = src.cols(); // number of measurements
|
113
|
+
|
114
|
+
// required for demeaning ...
|
115
|
+
const RealScalar one_over_n = RealScalar(1) / static_cast<RealScalar>(n);
|
116
|
+
|
117
|
+
// computation of mean
|
118
|
+
const VectorType src_mean = src.rowwise().sum() * one_over_n;
|
119
|
+
const VectorType dst_mean = dst.rowwise().sum() * one_over_n;
|
120
|
+
|
121
|
+
// demeaning of src and dst points
|
122
|
+
const RowMajorMatrixType src_demean = src.colwise() - src_mean;
|
123
|
+
const RowMajorMatrixType dst_demean = dst.colwise() - dst_mean;
|
124
|
+
|
125
|
+
// Eq. (36)-(37)
|
126
|
+
const Scalar src_var = src_demean.rowwise().squaredNorm().sum() * one_over_n;
|
127
|
+
|
128
|
+
// Eq. (38)
|
129
|
+
const MatrixType sigma = one_over_n * dst_demean * src_demean.transpose();
|
130
|
+
|
131
|
+
JacobiSVD<MatrixType> svd(sigma, ComputeFullU | ComputeFullV);
|
132
|
+
|
133
|
+
// Initialize the resulting transformation with an identity matrix...
|
134
|
+
TransformationMatrixType Rt = TransformationMatrixType::Identity(m+1,m+1);
|
135
|
+
|
136
|
+
// Eq. (39)
|
137
|
+
VectorType S = VectorType::Ones(m);
|
138
|
+
|
139
|
+
if ( svd.matrixU().determinant() * svd.matrixV().determinant() < 0 )
|
140
|
+
S(m-1) = -1;
|
141
|
+
|
142
|
+
// Eq. (40) and (43)
|
143
|
+
Rt.block(0,0,m,m).noalias() = svd.matrixU() * S.asDiagonal() * svd.matrixV().transpose();
|
144
|
+
|
145
|
+
if (with_scaling)
|
146
|
+
{
|
147
|
+
// Eq. (42)
|
148
|
+
const Scalar c = Scalar(1)/src_var * svd.singularValues().dot(S);
|
149
|
+
|
150
|
+
// Eq. (41)
|
151
|
+
Rt.col(m).head(m) = dst_mean;
|
152
|
+
Rt.col(m).head(m).noalias() -= c*Rt.topLeftCorner(m,m)*src_mean;
|
153
|
+
Rt.block(0,0,m,m) *= c;
|
154
|
+
}
|
155
|
+
else
|
156
|
+
{
|
157
|
+
Rt.col(m).head(m) = dst_mean;
|
158
|
+
Rt.col(m).head(m).noalias() -= Rt.topLeftCorner(m,m)*src_mean;
|
159
|
+
}
|
160
|
+
|
161
|
+
return Rt;
|
162
|
+
}
|
163
|
+
|
164
|
+
} // end namespace Eigen
|
165
|
+
|
166
|
+
#endif // EIGEN_UMEYAMA_H
|
@@ -0,0 +1,161 @@
|
|
1
|
+
// This file is part of Eigen, a lightweight C++ template library
|
2
|
+
// for linear algebra.
|
3
|
+
//
|
4
|
+
// Copyright (C) 2009 Rohit Garg <rpg.314@gmail.com>
|
5
|
+
// Copyright (C) 2009-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
|
6
|
+
//
|
7
|
+
// This Source Code Form is subject to the terms of the Mozilla
|
8
|
+
// Public License v. 2.0. If a copy of the MPL was not distributed
|
9
|
+
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
|
10
|
+
|
11
|
+
#ifndef EIGEN_GEOMETRY_SSE_H
|
12
|
+
#define EIGEN_GEOMETRY_SSE_H
|
13
|
+
|
14
|
+
namespace Eigen {
|
15
|
+
|
16
|
+
namespace internal {
|
17
|
+
|
18
|
+
template<class Derived, class OtherDerived>
|
19
|
+
struct quat_product<Architecture::SSE, Derived, OtherDerived, float>
|
20
|
+
{
|
21
|
+
enum {
|
22
|
+
AAlignment = traits<Derived>::Alignment,
|
23
|
+
BAlignment = traits<OtherDerived>::Alignment,
|
24
|
+
ResAlignment = traits<Quaternion<float> >::Alignment
|
25
|
+
};
|
26
|
+
static inline Quaternion<float> run(const QuaternionBase<Derived>& _a, const QuaternionBase<OtherDerived>& _b)
|
27
|
+
{
|
28
|
+
Quaternion<float> res;
|
29
|
+
const __m128 mask = _mm_setr_ps(0.f,0.f,0.f,-0.f);
|
30
|
+
__m128 a = _a.coeffs().template packet<AAlignment>(0);
|
31
|
+
__m128 b = _b.coeffs().template packet<BAlignment>(0);
|
32
|
+
__m128 s1 = _mm_mul_ps(vec4f_swizzle1(a,1,2,0,2),vec4f_swizzle1(b,2,0,1,2));
|
33
|
+
__m128 s2 = _mm_mul_ps(vec4f_swizzle1(a,3,3,3,1),vec4f_swizzle1(b,0,1,2,1));
|
34
|
+
pstoret<float,Packet4f,ResAlignment>(
|
35
|
+
&res.x(),
|
36
|
+
_mm_add_ps(_mm_sub_ps(_mm_mul_ps(a,vec4f_swizzle1(b,3,3,3,3)),
|
37
|
+
_mm_mul_ps(vec4f_swizzle1(a,2,0,1,0),
|
38
|
+
vec4f_swizzle1(b,1,2,0,0))),
|
39
|
+
_mm_xor_ps(mask,_mm_add_ps(s1,s2))));
|
40
|
+
|
41
|
+
return res;
|
42
|
+
}
|
43
|
+
};
|
44
|
+
|
45
|
+
template<class Derived>
|
46
|
+
struct quat_conj<Architecture::SSE, Derived, float>
|
47
|
+
{
|
48
|
+
enum {
|
49
|
+
ResAlignment = traits<Quaternion<float> >::Alignment
|
50
|
+
};
|
51
|
+
static inline Quaternion<float> run(const QuaternionBase<Derived>& q)
|
52
|
+
{
|
53
|
+
Quaternion<float> res;
|
54
|
+
const __m128 mask = _mm_setr_ps(-0.f,-0.f,-0.f,0.f);
|
55
|
+
pstoret<float,Packet4f,ResAlignment>(&res.x(), _mm_xor_ps(mask, q.coeffs().template packet<traits<Derived>::Alignment>(0)));
|
56
|
+
return res;
|
57
|
+
}
|
58
|
+
};
|
59
|
+
|
60
|
+
|
61
|
+
template<typename VectorLhs,typename VectorRhs>
|
62
|
+
struct cross3_impl<Architecture::SSE,VectorLhs,VectorRhs,float,true>
|
63
|
+
{
|
64
|
+
enum {
|
65
|
+
ResAlignment = traits<typename plain_matrix_type<VectorLhs>::type>::Alignment
|
66
|
+
};
|
67
|
+
static inline typename plain_matrix_type<VectorLhs>::type
|
68
|
+
run(const VectorLhs& lhs, const VectorRhs& rhs)
|
69
|
+
{
|
70
|
+
__m128 a = lhs.template packet<traits<VectorLhs>::Alignment>(0);
|
71
|
+
__m128 b = rhs.template packet<traits<VectorRhs>::Alignment>(0);
|
72
|
+
__m128 mul1=_mm_mul_ps(vec4f_swizzle1(a,1,2,0,3),vec4f_swizzle1(b,2,0,1,3));
|
73
|
+
__m128 mul2=_mm_mul_ps(vec4f_swizzle1(a,2,0,1,3),vec4f_swizzle1(b,1,2,0,3));
|
74
|
+
typename plain_matrix_type<VectorLhs>::type res;
|
75
|
+
pstoret<float,Packet4f,ResAlignment>(&res.x(),_mm_sub_ps(mul1,mul2));
|
76
|
+
return res;
|
77
|
+
}
|
78
|
+
};
|
79
|
+
|
80
|
+
|
81
|
+
|
82
|
+
|
83
|
+
template<class Derived, class OtherDerived>
|
84
|
+
struct quat_product<Architecture::SSE, Derived, OtherDerived, double>
|
85
|
+
{
|
86
|
+
enum {
|
87
|
+
BAlignment = traits<OtherDerived>::Alignment,
|
88
|
+
ResAlignment = traits<Quaternion<double> >::Alignment
|
89
|
+
};
|
90
|
+
|
91
|
+
static inline Quaternion<double> run(const QuaternionBase<Derived>& _a, const QuaternionBase<OtherDerived>& _b)
|
92
|
+
{
|
93
|
+
const Packet2d mask = _mm_castsi128_pd(_mm_set_epi32(0x0,0x0,0x80000000,0x0));
|
94
|
+
|
95
|
+
Quaternion<double> res;
|
96
|
+
|
97
|
+
const double* a = _a.coeffs().data();
|
98
|
+
Packet2d b_xy = _b.coeffs().template packet<BAlignment>(0);
|
99
|
+
Packet2d b_zw = _b.coeffs().template packet<BAlignment>(2);
|
100
|
+
Packet2d a_xx = pset1<Packet2d>(a[0]);
|
101
|
+
Packet2d a_yy = pset1<Packet2d>(a[1]);
|
102
|
+
Packet2d a_zz = pset1<Packet2d>(a[2]);
|
103
|
+
Packet2d a_ww = pset1<Packet2d>(a[3]);
|
104
|
+
|
105
|
+
// two temporaries:
|
106
|
+
Packet2d t1, t2;
|
107
|
+
|
108
|
+
/*
|
109
|
+
* t1 = ww*xy + yy*zw
|
110
|
+
* t2 = zz*xy - xx*zw
|
111
|
+
* res.xy = t1 +/- swap(t2)
|
112
|
+
*/
|
113
|
+
t1 = padd(pmul(a_ww, b_xy), pmul(a_yy, b_zw));
|
114
|
+
t2 = psub(pmul(a_zz, b_xy), pmul(a_xx, b_zw));
|
115
|
+
#ifdef EIGEN_VECTORIZE_SSE3
|
116
|
+
EIGEN_UNUSED_VARIABLE(mask)
|
117
|
+
pstoret<double,Packet2d,ResAlignment>(&res.x(), _mm_addsub_pd(t1, preverse(t2)));
|
118
|
+
#else
|
119
|
+
pstoret<double,Packet2d,ResAlignment>(&res.x(), padd(t1, pxor(mask,preverse(t2))));
|
120
|
+
#endif
|
121
|
+
|
122
|
+
/*
|
123
|
+
* t1 = ww*zw - yy*xy
|
124
|
+
* t2 = zz*zw + xx*xy
|
125
|
+
* res.zw = t1 -/+ swap(t2) = swap( swap(t1) +/- t2)
|
126
|
+
*/
|
127
|
+
t1 = psub(pmul(a_ww, b_zw), pmul(a_yy, b_xy));
|
128
|
+
t2 = padd(pmul(a_zz, b_zw), pmul(a_xx, b_xy));
|
129
|
+
#ifdef EIGEN_VECTORIZE_SSE3
|
130
|
+
EIGEN_UNUSED_VARIABLE(mask)
|
131
|
+
pstoret<double,Packet2d,ResAlignment>(&res.z(), preverse(_mm_addsub_pd(preverse(t1), t2)));
|
132
|
+
#else
|
133
|
+
pstoret<double,Packet2d,ResAlignment>(&res.z(), psub(t1, pxor(mask,preverse(t2))));
|
134
|
+
#endif
|
135
|
+
|
136
|
+
return res;
|
137
|
+
}
|
138
|
+
};
|
139
|
+
|
140
|
+
template<class Derived>
|
141
|
+
struct quat_conj<Architecture::SSE, Derived, double>
|
142
|
+
{
|
143
|
+
enum {
|
144
|
+
ResAlignment = traits<Quaternion<double> >::Alignment
|
145
|
+
};
|
146
|
+
static inline Quaternion<double> run(const QuaternionBase<Derived>& q)
|
147
|
+
{
|
148
|
+
Quaternion<double> res;
|
149
|
+
const __m128d mask0 = _mm_setr_pd(-0.,-0.);
|
150
|
+
const __m128d mask2 = _mm_setr_pd(-0.,0.);
|
151
|
+
pstoret<double,Packet2d,ResAlignment>(&res.x(), _mm_xor_pd(mask0, q.coeffs().template packet<traits<Derived>::Alignment>(0)));
|
152
|
+
pstoret<double,Packet2d,ResAlignment>(&res.z(), _mm_xor_pd(mask2, q.coeffs().template packet<traits<Derived>::Alignment>(2)));
|
153
|
+
return res;
|
154
|
+
}
|
155
|
+
};
|
156
|
+
|
157
|
+
} // end namespace internal
|
158
|
+
|
159
|
+
} // end namespace Eigen
|
160
|
+
|
161
|
+
#endif // EIGEN_GEOMETRY_SSE_H
|