tomoto 0.1.0

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Files changed (420) hide show
  1. checksums.yaml +7 -0
  2. data/CHANGELOG.md +3 -0
  3. data/LICENSE.txt +22 -0
  4. data/README.md +123 -0
  5. data/ext/tomoto/ext.cpp +245 -0
  6. data/ext/tomoto/extconf.rb +28 -0
  7. data/lib/tomoto.rb +12 -0
  8. data/lib/tomoto/ct.rb +11 -0
  9. data/lib/tomoto/hdp.rb +11 -0
  10. data/lib/tomoto/lda.rb +67 -0
  11. data/lib/tomoto/version.rb +3 -0
  12. data/vendor/EigenRand/EigenRand/Core.h +1139 -0
  13. data/vendor/EigenRand/EigenRand/Dists/Basic.h +111 -0
  14. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +877 -0
  15. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +108 -0
  16. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +626 -0
  17. data/vendor/EigenRand/EigenRand/EigenRand +19 -0
  18. data/vendor/EigenRand/EigenRand/Macro.h +24 -0
  19. data/vendor/EigenRand/EigenRand/MorePacketMath.h +978 -0
  20. data/vendor/EigenRand/EigenRand/PacketFilter.h +286 -0
  21. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +624 -0
  22. data/vendor/EigenRand/EigenRand/RandUtils.h +413 -0
  23. data/vendor/EigenRand/EigenRand/doc.h +220 -0
  24. data/vendor/EigenRand/LICENSE +21 -0
  25. data/vendor/EigenRand/README.md +288 -0
  26. data/vendor/eigen/COPYING.BSD +26 -0
  27. data/vendor/eigen/COPYING.GPL +674 -0
  28. data/vendor/eigen/COPYING.LGPL +502 -0
  29. data/vendor/eigen/COPYING.MINPACK +52 -0
  30. data/vendor/eigen/COPYING.MPL2 +373 -0
  31. data/vendor/eigen/COPYING.README +18 -0
  32. data/vendor/eigen/Eigen/CMakeLists.txt +19 -0
  33. data/vendor/eigen/Eigen/Cholesky +46 -0
  34. data/vendor/eigen/Eigen/CholmodSupport +48 -0
  35. data/vendor/eigen/Eigen/Core +537 -0
  36. data/vendor/eigen/Eigen/Dense +7 -0
  37. data/vendor/eigen/Eigen/Eigen +2 -0
  38. data/vendor/eigen/Eigen/Eigenvalues +61 -0
  39. data/vendor/eigen/Eigen/Geometry +62 -0
  40. data/vendor/eigen/Eigen/Householder +30 -0
  41. data/vendor/eigen/Eigen/IterativeLinearSolvers +48 -0
  42. data/vendor/eigen/Eigen/Jacobi +33 -0
  43. data/vendor/eigen/Eigen/LU +50 -0
  44. data/vendor/eigen/Eigen/MetisSupport +35 -0
  45. data/vendor/eigen/Eigen/OrderingMethods +73 -0
  46. data/vendor/eigen/Eigen/PaStiXSupport +48 -0
  47. data/vendor/eigen/Eigen/PardisoSupport +35 -0
  48. data/vendor/eigen/Eigen/QR +51 -0
  49. data/vendor/eigen/Eigen/QtAlignedMalloc +40 -0
  50. data/vendor/eigen/Eigen/SPQRSupport +34 -0
  51. data/vendor/eigen/Eigen/SVD +51 -0
  52. data/vendor/eigen/Eigen/Sparse +36 -0
  53. data/vendor/eigen/Eigen/SparseCholesky +45 -0
  54. data/vendor/eigen/Eigen/SparseCore +69 -0
  55. data/vendor/eigen/Eigen/SparseLU +46 -0
  56. data/vendor/eigen/Eigen/SparseQR +37 -0
  57. data/vendor/eigen/Eigen/StdDeque +27 -0
  58. data/vendor/eigen/Eigen/StdList +26 -0
  59. data/vendor/eigen/Eigen/StdVector +27 -0
  60. data/vendor/eigen/Eigen/SuperLUSupport +64 -0
  61. data/vendor/eigen/Eigen/UmfPackSupport +40 -0
  62. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +673 -0
  63. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +542 -0
  64. data/vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  65. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +639 -0
  66. data/vendor/eigen/Eigen/src/Core/Array.h +329 -0
  67. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +226 -0
  68. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +209 -0
  69. data/vendor/eigen/Eigen/src/Core/Assign.h +90 -0
  70. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +935 -0
  71. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +178 -0
  72. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +353 -0
  73. data/vendor/eigen/Eigen/src/Core/Block.h +452 -0
  74. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +164 -0
  75. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +160 -0
  76. data/vendor/eigen/Eigen/src/Core/ConditionEstimator.h +175 -0
  77. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +1688 -0
  78. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +127 -0
  79. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +184 -0
  80. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +866 -0
  81. data/vendor/eigen/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  82. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +128 -0
  84. data/vendor/eigen/Eigen/src/Core/DenseBase.h +611 -0
  85. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +681 -0
  86. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +570 -0
  87. data/vendor/eigen/Eigen/src/Core/Diagonal.h +260 -0
  88. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +343 -0
  89. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +28 -0
  90. data/vendor/eigen/Eigen/src/Core/Dot.h +318 -0
  91. data/vendor/eigen/Eigen/src/Core/EigenBase.h +159 -0
  92. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +146 -0
  93. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +155 -0
  94. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +455 -0
  95. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +593 -0
  96. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +187 -0
  97. data/vendor/eigen/Eigen/src/Core/IO.h +225 -0
  98. data/vendor/eigen/Eigen/src/Core/Inverse.h +118 -0
  99. data/vendor/eigen/Eigen/src/Core/Map.h +171 -0
  100. data/vendor/eigen/Eigen/src/Core/MapBase.h +303 -0
  101. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +1415 -0
  102. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +101 -0
  103. data/vendor/eigen/Eigen/src/Core/Matrix.h +459 -0
  104. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +529 -0
  105. data/vendor/eigen/Eigen/src/Core/NestByValue.h +110 -0
  106. data/vendor/eigen/Eigen/src/Core/NoAlias.h +108 -0
  107. data/vendor/eigen/Eigen/src/Core/NumTraits.h +248 -0
  108. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +633 -0
  109. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +1035 -0
  110. data/vendor/eigen/Eigen/src/Core/Product.h +186 -0
  111. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +1112 -0
  112. data/vendor/eigen/Eigen/src/Core/Random.h +182 -0
  113. data/vendor/eigen/Eigen/src/Core/Redux.h +505 -0
  114. data/vendor/eigen/Eigen/src/Core/Ref.h +283 -0
  115. data/vendor/eigen/Eigen/src/Core/Replicate.h +142 -0
  116. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +117 -0
  117. data/vendor/eigen/Eigen/src/Core/Reverse.h +211 -0
  118. data/vendor/eigen/Eigen/src/Core/Select.h +162 -0
  119. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +352 -0
  120. data/vendor/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  121. data/vendor/eigen/Eigen/src/Core/Solve.h +188 -0
  122. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +235 -0
  123. data/vendor/eigen/Eigen/src/Core/SolverBase.h +130 -0
  124. data/vendor/eigen/Eigen/src/Core/StableNorm.h +221 -0
  125. data/vendor/eigen/Eigen/src/Core/Stride.h +111 -0
  126. data/vendor/eigen/Eigen/src/Core/Swap.h +67 -0
  127. data/vendor/eigen/Eigen/src/Core/Transpose.h +403 -0
  128. data/vendor/eigen/Eigen/src/Core/Transpositions.h +407 -0
  129. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +983 -0
  130. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +96 -0
  131. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +695 -0
  132. data/vendor/eigen/Eigen/src/Core/Visitor.h +273 -0
  133. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +451 -0
  134. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +439 -0
  135. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +637 -0
  136. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +51 -0
  137. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +391 -0
  138. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1316 -0
  139. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +430 -0
  140. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +322 -0
  141. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +1061 -0
  142. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +103 -0
  143. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +674 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h +91 -0
  145. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +333 -0
  146. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +1124 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +212 -0
  148. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +29 -0
  149. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +49 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +490 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +91 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +760 -0
  153. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +471 -0
  154. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +562 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +895 -0
  156. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +77 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +397 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +137 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +945 -0
  160. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +168 -0
  161. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +475 -0
  162. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +188 -0
  163. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +136 -0
  164. data/vendor/eigen/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  165. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +792 -0
  166. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2156 -0
  167. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +492 -0
  168. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +311 -0
  169. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  170. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +122 -0
  171. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +619 -0
  172. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  173. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +163 -0
  174. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +521 -0
  175. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +287 -0
  176. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +260 -0
  177. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  178. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  179. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +93 -0
  180. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +466 -0
  181. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +315 -0
  182. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  183. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  184. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +335 -0
  185. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +163 -0
  186. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +145 -0
  187. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +398 -0
  188. data/vendor/eigen/Eigen/src/Core/util/Constants.h +547 -0
  189. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +83 -0
  190. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +302 -0
  191. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +130 -0
  192. data/vendor/eigen/Eigen/src/Core/util/Macros.h +1001 -0
  193. data/vendor/eigen/Eigen/src/Core/util/Memory.h +993 -0
  194. data/vendor/eigen/Eigen/src/Core/util/Meta.h +534 -0
  195. data/vendor/eigen/Eigen/src/Core/util/NonMPL2.h +3 -0
  196. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +27 -0
  197. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +218 -0
  198. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +821 -0
  199. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  200. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +459 -0
  201. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  202. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  203. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  204. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  205. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  206. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  207. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +654 -0
  208. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +546 -0
  209. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  210. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +870 -0
  211. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  212. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +556 -0
  213. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +392 -0
  214. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +247 -0
  215. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +114 -0
  216. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +497 -0
  217. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +282 -0
  218. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +234 -0
  219. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +195 -0
  220. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +814 -0
  221. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +199 -0
  222. data/vendor/eigen/Eigen/src/Geometry/RotationBase.h +206 -0
  223. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +170 -0
  224. data/vendor/eigen/Eigen/src/Geometry/Transform.h +1542 -0
  225. data/vendor/eigen/Eigen/src/Geometry/Translation.h +208 -0
  226. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +166 -0
  227. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +161 -0
  228. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +103 -0
  229. data/vendor/eigen/Eigen/src/Householder/Householder.h +172 -0
  230. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +470 -0
  231. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  232. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +228 -0
  233. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +246 -0
  234. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +400 -0
  235. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +462 -0
  236. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +394 -0
  237. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +216 -0
  238. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +115 -0
  239. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +462 -0
  240. data/vendor/eigen/Eigen/src/LU/Determinant.h +101 -0
  241. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +891 -0
  242. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +415 -0
  243. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +611 -0
  244. data/vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  245. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +338 -0
  246. data/vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  247. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +445 -0
  248. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +1843 -0
  249. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +157 -0
  250. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  251. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +543 -0
  252. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +653 -0
  253. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  254. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +562 -0
  255. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +676 -0
  256. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +409 -0
  257. data/vendor/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  258. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +313 -0
  259. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +1246 -0
  260. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +804 -0
  261. data/vendor/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  262. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +315 -0
  263. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  264. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +689 -0
  265. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +199 -0
  266. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +377 -0
  267. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +258 -0
  268. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  269. data/vendor/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  270. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +216 -0
  271. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +603 -0
  272. data/vendor/eigen/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  273. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +341 -0
  274. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +726 -0
  275. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +148 -0
  276. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +320 -0
  277. data/vendor/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  278. data/vendor/eigen/Eigen/src/SparseCore/SparseDot.h +98 -0
  279. data/vendor/eigen/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  280. data/vendor/eigen/Eigen/src/SparseCore/SparseMap.h +305 -0
  281. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +1403 -0
  282. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +405 -0
  283. data/vendor/eigen/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  284. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +169 -0
  285. data/vendor/eigen/Eigen/src/SparseCore/SparseRedux.h +49 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +397 -0
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +656 -0
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +178 -0
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +478 -0
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +253 -0
  295. data/vendor/eigen/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  296. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +773 -0
  297. data/vendor/eigen/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  298. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  299. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  300. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +301 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  307. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  308. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  309. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  310. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  311. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  312. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  313. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +745 -0
  314. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +126 -0
  315. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +106 -0
  316. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +131 -0
  317. data/vendor/eigen/Eigen/src/StlSupport/details.h +84 -0
  318. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +1027 -0
  319. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +506 -0
  320. data/vendor/eigen/Eigen/src/misc/Image.h +82 -0
  321. data/vendor/eigen/Eigen/src/misc/Kernel.h +79 -0
  322. data/vendor/eigen/Eigen/src/misc/RealSvd2x2.h +55 -0
  323. data/vendor/eigen/Eigen/src/misc/blas.h +440 -0
  324. data/vendor/eigen/Eigen/src/misc/lapack.h +152 -0
  325. data/vendor/eigen/Eigen/src/misc/lapacke.h +16291 -0
  326. data/vendor/eigen/Eigen/src/misc/lapacke_mangling.h +17 -0
  327. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +332 -0
  328. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +552 -0
  329. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +1058 -0
  330. data/vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  331. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +163 -0
  332. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  333. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +85 -0
  334. data/vendor/eigen/README.md +3 -0
  335. data/vendor/eigen/bench/README.txt +55 -0
  336. data/vendor/eigen/bench/btl/COPYING +340 -0
  337. data/vendor/eigen/bench/btl/README +154 -0
  338. data/vendor/eigen/bench/tensors/README +21 -0
  339. data/vendor/eigen/blas/README.txt +6 -0
  340. data/vendor/eigen/demos/mandelbrot/README +10 -0
  341. data/vendor/eigen/demos/mix_eigen_and_c/README +9 -0
  342. data/vendor/eigen/demos/opengl/README +13 -0
  343. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +1760 -0
  344. data/vendor/eigen/unsupported/README.txt +50 -0
  345. data/vendor/tomotopy/LICENSE +21 -0
  346. data/vendor/tomotopy/README.kr.rst +375 -0
  347. data/vendor/tomotopy/README.rst +382 -0
  348. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +362 -0
  349. data/vendor/tomotopy/src/Labeling/FoRelevance.h +88 -0
  350. data/vendor/tomotopy/src/Labeling/Labeler.h +50 -0
  351. data/vendor/tomotopy/src/TopicModel/CT.h +37 -0
  352. data/vendor/tomotopy/src/TopicModel/CTModel.cpp +13 -0
  353. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +293 -0
  354. data/vendor/tomotopy/src/TopicModel/DMR.h +51 -0
  355. data/vendor/tomotopy/src/TopicModel/DMRModel.cpp +13 -0
  356. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +374 -0
  357. data/vendor/tomotopy/src/TopicModel/DT.h +65 -0
  358. data/vendor/tomotopy/src/TopicModel/DTM.h +22 -0
  359. data/vendor/tomotopy/src/TopicModel/DTModel.cpp +15 -0
  360. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +572 -0
  361. data/vendor/tomotopy/src/TopicModel/GDMR.h +37 -0
  362. data/vendor/tomotopy/src/TopicModel/GDMRModel.cpp +14 -0
  363. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +485 -0
  364. data/vendor/tomotopy/src/TopicModel/HDP.h +74 -0
  365. data/vendor/tomotopy/src/TopicModel/HDPModel.cpp +13 -0
  366. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +592 -0
  367. data/vendor/tomotopy/src/TopicModel/HLDA.h +40 -0
  368. data/vendor/tomotopy/src/TopicModel/HLDAModel.cpp +13 -0
  369. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +681 -0
  370. data/vendor/tomotopy/src/TopicModel/HPA.h +27 -0
  371. data/vendor/tomotopy/src/TopicModel/HPAModel.cpp +21 -0
  372. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +588 -0
  373. data/vendor/tomotopy/src/TopicModel/LDA.h +144 -0
  374. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +442 -0
  375. data/vendor/tomotopy/src/TopicModel/LDAModel.cpp +13 -0
  376. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +1058 -0
  377. data/vendor/tomotopy/src/TopicModel/LLDA.h +45 -0
  378. data/vendor/tomotopy/src/TopicModel/LLDAModel.cpp +13 -0
  379. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +203 -0
  380. data/vendor/tomotopy/src/TopicModel/MGLDA.h +63 -0
  381. data/vendor/tomotopy/src/TopicModel/MGLDAModel.cpp +17 -0
  382. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +558 -0
  383. data/vendor/tomotopy/src/TopicModel/PA.h +43 -0
  384. data/vendor/tomotopy/src/TopicModel/PAModel.cpp +13 -0
  385. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +467 -0
  386. data/vendor/tomotopy/src/TopicModel/PLDA.h +17 -0
  387. data/vendor/tomotopy/src/TopicModel/PLDAModel.cpp +13 -0
  388. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +214 -0
  389. data/vendor/tomotopy/src/TopicModel/SLDA.h +54 -0
  390. data/vendor/tomotopy/src/TopicModel/SLDAModel.cpp +17 -0
  391. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +456 -0
  392. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +692 -0
  393. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +169 -0
  394. data/vendor/tomotopy/src/Utils/Dictionary.h +80 -0
  395. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +181 -0
  396. data/vendor/tomotopy/src/Utils/LBFGS.h +202 -0
  397. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBacktracking.h +120 -0
  398. data/vendor/tomotopy/src/Utils/LBFGS/LineSearchBracketing.h +122 -0
  399. data/vendor/tomotopy/src/Utils/LBFGS/Param.h +213 -0
  400. data/vendor/tomotopy/src/Utils/LUT.hpp +82 -0
  401. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +69 -0
  402. data/vendor/tomotopy/src/Utils/PolyaGamma.hpp +200 -0
  403. data/vendor/tomotopy/src/Utils/PolyaGammaHybrid.hpp +672 -0
  404. data/vendor/tomotopy/src/Utils/ThreadPool.hpp +150 -0
  405. data/vendor/tomotopy/src/Utils/Trie.hpp +220 -0
  406. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +94 -0
  407. data/vendor/tomotopy/src/Utils/Utils.hpp +337 -0
  408. data/vendor/tomotopy/src/Utils/avx_gamma.h +46 -0
  409. data/vendor/tomotopy/src/Utils/avx_mathfun.h +736 -0
  410. data/vendor/tomotopy/src/Utils/exception.h +28 -0
  411. data/vendor/tomotopy/src/Utils/math.h +281 -0
  412. data/vendor/tomotopy/src/Utils/rtnorm.hpp +2690 -0
  413. data/vendor/tomotopy/src/Utils/sample.hpp +192 -0
  414. data/vendor/tomotopy/src/Utils/serializer.hpp +695 -0
  415. data/vendor/tomotopy/src/Utils/slp.hpp +131 -0
  416. data/vendor/tomotopy/src/Utils/sse_gamma.h +48 -0
  417. data/vendor/tomotopy/src/Utils/sse_mathfun.h +710 -0
  418. data/vendor/tomotopy/src/Utils/text.hpp +49 -0
  419. data/vendor/tomotopy/src/Utils/tvector.hpp +543 -0
  420. metadata +531 -0
@@ -0,0 +1,283 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2012 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_REF_H
11
+ #define EIGEN_REF_H
12
+
13
+ namespace Eigen {
14
+
15
+ namespace internal {
16
+
17
+ template<typename _PlainObjectType, int _Options, typename _StrideType>
18
+ struct traits<Ref<_PlainObjectType, _Options, _StrideType> >
19
+ : public traits<Map<_PlainObjectType, _Options, _StrideType> >
20
+ {
21
+ typedef _PlainObjectType PlainObjectType;
22
+ typedef _StrideType StrideType;
23
+ enum {
24
+ Options = _Options,
25
+ Flags = traits<Map<_PlainObjectType, _Options, _StrideType> >::Flags | NestByRefBit,
26
+ Alignment = traits<Map<_PlainObjectType, _Options, _StrideType> >::Alignment
27
+ };
28
+
29
+ template<typename Derived> struct match {
30
+ enum {
31
+ HasDirectAccess = internal::has_direct_access<Derived>::ret,
32
+ StorageOrderMatch = PlainObjectType::IsVectorAtCompileTime || Derived::IsVectorAtCompileTime || ((PlainObjectType::Flags&RowMajorBit)==(Derived::Flags&RowMajorBit)),
33
+ InnerStrideMatch = int(StrideType::InnerStrideAtCompileTime)==int(Dynamic)
34
+ || int(StrideType::InnerStrideAtCompileTime)==int(Derived::InnerStrideAtCompileTime)
35
+ || (int(StrideType::InnerStrideAtCompileTime)==0 && int(Derived::InnerStrideAtCompileTime)==1),
36
+ OuterStrideMatch = Derived::IsVectorAtCompileTime
37
+ || int(StrideType::OuterStrideAtCompileTime)==int(Dynamic) || int(StrideType::OuterStrideAtCompileTime)==int(Derived::OuterStrideAtCompileTime),
38
+ // NOTE, this indirection of evaluator<Derived>::Alignment is needed
39
+ // to workaround a very strange bug in MSVC related to the instantiation
40
+ // of has_*ary_operator in evaluator<CwiseNullaryOp>.
41
+ // This line is surprisingly very sensitive. For instance, simply adding parenthesis
42
+ // as "DerivedAlignment = (int(evaluator<Derived>::Alignment))," will make MSVC fail...
43
+ DerivedAlignment = int(evaluator<Derived>::Alignment),
44
+ AlignmentMatch = (int(traits<PlainObjectType>::Alignment)==int(Unaligned)) || (DerivedAlignment >= int(Alignment)), // FIXME the first condition is not very clear, it should be replaced by the required alignment
45
+ ScalarTypeMatch = internal::is_same<typename PlainObjectType::Scalar, typename Derived::Scalar>::value,
46
+ MatchAtCompileTime = HasDirectAccess && StorageOrderMatch && InnerStrideMatch && OuterStrideMatch && AlignmentMatch && ScalarTypeMatch
47
+ };
48
+ typedef typename internal::conditional<MatchAtCompileTime,internal::true_type,internal::false_type>::type type;
49
+ };
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+
51
+ };
52
+
53
+ template<typename Derived>
54
+ struct traits<RefBase<Derived> > : public traits<Derived> {};
55
+
56
+ }
57
+
58
+ template<typename Derived> class RefBase
59
+ : public MapBase<Derived>
60
+ {
61
+ typedef typename internal::traits<Derived>::PlainObjectType PlainObjectType;
62
+ typedef typename internal::traits<Derived>::StrideType StrideType;
63
+
64
+ public:
65
+
66
+ typedef MapBase<Derived> Base;
67
+ EIGEN_DENSE_PUBLIC_INTERFACE(RefBase)
68
+
69
+ EIGEN_DEVICE_FUNC inline Index innerStride() const
70
+ {
71
+ return StrideType::InnerStrideAtCompileTime != 0 ? m_stride.inner() : 1;
72
+ }
73
+
74
+ EIGEN_DEVICE_FUNC inline Index outerStride() const
75
+ {
76
+ return StrideType::OuterStrideAtCompileTime != 0 ? m_stride.outer()
77
+ : IsVectorAtCompileTime ? this->size()
78
+ : int(Flags)&RowMajorBit ? this->cols()
79
+ : this->rows();
80
+ }
81
+
82
+ EIGEN_DEVICE_FUNC RefBase()
83
+ : Base(0,RowsAtCompileTime==Dynamic?0:RowsAtCompileTime,ColsAtCompileTime==Dynamic?0:ColsAtCompileTime),
84
+ // Stride<> does not allow default ctor for Dynamic strides, so let' initialize it with dummy values:
85
+ m_stride(StrideType::OuterStrideAtCompileTime==Dynamic?0:StrideType::OuterStrideAtCompileTime,
86
+ StrideType::InnerStrideAtCompileTime==Dynamic?0:StrideType::InnerStrideAtCompileTime)
87
+ {}
88
+
89
+ EIGEN_INHERIT_ASSIGNMENT_OPERATORS(RefBase)
90
+
91
+ protected:
92
+
93
+ typedef Stride<StrideType::OuterStrideAtCompileTime,StrideType::InnerStrideAtCompileTime> StrideBase;
94
+
95
+ template<typename Expression>
96
+ EIGEN_DEVICE_FUNC void construct(Expression& expr)
97
+ {
98
+ EIGEN_STATIC_ASSERT_SAME_MATRIX_SIZE(PlainObjectType,Expression);
99
+
100
+ if(PlainObjectType::RowsAtCompileTime==1)
101
+ {
102
+ eigen_assert(expr.rows()==1 || expr.cols()==1);
103
+ ::new (static_cast<Base*>(this)) Base(expr.data(), 1, expr.size());
104
+ }
105
+ else if(PlainObjectType::ColsAtCompileTime==1)
106
+ {
107
+ eigen_assert(expr.rows()==1 || expr.cols()==1);
108
+ ::new (static_cast<Base*>(this)) Base(expr.data(), expr.size(), 1);
109
+ }
110
+ else
111
+ ::new (static_cast<Base*>(this)) Base(expr.data(), expr.rows(), expr.cols());
112
+
113
+ if(Expression::IsVectorAtCompileTime && (!PlainObjectType::IsVectorAtCompileTime) && ((Expression::Flags&RowMajorBit)!=(PlainObjectType::Flags&RowMajorBit)))
114
+ ::new (&m_stride) StrideBase(expr.innerStride(), StrideType::InnerStrideAtCompileTime==0?0:1);
115
+ else
116
+ ::new (&m_stride) StrideBase(StrideType::OuterStrideAtCompileTime==0?0:expr.outerStride(),
117
+ StrideType::InnerStrideAtCompileTime==0?0:expr.innerStride());
118
+ }
119
+
120
+ StrideBase m_stride;
121
+ };
122
+
123
+ /** \class Ref
124
+ * \ingroup Core_Module
125
+ *
126
+ * \brief A matrix or vector expression mapping an existing expression
127
+ *
128
+ * \tparam PlainObjectType the equivalent matrix type of the mapped data
129
+ * \tparam Options specifies the pointer alignment in bytes. It can be: \c #Aligned128, , \c #Aligned64, \c #Aligned32, \c #Aligned16, \c #Aligned8 or \c #Unaligned.
130
+ * The default is \c #Unaligned.
131
+ * \tparam StrideType optionally specifies strides. By default, Ref implies a contiguous storage along the inner dimension (inner stride==1),
132
+ * but accepts a variable outer stride (leading dimension).
133
+ * This can be overridden by specifying strides.
134
+ * The type passed here must be a specialization of the Stride template, see examples below.
135
+ *
136
+ * This class provides a way to write non-template functions taking Eigen objects as parameters while limiting the number of copies.
137
+ * A Ref<> object can represent either a const expression or a l-value:
138
+ * \code
139
+ * // in-out argument:
140
+ * void foo1(Ref<VectorXf> x);
141
+ *
142
+ * // read-only const argument:
143
+ * void foo2(const Ref<const VectorXf>& x);
144
+ * \endcode
145
+ *
146
+ * In the in-out case, the input argument must satisfy the constraints of the actual Ref<> type, otherwise a compilation issue will be triggered.
147
+ * By default, a Ref<VectorXf> can reference any dense vector expression of float having a contiguous memory layout.
148
+ * Likewise, a Ref<MatrixXf> can reference any column-major dense matrix expression of float whose column's elements are contiguously stored with
149
+ * the possibility to have a constant space in-between each column, i.e. the inner stride must be equal to 1, but the outer stride (or leading dimension)
150
+ * can be greater than the number of rows.
151
+ *
152
+ * In the const case, if the input expression does not match the above requirement, then it is evaluated into a temporary before being passed to the function.
153
+ * Here are some examples:
154
+ * \code
155
+ * MatrixXf A;
156
+ * VectorXf a;
157
+ * foo1(a.head()); // OK
158
+ * foo1(A.col()); // OK
159
+ * foo1(A.row()); // Compilation error because here innerstride!=1
160
+ * foo2(A.row()); // Compilation error because A.row() is a 1xN object while foo2 is expecting a Nx1 object
161
+ * foo2(A.row().transpose()); // The row is copied into a contiguous temporary
162
+ * foo2(2*a); // The expression is evaluated into a temporary
163
+ * foo2(A.col().segment(2,4)); // No temporary
164
+ * \endcode
165
+ *
166
+ * The range of inputs that can be referenced without temporary can be enlarged using the last two template parameters.
167
+ * Here is an example accepting an innerstride!=1:
168
+ * \code
169
+ * // in-out argument:
170
+ * void foo3(Ref<VectorXf,0,InnerStride<> > x);
171
+ * foo3(A.row()); // OK
172
+ * \endcode
173
+ * The downside here is that the function foo3 might be significantly slower than foo1 because it won't be able to exploit vectorization, and will involve more
174
+ * expensive address computations even if the input is contiguously stored in memory. To overcome this issue, one might propose to overload internally calling a
175
+ * template function, e.g.:
176
+ * \code
177
+ * // in the .h:
178
+ * void foo(const Ref<MatrixXf>& A);
179
+ * void foo(const Ref<MatrixXf,0,Stride<> >& A);
180
+ *
181
+ * // in the .cpp:
182
+ * template<typename TypeOfA> void foo_impl(const TypeOfA& A) {
183
+ * ... // crazy code goes here
184
+ * }
185
+ * void foo(const Ref<MatrixXf>& A) { foo_impl(A); }
186
+ * void foo(const Ref<MatrixXf,0,Stride<> >& A) { foo_impl(A); }
187
+ * \endcode
188
+ *
189
+ *
190
+ * \sa PlainObjectBase::Map(), \ref TopicStorageOrders
191
+ */
192
+ template<typename PlainObjectType, int Options, typename StrideType> class Ref
193
+ : public RefBase<Ref<PlainObjectType, Options, StrideType> >
194
+ {
195
+ private:
196
+ typedef internal::traits<Ref> Traits;
197
+ template<typename Derived>
198
+ EIGEN_DEVICE_FUNC inline Ref(const PlainObjectBase<Derived>& expr,
199
+ typename internal::enable_if<bool(Traits::template match<Derived>::MatchAtCompileTime),Derived>::type* = 0);
200
+ public:
201
+
202
+ typedef RefBase<Ref> Base;
203
+ EIGEN_DENSE_PUBLIC_INTERFACE(Ref)
204
+
205
+
206
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
207
+ template<typename Derived>
208
+ EIGEN_DEVICE_FUNC inline Ref(PlainObjectBase<Derived>& expr,
209
+ typename internal::enable_if<bool(Traits::template match<Derived>::MatchAtCompileTime),Derived>::type* = 0)
210
+ {
211
+ EIGEN_STATIC_ASSERT(bool(Traits::template match<Derived>::MatchAtCompileTime), STORAGE_LAYOUT_DOES_NOT_MATCH);
212
+ Base::construct(expr.derived());
213
+ }
214
+ template<typename Derived>
215
+ EIGEN_DEVICE_FUNC inline Ref(const DenseBase<Derived>& expr,
216
+ typename internal::enable_if<bool(Traits::template match<Derived>::MatchAtCompileTime),Derived>::type* = 0)
217
+ #else
218
+ /** Implicit constructor from any dense expression */
219
+ template<typename Derived>
220
+ inline Ref(DenseBase<Derived>& expr)
221
+ #endif
222
+ {
223
+ EIGEN_STATIC_ASSERT(bool(internal::is_lvalue<Derived>::value), THIS_EXPRESSION_IS_NOT_A_LVALUE__IT_IS_READ_ONLY);
224
+ EIGEN_STATIC_ASSERT(bool(Traits::template match<Derived>::MatchAtCompileTime), STORAGE_LAYOUT_DOES_NOT_MATCH);
225
+ EIGEN_STATIC_ASSERT(!Derived::IsPlainObjectBase,THIS_EXPRESSION_IS_NOT_A_LVALUE__IT_IS_READ_ONLY);
226
+ Base::construct(expr.const_cast_derived());
227
+ }
228
+
229
+ EIGEN_INHERIT_ASSIGNMENT_OPERATORS(Ref)
230
+
231
+ };
232
+
233
+ // this is the const ref version
234
+ template<typename TPlainObjectType, int Options, typename StrideType> class Ref<const TPlainObjectType, Options, StrideType>
235
+ : public RefBase<Ref<const TPlainObjectType, Options, StrideType> >
236
+ {
237
+ typedef internal::traits<Ref> Traits;
238
+ public:
239
+
240
+ typedef RefBase<Ref> Base;
241
+ EIGEN_DENSE_PUBLIC_INTERFACE(Ref)
242
+
243
+ template<typename Derived>
244
+ EIGEN_DEVICE_FUNC inline Ref(const DenseBase<Derived>& expr,
245
+ typename internal::enable_if<bool(Traits::template match<Derived>::ScalarTypeMatch),Derived>::type* = 0)
246
+ {
247
+ // std::cout << match_helper<Derived>::HasDirectAccess << "," << match_helper<Derived>::OuterStrideMatch << "," << match_helper<Derived>::InnerStrideMatch << "\n";
248
+ // std::cout << int(StrideType::OuterStrideAtCompileTime) << " - " << int(Derived::OuterStrideAtCompileTime) << "\n";
249
+ // std::cout << int(StrideType::InnerStrideAtCompileTime) << " - " << int(Derived::InnerStrideAtCompileTime) << "\n";
250
+ construct(expr.derived(), typename Traits::template match<Derived>::type());
251
+ }
252
+
253
+ EIGEN_DEVICE_FUNC inline Ref(const Ref& other) : Base(other) {
254
+ // copy constructor shall not copy the m_object, to avoid unnecessary malloc and copy
255
+ }
256
+
257
+ template<typename OtherRef>
258
+ EIGEN_DEVICE_FUNC inline Ref(const RefBase<OtherRef>& other) {
259
+ construct(other.derived(), typename Traits::template match<OtherRef>::type());
260
+ }
261
+
262
+ protected:
263
+
264
+ template<typename Expression>
265
+ EIGEN_DEVICE_FUNC void construct(const Expression& expr,internal::true_type)
266
+ {
267
+ Base::construct(expr);
268
+ }
269
+
270
+ template<typename Expression>
271
+ EIGEN_DEVICE_FUNC void construct(const Expression& expr, internal::false_type)
272
+ {
273
+ internal::call_assignment_no_alias(m_object,expr,internal::assign_op<Scalar,Scalar>());
274
+ Base::construct(m_object);
275
+ }
276
+
277
+ protected:
278
+ TPlainObjectType m_object;
279
+ };
280
+
281
+ } // end namespace Eigen
282
+
283
+ #endif // EIGEN_REF_H
@@ -0,0 +1,142 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2009-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_REPLICATE_H
11
+ #define EIGEN_REPLICATE_H
12
+
13
+ namespace Eigen {
14
+
15
+ namespace internal {
16
+ template<typename MatrixType,int RowFactor,int ColFactor>
17
+ struct traits<Replicate<MatrixType,RowFactor,ColFactor> >
18
+ : traits<MatrixType>
19
+ {
20
+ typedef typename MatrixType::Scalar Scalar;
21
+ typedef typename traits<MatrixType>::StorageKind StorageKind;
22
+ typedef typename traits<MatrixType>::XprKind XprKind;
23
+ typedef typename ref_selector<MatrixType>::type MatrixTypeNested;
24
+ typedef typename remove_reference<MatrixTypeNested>::type _MatrixTypeNested;
25
+ enum {
26
+ RowsAtCompileTime = RowFactor==Dynamic || int(MatrixType::RowsAtCompileTime)==Dynamic
27
+ ? Dynamic
28
+ : RowFactor * MatrixType::RowsAtCompileTime,
29
+ ColsAtCompileTime = ColFactor==Dynamic || int(MatrixType::ColsAtCompileTime)==Dynamic
30
+ ? Dynamic
31
+ : ColFactor * MatrixType::ColsAtCompileTime,
32
+ //FIXME we don't propagate the max sizes !!!
33
+ MaxRowsAtCompileTime = RowsAtCompileTime,
34
+ MaxColsAtCompileTime = ColsAtCompileTime,
35
+ IsRowMajor = MaxRowsAtCompileTime==1 && MaxColsAtCompileTime!=1 ? 1
36
+ : MaxColsAtCompileTime==1 && MaxRowsAtCompileTime!=1 ? 0
37
+ : (MatrixType::Flags & RowMajorBit) ? 1 : 0,
38
+
39
+ // FIXME enable DirectAccess with negative strides?
40
+ Flags = IsRowMajor ? RowMajorBit : 0
41
+ };
42
+ };
43
+ }
44
+
45
+ /**
46
+ * \class Replicate
47
+ * \ingroup Core_Module
48
+ *
49
+ * \brief Expression of the multiple replication of a matrix or vector
50
+ *
51
+ * \tparam MatrixType the type of the object we are replicating
52
+ * \tparam RowFactor number of repetitions at compile time along the vertical direction, can be Dynamic.
53
+ * \tparam ColFactor number of repetitions at compile time along the horizontal direction, can be Dynamic.
54
+ *
55
+ * This class represents an expression of the multiple replication of a matrix or vector.
56
+ * It is the return type of DenseBase::replicate() and most of the time
57
+ * this is the only way it is used.
58
+ *
59
+ * \sa DenseBase::replicate()
60
+ */
61
+ template<typename MatrixType,int RowFactor,int ColFactor> class Replicate
62
+ : public internal::dense_xpr_base< Replicate<MatrixType,RowFactor,ColFactor> >::type
63
+ {
64
+ typedef typename internal::traits<Replicate>::MatrixTypeNested MatrixTypeNested;
65
+ typedef typename internal::traits<Replicate>::_MatrixTypeNested _MatrixTypeNested;
66
+ public:
67
+
68
+ typedef typename internal::dense_xpr_base<Replicate>::type Base;
69
+ EIGEN_DENSE_PUBLIC_INTERFACE(Replicate)
70
+ typedef typename internal::remove_all<MatrixType>::type NestedExpression;
71
+
72
+ template<typename OriginalMatrixType>
73
+ EIGEN_DEVICE_FUNC
74
+ inline explicit Replicate(const OriginalMatrixType& matrix)
75
+ : m_matrix(matrix), m_rowFactor(RowFactor), m_colFactor(ColFactor)
76
+ {
77
+ EIGEN_STATIC_ASSERT((internal::is_same<typename internal::remove_const<MatrixType>::type,OriginalMatrixType>::value),
78
+ THE_MATRIX_OR_EXPRESSION_THAT_YOU_PASSED_DOES_NOT_HAVE_THE_EXPECTED_TYPE)
79
+ eigen_assert(RowFactor!=Dynamic && ColFactor!=Dynamic);
80
+ }
81
+
82
+ template<typename OriginalMatrixType>
83
+ EIGEN_DEVICE_FUNC
84
+ inline Replicate(const OriginalMatrixType& matrix, Index rowFactor, Index colFactor)
85
+ : m_matrix(matrix), m_rowFactor(rowFactor), m_colFactor(colFactor)
86
+ {
87
+ EIGEN_STATIC_ASSERT((internal::is_same<typename internal::remove_const<MatrixType>::type,OriginalMatrixType>::value),
88
+ THE_MATRIX_OR_EXPRESSION_THAT_YOU_PASSED_DOES_NOT_HAVE_THE_EXPECTED_TYPE)
89
+ }
90
+
91
+ EIGEN_DEVICE_FUNC
92
+ inline Index rows() const { return m_matrix.rows() * m_rowFactor.value(); }
93
+ EIGEN_DEVICE_FUNC
94
+ inline Index cols() const { return m_matrix.cols() * m_colFactor.value(); }
95
+
96
+ EIGEN_DEVICE_FUNC
97
+ const _MatrixTypeNested& nestedExpression() const
98
+ {
99
+ return m_matrix;
100
+ }
101
+
102
+ protected:
103
+ MatrixTypeNested m_matrix;
104
+ const internal::variable_if_dynamic<Index, RowFactor> m_rowFactor;
105
+ const internal::variable_if_dynamic<Index, ColFactor> m_colFactor;
106
+ };
107
+
108
+ /**
109
+ * \return an expression of the replication of \c *this
110
+ *
111
+ * Example: \include MatrixBase_replicate.cpp
112
+ * Output: \verbinclude MatrixBase_replicate.out
113
+ *
114
+ * \sa VectorwiseOp::replicate(), DenseBase::replicate(Index,Index), class Replicate
115
+ */
116
+ template<typename Derived>
117
+ template<int RowFactor, int ColFactor>
118
+ const Replicate<Derived,RowFactor,ColFactor>
119
+ DenseBase<Derived>::replicate() const
120
+ {
121
+ return Replicate<Derived,RowFactor,ColFactor>(derived());
122
+ }
123
+
124
+ /**
125
+ * \return an expression of the replication of each column (or row) of \c *this
126
+ *
127
+ * Example: \include DirectionWise_replicate_int.cpp
128
+ * Output: \verbinclude DirectionWise_replicate_int.out
129
+ *
130
+ * \sa VectorwiseOp::replicate(), DenseBase::replicate(), class Replicate
131
+ */
132
+ template<typename ExpressionType, int Direction>
133
+ const typename VectorwiseOp<ExpressionType,Direction>::ReplicateReturnType
134
+ VectorwiseOp<ExpressionType,Direction>::replicate(Index factor) const
135
+ {
136
+ return typename VectorwiseOp<ExpressionType,Direction>::ReplicateReturnType
137
+ (_expression(),Direction==Vertical?factor:1,Direction==Horizontal?factor:1);
138
+ }
139
+
140
+ } // end namespace Eigen
141
+
142
+ #endif // EIGEN_REPLICATE_H
@@ -0,0 +1,117 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2009-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ // Copyright (C) 2009-2010 Benoit Jacob <jacob.benoit.1@gmail.com>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_RETURNBYVALUE_H
12
+ #define EIGEN_RETURNBYVALUE_H
13
+
14
+ namespace Eigen {
15
+
16
+ namespace internal {
17
+
18
+ template<typename Derived>
19
+ struct traits<ReturnByValue<Derived> >
20
+ : public traits<typename traits<Derived>::ReturnType>
21
+ {
22
+ enum {
23
+ // We're disabling the DirectAccess because e.g. the constructor of
24
+ // the Block-with-DirectAccess expression requires to have a coeffRef method.
25
+ // Also, we don't want to have to implement the stride stuff.
26
+ Flags = (traits<typename traits<Derived>::ReturnType>::Flags
27
+ | EvalBeforeNestingBit) & ~DirectAccessBit
28
+ };
29
+ };
30
+
31
+ /* The ReturnByValue object doesn't even have a coeff() method.
32
+ * So the only way that nesting it in an expression can work, is by evaluating it into a plain matrix.
33
+ * So internal::nested always gives the plain return matrix type.
34
+ *
35
+ * FIXME: I don't understand why we need this specialization: isn't this taken care of by the EvalBeforeNestingBit ??
36
+ * Answer: EvalBeforeNestingBit should be deprecated since we have the evaluators
37
+ */
38
+ template<typename Derived,int n,typename PlainObject>
39
+ struct nested_eval<ReturnByValue<Derived>, n, PlainObject>
40
+ {
41
+ typedef typename traits<Derived>::ReturnType type;
42
+ };
43
+
44
+ } // end namespace internal
45
+
46
+ /** \class ReturnByValue
47
+ * \ingroup Core_Module
48
+ *
49
+ */
50
+ template<typename Derived> class ReturnByValue
51
+ : public internal::dense_xpr_base< ReturnByValue<Derived> >::type, internal::no_assignment_operator
52
+ {
53
+ public:
54
+ typedef typename internal::traits<Derived>::ReturnType ReturnType;
55
+
56
+ typedef typename internal::dense_xpr_base<ReturnByValue>::type Base;
57
+ EIGEN_DENSE_PUBLIC_INTERFACE(ReturnByValue)
58
+
59
+ template<typename Dest>
60
+ EIGEN_DEVICE_FUNC
61
+ inline void evalTo(Dest& dst) const
62
+ { static_cast<const Derived*>(this)->evalTo(dst); }
63
+ EIGEN_DEVICE_FUNC inline Index rows() const { return static_cast<const Derived*>(this)->rows(); }
64
+ EIGEN_DEVICE_FUNC inline Index cols() const { return static_cast<const Derived*>(this)->cols(); }
65
+
66
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
67
+ #define Unusable YOU_ARE_TRYING_TO_ACCESS_A_SINGLE_COEFFICIENT_IN_A_SPECIAL_EXPRESSION_WHERE_THAT_IS_NOT_ALLOWED_BECAUSE_THAT_WOULD_BE_INEFFICIENT
68
+ class Unusable{
69
+ Unusable(const Unusable&) {}
70
+ Unusable& operator=(const Unusable&) {return *this;}
71
+ };
72
+ const Unusable& coeff(Index) const { return *reinterpret_cast<const Unusable*>(this); }
73
+ const Unusable& coeff(Index,Index) const { return *reinterpret_cast<const Unusable*>(this); }
74
+ Unusable& coeffRef(Index) { return *reinterpret_cast<Unusable*>(this); }
75
+ Unusable& coeffRef(Index,Index) { return *reinterpret_cast<Unusable*>(this); }
76
+ #undef Unusable
77
+ #endif
78
+ };
79
+
80
+ template<typename Derived>
81
+ template<typename OtherDerived>
82
+ Derived& DenseBase<Derived>::operator=(const ReturnByValue<OtherDerived>& other)
83
+ {
84
+ other.evalTo(derived());
85
+ return derived();
86
+ }
87
+
88
+ namespace internal {
89
+
90
+ // Expression is evaluated in a temporary; default implementation of Assignment is bypassed so that
91
+ // when a ReturnByValue expression is assigned, the evaluator is not constructed.
92
+ // TODO: Finalize port to new regime; ReturnByValue should not exist in the expression world
93
+
94
+ template<typename Derived>
95
+ struct evaluator<ReturnByValue<Derived> >
96
+ : public evaluator<typename internal::traits<Derived>::ReturnType>
97
+ {
98
+ typedef ReturnByValue<Derived> XprType;
99
+ typedef typename internal::traits<Derived>::ReturnType PlainObject;
100
+ typedef evaluator<PlainObject> Base;
101
+
102
+ EIGEN_DEVICE_FUNC explicit evaluator(const XprType& xpr)
103
+ : m_result(xpr.rows(), xpr.cols())
104
+ {
105
+ ::new (static_cast<Base*>(this)) Base(m_result);
106
+ xpr.evalTo(m_result);
107
+ }
108
+
109
+ protected:
110
+ PlainObject m_result;
111
+ };
112
+
113
+ } // end namespace internal
114
+
115
+ } // end namespace Eigen
116
+
117
+ #endif // EIGEN_RETURNBYVALUE_H