tomoto 0.1.0

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Files changed (420) hide show
  1. checksums.yaml +7 -0
  2. data/CHANGELOG.md +3 -0
  3. data/LICENSE.txt +22 -0
  4. data/README.md +123 -0
  5. data/ext/tomoto/ext.cpp +245 -0
  6. data/ext/tomoto/extconf.rb +28 -0
  7. data/lib/tomoto.rb +12 -0
  8. data/lib/tomoto/ct.rb +11 -0
  9. data/lib/tomoto/hdp.rb +11 -0
  10. data/lib/tomoto/lda.rb +67 -0
  11. data/lib/tomoto/version.rb +3 -0
  12. data/vendor/EigenRand/EigenRand/Core.h +1139 -0
  13. data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
  14. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
  15. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
  16. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
  17. data/vendor/EigenRand/EigenRand/EigenRand +19 -0
  18. data/vendor/EigenRand/EigenRand/Macro.h +24 -0
  19. data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
  20. data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
  21. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
  22. data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
  23. data/vendor/EigenRand/EigenRand/doc.h +220 -0
  24. data/vendor/EigenRand/LICENSE +21 -0
  25. data/vendor/EigenRand/README.md +288 -0
  26. data/vendor/eigen/COPYING.BSD +26 -0
  27. data/vendor/eigen/COPYING.GPL +674 -0
  28. data/vendor/eigen/COPYING.LGPL +502 -0
  29. data/vendor/eigen/COPYING.MINPACK +52 -0
  30. data/vendor/eigen/COPYING.MPL2 +373 -0
  31. data/vendor/eigen/COPYING.README +18 -0
  32. data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
  33. data/vendor/eigen/Eigen/Cholesky +46 -0
  34. data/vendor/eigen/Eigen/CholmodSupport +48 -0
  35. data/vendor/eigen/Eigen/Core +537 -0
  36. data/vendor/eigen/Eigen/Dense +7 -0
  37. data/vendor/eigen/Eigen/Eigen +2 -0
  38. data/vendor/eigen/Eigen/Eigenvalues +61 -0
  39. data/vendor/eigen/Eigen/Geometry +62 -0
  40. data/vendor/eigen/Eigen/Householder +30 -0
  41. data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
  42. data/vendor/eigen/Eigen/Jacobi +33 -0
  43. data/vendor/eigen/Eigen/LU +50 -0
  44. data/vendor/eigen/Eigen/MetisSupport +35 -0
  45. data/vendor/eigen/Eigen/OrderingMethods +73 -0
  46. data/vendor/eigen/Eigen/PaStiXSupport +48 -0
  47. data/vendor/eigen/Eigen/PardisoSupport +35 -0
  48. data/vendor/eigen/Eigen/QR +51 -0
  49. data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
  50. data/vendor/eigen/Eigen/SPQRSupport +34 -0
  51. data/vendor/eigen/Eigen/SVD +51 -0
  52. data/vendor/eigen/Eigen/Sparse +36 -0
  53. data/vendor/eigen/Eigen/SparseCholesky +45 -0
  54. data/vendor/eigen/Eigen/SparseCore +69 -0
  55. data/vendor/eigen/Eigen/SparseLU +46 -0
  56. data/vendor/eigen/Eigen/SparseQR +37 -0
  57. data/vendor/eigen/Eigen/StdDeque +27 -0
  58. data/vendor/eigen/Eigen/StdList +26 -0
  59. data/vendor/eigen/Eigen/StdVector +27 -0
  60. data/vendor/eigen/Eigen/SuperLUSupport +64 -0
  61. data/vendor/eigen/Eigen/UmfPackSupport +40 -0
  62. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
  63. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
  64. data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  65. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
  66. data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
  67. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
  68. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
  69. data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
  70. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
  71. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
  72. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
  73. data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
  74. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
  75. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
  76. data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
  77. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
  78. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
  79. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
  80. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
  81. data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  82. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
  84. data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
  85. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
  86. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
  87. data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
  88. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
  89. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
  90. data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
  91. data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
  92. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  93. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
  94. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
  95. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
  96. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
  97. data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
  98. data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
  99. data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
  100. data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
  101. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
  102. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
  103. data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
  104. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
  105. data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
  106. data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
  107. data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
  108. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
  109. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
  110. data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
  111. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
  112. data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
  113. data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
  114. data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
  115. data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
  116. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
  117. data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
  118. data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
  119. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
  120. data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  121. data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
  122. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
  123. data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
  124. data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
  125. data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
  126. data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
  127. data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
  128. data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
  129. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
  130. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
  131. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
  132. data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
  133. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
  134. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
  135. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
  136. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
  137. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
  138. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
  139. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
  140. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
  141. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
  142. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
  143. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
  145. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
  146. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
  148. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
  149. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
  153. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
  154. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
  156. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
  160. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
  161. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
  162. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
  163. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
  164. data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  165. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
  166. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
  167. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
  168. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
  169. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  170. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
  171. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
  172. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  173. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
  174. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
  175. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
  176. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
  177. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  178. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  179. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  180. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
  181. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
  182. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  183. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  184. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
  185. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
  186. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
  187. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
  188. data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
  189. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
  190. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  191. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
  192. data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
  193. data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
  194. data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
  195. data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
  196. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
  197. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
  198. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
  199. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  200. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
  201. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  202. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  203. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  204. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  205. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  206. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  207. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
  208. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
  209. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  210. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
  211. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  212. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
  213. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
  214. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
  215. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
  216. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
  217. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
  218. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
  219. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  220. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
  221. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
  222. data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
  223. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
  224. data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
  225. data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
  226. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
  227. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
  228. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
  229. data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
  230. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
  231. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  232. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
  233. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
  234. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
  235. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
  236. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
  237. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
  238. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
  239. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
  240. data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
  241. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
  242. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
  243. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
  244. data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  245. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
  246. data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  247. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
  248. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
  249. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
  250. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  251. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
  252. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
  253. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  254. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
  255. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
  256. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
  257. data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  258. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
  259. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
  260. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
  261. data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  262. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
  263. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  264. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
  265. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  266. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
  267. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
  268. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  269. data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  270. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
  271. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
  272. data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  273. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
  274. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
  275. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
  276. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
  277. data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  278. data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
  279. data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  280. data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
  281. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
  282. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
  283. data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  284. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
  285. data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
  295. data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  296. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
  297. data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  298. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  299. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  300. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  307. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  308. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  309. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  310. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  311. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  312. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  313. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
  314. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +126 -0
  315. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
  316. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
  317. data/vendor/eigen/Eigen/src/StlSupport/details.h +84 -0
  318. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
  319. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
  320. data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
  321. data/vendor/eigen/Eigen/src/misc/Kernel.h +79 -0
  322. data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
  323. data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
  324. data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
  325. data/vendor/eigen/Eigen/src/misc/lapacke.h +16291 -0
  326. data/vendor/eigen/Eigen/src/misc/lapacke_mangling.h +17 -0
  327. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +332 -0
  328. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
  329. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
  330. data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  331. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +163 -0
  332. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  333. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
  334. data/vendor/eigen/README.md +3 -0
  335. data/vendor/eigen/bench/README.txt +55 -0
  336. data/vendor/eigen/bench/btl/COPYING +340 -0
  337. data/vendor/eigen/bench/btl/README +154 -0
  338. data/vendor/eigen/bench/tensors/README +21 -0
  339. data/vendor/eigen/blas/README.txt +6 -0
  340. data/vendor/eigen/demos/mandelbrot/README +10 -0
  341. data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
  342. data/vendor/eigen/demos/opengl/README +13 -0
  343. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
  344. data/vendor/eigen/unsupported/README.txt +50 -0
  345. data/vendor/tomotopy/LICENSE +21 -0
  346. data/vendor/tomotopy/README.kr.rst +375 -0
  347. data/vendor/tomotopy/README.rst +382 -0
  348. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
  349. data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
  350. data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
  351. data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
  352. data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
  353. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
  354. data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
  355. data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
  356. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
  357. data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
  358. data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
  359. data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
  360. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
  361. data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
  362. data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
  363. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
  364. data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
  365. data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
  366. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
  367. data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
  368. data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
  369. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
  370. data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
  371. data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
  372. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
  373. data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
  374. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
  375. data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
  376. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
  377. data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
  378. data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
  379. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
  380. data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
  381. data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
  382. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
  383. data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
  384. data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
  385. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
  386. data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
  387. data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
  388. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
  389. data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
  390. data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
  391. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
  392. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
  393. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +169 -0
  394. data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
  395. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
  396. data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
  397. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
  398. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
  399. data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
  400. data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
  401. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
  402. data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
  403. data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
  404. data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
  405. data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
  406. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
  407. data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
  408. data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
  409. data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
  410. data/vendor/tomotopy/src/Utils/exception.h +28 -0
  411. data/vendor/tomotopy/src/Utils/math.h +281 -0
  412. data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
  413. data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
  414. data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
  415. data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
  416. data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
  417. data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
  418. data/vendor/tomotopy/src/Utils/text.hpp +49 -0
  419. data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
  420. metadata +531 -0
@@ -0,0 +1,562 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2007 Julien Pommier
5
+ // Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ /* The sin, cos, exp, and log functions of this file come from
12
+ * Julien Pommier's sse math library: http://gruntthepeon.free.fr/ssemath/
13
+ */
14
+
15
+ #ifndef EIGEN_MATH_FUNCTIONS_SSE_H
16
+ #define EIGEN_MATH_FUNCTIONS_SSE_H
17
+
18
+ namespace Eigen {
19
+
20
+ namespace internal {
21
+
22
+ template<> EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
23
+ Packet4f plog<Packet4f>(const Packet4f& _x)
24
+ {
25
+ Packet4f x = _x;
26
+ _EIGEN_DECLARE_CONST_Packet4f(1 , 1.0f);
27
+ _EIGEN_DECLARE_CONST_Packet4f(half, 0.5f);
28
+ _EIGEN_DECLARE_CONST_Packet4i(0x7f, 0x7f);
29
+
30
+ _EIGEN_DECLARE_CONST_Packet4f_FROM_INT(inv_mant_mask, ~0x7f800000);
31
+
32
+ /* the smallest non denormalized float number */
33
+ _EIGEN_DECLARE_CONST_Packet4f_FROM_INT(min_norm_pos, 0x00800000);
34
+ _EIGEN_DECLARE_CONST_Packet4f_FROM_INT(minus_inf, 0xff800000);//-1.f/0.f);
35
+
36
+ /* natural logarithm computed for 4 simultaneous float
37
+ return NaN for x <= 0
38
+ */
39
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_SQRTHF, 0.707106781186547524f);
40
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_p0, 7.0376836292E-2f);
41
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_p1, - 1.1514610310E-1f);
42
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_p2, 1.1676998740E-1f);
43
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_p3, - 1.2420140846E-1f);
44
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_p4, + 1.4249322787E-1f);
45
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_p5, - 1.6668057665E-1f);
46
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_p6, + 2.0000714765E-1f);
47
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_p7, - 2.4999993993E-1f);
48
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_p8, + 3.3333331174E-1f);
49
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_q1, -2.12194440e-4f);
50
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_q2, 0.693359375f);
51
+
52
+
53
+ Packet4i emm0;
54
+
55
+ Packet4f invalid_mask = _mm_cmpnge_ps(x, _mm_setzero_ps()); // not greater equal is true if x is NaN
56
+ Packet4f iszero_mask = _mm_cmpeq_ps(x, _mm_setzero_ps());
57
+
58
+ x = pmax(x, p4f_min_norm_pos); /* cut off denormalized stuff */
59
+ emm0 = _mm_srli_epi32(_mm_castps_si128(x), 23);
60
+
61
+ /* keep only the fractional part */
62
+ x = _mm_and_ps(x, p4f_inv_mant_mask);
63
+ x = _mm_or_ps(x, p4f_half);
64
+
65
+ emm0 = _mm_sub_epi32(emm0, p4i_0x7f);
66
+ Packet4f e = padd(Packet4f(_mm_cvtepi32_ps(emm0)), p4f_1);
67
+
68
+ /* part2:
69
+ if( x < SQRTHF ) {
70
+ e -= 1;
71
+ x = x + x - 1.0;
72
+ } else { x = x - 1.0; }
73
+ */
74
+ Packet4f mask = _mm_cmplt_ps(x, p4f_cephes_SQRTHF);
75
+ Packet4f tmp = pand(x, mask);
76
+ x = psub(x, p4f_1);
77
+ e = psub(e, pand(p4f_1, mask));
78
+ x = padd(x, tmp);
79
+
80
+ Packet4f x2 = pmul(x,x);
81
+ Packet4f x3 = pmul(x2,x);
82
+
83
+ Packet4f y, y1, y2;
84
+ y = pmadd(p4f_cephes_log_p0, x, p4f_cephes_log_p1);
85
+ y1 = pmadd(p4f_cephes_log_p3, x, p4f_cephes_log_p4);
86
+ y2 = pmadd(p4f_cephes_log_p6, x, p4f_cephes_log_p7);
87
+ y = pmadd(y , x, p4f_cephes_log_p2);
88
+ y1 = pmadd(y1, x, p4f_cephes_log_p5);
89
+ y2 = pmadd(y2, x, p4f_cephes_log_p8);
90
+ y = pmadd(y, x3, y1);
91
+ y = pmadd(y, x3, y2);
92
+ y = pmul(y, x3);
93
+
94
+ y1 = pmul(e, p4f_cephes_log_q1);
95
+ tmp = pmul(x2, p4f_half);
96
+ y = padd(y, y1);
97
+ x = psub(x, tmp);
98
+ y2 = pmul(e, p4f_cephes_log_q2);
99
+ x = padd(x, y);
100
+ x = padd(x, y2);
101
+ // negative arg will be NAN, 0 will be -INF
102
+ return _mm_or_ps(_mm_andnot_ps(iszero_mask, _mm_or_ps(x, invalid_mask)),
103
+ _mm_and_ps(iszero_mask, p4f_minus_inf));
104
+ }
105
+
106
+ template<> EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
107
+ Packet4f pexp<Packet4f>(const Packet4f& _x)
108
+ {
109
+ Packet4f x = _x;
110
+ _EIGEN_DECLARE_CONST_Packet4f(1 , 1.0f);
111
+ _EIGEN_DECLARE_CONST_Packet4f(half, 0.5f);
112
+ _EIGEN_DECLARE_CONST_Packet4i(0x7f, 0x7f);
113
+
114
+
115
+ _EIGEN_DECLARE_CONST_Packet4f(exp_hi, 88.3762626647950f);
116
+ _EIGEN_DECLARE_CONST_Packet4f(exp_lo, -88.3762626647949f);
117
+
118
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_LOG2EF, 1.44269504088896341f);
119
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_exp_C1, 0.693359375f);
120
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_exp_C2, -2.12194440e-4f);
121
+
122
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_exp_p0, 1.9875691500E-4f);
123
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_exp_p1, 1.3981999507E-3f);
124
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_exp_p2, 8.3334519073E-3f);
125
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_exp_p3, 4.1665795894E-2f);
126
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_exp_p4, 1.6666665459E-1f);
127
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_exp_p5, 5.0000001201E-1f);
128
+
129
+ Packet4f tmp, fx;
130
+ Packet4i emm0;
131
+
132
+ // clamp x
133
+ x = pmax(pmin(x, p4f_exp_hi), p4f_exp_lo);
134
+
135
+ /* express exp(x) as exp(g + n*log(2)) */
136
+ fx = pmadd(x, p4f_cephes_LOG2EF, p4f_half);
137
+
138
+ #ifdef EIGEN_VECTORIZE_SSE4_1
139
+ fx = _mm_floor_ps(fx);
140
+ #else
141
+ emm0 = _mm_cvttps_epi32(fx);
142
+ tmp = _mm_cvtepi32_ps(emm0);
143
+ /* if greater, substract 1 */
144
+ Packet4f mask = _mm_cmpgt_ps(tmp, fx);
145
+ mask = _mm_and_ps(mask, p4f_1);
146
+ fx = psub(tmp, mask);
147
+ #endif
148
+
149
+ tmp = pmul(fx, p4f_cephes_exp_C1);
150
+ Packet4f z = pmul(fx, p4f_cephes_exp_C2);
151
+ x = psub(x, tmp);
152
+ x = psub(x, z);
153
+
154
+ z = pmul(x,x);
155
+
156
+ Packet4f y = p4f_cephes_exp_p0;
157
+ y = pmadd(y, x, p4f_cephes_exp_p1);
158
+ y = pmadd(y, x, p4f_cephes_exp_p2);
159
+ y = pmadd(y, x, p4f_cephes_exp_p3);
160
+ y = pmadd(y, x, p4f_cephes_exp_p4);
161
+ y = pmadd(y, x, p4f_cephes_exp_p5);
162
+ y = pmadd(y, z, x);
163
+ y = padd(y, p4f_1);
164
+
165
+ // build 2^n
166
+ emm0 = _mm_cvttps_epi32(fx);
167
+ emm0 = _mm_add_epi32(emm0, p4i_0x7f);
168
+ emm0 = _mm_slli_epi32(emm0, 23);
169
+ return pmax(pmul(y, Packet4f(_mm_castsi128_ps(emm0))), _x);
170
+ }
171
+ template<> EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
172
+ Packet2d pexp<Packet2d>(const Packet2d& _x)
173
+ {
174
+ Packet2d x = _x;
175
+
176
+ _EIGEN_DECLARE_CONST_Packet2d(1 , 1.0);
177
+ _EIGEN_DECLARE_CONST_Packet2d(2 , 2.0);
178
+ _EIGEN_DECLARE_CONST_Packet2d(half, 0.5);
179
+
180
+ _EIGEN_DECLARE_CONST_Packet2d(exp_hi, 709.437);
181
+ _EIGEN_DECLARE_CONST_Packet2d(exp_lo, -709.436139303);
182
+
183
+ _EIGEN_DECLARE_CONST_Packet2d(cephes_LOG2EF, 1.4426950408889634073599);
184
+
185
+ _EIGEN_DECLARE_CONST_Packet2d(cephes_exp_p0, 1.26177193074810590878e-4);
186
+ _EIGEN_DECLARE_CONST_Packet2d(cephes_exp_p1, 3.02994407707441961300e-2);
187
+ _EIGEN_DECLARE_CONST_Packet2d(cephes_exp_p2, 9.99999999999999999910e-1);
188
+
189
+ _EIGEN_DECLARE_CONST_Packet2d(cephes_exp_q0, 3.00198505138664455042e-6);
190
+ _EIGEN_DECLARE_CONST_Packet2d(cephes_exp_q1, 2.52448340349684104192e-3);
191
+ _EIGEN_DECLARE_CONST_Packet2d(cephes_exp_q2, 2.27265548208155028766e-1);
192
+ _EIGEN_DECLARE_CONST_Packet2d(cephes_exp_q3, 2.00000000000000000009e0);
193
+
194
+ _EIGEN_DECLARE_CONST_Packet2d(cephes_exp_C1, 0.693145751953125);
195
+ _EIGEN_DECLARE_CONST_Packet2d(cephes_exp_C2, 1.42860682030941723212e-6);
196
+ static const __m128i p4i_1023_0 = _mm_setr_epi32(1023, 1023, 0, 0);
197
+
198
+ Packet2d tmp, fx;
199
+ Packet4i emm0;
200
+
201
+ // clamp x
202
+ x = pmax(pmin(x, p2d_exp_hi), p2d_exp_lo);
203
+ /* express exp(x) as exp(g + n*log(2)) */
204
+ fx = pmadd(p2d_cephes_LOG2EF, x, p2d_half);
205
+
206
+ #ifdef EIGEN_VECTORIZE_SSE4_1
207
+ fx = _mm_floor_pd(fx);
208
+ #else
209
+ emm0 = _mm_cvttpd_epi32(fx);
210
+ tmp = _mm_cvtepi32_pd(emm0);
211
+ /* if greater, substract 1 */
212
+ Packet2d mask = _mm_cmpgt_pd(tmp, fx);
213
+ mask = _mm_and_pd(mask, p2d_1);
214
+ fx = psub(tmp, mask);
215
+ #endif
216
+
217
+ tmp = pmul(fx, p2d_cephes_exp_C1);
218
+ Packet2d z = pmul(fx, p2d_cephes_exp_C2);
219
+ x = psub(x, tmp);
220
+ x = psub(x, z);
221
+
222
+ Packet2d x2 = pmul(x,x);
223
+
224
+ Packet2d px = p2d_cephes_exp_p0;
225
+ px = pmadd(px, x2, p2d_cephes_exp_p1);
226
+ px = pmadd(px, x2, p2d_cephes_exp_p2);
227
+ px = pmul (px, x);
228
+
229
+ Packet2d qx = p2d_cephes_exp_q0;
230
+ qx = pmadd(qx, x2, p2d_cephes_exp_q1);
231
+ qx = pmadd(qx, x2, p2d_cephes_exp_q2);
232
+ qx = pmadd(qx, x2, p2d_cephes_exp_q3);
233
+
234
+ x = pdiv(px,psub(qx,px));
235
+ x = pmadd(p2d_2,x,p2d_1);
236
+
237
+ // build 2^n
238
+ emm0 = _mm_cvttpd_epi32(fx);
239
+ emm0 = _mm_add_epi32(emm0, p4i_1023_0);
240
+ emm0 = _mm_slli_epi32(emm0, 20);
241
+ emm0 = _mm_shuffle_epi32(emm0, _MM_SHUFFLE(1,2,0,3));
242
+ return pmax(pmul(x, Packet2d(_mm_castsi128_pd(emm0))), _x);
243
+ }
244
+
245
+ /* evaluation of 4 sines at onces, using SSE2 intrinsics.
246
+
247
+ The code is the exact rewriting of the cephes sinf function.
248
+ Precision is excellent as long as x < 8192 (I did not bother to
249
+ take into account the special handling they have for greater values
250
+ -- it does not return garbage for arguments over 8192, though, but
251
+ the extra precision is missing).
252
+
253
+ Note that it is such that sinf((float)M_PI) = 8.74e-8, which is the
254
+ surprising but correct result.
255
+ */
256
+
257
+ template<> EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
258
+ Packet4f psin<Packet4f>(const Packet4f& _x)
259
+ {
260
+ Packet4f x = _x;
261
+ _EIGEN_DECLARE_CONST_Packet4f(1 , 1.0f);
262
+ _EIGEN_DECLARE_CONST_Packet4f(half, 0.5f);
263
+
264
+ _EIGEN_DECLARE_CONST_Packet4i(1, 1);
265
+ _EIGEN_DECLARE_CONST_Packet4i(not1, ~1);
266
+ _EIGEN_DECLARE_CONST_Packet4i(2, 2);
267
+ _EIGEN_DECLARE_CONST_Packet4i(4, 4);
268
+
269
+ _EIGEN_DECLARE_CONST_Packet4f_FROM_INT(sign_mask, 0x80000000);
270
+
271
+ _EIGEN_DECLARE_CONST_Packet4f(minus_cephes_DP1,-0.78515625f);
272
+ _EIGEN_DECLARE_CONST_Packet4f(minus_cephes_DP2, -2.4187564849853515625e-4f);
273
+ _EIGEN_DECLARE_CONST_Packet4f(minus_cephes_DP3, -3.77489497744594108e-8f);
274
+ _EIGEN_DECLARE_CONST_Packet4f(sincof_p0, -1.9515295891E-4f);
275
+ _EIGEN_DECLARE_CONST_Packet4f(sincof_p1, 8.3321608736E-3f);
276
+ _EIGEN_DECLARE_CONST_Packet4f(sincof_p2, -1.6666654611E-1f);
277
+ _EIGEN_DECLARE_CONST_Packet4f(coscof_p0, 2.443315711809948E-005f);
278
+ _EIGEN_DECLARE_CONST_Packet4f(coscof_p1, -1.388731625493765E-003f);
279
+ _EIGEN_DECLARE_CONST_Packet4f(coscof_p2, 4.166664568298827E-002f);
280
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_FOPI, 1.27323954473516f); // 4 / M_PI
281
+
282
+ Packet4f xmm1, xmm2, xmm3, sign_bit, y;
283
+
284
+ Packet4i emm0, emm2;
285
+ sign_bit = x;
286
+ /* take the absolute value */
287
+ x = pabs(x);
288
+
289
+ /* take the modulo */
290
+
291
+ /* extract the sign bit (upper one) */
292
+ sign_bit = _mm_and_ps(sign_bit, p4f_sign_mask);
293
+
294
+ /* scale by 4/Pi */
295
+ y = pmul(x, p4f_cephes_FOPI);
296
+
297
+ /* store the integer part of y in mm0 */
298
+ emm2 = _mm_cvttps_epi32(y);
299
+ /* j=(j+1) & (~1) (see the cephes sources) */
300
+ emm2 = _mm_add_epi32(emm2, p4i_1);
301
+ emm2 = _mm_and_si128(emm2, p4i_not1);
302
+ y = _mm_cvtepi32_ps(emm2);
303
+ /* get the swap sign flag */
304
+ emm0 = _mm_and_si128(emm2, p4i_4);
305
+ emm0 = _mm_slli_epi32(emm0, 29);
306
+ /* get the polynom selection mask
307
+ there is one polynom for 0 <= x <= Pi/4
308
+ and another one for Pi/4<x<=Pi/2
309
+
310
+ Both branches will be computed.
311
+ */
312
+ emm2 = _mm_and_si128(emm2, p4i_2);
313
+ emm2 = _mm_cmpeq_epi32(emm2, _mm_setzero_si128());
314
+
315
+ Packet4f swap_sign_bit = _mm_castsi128_ps(emm0);
316
+ Packet4f poly_mask = _mm_castsi128_ps(emm2);
317
+ sign_bit = _mm_xor_ps(sign_bit, swap_sign_bit);
318
+
319
+ /* The magic pass: "Extended precision modular arithmetic"
320
+ x = ((x - y * DP1) - y * DP2) - y * DP3; */
321
+ xmm1 = pmul(y, p4f_minus_cephes_DP1);
322
+ xmm2 = pmul(y, p4f_minus_cephes_DP2);
323
+ xmm3 = pmul(y, p4f_minus_cephes_DP3);
324
+ x = padd(x, xmm1);
325
+ x = padd(x, xmm2);
326
+ x = padd(x, xmm3);
327
+
328
+ /* Evaluate the first polynom (0 <= x <= Pi/4) */
329
+ y = p4f_coscof_p0;
330
+ Packet4f z = _mm_mul_ps(x,x);
331
+
332
+ y = pmadd(y, z, p4f_coscof_p1);
333
+ y = pmadd(y, z, p4f_coscof_p2);
334
+ y = pmul(y, z);
335
+ y = pmul(y, z);
336
+ Packet4f tmp = pmul(z, p4f_half);
337
+ y = psub(y, tmp);
338
+ y = padd(y, p4f_1);
339
+
340
+ /* Evaluate the second polynom (Pi/4 <= x <= 0) */
341
+
342
+ Packet4f y2 = p4f_sincof_p0;
343
+ y2 = pmadd(y2, z, p4f_sincof_p1);
344
+ y2 = pmadd(y2, z, p4f_sincof_p2);
345
+ y2 = pmul(y2, z);
346
+ y2 = pmul(y2, x);
347
+ y2 = padd(y2, x);
348
+
349
+ /* select the correct result from the two polynoms */
350
+ y2 = _mm_and_ps(poly_mask, y2);
351
+ y = _mm_andnot_ps(poly_mask, y);
352
+ y = _mm_or_ps(y,y2);
353
+ /* update the sign */
354
+ return _mm_xor_ps(y, sign_bit);
355
+ }
356
+
357
+ /* almost the same as psin */
358
+ template<> EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
359
+ Packet4f pcos<Packet4f>(const Packet4f& _x)
360
+ {
361
+ Packet4f x = _x;
362
+ _EIGEN_DECLARE_CONST_Packet4f(1 , 1.0f);
363
+ _EIGEN_DECLARE_CONST_Packet4f(half, 0.5f);
364
+
365
+ _EIGEN_DECLARE_CONST_Packet4i(1, 1);
366
+ _EIGEN_DECLARE_CONST_Packet4i(not1, ~1);
367
+ _EIGEN_DECLARE_CONST_Packet4i(2, 2);
368
+ _EIGEN_DECLARE_CONST_Packet4i(4, 4);
369
+
370
+ _EIGEN_DECLARE_CONST_Packet4f(minus_cephes_DP1,-0.78515625f);
371
+ _EIGEN_DECLARE_CONST_Packet4f(minus_cephes_DP2, -2.4187564849853515625e-4f);
372
+ _EIGEN_DECLARE_CONST_Packet4f(minus_cephes_DP3, -3.77489497744594108e-8f);
373
+ _EIGEN_DECLARE_CONST_Packet4f(sincof_p0, -1.9515295891E-4f);
374
+ _EIGEN_DECLARE_CONST_Packet4f(sincof_p1, 8.3321608736E-3f);
375
+ _EIGEN_DECLARE_CONST_Packet4f(sincof_p2, -1.6666654611E-1f);
376
+ _EIGEN_DECLARE_CONST_Packet4f(coscof_p0, 2.443315711809948E-005f);
377
+ _EIGEN_DECLARE_CONST_Packet4f(coscof_p1, -1.388731625493765E-003f);
378
+ _EIGEN_DECLARE_CONST_Packet4f(coscof_p2, 4.166664568298827E-002f);
379
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_FOPI, 1.27323954473516f); // 4 / M_PI
380
+
381
+ Packet4f xmm1, xmm2, xmm3, y;
382
+ Packet4i emm0, emm2;
383
+
384
+ x = pabs(x);
385
+
386
+ /* scale by 4/Pi */
387
+ y = pmul(x, p4f_cephes_FOPI);
388
+
389
+ /* get the integer part of y */
390
+ emm2 = _mm_cvttps_epi32(y);
391
+ /* j=(j+1) & (~1) (see the cephes sources) */
392
+ emm2 = _mm_add_epi32(emm2, p4i_1);
393
+ emm2 = _mm_and_si128(emm2, p4i_not1);
394
+ y = _mm_cvtepi32_ps(emm2);
395
+
396
+ emm2 = _mm_sub_epi32(emm2, p4i_2);
397
+
398
+ /* get the swap sign flag */
399
+ emm0 = _mm_andnot_si128(emm2, p4i_4);
400
+ emm0 = _mm_slli_epi32(emm0, 29);
401
+ /* get the polynom selection mask */
402
+ emm2 = _mm_and_si128(emm2, p4i_2);
403
+ emm2 = _mm_cmpeq_epi32(emm2, _mm_setzero_si128());
404
+
405
+ Packet4f sign_bit = _mm_castsi128_ps(emm0);
406
+ Packet4f poly_mask = _mm_castsi128_ps(emm2);
407
+
408
+ /* The magic pass: "Extended precision modular arithmetic"
409
+ x = ((x - y * DP1) - y * DP2) - y * DP3; */
410
+ xmm1 = pmul(y, p4f_minus_cephes_DP1);
411
+ xmm2 = pmul(y, p4f_minus_cephes_DP2);
412
+ xmm3 = pmul(y, p4f_minus_cephes_DP3);
413
+ x = padd(x, xmm1);
414
+ x = padd(x, xmm2);
415
+ x = padd(x, xmm3);
416
+
417
+ /* Evaluate the first polynom (0 <= x <= Pi/4) */
418
+ y = p4f_coscof_p0;
419
+ Packet4f z = pmul(x,x);
420
+
421
+ y = pmadd(y,z,p4f_coscof_p1);
422
+ y = pmadd(y,z,p4f_coscof_p2);
423
+ y = pmul(y, z);
424
+ y = pmul(y, z);
425
+ Packet4f tmp = _mm_mul_ps(z, p4f_half);
426
+ y = psub(y, tmp);
427
+ y = padd(y, p4f_1);
428
+
429
+ /* Evaluate the second polynom (Pi/4 <= x <= 0) */
430
+ Packet4f y2 = p4f_sincof_p0;
431
+ y2 = pmadd(y2, z, p4f_sincof_p1);
432
+ y2 = pmadd(y2, z, p4f_sincof_p2);
433
+ y2 = pmul(y2, z);
434
+ y2 = pmadd(y2, x, x);
435
+
436
+ /* select the correct result from the two polynoms */
437
+ y2 = _mm_and_ps(poly_mask, y2);
438
+ y = _mm_andnot_ps(poly_mask, y);
439
+ y = _mm_or_ps(y,y2);
440
+
441
+ /* update the sign */
442
+ return _mm_xor_ps(y, sign_bit);
443
+ }
444
+
445
+ #if EIGEN_FAST_MATH
446
+
447
+ // Functions for sqrt.
448
+ // The EIGEN_FAST_MATH version uses the _mm_rsqrt_ps approximation and one step
449
+ // of Newton's method, at a cost of 1-2 bits of precision as opposed to the
450
+ // exact solution. It does not handle +inf, or denormalized numbers correctly.
451
+ // The main advantage of this approach is not just speed, but also the fact that
452
+ // it can be inlined and pipelined with other computations, further reducing its
453
+ // effective latency. This is similar to Quake3's fast inverse square root.
454
+ // For detail see here: http://www.beyond3d.com/content/articles/8/
455
+ template<> EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
456
+ Packet4f psqrt<Packet4f>(const Packet4f& _x)
457
+ {
458
+ Packet4f half = pmul(_x, pset1<Packet4f>(.5f));
459
+ Packet4f denormal_mask = _mm_and_ps(
460
+ _mm_cmpge_ps(_x, _mm_setzero_ps()),
461
+ _mm_cmplt_ps(_x, pset1<Packet4f>((std::numeric_limits<float>::min)())));
462
+
463
+ // Compute approximate reciprocal sqrt.
464
+ Packet4f x = _mm_rsqrt_ps(_x);
465
+ // Do a single step of Newton's iteration.
466
+ x = pmul(x, psub(pset1<Packet4f>(1.5f), pmul(half, pmul(x,x))));
467
+ // Flush results for denormals to zero.
468
+ return _mm_andnot_ps(denormal_mask, pmul(_x,x));
469
+ }
470
+
471
+ #else
472
+
473
+ template<>EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
474
+ Packet4f psqrt<Packet4f>(const Packet4f& x) { return _mm_sqrt_ps(x); }
475
+
476
+ #endif
477
+
478
+ template<> EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
479
+ Packet2d psqrt<Packet2d>(const Packet2d& x) { return _mm_sqrt_pd(x); }
480
+
481
+ #if EIGEN_FAST_MATH
482
+
483
+ template<> EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
484
+ Packet4f prsqrt<Packet4f>(const Packet4f& _x) {
485
+ _EIGEN_DECLARE_CONST_Packet4f_FROM_INT(inf, 0x7f800000);
486
+ _EIGEN_DECLARE_CONST_Packet4f_FROM_INT(nan, 0x7fc00000);
487
+ _EIGEN_DECLARE_CONST_Packet4f(one_point_five, 1.5f);
488
+ _EIGEN_DECLARE_CONST_Packet4f(minus_half, -0.5f);
489
+ _EIGEN_DECLARE_CONST_Packet4f_FROM_INT(flt_min, 0x00800000);
490
+
491
+ Packet4f neg_half = pmul(_x, p4f_minus_half);
492
+
493
+ // select only the inverse sqrt of positive normal inputs (denormals are
494
+ // flushed to zero and cause infs as well).
495
+ Packet4f le_zero_mask = _mm_cmple_ps(_x, p4f_flt_min);
496
+ Packet4f x = _mm_andnot_ps(le_zero_mask, _mm_rsqrt_ps(_x));
497
+
498
+ // Fill in NaNs and Infs for the negative/zero entries.
499
+ Packet4f neg_mask = _mm_cmplt_ps(_x, _mm_setzero_ps());
500
+ Packet4f zero_mask = _mm_andnot_ps(neg_mask, le_zero_mask);
501
+ Packet4f infs_and_nans = _mm_or_ps(_mm_and_ps(neg_mask, p4f_nan),
502
+ _mm_and_ps(zero_mask, p4f_inf));
503
+
504
+ // Do a single step of Newton's iteration.
505
+ x = pmul(x, pmadd(neg_half, pmul(x, x), p4f_one_point_five));
506
+
507
+ // Insert NaNs and Infs in all the right places.
508
+ return _mm_or_ps(x, infs_and_nans);
509
+ }
510
+
511
+ #else
512
+
513
+ template<> EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
514
+ Packet4f prsqrt<Packet4f>(const Packet4f& x) {
515
+ // Unfortunately we can't use the much faster mm_rqsrt_ps since it only provides an approximation.
516
+ return _mm_div_ps(pset1<Packet4f>(1.0f), _mm_sqrt_ps(x));
517
+ }
518
+
519
+ #endif
520
+
521
+ template<> EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
522
+ Packet2d prsqrt<Packet2d>(const Packet2d& x) {
523
+ // Unfortunately we can't use the much faster mm_rqsrt_pd since it only provides an approximation.
524
+ return _mm_div_pd(pset1<Packet2d>(1.0), _mm_sqrt_pd(x));
525
+ }
526
+
527
+ // Hyperbolic Tangent function.
528
+ template <>
529
+ EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED Packet4f
530
+ ptanh<Packet4f>(const Packet4f& x) {
531
+ return internal::generic_fast_tanh_float(x);
532
+ }
533
+
534
+ } // end namespace internal
535
+
536
+ namespace numext {
537
+
538
+ template<>
539
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE
540
+ float sqrt(const float &x)
541
+ {
542
+ return internal::pfirst(internal::Packet4f(_mm_sqrt_ss(_mm_set_ss(x))));
543
+ }
544
+
545
+ template<>
546
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE
547
+ double sqrt(const double &x)
548
+ {
549
+ #if EIGEN_COMP_GNUC_STRICT
550
+ // This works around a GCC bug generating poor code for _mm_sqrt_pd
551
+ // See https://bitbucket.org/eigen/eigen/commits/14f468dba4d350d7c19c9b93072e19f7b3df563b
552
+ return internal::pfirst(internal::Packet2d(__builtin_ia32_sqrtsd(_mm_set_sd(x))));
553
+ #else
554
+ return internal::pfirst(internal::Packet2d(_mm_sqrt_pd(_mm_set_sd(x))));
555
+ #endif
556
+ }
557
+
558
+ } // end namespace numex
559
+
560
+ } // end namespace Eigen
561
+
562
+ #endif // EIGEN_MATH_FUNCTIONS_SSE_H