umappp 0.1.2

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Files changed (395) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +25 -0
  3. data/README.md +110 -0
  4. data/ext/umappp/extconf.rb +25 -0
  5. data/ext/umappp/numo.hpp +867 -0
  6. data/ext/umappp/umappp.cpp +225 -0
  7. data/lib/umappp/version.rb +5 -0
  8. data/lib/umappp.rb +41 -0
  9. data/vendor/Eigen/Cholesky +45 -0
  10. data/vendor/Eigen/CholmodSupport +48 -0
  11. data/vendor/Eigen/Core +384 -0
  12. data/vendor/Eigen/Dense +7 -0
  13. data/vendor/Eigen/Eigen +2 -0
  14. data/vendor/Eigen/Eigenvalues +60 -0
  15. data/vendor/Eigen/Geometry +59 -0
  16. data/vendor/Eigen/Householder +29 -0
  17. data/vendor/Eigen/IterativeLinearSolvers +48 -0
  18. data/vendor/Eigen/Jacobi +32 -0
  19. data/vendor/Eigen/KLUSupport +41 -0
  20. data/vendor/Eigen/LU +47 -0
  21. data/vendor/Eigen/MetisSupport +35 -0
  22. data/vendor/Eigen/OrderingMethods +70 -0
  23. data/vendor/Eigen/PaStiXSupport +49 -0
  24. data/vendor/Eigen/PardisoSupport +35 -0
  25. data/vendor/Eigen/QR +50 -0
  26. data/vendor/Eigen/QtAlignedMalloc +39 -0
  27. data/vendor/Eigen/SPQRSupport +34 -0
  28. data/vendor/Eigen/SVD +50 -0
  29. data/vendor/Eigen/Sparse +34 -0
  30. data/vendor/Eigen/SparseCholesky +37 -0
  31. data/vendor/Eigen/SparseCore +69 -0
  32. data/vendor/Eigen/SparseLU +50 -0
  33. data/vendor/Eigen/SparseQR +36 -0
  34. data/vendor/Eigen/StdDeque +27 -0
  35. data/vendor/Eigen/StdList +26 -0
  36. data/vendor/Eigen/StdVector +27 -0
  37. data/vendor/Eigen/SuperLUSupport +64 -0
  38. data/vendor/Eigen/UmfPackSupport +40 -0
  39. data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
  40. data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
  41. data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  42. data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
  43. data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
  44. data/vendor/Eigen/src/Core/Array.h +417 -0
  45. data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
  46. data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
  47. data/vendor/Eigen/src/Core/Assign.h +90 -0
  48. data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
  49. data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
  50. data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
  51. data/vendor/Eigen/src/Core/Block.h +448 -0
  52. data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
  53. data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
  54. data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
  55. data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
  56. data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
  57. data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
  58. data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
  59. data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  60. data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  61. data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
  62. data/vendor/Eigen/src/Core/DenseBase.h +701 -0
  63. data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
  64. data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
  65. data/vendor/Eigen/src/Core/Diagonal.h +258 -0
  66. data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
  67. data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
  68. data/vendor/Eigen/src/Core/Dot.h +318 -0
  69. data/vendor/Eigen/src/Core/EigenBase.h +160 -0
  70. data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
  71. data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
  72. data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
  73. data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
  74. data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
  75. data/vendor/Eigen/src/Core/IO.h +258 -0
  76. data/vendor/Eigen/src/Core/IndexedView.h +237 -0
  77. data/vendor/Eigen/src/Core/Inverse.h +117 -0
  78. data/vendor/Eigen/src/Core/Map.h +171 -0
  79. data/vendor/Eigen/src/Core/MapBase.h +310 -0
  80. data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
  81. data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
  82. data/vendor/Eigen/src/Core/Matrix.h +565 -0
  83. data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
  84. data/vendor/Eigen/src/Core/NestByValue.h +85 -0
  85. data/vendor/Eigen/src/Core/NoAlias.h +109 -0
  86. data/vendor/Eigen/src/Core/NumTraits.h +335 -0
  87. data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  88. data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
  89. data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
  90. data/vendor/Eigen/src/Core/Product.h +191 -0
  91. data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
  92. data/vendor/Eigen/src/Core/Random.h +218 -0
  93. data/vendor/Eigen/src/Core/Redux.h +515 -0
  94. data/vendor/Eigen/src/Core/Ref.h +381 -0
  95. data/vendor/Eigen/src/Core/Replicate.h +142 -0
  96. data/vendor/Eigen/src/Core/Reshaped.h +454 -0
  97. data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
  98. data/vendor/Eigen/src/Core/Reverse.h +217 -0
  99. data/vendor/Eigen/src/Core/Select.h +164 -0
  100. data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
  101. data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  102. data/vendor/Eigen/src/Core/Solve.h +188 -0
  103. data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
  104. data/vendor/Eigen/src/Core/SolverBase.h +168 -0
  105. data/vendor/Eigen/src/Core/StableNorm.h +251 -0
  106. data/vendor/Eigen/src/Core/StlIterators.h +463 -0
  107. data/vendor/Eigen/src/Core/Stride.h +116 -0
  108. data/vendor/Eigen/src/Core/Swap.h +68 -0
  109. data/vendor/Eigen/src/Core/Transpose.h +464 -0
  110. data/vendor/Eigen/src/Core/Transpositions.h +386 -0
  111. data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
  112. data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
  113. data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
  114. data/vendor/Eigen/src/Core/Visitor.h +381 -0
  115. data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
  116. data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
  117. data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
  118. data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
  119. data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  120. data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
  121. data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
  122. data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  123. data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
  124. data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
  125. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  126. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  127. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  128. data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
  129. data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
  130. data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  131. data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
  132. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  133. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  134. data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
  135. data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
  136. data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  137. data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
  138. data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  139. data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  140. data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  141. data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  142. data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  143. data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  144. data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
  145. data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  146. data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
  147. data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
  148. data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  149. data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
  150. data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
  151. data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
  152. data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
  153. data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  154. data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  155. data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  156. data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  157. data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  158. data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  159. data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  160. data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  161. data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
  162. data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
  163. data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
  164. data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
  165. data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
  166. data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
  167. data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
  168. data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  169. data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
  170. data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
  171. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
  172. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
  173. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  174. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
  175. data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
  176. data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  177. data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
  178. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
  179. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
  180. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
  181. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  182. data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  183. data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
  184. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
  185. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
  186. data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  187. data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  188. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
  189. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
  190. data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
  191. data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
  192. data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  193. data/vendor/Eigen/src/Core/util/Constants.h +563 -0
  194. data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
  195. data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
  196. data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  197. data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
  198. data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
  199. data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
  200. data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
  201. data/vendor/Eigen/src/Core/util/Meta.h +812 -0
  202. data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
  203. data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
  204. data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  205. data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
  206. data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  207. data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
  208. data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  209. data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
  210. data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  211. data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  212. data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  213. data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  214. data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  215. data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  216. data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
  217. data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
  218. data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  219. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
  220. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  221. data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
  222. data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
  223. data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
  224. data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
  225. data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
  226. data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
  227. data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
  228. data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
  229. data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
  230. data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
  231. data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
  232. data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
  233. data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
  234. data/vendor/Eigen/src/Geometry/Translation.h +202 -0
  235. data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
  236. data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  237. data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
  238. data/vendor/Eigen/src/Householder/Householder.h +176 -0
  239. data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
  240. data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  241. data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
  242. data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
  243. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
  244. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
  245. data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
  246. data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
  247. data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
  248. data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
  249. data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  250. data/vendor/Eigen/src/LU/Determinant.h +117 -0
  251. data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
  252. data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
  253. data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
  254. data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  255. data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
  256. data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  257. data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
  258. data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
  259. data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
  260. data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  261. data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
  262. data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
  263. data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  264. data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
  265. data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
  266. data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
  267. data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  268. data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
  269. data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
  270. data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
  271. data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  272. data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
  273. data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  274. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
  275. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
  276. data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
  277. data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
  278. data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  279. data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  280. data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
  281. data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
  282. data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  283. data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
  284. data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
  285. data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
  286. data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
  287. data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  288. data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
  289. data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  290. data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
  291. data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
  292. data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
  293. data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  294. data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
  295. data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
  296. data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
  297. data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
  298. data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  299. data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  300. data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  301. data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  302. data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
  303. data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
  304. data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
  305. data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  306. data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
  307. data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  308. data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  309. data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  310. data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
  311. data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  312. data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  313. data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  314. data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  315. data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  316. data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  317. data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  318. data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  319. data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  320. data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  321. data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  322. data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  323. data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
  324. data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
  325. data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
  326. data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
  327. data/vendor/Eigen/src/StlSupport/details.h +84 -0
  328. data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
  329. data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
  330. data/vendor/Eigen/src/misc/Image.h +82 -0
  331. data/vendor/Eigen/src/misc/Kernel.h +79 -0
  332. data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
  333. data/vendor/Eigen/src/misc/blas.h +440 -0
  334. data/vendor/Eigen/src/misc/lapack.h +152 -0
  335. data/vendor/Eigen/src/misc/lapacke.h +16292 -0
  336. data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
  337. data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
  338. data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
  339. data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
  340. data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  341. data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
  342. data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  343. data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  344. data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
  345. data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
  346. data/vendor/aarand/aarand.hpp +114 -0
  347. data/vendor/annoy/annoylib.h +1495 -0
  348. data/vendor/annoy/kissrandom.h +120 -0
  349. data/vendor/annoy/mman.h +242 -0
  350. data/vendor/hnswlib/bruteforce.h +152 -0
  351. data/vendor/hnswlib/hnswalg.h +1192 -0
  352. data/vendor/hnswlib/hnswlib.h +108 -0
  353. data/vendor/hnswlib/space_ip.h +282 -0
  354. data/vendor/hnswlib/space_l2.h +281 -0
  355. data/vendor/hnswlib/visited_list_pool.h +79 -0
  356. data/vendor/irlba/irlba.hpp +575 -0
  357. data/vendor/irlba/lanczos.hpp +212 -0
  358. data/vendor/irlba/parallel.hpp +474 -0
  359. data/vendor/irlba/utils.hpp +224 -0
  360. data/vendor/irlba/wrappers.hpp +228 -0
  361. data/vendor/kmeans/Base.hpp +75 -0
  362. data/vendor/kmeans/Details.hpp +79 -0
  363. data/vendor/kmeans/HartiganWong.hpp +492 -0
  364. data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
  365. data/vendor/kmeans/InitializeNone.hpp +44 -0
  366. data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
  367. data/vendor/kmeans/InitializeRandom.hpp +91 -0
  368. data/vendor/kmeans/Kmeans.hpp +161 -0
  369. data/vendor/kmeans/Lloyd.hpp +134 -0
  370. data/vendor/kmeans/MiniBatch.hpp +269 -0
  371. data/vendor/kmeans/QuickSearch.hpp +179 -0
  372. data/vendor/kmeans/compute_centroids.hpp +32 -0
  373. data/vendor/kmeans/compute_wcss.hpp +27 -0
  374. data/vendor/kmeans/is_edge_case.hpp +42 -0
  375. data/vendor/kmeans/random.hpp +55 -0
  376. data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
  377. data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
  378. data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
  379. data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
  380. data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
  381. data/vendor/knncolle/knncolle.hpp +34 -0
  382. data/vendor/knncolle/utils/Base.hpp +100 -0
  383. data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
  384. data/vendor/knncolle/utils/distances.hpp +98 -0
  385. data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
  386. data/vendor/powerit/PowerIterations.hpp +157 -0
  387. data/vendor/umappp/NeighborList.hpp +37 -0
  388. data/vendor/umappp/Umap.hpp +662 -0
  389. data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
  390. data/vendor/umappp/find_ab.hpp +157 -0
  391. data/vendor/umappp/neighbor_similarities.hpp +136 -0
  392. data/vendor/umappp/optimize_layout.hpp +285 -0
  393. data/vendor/umappp/spectral_init.hpp +181 -0
  394. data/vendor/umappp/umappp.hpp +13 -0
  395. metadata +465 -0
@@ -0,0 +1,155 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2006-2008 Benoit Jacob <jacob.benoit.1@gmail.com>
5
+ // Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_FUZZY_H
12
+ #define EIGEN_FUZZY_H
13
+
14
+ namespace Eigen {
15
+
16
+ namespace internal
17
+ {
18
+
19
+ template<typename Derived, typename OtherDerived, bool is_integer = NumTraits<typename Derived::Scalar>::IsInteger>
20
+ struct isApprox_selector
21
+ {
22
+ EIGEN_DEVICE_FUNC
23
+ static bool run(const Derived& x, const OtherDerived& y, const typename Derived::RealScalar& prec)
24
+ {
25
+ typename internal::nested_eval<Derived,2>::type nested(x);
26
+ typename internal::nested_eval<OtherDerived,2>::type otherNested(y);
27
+ return (nested - otherNested).cwiseAbs2().sum() <= prec * prec * numext::mini(nested.cwiseAbs2().sum(), otherNested.cwiseAbs2().sum());
28
+ }
29
+ };
30
+
31
+ template<typename Derived, typename OtherDerived>
32
+ struct isApprox_selector<Derived, OtherDerived, true>
33
+ {
34
+ EIGEN_DEVICE_FUNC
35
+ static bool run(const Derived& x, const OtherDerived& y, const typename Derived::RealScalar&)
36
+ {
37
+ return x.matrix() == y.matrix();
38
+ }
39
+ };
40
+
41
+ template<typename Derived, typename OtherDerived, bool is_integer = NumTraits<typename Derived::Scalar>::IsInteger>
42
+ struct isMuchSmallerThan_object_selector
43
+ {
44
+ EIGEN_DEVICE_FUNC
45
+ static bool run(const Derived& x, const OtherDerived& y, const typename Derived::RealScalar& prec)
46
+ {
47
+ return x.cwiseAbs2().sum() <= numext::abs2(prec) * y.cwiseAbs2().sum();
48
+ }
49
+ };
50
+
51
+ template<typename Derived, typename OtherDerived>
52
+ struct isMuchSmallerThan_object_selector<Derived, OtherDerived, true>
53
+ {
54
+ EIGEN_DEVICE_FUNC
55
+ static bool run(const Derived& x, const OtherDerived&, const typename Derived::RealScalar&)
56
+ {
57
+ return x.matrix() == Derived::Zero(x.rows(), x.cols()).matrix();
58
+ }
59
+ };
60
+
61
+ template<typename Derived, bool is_integer = NumTraits<typename Derived::Scalar>::IsInteger>
62
+ struct isMuchSmallerThan_scalar_selector
63
+ {
64
+ EIGEN_DEVICE_FUNC
65
+ static bool run(const Derived& x, const typename Derived::RealScalar& y, const typename Derived::RealScalar& prec)
66
+ {
67
+ return x.cwiseAbs2().sum() <= numext::abs2(prec * y);
68
+ }
69
+ };
70
+
71
+ template<typename Derived>
72
+ struct isMuchSmallerThan_scalar_selector<Derived, true>
73
+ {
74
+ EIGEN_DEVICE_FUNC
75
+ static bool run(const Derived& x, const typename Derived::RealScalar&, const typename Derived::RealScalar&)
76
+ {
77
+ return x.matrix() == Derived::Zero(x.rows(), x.cols()).matrix();
78
+ }
79
+ };
80
+
81
+ } // end namespace internal
82
+
83
+
84
+ /** \returns \c true if \c *this is approximately equal to \a other, within the precision
85
+ * determined by \a prec.
86
+ *
87
+ * \note The fuzzy compares are done multiplicatively. Two vectors \f$ v \f$ and \f$ w \f$
88
+ * are considered to be approximately equal within precision \f$ p \f$ if
89
+ * \f[ \Vert v - w \Vert \leqslant p\,\min(\Vert v\Vert, \Vert w\Vert). \f]
90
+ * For matrices, the comparison is done using the Hilbert-Schmidt norm (aka Frobenius norm
91
+ * L2 norm).
92
+ *
93
+ * \note Because of the multiplicativeness of this comparison, one can't use this function
94
+ * to check whether \c *this is approximately equal to the zero matrix or vector.
95
+ * Indeed, \c isApprox(zero) returns false unless \c *this itself is exactly the zero matrix
96
+ * or vector. If you want to test whether \c *this is zero, use internal::isMuchSmallerThan(const
97
+ * RealScalar&, RealScalar) instead.
98
+ *
99
+ * \sa internal::isMuchSmallerThan(const RealScalar&, RealScalar) const
100
+ */
101
+ template<typename Derived>
102
+ template<typename OtherDerived>
103
+ EIGEN_DEVICE_FUNC bool DenseBase<Derived>::isApprox(
104
+ const DenseBase<OtherDerived>& other,
105
+ const RealScalar& prec
106
+ ) const
107
+ {
108
+ return internal::isApprox_selector<Derived, OtherDerived>::run(derived(), other.derived(), prec);
109
+ }
110
+
111
+ /** \returns \c true if the norm of \c *this is much smaller than \a other,
112
+ * within the precision determined by \a prec.
113
+ *
114
+ * \note The fuzzy compares are done multiplicatively. A vector \f$ v \f$ is
115
+ * considered to be much smaller than \f$ x \f$ within precision \f$ p \f$ if
116
+ * \f[ \Vert v \Vert \leqslant p\,\vert x\vert. \f]
117
+ *
118
+ * For matrices, the comparison is done using the Hilbert-Schmidt norm. For this reason,
119
+ * the value of the reference scalar \a other should come from the Hilbert-Schmidt norm
120
+ * of a reference matrix of same dimensions.
121
+ *
122
+ * \sa isApprox(), isMuchSmallerThan(const DenseBase<OtherDerived>&, RealScalar) const
123
+ */
124
+ template<typename Derived>
125
+ EIGEN_DEVICE_FUNC bool DenseBase<Derived>::isMuchSmallerThan(
126
+ const typename NumTraits<Scalar>::Real& other,
127
+ const RealScalar& prec
128
+ ) const
129
+ {
130
+ return internal::isMuchSmallerThan_scalar_selector<Derived>::run(derived(), other, prec);
131
+ }
132
+
133
+ /** \returns \c true if the norm of \c *this is much smaller than the norm of \a other,
134
+ * within the precision determined by \a prec.
135
+ *
136
+ * \note The fuzzy compares are done multiplicatively. A vector \f$ v \f$ is
137
+ * considered to be much smaller than a vector \f$ w \f$ within precision \f$ p \f$ if
138
+ * \f[ \Vert v \Vert \leqslant p\,\Vert w\Vert. \f]
139
+ * For matrices, the comparison is done using the Hilbert-Schmidt norm.
140
+ *
141
+ * \sa isApprox(), isMuchSmallerThan(const RealScalar&, RealScalar) const
142
+ */
143
+ template<typename Derived>
144
+ template<typename OtherDerived>
145
+ EIGEN_DEVICE_FUNC bool DenseBase<Derived>::isMuchSmallerThan(
146
+ const DenseBase<OtherDerived>& other,
147
+ const RealScalar& prec
148
+ ) const
149
+ {
150
+ return internal::isMuchSmallerThan_object_selector<Derived, OtherDerived>::run(derived(), other.derived(), prec);
151
+ }
152
+
153
+ } // end namespace Eigen
154
+
155
+ #endif // EIGEN_FUZZY_H
@@ -0,0 +1,465 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2006-2008 Benoit Jacob <jacob.benoit.1@gmail.com>
5
+ // Copyright (C) 2008-2011 Gael Guennebaud <gael.guennebaud@inria.fr>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_GENERAL_PRODUCT_H
12
+ #define EIGEN_GENERAL_PRODUCT_H
13
+
14
+ namespace Eigen {
15
+
16
+ enum {
17
+ Large = 2,
18
+ Small = 3
19
+ };
20
+
21
+ // Define the threshold value to fallback from the generic matrix-matrix product
22
+ // implementation (heavy) to the lightweight coeff-based product one.
23
+ // See generic_product_impl<Lhs,Rhs,DenseShape,DenseShape,GemmProduct>
24
+ // in products/GeneralMatrixMatrix.h for more details.
25
+ // TODO This threshold should also be used in the compile-time selector below.
26
+ #ifndef EIGEN_GEMM_TO_COEFFBASED_THRESHOLD
27
+ // This default value has been obtained on a Haswell architecture.
28
+ #define EIGEN_GEMM_TO_COEFFBASED_THRESHOLD 20
29
+ #endif
30
+
31
+ namespace internal {
32
+
33
+ template<int Rows, int Cols, int Depth> struct product_type_selector;
34
+
35
+ template<int Size, int MaxSize> struct product_size_category
36
+ {
37
+ enum {
38
+ #ifndef EIGEN_GPU_COMPILE_PHASE
39
+ is_large = MaxSize == Dynamic ||
40
+ Size >= EIGEN_CACHEFRIENDLY_PRODUCT_THRESHOLD ||
41
+ (Size==Dynamic && MaxSize>=EIGEN_CACHEFRIENDLY_PRODUCT_THRESHOLD),
42
+ #else
43
+ is_large = 0,
44
+ #endif
45
+ value = is_large ? Large
46
+ : Size == 1 ? 1
47
+ : Small
48
+ };
49
+ };
50
+
51
+ template<typename Lhs, typename Rhs> struct product_type
52
+ {
53
+ typedef typename remove_all<Lhs>::type _Lhs;
54
+ typedef typename remove_all<Rhs>::type _Rhs;
55
+ enum {
56
+ MaxRows = traits<_Lhs>::MaxRowsAtCompileTime,
57
+ Rows = traits<_Lhs>::RowsAtCompileTime,
58
+ MaxCols = traits<_Rhs>::MaxColsAtCompileTime,
59
+ Cols = traits<_Rhs>::ColsAtCompileTime,
60
+ MaxDepth = EIGEN_SIZE_MIN_PREFER_FIXED(traits<_Lhs>::MaxColsAtCompileTime,
61
+ traits<_Rhs>::MaxRowsAtCompileTime),
62
+ Depth = EIGEN_SIZE_MIN_PREFER_FIXED(traits<_Lhs>::ColsAtCompileTime,
63
+ traits<_Rhs>::RowsAtCompileTime)
64
+ };
65
+
66
+ // the splitting into different lines of code here, introducing the _select enums and the typedef below,
67
+ // is to work around an internal compiler error with gcc 4.1 and 4.2.
68
+ private:
69
+ enum {
70
+ rows_select = product_size_category<Rows,MaxRows>::value,
71
+ cols_select = product_size_category<Cols,MaxCols>::value,
72
+ depth_select = product_size_category<Depth,MaxDepth>::value
73
+ };
74
+ typedef product_type_selector<rows_select, cols_select, depth_select> selector;
75
+
76
+ public:
77
+ enum {
78
+ value = selector::ret,
79
+ ret = selector::ret
80
+ };
81
+ #ifdef EIGEN_DEBUG_PRODUCT
82
+ static void debug()
83
+ {
84
+ EIGEN_DEBUG_VAR(Rows);
85
+ EIGEN_DEBUG_VAR(Cols);
86
+ EIGEN_DEBUG_VAR(Depth);
87
+ EIGEN_DEBUG_VAR(rows_select);
88
+ EIGEN_DEBUG_VAR(cols_select);
89
+ EIGEN_DEBUG_VAR(depth_select);
90
+ EIGEN_DEBUG_VAR(value);
91
+ }
92
+ #endif
93
+ };
94
+
95
+ /* The following allows to select the kind of product at compile time
96
+ * based on the three dimensions of the product.
97
+ * This is a compile time mapping from {1,Small,Large}^3 -> {product types} */
98
+ // FIXME I'm not sure the current mapping is the ideal one.
99
+ template<int M, int N> struct product_type_selector<M,N,1> { enum { ret = OuterProduct }; };
100
+ template<int M> struct product_type_selector<M, 1, 1> { enum { ret = LazyCoeffBasedProductMode }; };
101
+ template<int N> struct product_type_selector<1, N, 1> { enum { ret = LazyCoeffBasedProductMode }; };
102
+ template<int Depth> struct product_type_selector<1, 1, Depth> { enum { ret = InnerProduct }; };
103
+ template<> struct product_type_selector<1, 1, 1> { enum { ret = InnerProduct }; };
104
+ template<> struct product_type_selector<Small,1, Small> { enum { ret = CoeffBasedProductMode }; };
105
+ template<> struct product_type_selector<1, Small,Small> { enum { ret = CoeffBasedProductMode }; };
106
+ template<> struct product_type_selector<Small,Small,Small> { enum { ret = CoeffBasedProductMode }; };
107
+ template<> struct product_type_selector<Small, Small, 1> { enum { ret = LazyCoeffBasedProductMode }; };
108
+ template<> struct product_type_selector<Small, Large, 1> { enum { ret = LazyCoeffBasedProductMode }; };
109
+ template<> struct product_type_selector<Large, Small, 1> { enum { ret = LazyCoeffBasedProductMode }; };
110
+ template<> struct product_type_selector<1, Large,Small> { enum { ret = CoeffBasedProductMode }; };
111
+ template<> struct product_type_selector<1, Large,Large> { enum { ret = GemvProduct }; };
112
+ template<> struct product_type_selector<1, Small,Large> { enum { ret = CoeffBasedProductMode }; };
113
+ template<> struct product_type_selector<Large,1, Small> { enum { ret = CoeffBasedProductMode }; };
114
+ template<> struct product_type_selector<Large,1, Large> { enum { ret = GemvProduct }; };
115
+ template<> struct product_type_selector<Small,1, Large> { enum { ret = CoeffBasedProductMode }; };
116
+ template<> struct product_type_selector<Small,Small,Large> { enum { ret = GemmProduct }; };
117
+ template<> struct product_type_selector<Large,Small,Large> { enum { ret = GemmProduct }; };
118
+ template<> struct product_type_selector<Small,Large,Large> { enum { ret = GemmProduct }; };
119
+ template<> struct product_type_selector<Large,Large,Large> { enum { ret = GemmProduct }; };
120
+ template<> struct product_type_selector<Large,Small,Small> { enum { ret = CoeffBasedProductMode }; };
121
+ template<> struct product_type_selector<Small,Large,Small> { enum { ret = CoeffBasedProductMode }; };
122
+ template<> struct product_type_selector<Large,Large,Small> { enum { ret = GemmProduct }; };
123
+
124
+ } // end namespace internal
125
+
126
+ /***********************************************************************
127
+ * Implementation of Inner Vector Vector Product
128
+ ***********************************************************************/
129
+
130
+ // FIXME : maybe the "inner product" could return a Scalar
131
+ // instead of a 1x1 matrix ??
132
+ // Pro: more natural for the user
133
+ // Cons: this could be a problem if in a meta unrolled algorithm a matrix-matrix
134
+ // product ends up to a row-vector times col-vector product... To tackle this use
135
+ // case, we could have a specialization for Block<MatrixType,1,1> with: operator=(Scalar x);
136
+
137
+ /***********************************************************************
138
+ * Implementation of Outer Vector Vector Product
139
+ ***********************************************************************/
140
+
141
+ /***********************************************************************
142
+ * Implementation of General Matrix Vector Product
143
+ ***********************************************************************/
144
+
145
+ /* According to the shape/flags of the matrix we have to distinghish 3 different cases:
146
+ * 1 - the matrix is col-major, BLAS compatible and M is large => call fast BLAS-like colmajor routine
147
+ * 2 - the matrix is row-major, BLAS compatible and N is large => call fast BLAS-like rowmajor routine
148
+ * 3 - all other cases are handled using a simple loop along the outer-storage direction.
149
+ * Therefore we need a lower level meta selector.
150
+ * Furthermore, if the matrix is the rhs, then the product has to be transposed.
151
+ */
152
+ namespace internal {
153
+
154
+ template<int Side, int StorageOrder, bool BlasCompatible>
155
+ struct gemv_dense_selector;
156
+
157
+ } // end namespace internal
158
+
159
+ namespace internal {
160
+
161
+ template<typename Scalar,int Size,int MaxSize,bool Cond> struct gemv_static_vector_if;
162
+
163
+ template<typename Scalar,int Size,int MaxSize>
164
+ struct gemv_static_vector_if<Scalar,Size,MaxSize,false>
165
+ {
166
+ EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Scalar* data() { eigen_internal_assert(false && "should never be called"); return 0; }
167
+ };
168
+
169
+ template<typename Scalar,int Size>
170
+ struct gemv_static_vector_if<Scalar,Size,Dynamic,true>
171
+ {
172
+ EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC Scalar* data() { return 0; }
173
+ };
174
+
175
+ template<typename Scalar,int Size,int MaxSize>
176
+ struct gemv_static_vector_if<Scalar,Size,MaxSize,true>
177
+ {
178
+ enum {
179
+ ForceAlignment = internal::packet_traits<Scalar>::Vectorizable,
180
+ PacketSize = internal::packet_traits<Scalar>::size
181
+ };
182
+ #if EIGEN_MAX_STATIC_ALIGN_BYTES!=0
183
+ internal::plain_array<Scalar,EIGEN_SIZE_MIN_PREFER_FIXED(Size,MaxSize),0,EIGEN_PLAIN_ENUM_MIN(AlignedMax,PacketSize)> m_data;
184
+ EIGEN_STRONG_INLINE Scalar* data() { return m_data.array; }
185
+ #else
186
+ // Some architectures cannot align on the stack,
187
+ // => let's manually enforce alignment by allocating more data and return the address of the first aligned element.
188
+ internal::plain_array<Scalar,EIGEN_SIZE_MIN_PREFER_FIXED(Size,MaxSize)+(ForceAlignment?EIGEN_MAX_ALIGN_BYTES:0),0> m_data;
189
+ EIGEN_STRONG_INLINE Scalar* data() {
190
+ return ForceAlignment
191
+ ? reinterpret_cast<Scalar*>((internal::UIntPtr(m_data.array) & ~(std::size_t(EIGEN_MAX_ALIGN_BYTES-1))) + EIGEN_MAX_ALIGN_BYTES)
192
+ : m_data.array;
193
+ }
194
+ #endif
195
+ };
196
+
197
+ // The vector is on the left => transposition
198
+ template<int StorageOrder, bool BlasCompatible>
199
+ struct gemv_dense_selector<OnTheLeft,StorageOrder,BlasCompatible>
200
+ {
201
+ template<typename Lhs, typename Rhs, typename Dest>
202
+ static void run(const Lhs &lhs, const Rhs &rhs, Dest& dest, const typename Dest::Scalar& alpha)
203
+ {
204
+ Transpose<Dest> destT(dest);
205
+ enum { OtherStorageOrder = StorageOrder == RowMajor ? ColMajor : RowMajor };
206
+ gemv_dense_selector<OnTheRight,OtherStorageOrder,BlasCompatible>
207
+ ::run(rhs.transpose(), lhs.transpose(), destT, alpha);
208
+ }
209
+ };
210
+
211
+ template<> struct gemv_dense_selector<OnTheRight,ColMajor,true>
212
+ {
213
+ template<typename Lhs, typename Rhs, typename Dest>
214
+ static inline void run(const Lhs &lhs, const Rhs &rhs, Dest& dest, const typename Dest::Scalar& alpha)
215
+ {
216
+ typedef typename Lhs::Scalar LhsScalar;
217
+ typedef typename Rhs::Scalar RhsScalar;
218
+ typedef typename Dest::Scalar ResScalar;
219
+ typedef typename Dest::RealScalar RealScalar;
220
+
221
+ typedef internal::blas_traits<Lhs> LhsBlasTraits;
222
+ typedef typename LhsBlasTraits::DirectLinearAccessType ActualLhsType;
223
+ typedef internal::blas_traits<Rhs> RhsBlasTraits;
224
+ typedef typename RhsBlasTraits::DirectLinearAccessType ActualRhsType;
225
+
226
+ typedef Map<Matrix<ResScalar,Dynamic,1>, EIGEN_PLAIN_ENUM_MIN(AlignedMax,internal::packet_traits<ResScalar>::size)> MappedDest;
227
+
228
+ ActualLhsType actualLhs = LhsBlasTraits::extract(lhs);
229
+ ActualRhsType actualRhs = RhsBlasTraits::extract(rhs);
230
+
231
+ ResScalar actualAlpha = combine_scalar_factors(alpha, lhs, rhs);
232
+
233
+ // make sure Dest is a compile-time vector type (bug 1166)
234
+ typedef typename conditional<Dest::IsVectorAtCompileTime, Dest, typename Dest::ColXpr>::type ActualDest;
235
+
236
+ enum {
237
+ // FIXME find a way to allow an inner stride on the result if packet_traits<Scalar>::size==1
238
+ // on, the other hand it is good for the cache to pack the vector anyways...
239
+ EvalToDestAtCompileTime = (ActualDest::InnerStrideAtCompileTime==1),
240
+ ComplexByReal = (NumTraits<LhsScalar>::IsComplex) && (!NumTraits<RhsScalar>::IsComplex),
241
+ MightCannotUseDest = ((!EvalToDestAtCompileTime) || ComplexByReal) && (ActualDest::MaxSizeAtCompileTime!=0)
242
+ };
243
+
244
+ typedef const_blas_data_mapper<LhsScalar,Index,ColMajor> LhsMapper;
245
+ typedef const_blas_data_mapper<RhsScalar,Index,RowMajor> RhsMapper;
246
+ RhsScalar compatibleAlpha = get_factor<ResScalar,RhsScalar>::run(actualAlpha);
247
+
248
+ if(!MightCannotUseDest)
249
+ {
250
+ // shortcut if we are sure to be able to use dest directly,
251
+ // this ease the compiler to generate cleaner and more optimzized code for most common cases
252
+ general_matrix_vector_product
253
+ <Index,LhsScalar,LhsMapper,ColMajor,LhsBlasTraits::NeedToConjugate,RhsScalar,RhsMapper,RhsBlasTraits::NeedToConjugate>::run(
254
+ actualLhs.rows(), actualLhs.cols(),
255
+ LhsMapper(actualLhs.data(), actualLhs.outerStride()),
256
+ RhsMapper(actualRhs.data(), actualRhs.innerStride()),
257
+ dest.data(), 1,
258
+ compatibleAlpha);
259
+ }
260
+ else
261
+ {
262
+ gemv_static_vector_if<ResScalar,ActualDest::SizeAtCompileTime,ActualDest::MaxSizeAtCompileTime,MightCannotUseDest> static_dest;
263
+
264
+ const bool alphaIsCompatible = (!ComplexByReal) || (numext::imag(actualAlpha)==RealScalar(0));
265
+ const bool evalToDest = EvalToDestAtCompileTime && alphaIsCompatible;
266
+
267
+ ei_declare_aligned_stack_constructed_variable(ResScalar,actualDestPtr,dest.size(),
268
+ evalToDest ? dest.data() : static_dest.data());
269
+
270
+ if(!evalToDest)
271
+ {
272
+ #ifdef EIGEN_DENSE_STORAGE_CTOR_PLUGIN
273
+ Index size = dest.size();
274
+ EIGEN_DENSE_STORAGE_CTOR_PLUGIN
275
+ #endif
276
+ if(!alphaIsCompatible)
277
+ {
278
+ MappedDest(actualDestPtr, dest.size()).setZero();
279
+ compatibleAlpha = RhsScalar(1);
280
+ }
281
+ else
282
+ MappedDest(actualDestPtr, dest.size()) = dest;
283
+ }
284
+
285
+ general_matrix_vector_product
286
+ <Index,LhsScalar,LhsMapper,ColMajor,LhsBlasTraits::NeedToConjugate,RhsScalar,RhsMapper,RhsBlasTraits::NeedToConjugate>::run(
287
+ actualLhs.rows(), actualLhs.cols(),
288
+ LhsMapper(actualLhs.data(), actualLhs.outerStride()),
289
+ RhsMapper(actualRhs.data(), actualRhs.innerStride()),
290
+ actualDestPtr, 1,
291
+ compatibleAlpha);
292
+
293
+ if (!evalToDest)
294
+ {
295
+ if(!alphaIsCompatible)
296
+ dest.matrix() += actualAlpha * MappedDest(actualDestPtr, dest.size());
297
+ else
298
+ dest = MappedDest(actualDestPtr, dest.size());
299
+ }
300
+ }
301
+ }
302
+ };
303
+
304
+ template<> struct gemv_dense_selector<OnTheRight,RowMajor,true>
305
+ {
306
+ template<typename Lhs, typename Rhs, typename Dest>
307
+ static void run(const Lhs &lhs, const Rhs &rhs, Dest& dest, const typename Dest::Scalar& alpha)
308
+ {
309
+ typedef typename Lhs::Scalar LhsScalar;
310
+ typedef typename Rhs::Scalar RhsScalar;
311
+ typedef typename Dest::Scalar ResScalar;
312
+
313
+ typedef internal::blas_traits<Lhs> LhsBlasTraits;
314
+ typedef typename LhsBlasTraits::DirectLinearAccessType ActualLhsType;
315
+ typedef internal::blas_traits<Rhs> RhsBlasTraits;
316
+ typedef typename RhsBlasTraits::DirectLinearAccessType ActualRhsType;
317
+ typedef typename internal::remove_all<ActualRhsType>::type ActualRhsTypeCleaned;
318
+
319
+ typename add_const<ActualLhsType>::type actualLhs = LhsBlasTraits::extract(lhs);
320
+ typename add_const<ActualRhsType>::type actualRhs = RhsBlasTraits::extract(rhs);
321
+
322
+ ResScalar actualAlpha = combine_scalar_factors(alpha, lhs, rhs);
323
+
324
+ enum {
325
+ // FIXME find a way to allow an inner stride on the result if packet_traits<Scalar>::size==1
326
+ // on, the other hand it is good for the cache to pack the vector anyways...
327
+ DirectlyUseRhs = ActualRhsTypeCleaned::InnerStrideAtCompileTime==1 || ActualRhsTypeCleaned::MaxSizeAtCompileTime==0
328
+ };
329
+
330
+ gemv_static_vector_if<RhsScalar,ActualRhsTypeCleaned::SizeAtCompileTime,ActualRhsTypeCleaned::MaxSizeAtCompileTime,!DirectlyUseRhs> static_rhs;
331
+
332
+ ei_declare_aligned_stack_constructed_variable(RhsScalar,actualRhsPtr,actualRhs.size(),
333
+ DirectlyUseRhs ? const_cast<RhsScalar*>(actualRhs.data()) : static_rhs.data());
334
+
335
+ if(!DirectlyUseRhs)
336
+ {
337
+ #ifdef EIGEN_DENSE_STORAGE_CTOR_PLUGIN
338
+ Index size = actualRhs.size();
339
+ EIGEN_DENSE_STORAGE_CTOR_PLUGIN
340
+ #endif
341
+ Map<typename ActualRhsTypeCleaned::PlainObject>(actualRhsPtr, actualRhs.size()) = actualRhs;
342
+ }
343
+
344
+ typedef const_blas_data_mapper<LhsScalar,Index,RowMajor> LhsMapper;
345
+ typedef const_blas_data_mapper<RhsScalar,Index,ColMajor> RhsMapper;
346
+ general_matrix_vector_product
347
+ <Index,LhsScalar,LhsMapper,RowMajor,LhsBlasTraits::NeedToConjugate,RhsScalar,RhsMapper,RhsBlasTraits::NeedToConjugate>::run(
348
+ actualLhs.rows(), actualLhs.cols(),
349
+ LhsMapper(actualLhs.data(), actualLhs.outerStride()),
350
+ RhsMapper(actualRhsPtr, 1),
351
+ dest.data(), dest.col(0).innerStride(), //NOTE if dest is not a vector at compile-time, then dest.innerStride() might be wrong. (bug 1166)
352
+ actualAlpha);
353
+ }
354
+ };
355
+
356
+ template<> struct gemv_dense_selector<OnTheRight,ColMajor,false>
357
+ {
358
+ template<typename Lhs, typename Rhs, typename Dest>
359
+ static void run(const Lhs &lhs, const Rhs &rhs, Dest& dest, const typename Dest::Scalar& alpha)
360
+ {
361
+ EIGEN_STATIC_ASSERT((!nested_eval<Lhs,1>::Evaluate),EIGEN_INTERNAL_COMPILATION_ERROR_OR_YOU_MADE_A_PROGRAMMING_MISTAKE);
362
+ // TODO if rhs is large enough it might be beneficial to make sure that dest is sequentially stored in memory, otherwise use a temp
363
+ typename nested_eval<Rhs,1>::type actual_rhs(rhs);
364
+ const Index size = rhs.rows();
365
+ for(Index k=0; k<size; ++k)
366
+ dest += (alpha*actual_rhs.coeff(k)) * lhs.col(k);
367
+ }
368
+ };
369
+
370
+ template<> struct gemv_dense_selector<OnTheRight,RowMajor,false>
371
+ {
372
+ template<typename Lhs, typename Rhs, typename Dest>
373
+ static void run(const Lhs &lhs, const Rhs &rhs, Dest& dest, const typename Dest::Scalar& alpha)
374
+ {
375
+ EIGEN_STATIC_ASSERT((!nested_eval<Lhs,1>::Evaluate),EIGEN_INTERNAL_COMPILATION_ERROR_OR_YOU_MADE_A_PROGRAMMING_MISTAKE);
376
+ typename nested_eval<Rhs,Lhs::RowsAtCompileTime>::type actual_rhs(rhs);
377
+ const Index rows = dest.rows();
378
+ for(Index i=0; i<rows; ++i)
379
+ dest.coeffRef(i) += alpha * (lhs.row(i).cwiseProduct(actual_rhs.transpose())).sum();
380
+ }
381
+ };
382
+
383
+ } // end namespace internal
384
+
385
+ /***************************************************************************
386
+ * Implementation of matrix base methods
387
+ ***************************************************************************/
388
+
389
+ /** \returns the matrix product of \c *this and \a other.
390
+ *
391
+ * \note If instead of the matrix product you want the coefficient-wise product, see Cwise::operator*().
392
+ *
393
+ * \sa lazyProduct(), operator*=(const MatrixBase&), Cwise::operator*()
394
+ */
395
+ template<typename Derived>
396
+ template<typename OtherDerived>
397
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
398
+ const Product<Derived, OtherDerived>
399
+ MatrixBase<Derived>::operator*(const MatrixBase<OtherDerived> &other) const
400
+ {
401
+ // A note regarding the function declaration: In MSVC, this function will sometimes
402
+ // not be inlined since DenseStorage is an unwindable object for dynamic
403
+ // matrices and product types are holding a member to store the result.
404
+ // Thus it does not help tagging this function with EIGEN_STRONG_INLINE.
405
+ enum {
406
+ ProductIsValid = Derived::ColsAtCompileTime==Dynamic
407
+ || OtherDerived::RowsAtCompileTime==Dynamic
408
+ || int(Derived::ColsAtCompileTime)==int(OtherDerived::RowsAtCompileTime),
409
+ AreVectors = Derived::IsVectorAtCompileTime && OtherDerived::IsVectorAtCompileTime,
410
+ SameSizes = EIGEN_PREDICATE_SAME_MATRIX_SIZE(Derived,OtherDerived)
411
+ };
412
+ // note to the lost user:
413
+ // * for a dot product use: v1.dot(v2)
414
+ // * for a coeff-wise product use: v1.cwiseProduct(v2)
415
+ EIGEN_STATIC_ASSERT(ProductIsValid || !(AreVectors && SameSizes),
416
+ INVALID_VECTOR_VECTOR_PRODUCT__IF_YOU_WANTED_A_DOT_OR_COEFF_WISE_PRODUCT_YOU_MUST_USE_THE_EXPLICIT_FUNCTIONS)
417
+ EIGEN_STATIC_ASSERT(ProductIsValid || !(SameSizes && !AreVectors),
418
+ INVALID_MATRIX_PRODUCT__IF_YOU_WANTED_A_COEFF_WISE_PRODUCT_YOU_MUST_USE_THE_EXPLICIT_FUNCTION)
419
+ EIGEN_STATIC_ASSERT(ProductIsValid || SameSizes, INVALID_MATRIX_PRODUCT)
420
+ #ifdef EIGEN_DEBUG_PRODUCT
421
+ internal::product_type<Derived,OtherDerived>::debug();
422
+ #endif
423
+
424
+ return Product<Derived, OtherDerived>(derived(), other.derived());
425
+ }
426
+
427
+ /** \returns an expression of the matrix product of \c *this and \a other without implicit evaluation.
428
+ *
429
+ * The returned product will behave like any other expressions: the coefficients of the product will be
430
+ * computed once at a time as requested. This might be useful in some extremely rare cases when only
431
+ * a small and no coherent fraction of the result's coefficients have to be computed.
432
+ *
433
+ * \warning This version of the matrix product can be much much slower. So use it only if you know
434
+ * what you are doing and that you measured a true speed improvement.
435
+ *
436
+ * \sa operator*(const MatrixBase&)
437
+ */
438
+ template<typename Derived>
439
+ template<typename OtherDerived>
440
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
441
+ const Product<Derived,OtherDerived,LazyProduct>
442
+ MatrixBase<Derived>::lazyProduct(const MatrixBase<OtherDerived> &other) const
443
+ {
444
+ enum {
445
+ ProductIsValid = Derived::ColsAtCompileTime==Dynamic
446
+ || OtherDerived::RowsAtCompileTime==Dynamic
447
+ || int(Derived::ColsAtCompileTime)==int(OtherDerived::RowsAtCompileTime),
448
+ AreVectors = Derived::IsVectorAtCompileTime && OtherDerived::IsVectorAtCompileTime,
449
+ SameSizes = EIGEN_PREDICATE_SAME_MATRIX_SIZE(Derived,OtherDerived)
450
+ };
451
+ // note to the lost user:
452
+ // * for a dot product use: v1.dot(v2)
453
+ // * for a coeff-wise product use: v1.cwiseProduct(v2)
454
+ EIGEN_STATIC_ASSERT(ProductIsValid || !(AreVectors && SameSizes),
455
+ INVALID_VECTOR_VECTOR_PRODUCT__IF_YOU_WANTED_A_DOT_OR_COEFF_WISE_PRODUCT_YOU_MUST_USE_THE_EXPLICIT_FUNCTIONS)
456
+ EIGEN_STATIC_ASSERT(ProductIsValid || !(SameSizes && !AreVectors),
457
+ INVALID_MATRIX_PRODUCT__IF_YOU_WANTED_A_COEFF_WISE_PRODUCT_YOU_MUST_USE_THE_EXPLICIT_FUNCTION)
458
+ EIGEN_STATIC_ASSERT(ProductIsValid || SameSizes, INVALID_MATRIX_PRODUCT)
459
+
460
+ return Product<Derived,OtherDerived,LazyProduct>(derived(), other.derived());
461
+ }
462
+
463
+ } // end namespace Eigen
464
+
465
+ #endif // EIGEN_PRODUCT_H