tomoto 0.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (420) hide show
  1. checksums.yaml +7 -0
  2. data/CHANGELOG.md +3 -0
  3. data/LICENSE.txt +22 -0
  4. data/README.md +123 -0
  5. data/ext/tomoto/ext.cpp +245 -0
  6. data/ext/tomoto/extconf.rb +28 -0
  7. data/lib/tomoto.rb +12 -0
  8. data/lib/tomoto/ct.rb +11 -0
  9. data/lib/tomoto/hdp.rb +11 -0
  10. data/lib/tomoto/lda.rb +67 -0
  11. data/lib/tomoto/version.rb +3 -0
  12. data/vendor/EigenRand/EigenRand/Core.h +1139 -0
  13. data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
  14. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
  15. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
  16. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
  17. data/vendor/EigenRand/EigenRand/EigenRand +19 -0
  18. data/vendor/EigenRand/EigenRand/Macro.h +24 -0
  19. data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
  20. data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
  21. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
  22. data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
  23. data/vendor/EigenRand/EigenRand/doc.h +220 -0
  24. data/vendor/EigenRand/LICENSE +21 -0
  25. data/vendor/EigenRand/README.md +288 -0
  26. data/vendor/eigen/COPYING.BSD +26 -0
  27. data/vendor/eigen/COPYING.GPL +674 -0
  28. data/vendor/eigen/COPYING.LGPL +502 -0
  29. data/vendor/eigen/COPYING.MINPACK +52 -0
  30. data/vendor/eigen/COPYING.MPL2 +373 -0
  31. data/vendor/eigen/COPYING.README +18 -0
  32. data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
  33. data/vendor/eigen/Eigen/Cholesky +46 -0
  34. data/vendor/eigen/Eigen/CholmodSupport +48 -0
  35. data/vendor/eigen/Eigen/Core +537 -0
  36. data/vendor/eigen/Eigen/Dense +7 -0
  37. data/vendor/eigen/Eigen/Eigen +2 -0
  38. data/vendor/eigen/Eigen/Eigenvalues +61 -0
  39. data/vendor/eigen/Eigen/Geometry +62 -0
  40. data/vendor/eigen/Eigen/Householder +30 -0
  41. data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
  42. data/vendor/eigen/Eigen/Jacobi +33 -0
  43. data/vendor/eigen/Eigen/LU +50 -0
  44. data/vendor/eigen/Eigen/MetisSupport +35 -0
  45. data/vendor/eigen/Eigen/OrderingMethods +73 -0
  46. data/vendor/eigen/Eigen/PaStiXSupport +48 -0
  47. data/vendor/eigen/Eigen/PardisoSupport +35 -0
  48. data/vendor/eigen/Eigen/QR +51 -0
  49. data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
  50. data/vendor/eigen/Eigen/SPQRSupport +34 -0
  51. data/vendor/eigen/Eigen/SVD +51 -0
  52. data/vendor/eigen/Eigen/Sparse +36 -0
  53. data/vendor/eigen/Eigen/SparseCholesky +45 -0
  54. data/vendor/eigen/Eigen/SparseCore +69 -0
  55. data/vendor/eigen/Eigen/SparseLU +46 -0
  56. data/vendor/eigen/Eigen/SparseQR +37 -0
  57. data/vendor/eigen/Eigen/StdDeque +27 -0
  58. data/vendor/eigen/Eigen/StdList +26 -0
  59. data/vendor/eigen/Eigen/StdVector +27 -0
  60. data/vendor/eigen/Eigen/SuperLUSupport +64 -0
  61. data/vendor/eigen/Eigen/UmfPackSupport +40 -0
  62. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
  63. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
  64. data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  65. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
  66. data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
  67. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
  68. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
  69. data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
  70. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
  71. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
  72. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
  73. data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
  74. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
  75. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
  76. data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
  77. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
  78. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
  79. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
  80. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
  81. data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  82. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
  84. data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
  85. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
  86. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
  87. data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
  88. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
  89. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
  90. data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
  91. data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
  92. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  93. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
  94. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
  95. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
  96. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
  97. data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
  98. data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
  99. data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
  100. data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
  101. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
  102. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
  103. data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
  104. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
  105. data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
  106. data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
  107. data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
  108. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
  109. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
  110. data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
  111. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
  112. data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
  113. data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
  114. data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
  115. data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
  116. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
  117. data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
  118. data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
  119. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
  120. data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  121. data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
  122. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
  123. data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
  124. data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
  125. data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
  126. data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
  127. data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
  128. data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
  129. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
  130. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
  131. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
  132. data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
  133. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
  134. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
  135. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
  136. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
  137. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
  138. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
  139. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
  140. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
  141. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
  142. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
  143. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
  145. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
  146. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
  148. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
  149. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
  153. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
  154. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
  156. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
  160. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
  161. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
  162. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
  163. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
  164. data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  165. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
  166. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
  167. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
  168. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
  169. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  170. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
  171. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
  172. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  173. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
  174. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
  175. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
  176. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
  177. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  178. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  179. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  180. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
  181. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
  182. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  183. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  184. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
  185. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
  186. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
  187. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
  188. data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
  189. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
  190. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  191. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
  192. data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
  193. data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
  194. data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
  195. data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
  196. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
  197. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
  198. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
  199. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  200. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
  201. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  202. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  203. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  204. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  205. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  206. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  207. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
  208. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
  209. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  210. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
  211. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  212. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
  213. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
  214. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
  215. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
  216. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
  217. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
  218. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
  219. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  220. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
  221. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
  222. data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
  223. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
  224. data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
  225. data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
  226. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
  227. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
  228. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
  229. data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
  230. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
  231. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  232. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
  233. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
  234. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
  235. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
  236. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
  237. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
  238. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
  239. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
  240. data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
  241. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
  242. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
  243. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
  244. data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  245. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
  246. data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  247. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
  248. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
  249. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
  250. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  251. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
  252. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
  253. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  254. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
  255. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
  256. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
  257. data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  258. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
  259. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
  260. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
  261. data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  262. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
  263. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  264. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
  265. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  266. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
  267. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
  268. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  269. data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  270. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
  271. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
  272. data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  273. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
  274. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
  275. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
  276. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
  277. data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  278. data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
  279. data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  280. data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
  281. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
  282. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
  283. data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  284. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
  285. data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
  295. data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  296. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
  297. data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  298. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  299. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  300. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  307. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  308. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  309. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  310. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  311. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  312. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  313. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
  314. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +126 -0
  315. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
  316. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
  317. data/vendor/eigen/Eigen/src/StlSupport/details.h +84 -0
  318. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
  319. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
  320. data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
  321. data/vendor/eigen/Eigen/src/misc/Kernel.h +79 -0
  322. data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
  323. data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
  324. data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
  325. data/vendor/eigen/Eigen/src/misc/lapacke.h +16291 -0
  326. data/vendor/eigen/Eigen/src/misc/lapacke_mangling.h +17 -0
  327. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +332 -0
  328. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
  329. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
  330. data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  331. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +163 -0
  332. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  333. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
  334. data/vendor/eigen/README.md +3 -0
  335. data/vendor/eigen/bench/README.txt +55 -0
  336. data/vendor/eigen/bench/btl/COPYING +340 -0
  337. data/vendor/eigen/bench/btl/README +154 -0
  338. data/vendor/eigen/bench/tensors/README +21 -0
  339. data/vendor/eigen/blas/README.txt +6 -0
  340. data/vendor/eigen/demos/mandelbrot/README +10 -0
  341. data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
  342. data/vendor/eigen/demos/opengl/README +13 -0
  343. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
  344. data/vendor/eigen/unsupported/README.txt +50 -0
  345. data/vendor/tomotopy/LICENSE +21 -0
  346. data/vendor/tomotopy/README.kr.rst +375 -0
  347. data/vendor/tomotopy/README.rst +382 -0
  348. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
  349. data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
  350. data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
  351. data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
  352. data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
  353. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
  354. data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
  355. data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
  356. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
  357. data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
  358. data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
  359. data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
  360. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
  361. data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
  362. data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
  363. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
  364. data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
  365. data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
  366. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
  367. data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
  368. data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
  369. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
  370. data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
  371. data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
  372. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
  373. data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
  374. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
  375. data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
  376. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
  377. data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
  378. data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
  379. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
  380. data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
  381. data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
  382. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
  383. data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
  384. data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
  385. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
  386. data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
  387. data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
  388. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
  389. data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
  390. data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
  391. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
  392. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
  393. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +169 -0
  394. data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
  395. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
  396. data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
  397. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
  398. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
  399. data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
  400. data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
  401. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
  402. data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
  403. data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
  404. data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
  405. data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
  406. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
  407. data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
  408. data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
  409. data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
  410. data/vendor/tomotopy/src/Utils/exception.h +28 -0
  411. data/vendor/tomotopy/src/Utils/math.h +281 -0
  412. data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
  413. data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
  414. data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
  415. data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
  416. data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
  417. data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
  418. data/vendor/tomotopy/src/Utils/text.hpp +49 -0
  419. data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
  420. metadata +531 -0
@@ -0,0 +1,562 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2007 Julien Pommier
5
+ // Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ /* The sin, cos, exp, and log functions of this file come from
12
+ * Julien Pommier's sse math library: http://gruntthepeon.free.fr/ssemath/
13
+ */
14
+
15
+ #ifndef EIGEN_MATH_FUNCTIONS_SSE_H
16
+ #define EIGEN_MATH_FUNCTIONS_SSE_H
17
+
18
+ namespace Eigen {
19
+
20
+ namespace internal {
21
+
22
+ template<> EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
23
+ Packet4f plog<Packet4f>(const Packet4f& _x)
24
+ {
25
+ Packet4f x = _x;
26
+ _EIGEN_DECLARE_CONST_Packet4f(1 , 1.0f);
27
+ _EIGEN_DECLARE_CONST_Packet4f(half, 0.5f);
28
+ _EIGEN_DECLARE_CONST_Packet4i(0x7f, 0x7f);
29
+
30
+ _EIGEN_DECLARE_CONST_Packet4f_FROM_INT(inv_mant_mask, ~0x7f800000);
31
+
32
+ /* the smallest non denormalized float number */
33
+ _EIGEN_DECLARE_CONST_Packet4f_FROM_INT(min_norm_pos, 0x00800000);
34
+ _EIGEN_DECLARE_CONST_Packet4f_FROM_INT(minus_inf, 0xff800000);//-1.f/0.f);
35
+
36
+ /* natural logarithm computed for 4 simultaneous float
37
+ return NaN for x <= 0
38
+ */
39
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_SQRTHF, 0.707106781186547524f);
40
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_p0, 7.0376836292E-2f);
41
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_p1, - 1.1514610310E-1f);
42
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_p2, 1.1676998740E-1f);
43
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_p3, - 1.2420140846E-1f);
44
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_p4, + 1.4249322787E-1f);
45
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_p5, - 1.6668057665E-1f);
46
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_p6, + 2.0000714765E-1f);
47
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_p7, - 2.4999993993E-1f);
48
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_p8, + 3.3333331174E-1f);
49
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_q1, -2.12194440e-4f);
50
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_log_q2, 0.693359375f);
51
+
52
+
53
+ Packet4i emm0;
54
+
55
+ Packet4f invalid_mask = _mm_cmpnge_ps(x, _mm_setzero_ps()); // not greater equal is true if x is NaN
56
+ Packet4f iszero_mask = _mm_cmpeq_ps(x, _mm_setzero_ps());
57
+
58
+ x = pmax(x, p4f_min_norm_pos); /* cut off denormalized stuff */
59
+ emm0 = _mm_srli_epi32(_mm_castps_si128(x), 23);
60
+
61
+ /* keep only the fractional part */
62
+ x = _mm_and_ps(x, p4f_inv_mant_mask);
63
+ x = _mm_or_ps(x, p4f_half);
64
+
65
+ emm0 = _mm_sub_epi32(emm0, p4i_0x7f);
66
+ Packet4f e = padd(Packet4f(_mm_cvtepi32_ps(emm0)), p4f_1);
67
+
68
+ /* part2:
69
+ if( x < SQRTHF ) {
70
+ e -= 1;
71
+ x = x + x - 1.0;
72
+ } else { x = x - 1.0; }
73
+ */
74
+ Packet4f mask = _mm_cmplt_ps(x, p4f_cephes_SQRTHF);
75
+ Packet4f tmp = pand(x, mask);
76
+ x = psub(x, p4f_1);
77
+ e = psub(e, pand(p4f_1, mask));
78
+ x = padd(x, tmp);
79
+
80
+ Packet4f x2 = pmul(x,x);
81
+ Packet4f x3 = pmul(x2,x);
82
+
83
+ Packet4f y, y1, y2;
84
+ y = pmadd(p4f_cephes_log_p0, x, p4f_cephes_log_p1);
85
+ y1 = pmadd(p4f_cephes_log_p3, x, p4f_cephes_log_p4);
86
+ y2 = pmadd(p4f_cephes_log_p6, x, p4f_cephes_log_p7);
87
+ y = pmadd(y , x, p4f_cephes_log_p2);
88
+ y1 = pmadd(y1, x, p4f_cephes_log_p5);
89
+ y2 = pmadd(y2, x, p4f_cephes_log_p8);
90
+ y = pmadd(y, x3, y1);
91
+ y = pmadd(y, x3, y2);
92
+ y = pmul(y, x3);
93
+
94
+ y1 = pmul(e, p4f_cephes_log_q1);
95
+ tmp = pmul(x2, p4f_half);
96
+ y = padd(y, y1);
97
+ x = psub(x, tmp);
98
+ y2 = pmul(e, p4f_cephes_log_q2);
99
+ x = padd(x, y);
100
+ x = padd(x, y2);
101
+ // negative arg will be NAN, 0 will be -INF
102
+ return _mm_or_ps(_mm_andnot_ps(iszero_mask, _mm_or_ps(x, invalid_mask)),
103
+ _mm_and_ps(iszero_mask, p4f_minus_inf));
104
+ }
105
+
106
+ template<> EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
107
+ Packet4f pexp<Packet4f>(const Packet4f& _x)
108
+ {
109
+ Packet4f x = _x;
110
+ _EIGEN_DECLARE_CONST_Packet4f(1 , 1.0f);
111
+ _EIGEN_DECLARE_CONST_Packet4f(half, 0.5f);
112
+ _EIGEN_DECLARE_CONST_Packet4i(0x7f, 0x7f);
113
+
114
+
115
+ _EIGEN_DECLARE_CONST_Packet4f(exp_hi, 88.3762626647950f);
116
+ _EIGEN_DECLARE_CONST_Packet4f(exp_lo, -88.3762626647949f);
117
+
118
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_LOG2EF, 1.44269504088896341f);
119
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_exp_C1, 0.693359375f);
120
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_exp_C2, -2.12194440e-4f);
121
+
122
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_exp_p0, 1.9875691500E-4f);
123
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_exp_p1, 1.3981999507E-3f);
124
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_exp_p2, 8.3334519073E-3f);
125
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_exp_p3, 4.1665795894E-2f);
126
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_exp_p4, 1.6666665459E-1f);
127
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_exp_p5, 5.0000001201E-1f);
128
+
129
+ Packet4f tmp, fx;
130
+ Packet4i emm0;
131
+
132
+ // clamp x
133
+ x = pmax(pmin(x, p4f_exp_hi), p4f_exp_lo);
134
+
135
+ /* express exp(x) as exp(g + n*log(2)) */
136
+ fx = pmadd(x, p4f_cephes_LOG2EF, p4f_half);
137
+
138
+ #ifdef EIGEN_VECTORIZE_SSE4_1
139
+ fx = _mm_floor_ps(fx);
140
+ #else
141
+ emm0 = _mm_cvttps_epi32(fx);
142
+ tmp = _mm_cvtepi32_ps(emm0);
143
+ /* if greater, substract 1 */
144
+ Packet4f mask = _mm_cmpgt_ps(tmp, fx);
145
+ mask = _mm_and_ps(mask, p4f_1);
146
+ fx = psub(tmp, mask);
147
+ #endif
148
+
149
+ tmp = pmul(fx, p4f_cephes_exp_C1);
150
+ Packet4f z = pmul(fx, p4f_cephes_exp_C2);
151
+ x = psub(x, tmp);
152
+ x = psub(x, z);
153
+
154
+ z = pmul(x,x);
155
+
156
+ Packet4f y = p4f_cephes_exp_p0;
157
+ y = pmadd(y, x, p4f_cephes_exp_p1);
158
+ y = pmadd(y, x, p4f_cephes_exp_p2);
159
+ y = pmadd(y, x, p4f_cephes_exp_p3);
160
+ y = pmadd(y, x, p4f_cephes_exp_p4);
161
+ y = pmadd(y, x, p4f_cephes_exp_p5);
162
+ y = pmadd(y, z, x);
163
+ y = padd(y, p4f_1);
164
+
165
+ // build 2^n
166
+ emm0 = _mm_cvttps_epi32(fx);
167
+ emm0 = _mm_add_epi32(emm0, p4i_0x7f);
168
+ emm0 = _mm_slli_epi32(emm0, 23);
169
+ return pmax(pmul(y, Packet4f(_mm_castsi128_ps(emm0))), _x);
170
+ }
171
+ template<> EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
172
+ Packet2d pexp<Packet2d>(const Packet2d& _x)
173
+ {
174
+ Packet2d x = _x;
175
+
176
+ _EIGEN_DECLARE_CONST_Packet2d(1 , 1.0);
177
+ _EIGEN_DECLARE_CONST_Packet2d(2 , 2.0);
178
+ _EIGEN_DECLARE_CONST_Packet2d(half, 0.5);
179
+
180
+ _EIGEN_DECLARE_CONST_Packet2d(exp_hi, 709.437);
181
+ _EIGEN_DECLARE_CONST_Packet2d(exp_lo, -709.436139303);
182
+
183
+ _EIGEN_DECLARE_CONST_Packet2d(cephes_LOG2EF, 1.4426950408889634073599);
184
+
185
+ _EIGEN_DECLARE_CONST_Packet2d(cephes_exp_p0, 1.26177193074810590878e-4);
186
+ _EIGEN_DECLARE_CONST_Packet2d(cephes_exp_p1, 3.02994407707441961300e-2);
187
+ _EIGEN_DECLARE_CONST_Packet2d(cephes_exp_p2, 9.99999999999999999910e-1);
188
+
189
+ _EIGEN_DECLARE_CONST_Packet2d(cephes_exp_q0, 3.00198505138664455042e-6);
190
+ _EIGEN_DECLARE_CONST_Packet2d(cephes_exp_q1, 2.52448340349684104192e-3);
191
+ _EIGEN_DECLARE_CONST_Packet2d(cephes_exp_q2, 2.27265548208155028766e-1);
192
+ _EIGEN_DECLARE_CONST_Packet2d(cephes_exp_q3, 2.00000000000000000009e0);
193
+
194
+ _EIGEN_DECLARE_CONST_Packet2d(cephes_exp_C1, 0.693145751953125);
195
+ _EIGEN_DECLARE_CONST_Packet2d(cephes_exp_C2, 1.42860682030941723212e-6);
196
+ static const __m128i p4i_1023_0 = _mm_setr_epi32(1023, 1023, 0, 0);
197
+
198
+ Packet2d tmp, fx;
199
+ Packet4i emm0;
200
+
201
+ // clamp x
202
+ x = pmax(pmin(x, p2d_exp_hi), p2d_exp_lo);
203
+ /* express exp(x) as exp(g + n*log(2)) */
204
+ fx = pmadd(p2d_cephes_LOG2EF, x, p2d_half);
205
+
206
+ #ifdef EIGEN_VECTORIZE_SSE4_1
207
+ fx = _mm_floor_pd(fx);
208
+ #else
209
+ emm0 = _mm_cvttpd_epi32(fx);
210
+ tmp = _mm_cvtepi32_pd(emm0);
211
+ /* if greater, substract 1 */
212
+ Packet2d mask = _mm_cmpgt_pd(tmp, fx);
213
+ mask = _mm_and_pd(mask, p2d_1);
214
+ fx = psub(tmp, mask);
215
+ #endif
216
+
217
+ tmp = pmul(fx, p2d_cephes_exp_C1);
218
+ Packet2d z = pmul(fx, p2d_cephes_exp_C2);
219
+ x = psub(x, tmp);
220
+ x = psub(x, z);
221
+
222
+ Packet2d x2 = pmul(x,x);
223
+
224
+ Packet2d px = p2d_cephes_exp_p0;
225
+ px = pmadd(px, x2, p2d_cephes_exp_p1);
226
+ px = pmadd(px, x2, p2d_cephes_exp_p2);
227
+ px = pmul (px, x);
228
+
229
+ Packet2d qx = p2d_cephes_exp_q0;
230
+ qx = pmadd(qx, x2, p2d_cephes_exp_q1);
231
+ qx = pmadd(qx, x2, p2d_cephes_exp_q2);
232
+ qx = pmadd(qx, x2, p2d_cephes_exp_q3);
233
+
234
+ x = pdiv(px,psub(qx,px));
235
+ x = pmadd(p2d_2,x,p2d_1);
236
+
237
+ // build 2^n
238
+ emm0 = _mm_cvttpd_epi32(fx);
239
+ emm0 = _mm_add_epi32(emm0, p4i_1023_0);
240
+ emm0 = _mm_slli_epi32(emm0, 20);
241
+ emm0 = _mm_shuffle_epi32(emm0, _MM_SHUFFLE(1,2,0,3));
242
+ return pmax(pmul(x, Packet2d(_mm_castsi128_pd(emm0))), _x);
243
+ }
244
+
245
+ /* evaluation of 4 sines at onces, using SSE2 intrinsics.
246
+
247
+ The code is the exact rewriting of the cephes sinf function.
248
+ Precision is excellent as long as x < 8192 (I did not bother to
249
+ take into account the special handling they have for greater values
250
+ -- it does not return garbage for arguments over 8192, though, but
251
+ the extra precision is missing).
252
+
253
+ Note that it is such that sinf((float)M_PI) = 8.74e-8, which is the
254
+ surprising but correct result.
255
+ */
256
+
257
+ template<> EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
258
+ Packet4f psin<Packet4f>(const Packet4f& _x)
259
+ {
260
+ Packet4f x = _x;
261
+ _EIGEN_DECLARE_CONST_Packet4f(1 , 1.0f);
262
+ _EIGEN_DECLARE_CONST_Packet4f(half, 0.5f);
263
+
264
+ _EIGEN_DECLARE_CONST_Packet4i(1, 1);
265
+ _EIGEN_DECLARE_CONST_Packet4i(not1, ~1);
266
+ _EIGEN_DECLARE_CONST_Packet4i(2, 2);
267
+ _EIGEN_DECLARE_CONST_Packet4i(4, 4);
268
+
269
+ _EIGEN_DECLARE_CONST_Packet4f_FROM_INT(sign_mask, 0x80000000);
270
+
271
+ _EIGEN_DECLARE_CONST_Packet4f(minus_cephes_DP1,-0.78515625f);
272
+ _EIGEN_DECLARE_CONST_Packet4f(minus_cephes_DP2, -2.4187564849853515625e-4f);
273
+ _EIGEN_DECLARE_CONST_Packet4f(minus_cephes_DP3, -3.77489497744594108e-8f);
274
+ _EIGEN_DECLARE_CONST_Packet4f(sincof_p0, -1.9515295891E-4f);
275
+ _EIGEN_DECLARE_CONST_Packet4f(sincof_p1, 8.3321608736E-3f);
276
+ _EIGEN_DECLARE_CONST_Packet4f(sincof_p2, -1.6666654611E-1f);
277
+ _EIGEN_DECLARE_CONST_Packet4f(coscof_p0, 2.443315711809948E-005f);
278
+ _EIGEN_DECLARE_CONST_Packet4f(coscof_p1, -1.388731625493765E-003f);
279
+ _EIGEN_DECLARE_CONST_Packet4f(coscof_p2, 4.166664568298827E-002f);
280
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_FOPI, 1.27323954473516f); // 4 / M_PI
281
+
282
+ Packet4f xmm1, xmm2, xmm3, sign_bit, y;
283
+
284
+ Packet4i emm0, emm2;
285
+ sign_bit = x;
286
+ /* take the absolute value */
287
+ x = pabs(x);
288
+
289
+ /* take the modulo */
290
+
291
+ /* extract the sign bit (upper one) */
292
+ sign_bit = _mm_and_ps(sign_bit, p4f_sign_mask);
293
+
294
+ /* scale by 4/Pi */
295
+ y = pmul(x, p4f_cephes_FOPI);
296
+
297
+ /* store the integer part of y in mm0 */
298
+ emm2 = _mm_cvttps_epi32(y);
299
+ /* j=(j+1) & (~1) (see the cephes sources) */
300
+ emm2 = _mm_add_epi32(emm2, p4i_1);
301
+ emm2 = _mm_and_si128(emm2, p4i_not1);
302
+ y = _mm_cvtepi32_ps(emm2);
303
+ /* get the swap sign flag */
304
+ emm0 = _mm_and_si128(emm2, p4i_4);
305
+ emm0 = _mm_slli_epi32(emm0, 29);
306
+ /* get the polynom selection mask
307
+ there is one polynom for 0 <= x <= Pi/4
308
+ and another one for Pi/4<x<=Pi/2
309
+
310
+ Both branches will be computed.
311
+ */
312
+ emm2 = _mm_and_si128(emm2, p4i_2);
313
+ emm2 = _mm_cmpeq_epi32(emm2, _mm_setzero_si128());
314
+
315
+ Packet4f swap_sign_bit = _mm_castsi128_ps(emm0);
316
+ Packet4f poly_mask = _mm_castsi128_ps(emm2);
317
+ sign_bit = _mm_xor_ps(sign_bit, swap_sign_bit);
318
+
319
+ /* The magic pass: "Extended precision modular arithmetic"
320
+ x = ((x - y * DP1) - y * DP2) - y * DP3; */
321
+ xmm1 = pmul(y, p4f_minus_cephes_DP1);
322
+ xmm2 = pmul(y, p4f_minus_cephes_DP2);
323
+ xmm3 = pmul(y, p4f_minus_cephes_DP3);
324
+ x = padd(x, xmm1);
325
+ x = padd(x, xmm2);
326
+ x = padd(x, xmm3);
327
+
328
+ /* Evaluate the first polynom (0 <= x <= Pi/4) */
329
+ y = p4f_coscof_p0;
330
+ Packet4f z = _mm_mul_ps(x,x);
331
+
332
+ y = pmadd(y, z, p4f_coscof_p1);
333
+ y = pmadd(y, z, p4f_coscof_p2);
334
+ y = pmul(y, z);
335
+ y = pmul(y, z);
336
+ Packet4f tmp = pmul(z, p4f_half);
337
+ y = psub(y, tmp);
338
+ y = padd(y, p4f_1);
339
+
340
+ /* Evaluate the second polynom (Pi/4 <= x <= 0) */
341
+
342
+ Packet4f y2 = p4f_sincof_p0;
343
+ y2 = pmadd(y2, z, p4f_sincof_p1);
344
+ y2 = pmadd(y2, z, p4f_sincof_p2);
345
+ y2 = pmul(y2, z);
346
+ y2 = pmul(y2, x);
347
+ y2 = padd(y2, x);
348
+
349
+ /* select the correct result from the two polynoms */
350
+ y2 = _mm_and_ps(poly_mask, y2);
351
+ y = _mm_andnot_ps(poly_mask, y);
352
+ y = _mm_or_ps(y,y2);
353
+ /* update the sign */
354
+ return _mm_xor_ps(y, sign_bit);
355
+ }
356
+
357
+ /* almost the same as psin */
358
+ template<> EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
359
+ Packet4f pcos<Packet4f>(const Packet4f& _x)
360
+ {
361
+ Packet4f x = _x;
362
+ _EIGEN_DECLARE_CONST_Packet4f(1 , 1.0f);
363
+ _EIGEN_DECLARE_CONST_Packet4f(half, 0.5f);
364
+
365
+ _EIGEN_DECLARE_CONST_Packet4i(1, 1);
366
+ _EIGEN_DECLARE_CONST_Packet4i(not1, ~1);
367
+ _EIGEN_DECLARE_CONST_Packet4i(2, 2);
368
+ _EIGEN_DECLARE_CONST_Packet4i(4, 4);
369
+
370
+ _EIGEN_DECLARE_CONST_Packet4f(minus_cephes_DP1,-0.78515625f);
371
+ _EIGEN_DECLARE_CONST_Packet4f(minus_cephes_DP2, -2.4187564849853515625e-4f);
372
+ _EIGEN_DECLARE_CONST_Packet4f(minus_cephes_DP3, -3.77489497744594108e-8f);
373
+ _EIGEN_DECLARE_CONST_Packet4f(sincof_p0, -1.9515295891E-4f);
374
+ _EIGEN_DECLARE_CONST_Packet4f(sincof_p1, 8.3321608736E-3f);
375
+ _EIGEN_DECLARE_CONST_Packet4f(sincof_p2, -1.6666654611E-1f);
376
+ _EIGEN_DECLARE_CONST_Packet4f(coscof_p0, 2.443315711809948E-005f);
377
+ _EIGEN_DECLARE_CONST_Packet4f(coscof_p1, -1.388731625493765E-003f);
378
+ _EIGEN_DECLARE_CONST_Packet4f(coscof_p2, 4.166664568298827E-002f);
379
+ _EIGEN_DECLARE_CONST_Packet4f(cephes_FOPI, 1.27323954473516f); // 4 / M_PI
380
+
381
+ Packet4f xmm1, xmm2, xmm3, y;
382
+ Packet4i emm0, emm2;
383
+
384
+ x = pabs(x);
385
+
386
+ /* scale by 4/Pi */
387
+ y = pmul(x, p4f_cephes_FOPI);
388
+
389
+ /* get the integer part of y */
390
+ emm2 = _mm_cvttps_epi32(y);
391
+ /* j=(j+1) & (~1) (see the cephes sources) */
392
+ emm2 = _mm_add_epi32(emm2, p4i_1);
393
+ emm2 = _mm_and_si128(emm2, p4i_not1);
394
+ y = _mm_cvtepi32_ps(emm2);
395
+
396
+ emm2 = _mm_sub_epi32(emm2, p4i_2);
397
+
398
+ /* get the swap sign flag */
399
+ emm0 = _mm_andnot_si128(emm2, p4i_4);
400
+ emm0 = _mm_slli_epi32(emm0, 29);
401
+ /* get the polynom selection mask */
402
+ emm2 = _mm_and_si128(emm2, p4i_2);
403
+ emm2 = _mm_cmpeq_epi32(emm2, _mm_setzero_si128());
404
+
405
+ Packet4f sign_bit = _mm_castsi128_ps(emm0);
406
+ Packet4f poly_mask = _mm_castsi128_ps(emm2);
407
+
408
+ /* The magic pass: "Extended precision modular arithmetic"
409
+ x = ((x - y * DP1) - y * DP2) - y * DP3; */
410
+ xmm1 = pmul(y, p4f_minus_cephes_DP1);
411
+ xmm2 = pmul(y, p4f_minus_cephes_DP2);
412
+ xmm3 = pmul(y, p4f_minus_cephes_DP3);
413
+ x = padd(x, xmm1);
414
+ x = padd(x, xmm2);
415
+ x = padd(x, xmm3);
416
+
417
+ /* Evaluate the first polynom (0 <= x <= Pi/4) */
418
+ y = p4f_coscof_p0;
419
+ Packet4f z = pmul(x,x);
420
+
421
+ y = pmadd(y,z,p4f_coscof_p1);
422
+ y = pmadd(y,z,p4f_coscof_p2);
423
+ y = pmul(y, z);
424
+ y = pmul(y, z);
425
+ Packet4f tmp = _mm_mul_ps(z, p4f_half);
426
+ y = psub(y, tmp);
427
+ y = padd(y, p4f_1);
428
+
429
+ /* Evaluate the second polynom (Pi/4 <= x <= 0) */
430
+ Packet4f y2 = p4f_sincof_p0;
431
+ y2 = pmadd(y2, z, p4f_sincof_p1);
432
+ y2 = pmadd(y2, z, p4f_sincof_p2);
433
+ y2 = pmul(y2, z);
434
+ y2 = pmadd(y2, x, x);
435
+
436
+ /* select the correct result from the two polynoms */
437
+ y2 = _mm_and_ps(poly_mask, y2);
438
+ y = _mm_andnot_ps(poly_mask, y);
439
+ y = _mm_or_ps(y,y2);
440
+
441
+ /* update the sign */
442
+ return _mm_xor_ps(y, sign_bit);
443
+ }
444
+
445
+ #if EIGEN_FAST_MATH
446
+
447
+ // Functions for sqrt.
448
+ // The EIGEN_FAST_MATH version uses the _mm_rsqrt_ps approximation and one step
449
+ // of Newton's method, at a cost of 1-2 bits of precision as opposed to the
450
+ // exact solution. It does not handle +inf, or denormalized numbers correctly.
451
+ // The main advantage of this approach is not just speed, but also the fact that
452
+ // it can be inlined and pipelined with other computations, further reducing its
453
+ // effective latency. This is similar to Quake3's fast inverse square root.
454
+ // For detail see here: http://www.beyond3d.com/content/articles/8/
455
+ template<> EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
456
+ Packet4f psqrt<Packet4f>(const Packet4f& _x)
457
+ {
458
+ Packet4f half = pmul(_x, pset1<Packet4f>(.5f));
459
+ Packet4f denormal_mask = _mm_and_ps(
460
+ _mm_cmpge_ps(_x, _mm_setzero_ps()),
461
+ _mm_cmplt_ps(_x, pset1<Packet4f>((std::numeric_limits<float>::min)())));
462
+
463
+ // Compute approximate reciprocal sqrt.
464
+ Packet4f x = _mm_rsqrt_ps(_x);
465
+ // Do a single step of Newton's iteration.
466
+ x = pmul(x, psub(pset1<Packet4f>(1.5f), pmul(half, pmul(x,x))));
467
+ // Flush results for denormals to zero.
468
+ return _mm_andnot_ps(denormal_mask, pmul(_x,x));
469
+ }
470
+
471
+ #else
472
+
473
+ template<>EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
474
+ Packet4f psqrt<Packet4f>(const Packet4f& x) { return _mm_sqrt_ps(x); }
475
+
476
+ #endif
477
+
478
+ template<> EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
479
+ Packet2d psqrt<Packet2d>(const Packet2d& x) { return _mm_sqrt_pd(x); }
480
+
481
+ #if EIGEN_FAST_MATH
482
+
483
+ template<> EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
484
+ Packet4f prsqrt<Packet4f>(const Packet4f& _x) {
485
+ _EIGEN_DECLARE_CONST_Packet4f_FROM_INT(inf, 0x7f800000);
486
+ _EIGEN_DECLARE_CONST_Packet4f_FROM_INT(nan, 0x7fc00000);
487
+ _EIGEN_DECLARE_CONST_Packet4f(one_point_five, 1.5f);
488
+ _EIGEN_DECLARE_CONST_Packet4f(minus_half, -0.5f);
489
+ _EIGEN_DECLARE_CONST_Packet4f_FROM_INT(flt_min, 0x00800000);
490
+
491
+ Packet4f neg_half = pmul(_x, p4f_minus_half);
492
+
493
+ // select only the inverse sqrt of positive normal inputs (denormals are
494
+ // flushed to zero and cause infs as well).
495
+ Packet4f le_zero_mask = _mm_cmple_ps(_x, p4f_flt_min);
496
+ Packet4f x = _mm_andnot_ps(le_zero_mask, _mm_rsqrt_ps(_x));
497
+
498
+ // Fill in NaNs and Infs for the negative/zero entries.
499
+ Packet4f neg_mask = _mm_cmplt_ps(_x, _mm_setzero_ps());
500
+ Packet4f zero_mask = _mm_andnot_ps(neg_mask, le_zero_mask);
501
+ Packet4f infs_and_nans = _mm_or_ps(_mm_and_ps(neg_mask, p4f_nan),
502
+ _mm_and_ps(zero_mask, p4f_inf));
503
+
504
+ // Do a single step of Newton's iteration.
505
+ x = pmul(x, pmadd(neg_half, pmul(x, x), p4f_one_point_five));
506
+
507
+ // Insert NaNs and Infs in all the right places.
508
+ return _mm_or_ps(x, infs_and_nans);
509
+ }
510
+
511
+ #else
512
+
513
+ template<> EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
514
+ Packet4f prsqrt<Packet4f>(const Packet4f& x) {
515
+ // Unfortunately we can't use the much faster mm_rqsrt_ps since it only provides an approximation.
516
+ return _mm_div_ps(pset1<Packet4f>(1.0f), _mm_sqrt_ps(x));
517
+ }
518
+
519
+ #endif
520
+
521
+ template<> EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED
522
+ Packet2d prsqrt<Packet2d>(const Packet2d& x) {
523
+ // Unfortunately we can't use the much faster mm_rqsrt_pd since it only provides an approximation.
524
+ return _mm_div_pd(pset1<Packet2d>(1.0), _mm_sqrt_pd(x));
525
+ }
526
+
527
+ // Hyperbolic Tangent function.
528
+ template <>
529
+ EIGEN_DEFINE_FUNCTION_ALLOWING_MULTIPLE_DEFINITIONS EIGEN_UNUSED Packet4f
530
+ ptanh<Packet4f>(const Packet4f& x) {
531
+ return internal::generic_fast_tanh_float(x);
532
+ }
533
+
534
+ } // end namespace internal
535
+
536
+ namespace numext {
537
+
538
+ template<>
539
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE
540
+ float sqrt(const float &x)
541
+ {
542
+ return internal::pfirst(internal::Packet4f(_mm_sqrt_ss(_mm_set_ss(x))));
543
+ }
544
+
545
+ template<>
546
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE
547
+ double sqrt(const double &x)
548
+ {
549
+ #if EIGEN_COMP_GNUC_STRICT
550
+ // This works around a GCC bug generating poor code for _mm_sqrt_pd
551
+ // See https://bitbucket.org/eigen/eigen/commits/14f468dba4d350d7c19c9b93072e19f7b3df563b
552
+ return internal::pfirst(internal::Packet2d(__builtin_ia32_sqrtsd(_mm_set_sd(x))));
553
+ #else
554
+ return internal::pfirst(internal::Packet2d(_mm_sqrt_pd(_mm_set_sd(x))));
555
+ #endif
556
+ }
557
+
558
+ } // end namespace numex
559
+
560
+ } // end namespace Eigen
561
+
562
+ #endif // EIGEN_MATH_FUNCTIONS_SSE_H