umappp 0.1.2

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Files changed (395) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +25 -0
  3. data/README.md +110 -0
  4. data/ext/umappp/extconf.rb +25 -0
  5. data/ext/umappp/numo.hpp +867 -0
  6. data/ext/umappp/umappp.cpp +225 -0
  7. data/lib/umappp/version.rb +5 -0
  8. data/lib/umappp.rb +41 -0
  9. data/vendor/Eigen/Cholesky +45 -0
  10. data/vendor/Eigen/CholmodSupport +48 -0
  11. data/vendor/Eigen/Core +384 -0
  12. data/vendor/Eigen/Dense +7 -0
  13. data/vendor/Eigen/Eigen +2 -0
  14. data/vendor/Eigen/Eigenvalues +60 -0
  15. data/vendor/Eigen/Geometry +59 -0
  16. data/vendor/Eigen/Householder +29 -0
  17. data/vendor/Eigen/IterativeLinearSolvers +48 -0
  18. data/vendor/Eigen/Jacobi +32 -0
  19. data/vendor/Eigen/KLUSupport +41 -0
  20. data/vendor/Eigen/LU +47 -0
  21. data/vendor/Eigen/MetisSupport +35 -0
  22. data/vendor/Eigen/OrderingMethods +70 -0
  23. data/vendor/Eigen/PaStiXSupport +49 -0
  24. data/vendor/Eigen/PardisoSupport +35 -0
  25. data/vendor/Eigen/QR +50 -0
  26. data/vendor/Eigen/QtAlignedMalloc +39 -0
  27. data/vendor/Eigen/SPQRSupport +34 -0
  28. data/vendor/Eigen/SVD +50 -0
  29. data/vendor/Eigen/Sparse +34 -0
  30. data/vendor/Eigen/SparseCholesky +37 -0
  31. data/vendor/Eigen/SparseCore +69 -0
  32. data/vendor/Eigen/SparseLU +50 -0
  33. data/vendor/Eigen/SparseQR +36 -0
  34. data/vendor/Eigen/StdDeque +27 -0
  35. data/vendor/Eigen/StdList +26 -0
  36. data/vendor/Eigen/StdVector +27 -0
  37. data/vendor/Eigen/SuperLUSupport +64 -0
  38. data/vendor/Eigen/UmfPackSupport +40 -0
  39. data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
  40. data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
  41. data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  42. data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
  43. data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
  44. data/vendor/Eigen/src/Core/Array.h +417 -0
  45. data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
  46. data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
  47. data/vendor/Eigen/src/Core/Assign.h +90 -0
  48. data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
  49. data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
  50. data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
  51. data/vendor/Eigen/src/Core/Block.h +448 -0
  52. data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
  53. data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
  54. data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
  55. data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
  56. data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
  57. data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
  58. data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
  59. data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  60. data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  61. data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
  62. data/vendor/Eigen/src/Core/DenseBase.h +701 -0
  63. data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
  64. data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
  65. data/vendor/Eigen/src/Core/Diagonal.h +258 -0
  66. data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
  67. data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
  68. data/vendor/Eigen/src/Core/Dot.h +318 -0
  69. data/vendor/Eigen/src/Core/EigenBase.h +160 -0
  70. data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
  71. data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
  72. data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
  73. data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
  74. data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
  75. data/vendor/Eigen/src/Core/IO.h +258 -0
  76. data/vendor/Eigen/src/Core/IndexedView.h +237 -0
  77. data/vendor/Eigen/src/Core/Inverse.h +117 -0
  78. data/vendor/Eigen/src/Core/Map.h +171 -0
  79. data/vendor/Eigen/src/Core/MapBase.h +310 -0
  80. data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
  81. data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
  82. data/vendor/Eigen/src/Core/Matrix.h +565 -0
  83. data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
  84. data/vendor/Eigen/src/Core/NestByValue.h +85 -0
  85. data/vendor/Eigen/src/Core/NoAlias.h +109 -0
  86. data/vendor/Eigen/src/Core/NumTraits.h +335 -0
  87. data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  88. data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
  89. data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
  90. data/vendor/Eigen/src/Core/Product.h +191 -0
  91. data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
  92. data/vendor/Eigen/src/Core/Random.h +218 -0
  93. data/vendor/Eigen/src/Core/Redux.h +515 -0
  94. data/vendor/Eigen/src/Core/Ref.h +381 -0
  95. data/vendor/Eigen/src/Core/Replicate.h +142 -0
  96. data/vendor/Eigen/src/Core/Reshaped.h +454 -0
  97. data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
  98. data/vendor/Eigen/src/Core/Reverse.h +217 -0
  99. data/vendor/Eigen/src/Core/Select.h +164 -0
  100. data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
  101. data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  102. data/vendor/Eigen/src/Core/Solve.h +188 -0
  103. data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
  104. data/vendor/Eigen/src/Core/SolverBase.h +168 -0
  105. data/vendor/Eigen/src/Core/StableNorm.h +251 -0
  106. data/vendor/Eigen/src/Core/StlIterators.h +463 -0
  107. data/vendor/Eigen/src/Core/Stride.h +116 -0
  108. data/vendor/Eigen/src/Core/Swap.h +68 -0
  109. data/vendor/Eigen/src/Core/Transpose.h +464 -0
  110. data/vendor/Eigen/src/Core/Transpositions.h +386 -0
  111. data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
  112. data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
  113. data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
  114. data/vendor/Eigen/src/Core/Visitor.h +381 -0
  115. data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
  116. data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
  117. data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
  118. data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
  119. data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  120. data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
  121. data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
  122. data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  123. data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
  124. data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
  125. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  126. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  127. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  128. data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
  129. data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
  130. data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  131. data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
  132. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  133. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  134. data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
  135. data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
  136. data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  137. data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
  138. data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  139. data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  140. data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  141. data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  142. data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  143. data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  144. data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
  145. data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  146. data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
  147. data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
  148. data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  149. data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
  150. data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
  151. data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
  152. data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
  153. data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  154. data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  155. data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  156. data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  157. data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  158. data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  159. data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  160. data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  161. data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
  162. data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
  163. data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
  164. data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
  165. data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
  166. data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
  167. data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
  168. data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  169. data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
  170. data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
  171. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
  172. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
  173. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  174. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
  175. data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
  176. data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  177. data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
  178. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
  179. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
  180. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
  181. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  182. data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  183. data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
  184. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
  185. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
  186. data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  187. data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  188. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
  189. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
  190. data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
  191. data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
  192. data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  193. data/vendor/Eigen/src/Core/util/Constants.h +563 -0
  194. data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
  195. data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
  196. data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  197. data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
  198. data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
  199. data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
  200. data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
  201. data/vendor/Eigen/src/Core/util/Meta.h +812 -0
  202. data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
  203. data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
  204. data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  205. data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
  206. data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  207. data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
  208. data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  209. data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
  210. data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  211. data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  212. data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  213. data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  214. data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  215. data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  216. data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
  217. data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
  218. data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  219. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
  220. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  221. data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
  222. data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
  223. data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
  224. data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
  225. data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
  226. data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
  227. data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
  228. data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
  229. data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
  230. data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
  231. data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
  232. data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
  233. data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
  234. data/vendor/Eigen/src/Geometry/Translation.h +202 -0
  235. data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
  236. data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  237. data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
  238. data/vendor/Eigen/src/Householder/Householder.h +176 -0
  239. data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
  240. data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  241. data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
  242. data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
  243. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
  244. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
  245. data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
  246. data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
  247. data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
  248. data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
  249. data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  250. data/vendor/Eigen/src/LU/Determinant.h +117 -0
  251. data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
  252. data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
  253. data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
  254. data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  255. data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
  256. data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  257. data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
  258. data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
  259. data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
  260. data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  261. data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
  262. data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
  263. data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  264. data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
  265. data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
  266. data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
  267. data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  268. data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
  269. data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
  270. data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
  271. data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  272. data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
  273. data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  274. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
  275. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
  276. data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
  277. data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
  278. data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  279. data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  280. data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
  281. data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
  282. data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  283. data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
  284. data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
  285. data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
  286. data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
  287. data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  288. data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
  289. data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  290. data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
  291. data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
  292. data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
  293. data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  294. data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
  295. data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
  296. data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
  297. data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
  298. data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  299. data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  300. data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  301. data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  302. data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
  303. data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
  304. data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
  305. data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  306. data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
  307. data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  308. data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  309. data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  310. data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
  311. data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  312. data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  313. data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  314. data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  315. data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  316. data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  317. data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  318. data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  319. data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  320. data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  321. data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  322. data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  323. data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
  324. data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
  325. data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
  326. data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
  327. data/vendor/Eigen/src/StlSupport/details.h +84 -0
  328. data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
  329. data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
  330. data/vendor/Eigen/src/misc/Image.h +82 -0
  331. data/vendor/Eigen/src/misc/Kernel.h +79 -0
  332. data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
  333. data/vendor/Eigen/src/misc/blas.h +440 -0
  334. data/vendor/Eigen/src/misc/lapack.h +152 -0
  335. data/vendor/Eigen/src/misc/lapacke.h +16292 -0
  336. data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
  337. data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
  338. data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
  339. data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
  340. data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  341. data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
  342. data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  343. data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  344. data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
  345. data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
  346. data/vendor/aarand/aarand.hpp +114 -0
  347. data/vendor/annoy/annoylib.h +1495 -0
  348. data/vendor/annoy/kissrandom.h +120 -0
  349. data/vendor/annoy/mman.h +242 -0
  350. data/vendor/hnswlib/bruteforce.h +152 -0
  351. data/vendor/hnswlib/hnswalg.h +1192 -0
  352. data/vendor/hnswlib/hnswlib.h +108 -0
  353. data/vendor/hnswlib/space_ip.h +282 -0
  354. data/vendor/hnswlib/space_l2.h +281 -0
  355. data/vendor/hnswlib/visited_list_pool.h +79 -0
  356. data/vendor/irlba/irlba.hpp +575 -0
  357. data/vendor/irlba/lanczos.hpp +212 -0
  358. data/vendor/irlba/parallel.hpp +474 -0
  359. data/vendor/irlba/utils.hpp +224 -0
  360. data/vendor/irlba/wrappers.hpp +228 -0
  361. data/vendor/kmeans/Base.hpp +75 -0
  362. data/vendor/kmeans/Details.hpp +79 -0
  363. data/vendor/kmeans/HartiganWong.hpp +492 -0
  364. data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
  365. data/vendor/kmeans/InitializeNone.hpp +44 -0
  366. data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
  367. data/vendor/kmeans/InitializeRandom.hpp +91 -0
  368. data/vendor/kmeans/Kmeans.hpp +161 -0
  369. data/vendor/kmeans/Lloyd.hpp +134 -0
  370. data/vendor/kmeans/MiniBatch.hpp +269 -0
  371. data/vendor/kmeans/QuickSearch.hpp +179 -0
  372. data/vendor/kmeans/compute_centroids.hpp +32 -0
  373. data/vendor/kmeans/compute_wcss.hpp +27 -0
  374. data/vendor/kmeans/is_edge_case.hpp +42 -0
  375. data/vendor/kmeans/random.hpp +55 -0
  376. data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
  377. data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
  378. data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
  379. data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
  380. data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
  381. data/vendor/knncolle/knncolle.hpp +34 -0
  382. data/vendor/knncolle/utils/Base.hpp +100 -0
  383. data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
  384. data/vendor/knncolle/utils/distances.hpp +98 -0
  385. data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
  386. data/vendor/powerit/PowerIterations.hpp +157 -0
  387. data/vendor/umappp/NeighborList.hpp +37 -0
  388. data/vendor/umappp/Umap.hpp +662 -0
  389. data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
  390. data/vendor/umappp/find_ab.hpp +157 -0
  391. data/vendor/umappp/neighbor_similarities.hpp +136 -0
  392. data/vendor/umappp/optimize_layout.hpp +285 -0
  393. data/vendor/umappp/spectral_init.hpp +181 -0
  394. data/vendor/umappp/umappp.hpp +13 -0
  395. metadata +465 -0
@@ -0,0 +1,544 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_SELFADJOINT_MATRIX_MATRIX_H
11
+ #define EIGEN_SELFADJOINT_MATRIX_MATRIX_H
12
+
13
+ namespace Eigen {
14
+
15
+ namespace internal {
16
+
17
+ // pack a selfadjoint block diagonal for use with the gebp_kernel
18
+ template<typename Scalar, typename Index, int Pack1, int Pack2_dummy, int StorageOrder>
19
+ struct symm_pack_lhs
20
+ {
21
+ template<int BlockRows> inline
22
+ void pack(Scalar* blockA, const const_blas_data_mapper<Scalar,Index,StorageOrder>& lhs, Index cols, Index i, Index& count)
23
+ {
24
+ // normal copy
25
+ for(Index k=0; k<i; k++)
26
+ for(Index w=0; w<BlockRows; w++)
27
+ blockA[count++] = lhs(i+w,k); // normal
28
+ // symmetric copy
29
+ Index h = 0;
30
+ for(Index k=i; k<i+BlockRows; k++)
31
+ {
32
+ for(Index w=0; w<h; w++)
33
+ blockA[count++] = numext::conj(lhs(k, i+w)); // transposed
34
+
35
+ blockA[count++] = numext::real(lhs(k,k)); // real (diagonal)
36
+
37
+ for(Index w=h+1; w<BlockRows; w++)
38
+ blockA[count++] = lhs(i+w, k); // normal
39
+ ++h;
40
+ }
41
+ // transposed copy
42
+ for(Index k=i+BlockRows; k<cols; k++)
43
+ for(Index w=0; w<BlockRows; w++)
44
+ blockA[count++] = numext::conj(lhs(k, i+w)); // transposed
45
+ }
46
+ void operator()(Scalar* blockA, const Scalar* _lhs, Index lhsStride, Index cols, Index rows)
47
+ {
48
+ typedef typename unpacket_traits<typename packet_traits<Scalar>::type>::half HalfPacket;
49
+ typedef typename unpacket_traits<typename unpacket_traits<typename packet_traits<Scalar>::type>::half>::half QuarterPacket;
50
+ enum { PacketSize = packet_traits<Scalar>::size,
51
+ HalfPacketSize = unpacket_traits<HalfPacket>::size,
52
+ QuarterPacketSize = unpacket_traits<QuarterPacket>::size,
53
+ HasHalf = (int)HalfPacketSize < (int)PacketSize,
54
+ HasQuarter = (int)QuarterPacketSize < (int)HalfPacketSize};
55
+
56
+ const_blas_data_mapper<Scalar,Index,StorageOrder> lhs(_lhs,lhsStride);
57
+ Index count = 0;
58
+ //Index peeled_mc3 = (rows/Pack1)*Pack1;
59
+
60
+ const Index peeled_mc3 = Pack1>=3*PacketSize ? (rows/(3*PacketSize))*(3*PacketSize) : 0;
61
+ const Index peeled_mc2 = Pack1>=2*PacketSize ? peeled_mc3+((rows-peeled_mc3)/(2*PacketSize))*(2*PacketSize) : 0;
62
+ const Index peeled_mc1 = Pack1>=1*PacketSize ? peeled_mc2+((rows-peeled_mc2)/(1*PacketSize))*(1*PacketSize) : 0;
63
+ const Index peeled_mc_half = Pack1>=HalfPacketSize ? peeled_mc1+((rows-peeled_mc1)/(HalfPacketSize))*(HalfPacketSize) : 0;
64
+ const Index peeled_mc_quarter = Pack1>=QuarterPacketSize ? peeled_mc_half+((rows-peeled_mc_half)/(QuarterPacketSize))*(QuarterPacketSize) : 0;
65
+
66
+ if(Pack1>=3*PacketSize)
67
+ for(Index i=0; i<peeled_mc3; i+=3*PacketSize)
68
+ pack<3*PacketSize>(blockA, lhs, cols, i, count);
69
+
70
+ if(Pack1>=2*PacketSize)
71
+ for(Index i=peeled_mc3; i<peeled_mc2; i+=2*PacketSize)
72
+ pack<2*PacketSize>(blockA, lhs, cols, i, count);
73
+
74
+ if(Pack1>=1*PacketSize)
75
+ for(Index i=peeled_mc2; i<peeled_mc1; i+=1*PacketSize)
76
+ pack<1*PacketSize>(blockA, lhs, cols, i, count);
77
+
78
+ if(HasHalf && Pack1>=HalfPacketSize)
79
+ for(Index i=peeled_mc1; i<peeled_mc_half; i+=HalfPacketSize)
80
+ pack<HalfPacketSize>(blockA, lhs, cols, i, count);
81
+
82
+ if(HasQuarter && Pack1>=QuarterPacketSize)
83
+ for(Index i=peeled_mc_half; i<peeled_mc_quarter; i+=QuarterPacketSize)
84
+ pack<QuarterPacketSize>(blockA, lhs, cols, i, count);
85
+
86
+ // do the same with mr==1
87
+ for(Index i=peeled_mc_quarter; i<rows; i++)
88
+ {
89
+ for(Index k=0; k<i; k++)
90
+ blockA[count++] = lhs(i, k); // normal
91
+
92
+ blockA[count++] = numext::real(lhs(i, i)); // real (diagonal)
93
+
94
+ for(Index k=i+1; k<cols; k++)
95
+ blockA[count++] = numext::conj(lhs(k, i)); // transposed
96
+ }
97
+ }
98
+ };
99
+
100
+ template<typename Scalar, typename Index, int nr, int StorageOrder>
101
+ struct symm_pack_rhs
102
+ {
103
+ enum { PacketSize = packet_traits<Scalar>::size };
104
+ void operator()(Scalar* blockB, const Scalar* _rhs, Index rhsStride, Index rows, Index cols, Index k2)
105
+ {
106
+ Index end_k = k2 + rows;
107
+ Index count = 0;
108
+ const_blas_data_mapper<Scalar,Index,StorageOrder> rhs(_rhs,rhsStride);
109
+ Index packet_cols8 = nr>=8 ? (cols/8) * 8 : 0;
110
+ Index packet_cols4 = nr>=4 ? (cols/4) * 4 : 0;
111
+
112
+ // first part: normal case
113
+ for(Index j2=0; j2<k2; j2+=nr)
114
+ {
115
+ for(Index k=k2; k<end_k; k++)
116
+ {
117
+ blockB[count+0] = rhs(k,j2+0);
118
+ blockB[count+1] = rhs(k,j2+1);
119
+ if (nr>=4)
120
+ {
121
+ blockB[count+2] = rhs(k,j2+2);
122
+ blockB[count+3] = rhs(k,j2+3);
123
+ }
124
+ if (nr>=8)
125
+ {
126
+ blockB[count+4] = rhs(k,j2+4);
127
+ blockB[count+5] = rhs(k,j2+5);
128
+ blockB[count+6] = rhs(k,j2+6);
129
+ blockB[count+7] = rhs(k,j2+7);
130
+ }
131
+ count += nr;
132
+ }
133
+ }
134
+
135
+ // second part: diagonal block
136
+ Index end8 = nr>=8 ? (std::min)(k2+rows,packet_cols8) : k2;
137
+ if(nr>=8)
138
+ {
139
+ for(Index j2=k2; j2<end8; j2+=8)
140
+ {
141
+ // again we can split vertically in three different parts (transpose, symmetric, normal)
142
+ // transpose
143
+ for(Index k=k2; k<j2; k++)
144
+ {
145
+ blockB[count+0] = numext::conj(rhs(j2+0,k));
146
+ blockB[count+1] = numext::conj(rhs(j2+1,k));
147
+ blockB[count+2] = numext::conj(rhs(j2+2,k));
148
+ blockB[count+3] = numext::conj(rhs(j2+3,k));
149
+ blockB[count+4] = numext::conj(rhs(j2+4,k));
150
+ blockB[count+5] = numext::conj(rhs(j2+5,k));
151
+ blockB[count+6] = numext::conj(rhs(j2+6,k));
152
+ blockB[count+7] = numext::conj(rhs(j2+7,k));
153
+ count += 8;
154
+ }
155
+ // symmetric
156
+ Index h = 0;
157
+ for(Index k=j2; k<j2+8; k++)
158
+ {
159
+ // normal
160
+ for (Index w=0 ; w<h; ++w)
161
+ blockB[count+w] = rhs(k,j2+w);
162
+
163
+ blockB[count+h] = numext::real(rhs(k,k));
164
+
165
+ // transpose
166
+ for (Index w=h+1 ; w<8; ++w)
167
+ blockB[count+w] = numext::conj(rhs(j2+w,k));
168
+ count += 8;
169
+ ++h;
170
+ }
171
+ // normal
172
+ for(Index k=j2+8; k<end_k; k++)
173
+ {
174
+ blockB[count+0] = rhs(k,j2+0);
175
+ blockB[count+1] = rhs(k,j2+1);
176
+ blockB[count+2] = rhs(k,j2+2);
177
+ blockB[count+3] = rhs(k,j2+3);
178
+ blockB[count+4] = rhs(k,j2+4);
179
+ blockB[count+5] = rhs(k,j2+5);
180
+ blockB[count+6] = rhs(k,j2+6);
181
+ blockB[count+7] = rhs(k,j2+7);
182
+ count += 8;
183
+ }
184
+ }
185
+ }
186
+ if(nr>=4)
187
+ {
188
+ for(Index j2=end8; j2<(std::min)(k2+rows,packet_cols4); j2+=4)
189
+ {
190
+ // again we can split vertically in three different parts (transpose, symmetric, normal)
191
+ // transpose
192
+ for(Index k=k2; k<j2; k++)
193
+ {
194
+ blockB[count+0] = numext::conj(rhs(j2+0,k));
195
+ blockB[count+1] = numext::conj(rhs(j2+1,k));
196
+ blockB[count+2] = numext::conj(rhs(j2+2,k));
197
+ blockB[count+3] = numext::conj(rhs(j2+3,k));
198
+ count += 4;
199
+ }
200
+ // symmetric
201
+ Index h = 0;
202
+ for(Index k=j2; k<j2+4; k++)
203
+ {
204
+ // normal
205
+ for (Index w=0 ; w<h; ++w)
206
+ blockB[count+w] = rhs(k,j2+w);
207
+
208
+ blockB[count+h] = numext::real(rhs(k,k));
209
+
210
+ // transpose
211
+ for (Index w=h+1 ; w<4; ++w)
212
+ blockB[count+w] = numext::conj(rhs(j2+w,k));
213
+ count += 4;
214
+ ++h;
215
+ }
216
+ // normal
217
+ for(Index k=j2+4; k<end_k; k++)
218
+ {
219
+ blockB[count+0] = rhs(k,j2+0);
220
+ blockB[count+1] = rhs(k,j2+1);
221
+ blockB[count+2] = rhs(k,j2+2);
222
+ blockB[count+3] = rhs(k,j2+3);
223
+ count += 4;
224
+ }
225
+ }
226
+ }
227
+
228
+ // third part: transposed
229
+ if(nr>=8)
230
+ {
231
+ for(Index j2=k2+rows; j2<packet_cols8; j2+=8)
232
+ {
233
+ for(Index k=k2; k<end_k; k++)
234
+ {
235
+ blockB[count+0] = numext::conj(rhs(j2+0,k));
236
+ blockB[count+1] = numext::conj(rhs(j2+1,k));
237
+ blockB[count+2] = numext::conj(rhs(j2+2,k));
238
+ blockB[count+3] = numext::conj(rhs(j2+3,k));
239
+ blockB[count+4] = numext::conj(rhs(j2+4,k));
240
+ blockB[count+5] = numext::conj(rhs(j2+5,k));
241
+ blockB[count+6] = numext::conj(rhs(j2+6,k));
242
+ blockB[count+7] = numext::conj(rhs(j2+7,k));
243
+ count += 8;
244
+ }
245
+ }
246
+ }
247
+ if(nr>=4)
248
+ {
249
+ for(Index j2=(std::max)(packet_cols8,k2+rows); j2<packet_cols4; j2+=4)
250
+ {
251
+ for(Index k=k2; k<end_k; k++)
252
+ {
253
+ blockB[count+0] = numext::conj(rhs(j2+0,k));
254
+ blockB[count+1] = numext::conj(rhs(j2+1,k));
255
+ blockB[count+2] = numext::conj(rhs(j2+2,k));
256
+ blockB[count+3] = numext::conj(rhs(j2+3,k));
257
+ count += 4;
258
+ }
259
+ }
260
+ }
261
+
262
+ // copy the remaining columns one at a time (=> the same with nr==1)
263
+ for(Index j2=packet_cols4; j2<cols; ++j2)
264
+ {
265
+ // transpose
266
+ Index half = (std::min)(end_k,j2);
267
+ for(Index k=k2; k<half; k++)
268
+ {
269
+ blockB[count] = numext::conj(rhs(j2,k));
270
+ count += 1;
271
+ }
272
+
273
+ if(half==j2 && half<k2+rows)
274
+ {
275
+ blockB[count] = numext::real(rhs(j2,j2));
276
+ count += 1;
277
+ }
278
+ else
279
+ half--;
280
+
281
+ // normal
282
+ for(Index k=half+1; k<k2+rows; k++)
283
+ {
284
+ blockB[count] = rhs(k,j2);
285
+ count += 1;
286
+ }
287
+ }
288
+ }
289
+ };
290
+
291
+ /* Optimized selfadjoint matrix * matrix (_SYMM) product built on top of
292
+ * the general matrix matrix product.
293
+ */
294
+ template <typename Scalar, typename Index,
295
+ int LhsStorageOrder, bool LhsSelfAdjoint, bool ConjugateLhs,
296
+ int RhsStorageOrder, bool RhsSelfAdjoint, bool ConjugateRhs,
297
+ int ResStorageOrder, int ResInnerStride>
298
+ struct product_selfadjoint_matrix;
299
+
300
+ template <typename Scalar, typename Index,
301
+ int LhsStorageOrder, bool LhsSelfAdjoint, bool ConjugateLhs,
302
+ int RhsStorageOrder, bool RhsSelfAdjoint, bool ConjugateRhs,
303
+ int ResInnerStride>
304
+ struct product_selfadjoint_matrix<Scalar,Index,LhsStorageOrder,LhsSelfAdjoint,ConjugateLhs, RhsStorageOrder,RhsSelfAdjoint,ConjugateRhs,RowMajor,ResInnerStride>
305
+ {
306
+
307
+ static EIGEN_STRONG_INLINE void run(
308
+ Index rows, Index cols,
309
+ const Scalar* lhs, Index lhsStride,
310
+ const Scalar* rhs, Index rhsStride,
311
+ Scalar* res, Index resIncr, Index resStride,
312
+ const Scalar& alpha, level3_blocking<Scalar,Scalar>& blocking)
313
+ {
314
+ product_selfadjoint_matrix<Scalar, Index,
315
+ EIGEN_LOGICAL_XOR(RhsSelfAdjoint,RhsStorageOrder==RowMajor) ? ColMajor : RowMajor,
316
+ RhsSelfAdjoint, NumTraits<Scalar>::IsComplex && EIGEN_LOGICAL_XOR(RhsSelfAdjoint,ConjugateRhs),
317
+ EIGEN_LOGICAL_XOR(LhsSelfAdjoint,LhsStorageOrder==RowMajor) ? ColMajor : RowMajor,
318
+ LhsSelfAdjoint, NumTraits<Scalar>::IsComplex && EIGEN_LOGICAL_XOR(LhsSelfAdjoint,ConjugateLhs),
319
+ ColMajor,ResInnerStride>
320
+ ::run(cols, rows, rhs, rhsStride, lhs, lhsStride, res, resIncr, resStride, alpha, blocking);
321
+ }
322
+ };
323
+
324
+ template <typename Scalar, typename Index,
325
+ int LhsStorageOrder, bool ConjugateLhs,
326
+ int RhsStorageOrder, bool ConjugateRhs,
327
+ int ResInnerStride>
328
+ struct product_selfadjoint_matrix<Scalar,Index,LhsStorageOrder,true,ConjugateLhs, RhsStorageOrder,false,ConjugateRhs,ColMajor,ResInnerStride>
329
+ {
330
+
331
+ static EIGEN_DONT_INLINE void run(
332
+ Index rows, Index cols,
333
+ const Scalar* _lhs, Index lhsStride,
334
+ const Scalar* _rhs, Index rhsStride,
335
+ Scalar* res, Index resIncr, Index resStride,
336
+ const Scalar& alpha, level3_blocking<Scalar,Scalar>& blocking);
337
+ };
338
+
339
+ template <typename Scalar, typename Index,
340
+ int LhsStorageOrder, bool ConjugateLhs,
341
+ int RhsStorageOrder, bool ConjugateRhs,
342
+ int ResInnerStride>
343
+ EIGEN_DONT_INLINE void product_selfadjoint_matrix<Scalar,Index,LhsStorageOrder,true,ConjugateLhs, RhsStorageOrder,false,ConjugateRhs,ColMajor,ResInnerStride>::run(
344
+ Index rows, Index cols,
345
+ const Scalar* _lhs, Index lhsStride,
346
+ const Scalar* _rhs, Index rhsStride,
347
+ Scalar* _res, Index resIncr, Index resStride,
348
+ const Scalar& alpha, level3_blocking<Scalar,Scalar>& blocking)
349
+ {
350
+ Index size = rows;
351
+
352
+ typedef gebp_traits<Scalar,Scalar> Traits;
353
+
354
+ typedef const_blas_data_mapper<Scalar, Index, LhsStorageOrder> LhsMapper;
355
+ typedef const_blas_data_mapper<Scalar, Index, (LhsStorageOrder == RowMajor) ? ColMajor : RowMajor> LhsTransposeMapper;
356
+ typedef const_blas_data_mapper<Scalar, Index, RhsStorageOrder> RhsMapper;
357
+ typedef blas_data_mapper<typename Traits::ResScalar, Index, ColMajor, Unaligned, ResInnerStride> ResMapper;
358
+ LhsMapper lhs(_lhs,lhsStride);
359
+ LhsTransposeMapper lhs_transpose(_lhs,lhsStride);
360
+ RhsMapper rhs(_rhs,rhsStride);
361
+ ResMapper res(_res, resStride, resIncr);
362
+
363
+ Index kc = blocking.kc(); // cache block size along the K direction
364
+ Index mc = (std::min)(rows,blocking.mc()); // cache block size along the M direction
365
+ // kc must be smaller than mc
366
+ kc = (std::min)(kc,mc);
367
+ std::size_t sizeA = kc*mc;
368
+ std::size_t sizeB = kc*cols;
369
+ ei_declare_aligned_stack_constructed_variable(Scalar, blockA, sizeA, blocking.blockA());
370
+ ei_declare_aligned_stack_constructed_variable(Scalar, blockB, sizeB, blocking.blockB());
371
+
372
+ gebp_kernel<Scalar, Scalar, Index, ResMapper, Traits::mr, Traits::nr, ConjugateLhs, ConjugateRhs> gebp_kernel;
373
+ symm_pack_lhs<Scalar, Index, Traits::mr, Traits::LhsProgress, LhsStorageOrder> pack_lhs;
374
+ gemm_pack_rhs<Scalar, Index, RhsMapper, Traits::nr,RhsStorageOrder> pack_rhs;
375
+ gemm_pack_lhs<Scalar, Index, LhsTransposeMapper, Traits::mr, Traits::LhsProgress, typename Traits::LhsPacket4Packing, LhsStorageOrder==RowMajor?ColMajor:RowMajor, true> pack_lhs_transposed;
376
+
377
+ for(Index k2=0; k2<size; k2+=kc)
378
+ {
379
+ const Index actual_kc = (std::min)(k2+kc,size)-k2;
380
+
381
+ // we have selected one row panel of rhs and one column panel of lhs
382
+ // pack rhs's panel into a sequential chunk of memory
383
+ // and expand each coeff to a constant packet for further reuse
384
+ pack_rhs(blockB, rhs.getSubMapper(k2,0), actual_kc, cols);
385
+
386
+ // the select lhs's panel has to be split in three different parts:
387
+ // 1 - the transposed panel above the diagonal block => transposed packed copy
388
+ // 2 - the diagonal block => special packed copy
389
+ // 3 - the panel below the diagonal block => generic packed copy
390
+ for(Index i2=0; i2<k2; i2+=mc)
391
+ {
392
+ const Index actual_mc = (std::min)(i2+mc,k2)-i2;
393
+ // transposed packed copy
394
+ pack_lhs_transposed(blockA, lhs_transpose.getSubMapper(i2, k2), actual_kc, actual_mc);
395
+
396
+ gebp_kernel(res.getSubMapper(i2, 0), blockA, blockB, actual_mc, actual_kc, cols, alpha);
397
+ }
398
+ // the block diagonal
399
+ {
400
+ const Index actual_mc = (std::min)(k2+kc,size)-k2;
401
+ // symmetric packed copy
402
+ pack_lhs(blockA, &lhs(k2,k2), lhsStride, actual_kc, actual_mc);
403
+
404
+ gebp_kernel(res.getSubMapper(k2, 0), blockA, blockB, actual_mc, actual_kc, cols, alpha);
405
+ }
406
+
407
+ for(Index i2=k2+kc; i2<size; i2+=mc)
408
+ {
409
+ const Index actual_mc = (std::min)(i2+mc,size)-i2;
410
+ gemm_pack_lhs<Scalar, Index, LhsMapper, Traits::mr, Traits::LhsProgress, typename Traits::LhsPacket4Packing, LhsStorageOrder,false>()
411
+ (blockA, lhs.getSubMapper(i2, k2), actual_kc, actual_mc);
412
+
413
+ gebp_kernel(res.getSubMapper(i2, 0), blockA, blockB, actual_mc, actual_kc, cols, alpha);
414
+ }
415
+ }
416
+ }
417
+
418
+ // matrix * selfadjoint product
419
+ template <typename Scalar, typename Index,
420
+ int LhsStorageOrder, bool ConjugateLhs,
421
+ int RhsStorageOrder, bool ConjugateRhs,
422
+ int ResInnerStride>
423
+ struct product_selfadjoint_matrix<Scalar,Index,LhsStorageOrder,false,ConjugateLhs, RhsStorageOrder,true,ConjugateRhs,ColMajor,ResInnerStride>
424
+ {
425
+
426
+ static EIGEN_DONT_INLINE void run(
427
+ Index rows, Index cols,
428
+ const Scalar* _lhs, Index lhsStride,
429
+ const Scalar* _rhs, Index rhsStride,
430
+ Scalar* res, Index resIncr, Index resStride,
431
+ const Scalar& alpha, level3_blocking<Scalar,Scalar>& blocking);
432
+ };
433
+
434
+ template <typename Scalar, typename Index,
435
+ int LhsStorageOrder, bool ConjugateLhs,
436
+ int RhsStorageOrder, bool ConjugateRhs,
437
+ int ResInnerStride>
438
+ EIGEN_DONT_INLINE void product_selfadjoint_matrix<Scalar,Index,LhsStorageOrder,false,ConjugateLhs, RhsStorageOrder,true,ConjugateRhs,ColMajor,ResInnerStride>::run(
439
+ Index rows, Index cols,
440
+ const Scalar* _lhs, Index lhsStride,
441
+ const Scalar* _rhs, Index rhsStride,
442
+ Scalar* _res, Index resIncr, Index resStride,
443
+ const Scalar& alpha, level3_blocking<Scalar,Scalar>& blocking)
444
+ {
445
+ Index size = cols;
446
+
447
+ typedef gebp_traits<Scalar,Scalar> Traits;
448
+
449
+ typedef const_blas_data_mapper<Scalar, Index, LhsStorageOrder> LhsMapper;
450
+ typedef blas_data_mapper<typename Traits::ResScalar, Index, ColMajor, Unaligned, ResInnerStride> ResMapper;
451
+ LhsMapper lhs(_lhs,lhsStride);
452
+ ResMapper res(_res,resStride, resIncr);
453
+
454
+ Index kc = blocking.kc(); // cache block size along the K direction
455
+ Index mc = (std::min)(rows,blocking.mc()); // cache block size along the M direction
456
+ std::size_t sizeA = kc*mc;
457
+ std::size_t sizeB = kc*cols;
458
+ ei_declare_aligned_stack_constructed_variable(Scalar, blockA, sizeA, blocking.blockA());
459
+ ei_declare_aligned_stack_constructed_variable(Scalar, blockB, sizeB, blocking.blockB());
460
+
461
+ gebp_kernel<Scalar, Scalar, Index, ResMapper, Traits::mr, Traits::nr, ConjugateLhs, ConjugateRhs> gebp_kernel;
462
+ gemm_pack_lhs<Scalar, Index, LhsMapper, Traits::mr, Traits::LhsProgress, typename Traits::LhsPacket4Packing, LhsStorageOrder> pack_lhs;
463
+ symm_pack_rhs<Scalar, Index, Traits::nr,RhsStorageOrder> pack_rhs;
464
+
465
+ for(Index k2=0; k2<size; k2+=kc)
466
+ {
467
+ const Index actual_kc = (std::min)(k2+kc,size)-k2;
468
+
469
+ pack_rhs(blockB, _rhs, rhsStride, actual_kc, cols, k2);
470
+
471
+ // => GEPP
472
+ for(Index i2=0; i2<rows; i2+=mc)
473
+ {
474
+ const Index actual_mc = (std::min)(i2+mc,rows)-i2;
475
+ pack_lhs(blockA, lhs.getSubMapper(i2, k2), actual_kc, actual_mc);
476
+
477
+ gebp_kernel(res.getSubMapper(i2, 0), blockA, blockB, actual_mc, actual_kc, cols, alpha);
478
+ }
479
+ }
480
+ }
481
+
482
+ } // end namespace internal
483
+
484
+ /***************************************************************************
485
+ * Wrapper to product_selfadjoint_matrix
486
+ ***************************************************************************/
487
+
488
+ namespace internal {
489
+
490
+ template<typename Lhs, int LhsMode, typename Rhs, int RhsMode>
491
+ struct selfadjoint_product_impl<Lhs,LhsMode,false,Rhs,RhsMode,false>
492
+ {
493
+ typedef typename Product<Lhs,Rhs>::Scalar Scalar;
494
+
495
+ typedef internal::blas_traits<Lhs> LhsBlasTraits;
496
+ typedef typename LhsBlasTraits::DirectLinearAccessType ActualLhsType;
497
+ typedef internal::blas_traits<Rhs> RhsBlasTraits;
498
+ typedef typename RhsBlasTraits::DirectLinearAccessType ActualRhsType;
499
+
500
+ enum {
501
+ LhsIsUpper = (LhsMode&(Upper|Lower))==Upper,
502
+ LhsIsSelfAdjoint = (LhsMode&SelfAdjoint)==SelfAdjoint,
503
+ RhsIsUpper = (RhsMode&(Upper|Lower))==Upper,
504
+ RhsIsSelfAdjoint = (RhsMode&SelfAdjoint)==SelfAdjoint
505
+ };
506
+
507
+ template<typename Dest>
508
+ static void run(Dest &dst, const Lhs &a_lhs, const Rhs &a_rhs, const Scalar& alpha)
509
+ {
510
+ eigen_assert(dst.rows()==a_lhs.rows() && dst.cols()==a_rhs.cols());
511
+
512
+ typename internal::add_const_on_value_type<ActualLhsType>::type lhs = LhsBlasTraits::extract(a_lhs);
513
+ typename internal::add_const_on_value_type<ActualRhsType>::type rhs = RhsBlasTraits::extract(a_rhs);
514
+
515
+ Scalar actualAlpha = alpha * LhsBlasTraits::extractScalarFactor(a_lhs)
516
+ * RhsBlasTraits::extractScalarFactor(a_rhs);
517
+
518
+ typedef internal::gemm_blocking_space<(Dest::Flags&RowMajorBit) ? RowMajor : ColMajor,Scalar,Scalar,
519
+ Lhs::MaxRowsAtCompileTime, Rhs::MaxColsAtCompileTime, Lhs::MaxColsAtCompileTime,1> BlockingType;
520
+
521
+ BlockingType blocking(lhs.rows(), rhs.cols(), lhs.cols(), 1, false);
522
+
523
+ internal::product_selfadjoint_matrix<Scalar, Index,
524
+ EIGEN_LOGICAL_XOR(LhsIsUpper,internal::traits<Lhs>::Flags &RowMajorBit) ? RowMajor : ColMajor, LhsIsSelfAdjoint,
525
+ NumTraits<Scalar>::IsComplex && EIGEN_LOGICAL_XOR(LhsIsUpper,bool(LhsBlasTraits::NeedToConjugate)),
526
+ EIGEN_LOGICAL_XOR(RhsIsUpper,internal::traits<Rhs>::Flags &RowMajorBit) ? RowMajor : ColMajor, RhsIsSelfAdjoint,
527
+ NumTraits<Scalar>::IsComplex && EIGEN_LOGICAL_XOR(RhsIsUpper,bool(RhsBlasTraits::NeedToConjugate)),
528
+ internal::traits<Dest>::Flags&RowMajorBit ? RowMajor : ColMajor,
529
+ Dest::InnerStrideAtCompileTime>
530
+ ::run(
531
+ lhs.rows(), rhs.cols(), // sizes
532
+ &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info
533
+ &rhs.coeffRef(0,0), rhs.outerStride(), // rhs info
534
+ &dst.coeffRef(0,0), dst.innerStride(), dst.outerStride(), // result info
535
+ actualAlpha, blocking // alpha
536
+ );
537
+ }
538
+ };
539
+
540
+ } // end namespace internal
541
+
542
+ } // end namespace Eigen
543
+
544
+ #endif // EIGEN_SELFADJOINT_MATRIX_MATRIX_H