umappp 0.1.2

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Files changed (395) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +25 -0
  3. data/README.md +110 -0
  4. data/ext/umappp/extconf.rb +25 -0
  5. data/ext/umappp/numo.hpp +867 -0
  6. data/ext/umappp/umappp.cpp +225 -0
  7. data/lib/umappp/version.rb +5 -0
  8. data/lib/umappp.rb +41 -0
  9. data/vendor/Eigen/Cholesky +45 -0
  10. data/vendor/Eigen/CholmodSupport +48 -0
  11. data/vendor/Eigen/Core +384 -0
  12. data/vendor/Eigen/Dense +7 -0
  13. data/vendor/Eigen/Eigen +2 -0
  14. data/vendor/Eigen/Eigenvalues +60 -0
  15. data/vendor/Eigen/Geometry +59 -0
  16. data/vendor/Eigen/Householder +29 -0
  17. data/vendor/Eigen/IterativeLinearSolvers +48 -0
  18. data/vendor/Eigen/Jacobi +32 -0
  19. data/vendor/Eigen/KLUSupport +41 -0
  20. data/vendor/Eigen/LU +47 -0
  21. data/vendor/Eigen/MetisSupport +35 -0
  22. data/vendor/Eigen/OrderingMethods +70 -0
  23. data/vendor/Eigen/PaStiXSupport +49 -0
  24. data/vendor/Eigen/PardisoSupport +35 -0
  25. data/vendor/Eigen/QR +50 -0
  26. data/vendor/Eigen/QtAlignedMalloc +39 -0
  27. data/vendor/Eigen/SPQRSupport +34 -0
  28. data/vendor/Eigen/SVD +50 -0
  29. data/vendor/Eigen/Sparse +34 -0
  30. data/vendor/Eigen/SparseCholesky +37 -0
  31. data/vendor/Eigen/SparseCore +69 -0
  32. data/vendor/Eigen/SparseLU +50 -0
  33. data/vendor/Eigen/SparseQR +36 -0
  34. data/vendor/Eigen/StdDeque +27 -0
  35. data/vendor/Eigen/StdList +26 -0
  36. data/vendor/Eigen/StdVector +27 -0
  37. data/vendor/Eigen/SuperLUSupport +64 -0
  38. data/vendor/Eigen/UmfPackSupport +40 -0
  39. data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
  40. data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
  41. data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  42. data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
  43. data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
  44. data/vendor/Eigen/src/Core/Array.h +417 -0
  45. data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
  46. data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
  47. data/vendor/Eigen/src/Core/Assign.h +90 -0
  48. data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
  49. data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
  50. data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
  51. data/vendor/Eigen/src/Core/Block.h +448 -0
  52. data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
  53. data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
  54. data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
  55. data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
  56. data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
  57. data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
  58. data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
  59. data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  60. data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  61. data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
  62. data/vendor/Eigen/src/Core/DenseBase.h +701 -0
  63. data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
  64. data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
  65. data/vendor/Eigen/src/Core/Diagonal.h +258 -0
  66. data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
  67. data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
  68. data/vendor/Eigen/src/Core/Dot.h +318 -0
  69. data/vendor/Eigen/src/Core/EigenBase.h +160 -0
  70. data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
  71. data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
  72. data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
  73. data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
  74. data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
  75. data/vendor/Eigen/src/Core/IO.h +258 -0
  76. data/vendor/Eigen/src/Core/IndexedView.h +237 -0
  77. data/vendor/Eigen/src/Core/Inverse.h +117 -0
  78. data/vendor/Eigen/src/Core/Map.h +171 -0
  79. data/vendor/Eigen/src/Core/MapBase.h +310 -0
  80. data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
  81. data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
  82. data/vendor/Eigen/src/Core/Matrix.h +565 -0
  83. data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
  84. data/vendor/Eigen/src/Core/NestByValue.h +85 -0
  85. data/vendor/Eigen/src/Core/NoAlias.h +109 -0
  86. data/vendor/Eigen/src/Core/NumTraits.h +335 -0
  87. data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  88. data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
  89. data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
  90. data/vendor/Eigen/src/Core/Product.h +191 -0
  91. data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
  92. data/vendor/Eigen/src/Core/Random.h +218 -0
  93. data/vendor/Eigen/src/Core/Redux.h +515 -0
  94. data/vendor/Eigen/src/Core/Ref.h +381 -0
  95. data/vendor/Eigen/src/Core/Replicate.h +142 -0
  96. data/vendor/Eigen/src/Core/Reshaped.h +454 -0
  97. data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
  98. data/vendor/Eigen/src/Core/Reverse.h +217 -0
  99. data/vendor/Eigen/src/Core/Select.h +164 -0
  100. data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
  101. data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  102. data/vendor/Eigen/src/Core/Solve.h +188 -0
  103. data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
  104. data/vendor/Eigen/src/Core/SolverBase.h +168 -0
  105. data/vendor/Eigen/src/Core/StableNorm.h +251 -0
  106. data/vendor/Eigen/src/Core/StlIterators.h +463 -0
  107. data/vendor/Eigen/src/Core/Stride.h +116 -0
  108. data/vendor/Eigen/src/Core/Swap.h +68 -0
  109. data/vendor/Eigen/src/Core/Transpose.h +464 -0
  110. data/vendor/Eigen/src/Core/Transpositions.h +386 -0
  111. data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
  112. data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
  113. data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
  114. data/vendor/Eigen/src/Core/Visitor.h +381 -0
  115. data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
  116. data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
  117. data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
  118. data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
  119. data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  120. data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
  121. data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
  122. data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  123. data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
  124. data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
  125. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  126. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  127. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  128. data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
  129. data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
  130. data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  131. data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
  132. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  133. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  134. data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
  135. data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
  136. data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  137. data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
  138. data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  139. data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  140. data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  141. data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  142. data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  143. data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  144. data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
  145. data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  146. data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
  147. data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
  148. data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  149. data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
  150. data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
  151. data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
  152. data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
  153. data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  154. data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  155. data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  156. data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  157. data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  158. data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  159. data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  160. data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  161. data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
  162. data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
  163. data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
  164. data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
  165. data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
  166. data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
  167. data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
  168. data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  169. data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
  170. data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
  171. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
  172. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
  173. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  174. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
  175. data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
  176. data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  177. data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
  178. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
  179. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
  180. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
  181. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  182. data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  183. data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
  184. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
  185. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
  186. data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  187. data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  188. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
  189. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
  190. data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
  191. data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
  192. data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  193. data/vendor/Eigen/src/Core/util/Constants.h +563 -0
  194. data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
  195. data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
  196. data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  197. data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
  198. data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
  199. data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
  200. data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
  201. data/vendor/Eigen/src/Core/util/Meta.h +812 -0
  202. data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
  203. data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
  204. data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  205. data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
  206. data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  207. data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
  208. data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  209. data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
  210. data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  211. data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  212. data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  213. data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  214. data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  215. data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  216. data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
  217. data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
  218. data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  219. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
  220. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  221. data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
  222. data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
  223. data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
  224. data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
  225. data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
  226. data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
  227. data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
  228. data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
  229. data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
  230. data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
  231. data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
  232. data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
  233. data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
  234. data/vendor/Eigen/src/Geometry/Translation.h +202 -0
  235. data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
  236. data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  237. data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
  238. data/vendor/Eigen/src/Householder/Householder.h +176 -0
  239. data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
  240. data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  241. data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
  242. data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
  243. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
  244. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
  245. data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
  246. data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
  247. data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
  248. data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
  249. data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  250. data/vendor/Eigen/src/LU/Determinant.h +117 -0
  251. data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
  252. data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
  253. data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
  254. data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  255. data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
  256. data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  257. data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
  258. data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
  259. data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
  260. data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  261. data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
  262. data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
  263. data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  264. data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
  265. data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
  266. data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
  267. data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  268. data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
  269. data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
  270. data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
  271. data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  272. data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
  273. data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  274. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
  275. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
  276. data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
  277. data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
  278. data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  279. data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  280. data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
  281. data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
  282. data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  283. data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
  284. data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
  285. data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
  286. data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
  287. data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  288. data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
  289. data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  290. data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
  291. data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
  292. data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
  293. data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  294. data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
  295. data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
  296. data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
  297. data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
  298. data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  299. data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  300. data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  301. data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  302. data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
  303. data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
  304. data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
  305. data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  306. data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
  307. data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  308. data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  309. data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  310. data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
  311. data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  312. data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  313. data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  314. data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  315. data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  316. data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  317. data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  318. data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  319. data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  320. data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  321. data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  322. data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  323. data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
  324. data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
  325. data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
  326. data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
  327. data/vendor/Eigen/src/StlSupport/details.h +84 -0
  328. data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
  329. data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
  330. data/vendor/Eigen/src/misc/Image.h +82 -0
  331. data/vendor/Eigen/src/misc/Kernel.h +79 -0
  332. data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
  333. data/vendor/Eigen/src/misc/blas.h +440 -0
  334. data/vendor/Eigen/src/misc/lapack.h +152 -0
  335. data/vendor/Eigen/src/misc/lapacke.h +16292 -0
  336. data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
  337. data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
  338. data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
  339. data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
  340. data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  341. data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
  342. data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  343. data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  344. data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
  345. data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
  346. data/vendor/aarand/aarand.hpp +114 -0
  347. data/vendor/annoy/annoylib.h +1495 -0
  348. data/vendor/annoy/kissrandom.h +120 -0
  349. data/vendor/annoy/mman.h +242 -0
  350. data/vendor/hnswlib/bruteforce.h +152 -0
  351. data/vendor/hnswlib/hnswalg.h +1192 -0
  352. data/vendor/hnswlib/hnswlib.h +108 -0
  353. data/vendor/hnswlib/space_ip.h +282 -0
  354. data/vendor/hnswlib/space_l2.h +281 -0
  355. data/vendor/hnswlib/visited_list_pool.h +79 -0
  356. data/vendor/irlba/irlba.hpp +575 -0
  357. data/vendor/irlba/lanczos.hpp +212 -0
  358. data/vendor/irlba/parallel.hpp +474 -0
  359. data/vendor/irlba/utils.hpp +224 -0
  360. data/vendor/irlba/wrappers.hpp +228 -0
  361. data/vendor/kmeans/Base.hpp +75 -0
  362. data/vendor/kmeans/Details.hpp +79 -0
  363. data/vendor/kmeans/HartiganWong.hpp +492 -0
  364. data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
  365. data/vendor/kmeans/InitializeNone.hpp +44 -0
  366. data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
  367. data/vendor/kmeans/InitializeRandom.hpp +91 -0
  368. data/vendor/kmeans/Kmeans.hpp +161 -0
  369. data/vendor/kmeans/Lloyd.hpp +134 -0
  370. data/vendor/kmeans/MiniBatch.hpp +269 -0
  371. data/vendor/kmeans/QuickSearch.hpp +179 -0
  372. data/vendor/kmeans/compute_centroids.hpp +32 -0
  373. data/vendor/kmeans/compute_wcss.hpp +27 -0
  374. data/vendor/kmeans/is_edge_case.hpp +42 -0
  375. data/vendor/kmeans/random.hpp +55 -0
  376. data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
  377. data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
  378. data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
  379. data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
  380. data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
  381. data/vendor/knncolle/knncolle.hpp +34 -0
  382. data/vendor/knncolle/utils/Base.hpp +100 -0
  383. data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
  384. data/vendor/knncolle/utils/distances.hpp +98 -0
  385. data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
  386. data/vendor/powerit/PowerIterations.hpp +157 -0
  387. data/vendor/umappp/NeighborList.hpp +37 -0
  388. data/vendor/umappp/Umap.hpp +662 -0
  389. data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
  390. data/vendor/umappp/find_ab.hpp +157 -0
  391. data/vendor/umappp/neighbor_similarities.hpp +136 -0
  392. data/vendor/umappp/optimize_layout.hpp +285 -0
  393. data/vendor/umappp/spectral_init.hpp +181 -0
  394. data/vendor/umappp/umappp.hpp +13 -0
  395. metadata +465 -0
@@ -0,0 +1,317 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2009-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_GENERAL_MATRIX_MATRIX_TRIANGULAR_H
11
+ #define EIGEN_GENERAL_MATRIX_MATRIX_TRIANGULAR_H
12
+
13
+ namespace Eigen {
14
+
15
+ template<typename Scalar, typename Index, int StorageOrder, int UpLo, bool ConjLhs, bool ConjRhs>
16
+ struct selfadjoint_rank1_update;
17
+
18
+ namespace internal {
19
+
20
+ /**********************************************************************
21
+ * This file implements a general A * B product while
22
+ * evaluating only one triangular part of the product.
23
+ * This is a more general version of self adjoint product (C += A A^T)
24
+ * as the level 3 SYRK Blas routine.
25
+ **********************************************************************/
26
+
27
+ // forward declarations (defined at the end of this file)
28
+ template<typename LhsScalar, typename RhsScalar, typename Index, int mr, int nr, bool ConjLhs, bool ConjRhs, int ResInnerStride, int UpLo>
29
+ struct tribb_kernel;
30
+
31
+ /* Optimized matrix-matrix product evaluating only one triangular half */
32
+ template <typename Index,
33
+ typename LhsScalar, int LhsStorageOrder, bool ConjugateLhs,
34
+ typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs,
35
+ int ResStorageOrder, int ResInnerStride, int UpLo, int Version = Specialized>
36
+ struct general_matrix_matrix_triangular_product;
37
+
38
+ // as usual if the result is row major => we transpose the product
39
+ template <typename Index, typename LhsScalar, int LhsStorageOrder, bool ConjugateLhs,
40
+ typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs,
41
+ int ResInnerStride, int UpLo, int Version>
42
+ struct general_matrix_matrix_triangular_product<Index,LhsScalar,LhsStorageOrder,ConjugateLhs,RhsScalar,RhsStorageOrder,ConjugateRhs,RowMajor,ResInnerStride,UpLo,Version>
43
+ {
44
+ typedef typename ScalarBinaryOpTraits<LhsScalar, RhsScalar>::ReturnType ResScalar;
45
+ static EIGEN_STRONG_INLINE void run(Index size, Index depth,const LhsScalar* lhs, Index lhsStride,
46
+ const RhsScalar* rhs, Index rhsStride, ResScalar* res, Index resIncr, Index resStride,
47
+ const ResScalar& alpha, level3_blocking<RhsScalar,LhsScalar>& blocking)
48
+ {
49
+ general_matrix_matrix_triangular_product<Index,
50
+ RhsScalar, RhsStorageOrder==RowMajor ? ColMajor : RowMajor, ConjugateRhs,
51
+ LhsScalar, LhsStorageOrder==RowMajor ? ColMajor : RowMajor, ConjugateLhs,
52
+ ColMajor, ResInnerStride, UpLo==Lower?Upper:Lower>
53
+ ::run(size,depth,rhs,rhsStride,lhs,lhsStride,res,resIncr,resStride,alpha,blocking);
54
+ }
55
+ };
56
+
57
+ template <typename Index, typename LhsScalar, int LhsStorageOrder, bool ConjugateLhs,
58
+ typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs,
59
+ int ResInnerStride, int UpLo, int Version>
60
+ struct general_matrix_matrix_triangular_product<Index,LhsScalar,LhsStorageOrder,ConjugateLhs,RhsScalar,RhsStorageOrder,ConjugateRhs,ColMajor,ResInnerStride,UpLo,Version>
61
+ {
62
+ typedef typename ScalarBinaryOpTraits<LhsScalar, RhsScalar>::ReturnType ResScalar;
63
+ static EIGEN_STRONG_INLINE void run(Index size, Index depth,const LhsScalar* _lhs, Index lhsStride,
64
+ const RhsScalar* _rhs, Index rhsStride,
65
+ ResScalar* _res, Index resIncr, Index resStride,
66
+ const ResScalar& alpha, level3_blocking<LhsScalar,RhsScalar>& blocking)
67
+ {
68
+ typedef gebp_traits<LhsScalar,RhsScalar> Traits;
69
+
70
+ typedef const_blas_data_mapper<LhsScalar, Index, LhsStorageOrder> LhsMapper;
71
+ typedef const_blas_data_mapper<RhsScalar, Index, RhsStorageOrder> RhsMapper;
72
+ typedef blas_data_mapper<typename Traits::ResScalar, Index, ColMajor, Unaligned, ResInnerStride> ResMapper;
73
+ LhsMapper lhs(_lhs,lhsStride);
74
+ RhsMapper rhs(_rhs,rhsStride);
75
+ ResMapper res(_res, resStride, resIncr);
76
+
77
+ Index kc = blocking.kc();
78
+ Index mc = (std::min)(size,blocking.mc());
79
+
80
+ // !!! mc must be a multiple of nr:
81
+ if(mc > Traits::nr)
82
+ mc = (mc/Traits::nr)*Traits::nr;
83
+
84
+ std::size_t sizeA = kc*mc;
85
+ std::size_t sizeB = kc*size;
86
+
87
+ ei_declare_aligned_stack_constructed_variable(LhsScalar, blockA, sizeA, blocking.blockA());
88
+ ei_declare_aligned_stack_constructed_variable(RhsScalar, blockB, sizeB, blocking.blockB());
89
+
90
+ gemm_pack_lhs<LhsScalar, Index, LhsMapper, Traits::mr, Traits::LhsProgress, typename Traits::LhsPacket4Packing, LhsStorageOrder> pack_lhs;
91
+ gemm_pack_rhs<RhsScalar, Index, RhsMapper, Traits::nr, RhsStorageOrder> pack_rhs;
92
+ gebp_kernel<LhsScalar, RhsScalar, Index, ResMapper, Traits::mr, Traits::nr, ConjugateLhs, ConjugateRhs> gebp;
93
+ tribb_kernel<LhsScalar, RhsScalar, Index, Traits::mr, Traits::nr, ConjugateLhs, ConjugateRhs, ResInnerStride, UpLo> sybb;
94
+
95
+ for(Index k2=0; k2<depth; k2+=kc)
96
+ {
97
+ const Index actual_kc = (std::min)(k2+kc,depth)-k2;
98
+
99
+ // note that the actual rhs is the transpose/adjoint of mat
100
+ pack_rhs(blockB, rhs.getSubMapper(k2,0), actual_kc, size);
101
+
102
+ for(Index i2=0; i2<size; i2+=mc)
103
+ {
104
+ const Index actual_mc = (std::min)(i2+mc,size)-i2;
105
+
106
+ pack_lhs(blockA, lhs.getSubMapper(i2, k2), actual_kc, actual_mc);
107
+
108
+ // the selected actual_mc * size panel of res is split into three different part:
109
+ // 1 - before the diagonal => processed with gebp or skipped
110
+ // 2 - the actual_mc x actual_mc symmetric block => processed with a special kernel
111
+ // 3 - after the diagonal => processed with gebp or skipped
112
+ if (UpLo==Lower)
113
+ gebp(res.getSubMapper(i2, 0), blockA, blockB, actual_mc, actual_kc,
114
+ (std::min)(size,i2), alpha, -1, -1, 0, 0);
115
+
116
+ sybb(_res+resStride*i2 + resIncr*i2, resIncr, resStride, blockA, blockB + actual_kc*i2, actual_mc, actual_kc, alpha);
117
+
118
+ if (UpLo==Upper)
119
+ {
120
+ Index j2 = i2+actual_mc;
121
+ gebp(res.getSubMapper(i2, j2), blockA, blockB+actual_kc*j2, actual_mc,
122
+ actual_kc, (std::max)(Index(0), size-j2), alpha, -1, -1, 0, 0);
123
+ }
124
+ }
125
+ }
126
+ }
127
+ };
128
+
129
+ // Optimized packed Block * packed Block product kernel evaluating only one given triangular part
130
+ // This kernel is built on top of the gebp kernel:
131
+ // - the current destination block is processed per panel of actual_mc x BlockSize
132
+ // where BlockSize is set to the minimal value allowing gebp to be as fast as possible
133
+ // - then, as usual, each panel is split into three parts along the diagonal,
134
+ // the sub blocks above and below the diagonal are processed as usual,
135
+ // while the triangular block overlapping the diagonal is evaluated into a
136
+ // small temporary buffer which is then accumulated into the result using a
137
+ // triangular traversal.
138
+ template<typename LhsScalar, typename RhsScalar, typename Index, int mr, int nr, bool ConjLhs, bool ConjRhs, int ResInnerStride, int UpLo>
139
+ struct tribb_kernel
140
+ {
141
+ typedef gebp_traits<LhsScalar,RhsScalar,ConjLhs,ConjRhs> Traits;
142
+ typedef typename Traits::ResScalar ResScalar;
143
+
144
+ enum {
145
+ BlockSize = meta_least_common_multiple<EIGEN_PLAIN_ENUM_MAX(mr,nr),EIGEN_PLAIN_ENUM_MIN(mr,nr)>::ret
146
+ };
147
+ void operator()(ResScalar* _res, Index resIncr, Index resStride, const LhsScalar* blockA, const RhsScalar* blockB, Index size, Index depth, const ResScalar& alpha)
148
+ {
149
+ typedef blas_data_mapper<ResScalar, Index, ColMajor, Unaligned, ResInnerStride> ResMapper;
150
+ typedef blas_data_mapper<ResScalar, Index, ColMajor, Unaligned> BufferMapper;
151
+ ResMapper res(_res, resStride, resIncr);
152
+ gebp_kernel<LhsScalar, RhsScalar, Index, ResMapper, mr, nr, ConjLhs, ConjRhs> gebp_kernel1;
153
+ gebp_kernel<LhsScalar, RhsScalar, Index, BufferMapper, mr, nr, ConjLhs, ConjRhs> gebp_kernel2;
154
+
155
+ Matrix<ResScalar,BlockSize,BlockSize,ColMajor> buffer((internal::constructor_without_unaligned_array_assert()));
156
+
157
+ // let's process the block per panel of actual_mc x BlockSize,
158
+ // again, each is split into three parts, etc.
159
+ for (Index j=0; j<size; j+=BlockSize)
160
+ {
161
+ Index actualBlockSize = std::min<Index>(BlockSize,size - j);
162
+ const RhsScalar* actual_b = blockB+j*depth;
163
+
164
+ if(UpLo==Upper)
165
+ gebp_kernel1(res.getSubMapper(0, j), blockA, actual_b, j, depth, actualBlockSize, alpha,
166
+ -1, -1, 0, 0);
167
+
168
+ // selfadjoint micro block
169
+ {
170
+ Index i = j;
171
+ buffer.setZero();
172
+ // 1 - apply the kernel on the temporary buffer
173
+ gebp_kernel2(BufferMapper(buffer.data(), BlockSize), blockA+depth*i, actual_b, actualBlockSize, depth, actualBlockSize, alpha,
174
+ -1, -1, 0, 0);
175
+
176
+ // 2 - triangular accumulation
177
+ for(Index j1=0; j1<actualBlockSize; ++j1)
178
+ {
179
+ typename ResMapper::LinearMapper r = res.getLinearMapper(i,j+j1);
180
+ for(Index i1=UpLo==Lower ? j1 : 0;
181
+ UpLo==Lower ? i1<actualBlockSize : i1<=j1; ++i1)
182
+ r(i1) += buffer(i1,j1);
183
+ }
184
+ }
185
+
186
+ if(UpLo==Lower)
187
+ {
188
+ Index i = j+actualBlockSize;
189
+ gebp_kernel1(res.getSubMapper(i, j), blockA+depth*i, actual_b, size-i,
190
+ depth, actualBlockSize, alpha, -1, -1, 0, 0);
191
+ }
192
+ }
193
+ }
194
+ };
195
+
196
+ } // end namespace internal
197
+
198
+ // high level API
199
+
200
+ template<typename MatrixType, typename ProductType, int UpLo, bool IsOuterProduct>
201
+ struct general_product_to_triangular_selector;
202
+
203
+
204
+ template<typename MatrixType, typename ProductType, int UpLo>
205
+ struct general_product_to_triangular_selector<MatrixType,ProductType,UpLo,true>
206
+ {
207
+ static void run(MatrixType& mat, const ProductType& prod, const typename MatrixType::Scalar& alpha, bool beta)
208
+ {
209
+ typedef typename MatrixType::Scalar Scalar;
210
+
211
+ typedef typename internal::remove_all<typename ProductType::LhsNested>::type Lhs;
212
+ typedef internal::blas_traits<Lhs> LhsBlasTraits;
213
+ typedef typename LhsBlasTraits::DirectLinearAccessType ActualLhs;
214
+ typedef typename internal::remove_all<ActualLhs>::type _ActualLhs;
215
+ typename internal::add_const_on_value_type<ActualLhs>::type actualLhs = LhsBlasTraits::extract(prod.lhs());
216
+
217
+ typedef typename internal::remove_all<typename ProductType::RhsNested>::type Rhs;
218
+ typedef internal::blas_traits<Rhs> RhsBlasTraits;
219
+ typedef typename RhsBlasTraits::DirectLinearAccessType ActualRhs;
220
+ typedef typename internal::remove_all<ActualRhs>::type _ActualRhs;
221
+ typename internal::add_const_on_value_type<ActualRhs>::type actualRhs = RhsBlasTraits::extract(prod.rhs());
222
+
223
+ Scalar actualAlpha = alpha * LhsBlasTraits::extractScalarFactor(prod.lhs().derived()) * RhsBlasTraits::extractScalarFactor(prod.rhs().derived());
224
+
225
+ if(!beta)
226
+ mat.template triangularView<UpLo>().setZero();
227
+
228
+ enum {
229
+ StorageOrder = (internal::traits<MatrixType>::Flags&RowMajorBit) ? RowMajor : ColMajor,
230
+ UseLhsDirectly = _ActualLhs::InnerStrideAtCompileTime==1,
231
+ UseRhsDirectly = _ActualRhs::InnerStrideAtCompileTime==1
232
+ };
233
+
234
+ internal::gemv_static_vector_if<Scalar,Lhs::SizeAtCompileTime,Lhs::MaxSizeAtCompileTime,!UseLhsDirectly> static_lhs;
235
+ ei_declare_aligned_stack_constructed_variable(Scalar, actualLhsPtr, actualLhs.size(),
236
+ (UseLhsDirectly ? const_cast<Scalar*>(actualLhs.data()) : static_lhs.data()));
237
+ if(!UseLhsDirectly) Map<typename _ActualLhs::PlainObject>(actualLhsPtr, actualLhs.size()) = actualLhs;
238
+
239
+ internal::gemv_static_vector_if<Scalar,Rhs::SizeAtCompileTime,Rhs::MaxSizeAtCompileTime,!UseRhsDirectly> static_rhs;
240
+ ei_declare_aligned_stack_constructed_variable(Scalar, actualRhsPtr, actualRhs.size(),
241
+ (UseRhsDirectly ? const_cast<Scalar*>(actualRhs.data()) : static_rhs.data()));
242
+ if(!UseRhsDirectly) Map<typename _ActualRhs::PlainObject>(actualRhsPtr, actualRhs.size()) = actualRhs;
243
+
244
+
245
+ selfadjoint_rank1_update<Scalar,Index,StorageOrder,UpLo,
246
+ LhsBlasTraits::NeedToConjugate && NumTraits<Scalar>::IsComplex,
247
+ RhsBlasTraits::NeedToConjugate && NumTraits<Scalar>::IsComplex>
248
+ ::run(actualLhs.size(), mat.data(), mat.outerStride(), actualLhsPtr, actualRhsPtr, actualAlpha);
249
+ }
250
+ };
251
+
252
+ template<typename MatrixType, typename ProductType, int UpLo>
253
+ struct general_product_to_triangular_selector<MatrixType,ProductType,UpLo,false>
254
+ {
255
+ static void run(MatrixType& mat, const ProductType& prod, const typename MatrixType::Scalar& alpha, bool beta)
256
+ {
257
+ typedef typename internal::remove_all<typename ProductType::LhsNested>::type Lhs;
258
+ typedef internal::blas_traits<Lhs> LhsBlasTraits;
259
+ typedef typename LhsBlasTraits::DirectLinearAccessType ActualLhs;
260
+ typedef typename internal::remove_all<ActualLhs>::type _ActualLhs;
261
+ typename internal::add_const_on_value_type<ActualLhs>::type actualLhs = LhsBlasTraits::extract(prod.lhs());
262
+
263
+ typedef typename internal::remove_all<typename ProductType::RhsNested>::type Rhs;
264
+ typedef internal::blas_traits<Rhs> RhsBlasTraits;
265
+ typedef typename RhsBlasTraits::DirectLinearAccessType ActualRhs;
266
+ typedef typename internal::remove_all<ActualRhs>::type _ActualRhs;
267
+ typename internal::add_const_on_value_type<ActualRhs>::type actualRhs = RhsBlasTraits::extract(prod.rhs());
268
+
269
+ typename ProductType::Scalar actualAlpha = alpha * LhsBlasTraits::extractScalarFactor(prod.lhs().derived()) * RhsBlasTraits::extractScalarFactor(prod.rhs().derived());
270
+
271
+ if(!beta)
272
+ mat.template triangularView<UpLo>().setZero();
273
+
274
+ enum {
275
+ IsRowMajor = (internal::traits<MatrixType>::Flags&RowMajorBit) ? 1 : 0,
276
+ LhsIsRowMajor = _ActualLhs::Flags&RowMajorBit ? 1 : 0,
277
+ RhsIsRowMajor = _ActualRhs::Flags&RowMajorBit ? 1 : 0,
278
+ SkipDiag = (UpLo&(UnitDiag|ZeroDiag))!=0
279
+ };
280
+
281
+ Index size = mat.cols();
282
+ if(SkipDiag)
283
+ size--;
284
+ Index depth = actualLhs.cols();
285
+
286
+ typedef internal::gemm_blocking_space<IsRowMajor ? RowMajor : ColMajor,typename Lhs::Scalar,typename Rhs::Scalar,
287
+ MatrixType::MaxColsAtCompileTime, MatrixType::MaxColsAtCompileTime, _ActualRhs::MaxColsAtCompileTime> BlockingType;
288
+
289
+ BlockingType blocking(size, size, depth, 1, false);
290
+
291
+ internal::general_matrix_matrix_triangular_product<Index,
292
+ typename Lhs::Scalar, LhsIsRowMajor ? RowMajor : ColMajor, LhsBlasTraits::NeedToConjugate,
293
+ typename Rhs::Scalar, RhsIsRowMajor ? RowMajor : ColMajor, RhsBlasTraits::NeedToConjugate,
294
+ IsRowMajor ? RowMajor : ColMajor, MatrixType::InnerStrideAtCompileTime, UpLo&(Lower|Upper)>
295
+ ::run(size, depth,
296
+ &actualLhs.coeffRef(SkipDiag&&(UpLo&Lower)==Lower ? 1 : 0,0), actualLhs.outerStride(),
297
+ &actualRhs.coeffRef(0,SkipDiag&&(UpLo&Upper)==Upper ? 1 : 0), actualRhs.outerStride(),
298
+ mat.data() + (SkipDiag ? (bool(IsRowMajor) != ((UpLo&Lower)==Lower) ? mat.innerStride() : mat.outerStride() ) : 0),
299
+ mat.innerStride(), mat.outerStride(), actualAlpha, blocking);
300
+ }
301
+ };
302
+
303
+ template<typename MatrixType, unsigned int UpLo>
304
+ template<typename ProductType>
305
+ EIGEN_DEVICE_FUNC TriangularView<MatrixType,UpLo>& TriangularViewImpl<MatrixType,UpLo,Dense>::_assignProduct(const ProductType& prod, const Scalar& alpha, bool beta)
306
+ {
307
+ EIGEN_STATIC_ASSERT((UpLo&UnitDiag)==0, WRITING_TO_TRIANGULAR_PART_WITH_UNIT_DIAGONAL_IS_NOT_SUPPORTED);
308
+ eigen_assert(derived().nestedExpression().rows() == prod.rows() && derived().cols() == prod.cols());
309
+
310
+ general_product_to_triangular_selector<MatrixType, ProductType, UpLo, internal::traits<ProductType>::InnerSize==1>::run(derived().nestedExpression().const_cast_derived(), prod, alpha, beta);
311
+
312
+ return derived();
313
+ }
314
+
315
+ } // end namespace Eigen
316
+
317
+ #endif // EIGEN_GENERAL_MATRIX_MATRIX_TRIANGULAR_H
@@ -0,0 +1,145 @@
1
+ /*
2
+ Copyright (c) 2011, Intel Corporation. All rights reserved.
3
+
4
+ Redistribution and use in source and binary forms, with or without modification,
5
+ are permitted provided that the following conditions are met:
6
+
7
+ * Redistributions of source code must retain the above copyright notice, this
8
+ list of conditions and the following disclaimer.
9
+ * Redistributions in binary form must reproduce the above copyright notice,
10
+ this list of conditions and the following disclaimer in the documentation
11
+ and/or other materials provided with the distribution.
12
+ * Neither the name of Intel Corporation nor the names of its contributors may
13
+ be used to endorse or promote products derived from this software without
14
+ specific prior written permission.
15
+
16
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
17
+ ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
18
+ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
19
+ DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
20
+ ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
21
+ (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
22
+ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
23
+ ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
24
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
25
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
26
+
27
+ ********************************************************************************
28
+ * Content : Eigen bindings to BLAS F77
29
+ * Level 3 BLAS SYRK/HERK implementation.
30
+ ********************************************************************************
31
+ */
32
+
33
+ #ifndef EIGEN_GENERAL_MATRIX_MATRIX_TRIANGULAR_BLAS_H
34
+ #define EIGEN_GENERAL_MATRIX_MATRIX_TRIANGULAR_BLAS_H
35
+
36
+ namespace Eigen {
37
+
38
+ namespace internal {
39
+
40
+ template <typename Index, typename Scalar, int AStorageOrder, bool ConjugateA, int ResStorageOrder, int UpLo>
41
+ struct general_matrix_matrix_rankupdate :
42
+ general_matrix_matrix_triangular_product<
43
+ Index,Scalar,AStorageOrder,ConjugateA,Scalar,AStorageOrder,ConjugateA,ResStorageOrder,1,UpLo,BuiltIn> {};
44
+
45
+
46
+ // try to go to BLAS specialization
47
+ #define EIGEN_BLAS_RANKUPDATE_SPECIALIZE(Scalar) \
48
+ template <typename Index, int LhsStorageOrder, bool ConjugateLhs, \
49
+ int RhsStorageOrder, bool ConjugateRhs, int UpLo> \
50
+ struct general_matrix_matrix_triangular_product<Index,Scalar,LhsStorageOrder,ConjugateLhs, \
51
+ Scalar,RhsStorageOrder,ConjugateRhs,ColMajor,1,UpLo,Specialized> { \
52
+ static EIGEN_STRONG_INLINE void run(Index size, Index depth,const Scalar* lhs, Index lhsStride, \
53
+ const Scalar* rhs, Index rhsStride, Scalar* res, Index resIncr, Index resStride, Scalar alpha, level3_blocking<Scalar, Scalar>& blocking) \
54
+ { \
55
+ if ( lhs==rhs && ((UpLo&(Lower|Upper))==UpLo) ) { \
56
+ general_matrix_matrix_rankupdate<Index,Scalar,LhsStorageOrder,ConjugateLhs,ColMajor,UpLo> \
57
+ ::run(size,depth,lhs,lhsStride,rhs,rhsStride,res,resStride,alpha,blocking); \
58
+ } else { \
59
+ general_matrix_matrix_triangular_product<Index, \
60
+ Scalar, LhsStorageOrder, ConjugateLhs, \
61
+ Scalar, RhsStorageOrder, ConjugateRhs, \
62
+ ColMajor, 1, UpLo, BuiltIn> \
63
+ ::run(size,depth,lhs,lhsStride,rhs,rhsStride,res,resIncr,resStride,alpha,blocking); \
64
+ } \
65
+ } \
66
+ };
67
+
68
+ EIGEN_BLAS_RANKUPDATE_SPECIALIZE(double)
69
+ EIGEN_BLAS_RANKUPDATE_SPECIALIZE(float)
70
+ // TODO handle complex cases
71
+ // EIGEN_BLAS_RANKUPDATE_SPECIALIZE(dcomplex)
72
+ // EIGEN_BLAS_RANKUPDATE_SPECIALIZE(scomplex)
73
+
74
+ // SYRK for float/double
75
+ #define EIGEN_BLAS_RANKUPDATE_R(EIGTYPE, BLASTYPE, BLASFUNC) \
76
+ template <typename Index, int AStorageOrder, bool ConjugateA, int UpLo> \
77
+ struct general_matrix_matrix_rankupdate<Index,EIGTYPE,AStorageOrder,ConjugateA,ColMajor,UpLo> { \
78
+ enum { \
79
+ IsLower = (UpLo&Lower) == Lower, \
80
+ LowUp = IsLower ? Lower : Upper, \
81
+ conjA = ((AStorageOrder==ColMajor) && ConjugateA) ? 1 : 0 \
82
+ }; \
83
+ static EIGEN_STRONG_INLINE void run(Index size, Index depth,const EIGTYPE* lhs, Index lhsStride, \
84
+ const EIGTYPE* /*rhs*/, Index /*rhsStride*/, EIGTYPE* res, Index resStride, EIGTYPE alpha, level3_blocking<EIGTYPE, EIGTYPE>& /*blocking*/) \
85
+ { \
86
+ /* typedef Matrix<EIGTYPE, Dynamic, Dynamic, RhsStorageOrder> MatrixRhs;*/ \
87
+ \
88
+ BlasIndex lda=convert_index<BlasIndex>(lhsStride), ldc=convert_index<BlasIndex>(resStride), n=convert_index<BlasIndex>(size), k=convert_index<BlasIndex>(depth); \
89
+ char uplo=((IsLower) ? 'L' : 'U'), trans=((AStorageOrder==RowMajor) ? 'T':'N'); \
90
+ EIGTYPE beta(1); \
91
+ BLASFUNC(&uplo, &trans, &n, &k, (const BLASTYPE*)&numext::real_ref(alpha), lhs, &lda, (const BLASTYPE*)&numext::real_ref(beta), res, &ldc); \
92
+ } \
93
+ };
94
+
95
+ // HERK for complex data
96
+ #define EIGEN_BLAS_RANKUPDATE_C(EIGTYPE, BLASTYPE, RTYPE, BLASFUNC) \
97
+ template <typename Index, int AStorageOrder, bool ConjugateA, int UpLo> \
98
+ struct general_matrix_matrix_rankupdate<Index,EIGTYPE,AStorageOrder,ConjugateA,ColMajor,UpLo> { \
99
+ enum { \
100
+ IsLower = (UpLo&Lower) == Lower, \
101
+ LowUp = IsLower ? Lower : Upper, \
102
+ conjA = (((AStorageOrder==ColMajor) && ConjugateA) || ((AStorageOrder==RowMajor) && !ConjugateA)) ? 1 : 0 \
103
+ }; \
104
+ static EIGEN_STRONG_INLINE void run(Index size, Index depth,const EIGTYPE* lhs, Index lhsStride, \
105
+ const EIGTYPE* /*rhs*/, Index /*rhsStride*/, EIGTYPE* res, Index resStride, EIGTYPE alpha, level3_blocking<EIGTYPE, EIGTYPE>& /*blocking*/) \
106
+ { \
107
+ typedef Matrix<EIGTYPE, Dynamic, Dynamic, AStorageOrder> MatrixType; \
108
+ \
109
+ BlasIndex lda=convert_index<BlasIndex>(lhsStride), ldc=convert_index<BlasIndex>(resStride), n=convert_index<BlasIndex>(size), k=convert_index<BlasIndex>(depth); \
110
+ char uplo=((IsLower) ? 'L' : 'U'), trans=((AStorageOrder==RowMajor) ? 'C':'N'); \
111
+ RTYPE alpha_, beta_; \
112
+ const EIGTYPE* a_ptr; \
113
+ \
114
+ alpha_ = alpha.real(); \
115
+ beta_ = 1.0; \
116
+ /* Copy with conjugation in some cases*/ \
117
+ MatrixType a; \
118
+ if (conjA) { \
119
+ Map<const MatrixType, 0, OuterStride<> > mapA(lhs,n,k,OuterStride<>(lhsStride)); \
120
+ a = mapA.conjugate(); \
121
+ lda = a.outerStride(); \
122
+ a_ptr = a.data(); \
123
+ } else a_ptr=lhs; \
124
+ BLASFUNC(&uplo, &trans, &n, &k, &alpha_, (BLASTYPE*)a_ptr, &lda, &beta_, (BLASTYPE*)res, &ldc); \
125
+ } \
126
+ };
127
+
128
+ #ifdef EIGEN_USE_MKL
129
+ EIGEN_BLAS_RANKUPDATE_R(double, double, dsyrk)
130
+ EIGEN_BLAS_RANKUPDATE_R(float, float, ssyrk)
131
+ #else
132
+ EIGEN_BLAS_RANKUPDATE_R(double, double, dsyrk_)
133
+ EIGEN_BLAS_RANKUPDATE_R(float, float, ssyrk_)
134
+ #endif
135
+
136
+ // TODO hanlde complex cases
137
+ // EIGEN_BLAS_RANKUPDATE_C(dcomplex, double, double, zherk_)
138
+ // EIGEN_BLAS_RANKUPDATE_C(scomplex, float, float, cherk_)
139
+
140
+
141
+ } // end namespace internal
142
+
143
+ } // end namespace Eigen
144
+
145
+ #endif // EIGEN_GENERAL_MATRIX_MATRIX_TRIANGULAR_BLAS_H
@@ -0,0 +1,124 @@
1
+ /*
2
+ Copyright (c) 2011, Intel Corporation. All rights reserved.
3
+
4
+ Redistribution and use in source and binary forms, with or without modification,
5
+ are permitted provided that the following conditions are met:
6
+
7
+ * Redistributions of source code must retain the above copyright notice, this
8
+ list of conditions and the following disclaimer.
9
+ * Redistributions in binary form must reproduce the above copyright notice,
10
+ this list of conditions and the following disclaimer in the documentation
11
+ and/or other materials provided with the distribution.
12
+ * Neither the name of Intel Corporation nor the names of its contributors may
13
+ be used to endorse or promote products derived from this software without
14
+ specific prior written permission.
15
+
16
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
17
+ ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
18
+ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
19
+ DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
20
+ ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
21
+ (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
22
+ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
23
+ ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
24
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
25
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
26
+
27
+ ********************************************************************************
28
+ * Content : Eigen bindings to BLAS F77
29
+ * General matrix-matrix product functionality based on ?GEMM.
30
+ ********************************************************************************
31
+ */
32
+
33
+ #ifndef EIGEN_GENERAL_MATRIX_MATRIX_BLAS_H
34
+ #define EIGEN_GENERAL_MATRIX_MATRIX_BLAS_H
35
+
36
+ namespace Eigen {
37
+
38
+ namespace internal {
39
+
40
+ /**********************************************************************
41
+ * This file implements general matrix-matrix multiplication using BLAS
42
+ * gemm function via partial specialization of
43
+ * general_matrix_matrix_product::run(..) method for float, double,
44
+ * std::complex<float> and std::complex<double> types
45
+ **********************************************************************/
46
+
47
+ // gemm specialization
48
+
49
+ #define GEMM_SPECIALIZATION(EIGTYPE, EIGPREFIX, BLASTYPE, BLASFUNC) \
50
+ template< \
51
+ typename Index, \
52
+ int LhsStorageOrder, bool ConjugateLhs, \
53
+ int RhsStorageOrder, bool ConjugateRhs> \
54
+ struct general_matrix_matrix_product<Index,EIGTYPE,LhsStorageOrder,ConjugateLhs,EIGTYPE,RhsStorageOrder,ConjugateRhs,ColMajor,1> \
55
+ { \
56
+ typedef gebp_traits<EIGTYPE,EIGTYPE> Traits; \
57
+ \
58
+ static void run(Index rows, Index cols, Index depth, \
59
+ const EIGTYPE* _lhs, Index lhsStride, \
60
+ const EIGTYPE* _rhs, Index rhsStride, \
61
+ EIGTYPE* res, Index resIncr, Index resStride, \
62
+ EIGTYPE alpha, \
63
+ level3_blocking<EIGTYPE, EIGTYPE>& /*blocking*/, \
64
+ GemmParallelInfo<Index>* /*info = 0*/) \
65
+ { \
66
+ using std::conj; \
67
+ \
68
+ EIGEN_ONLY_USED_FOR_DEBUG(resIncr); \
69
+ eigen_assert(resIncr == 1); \
70
+ char transa, transb; \
71
+ BlasIndex m, n, k, lda, ldb, ldc; \
72
+ const EIGTYPE *a, *b; \
73
+ EIGTYPE beta(1); \
74
+ MatrixX##EIGPREFIX a_tmp, b_tmp; \
75
+ \
76
+ /* Set transpose options */ \
77
+ transa = (LhsStorageOrder==RowMajor) ? ((ConjugateLhs) ? 'C' : 'T') : 'N'; \
78
+ transb = (RhsStorageOrder==RowMajor) ? ((ConjugateRhs) ? 'C' : 'T') : 'N'; \
79
+ \
80
+ /* Set m, n, k */ \
81
+ m = convert_index<BlasIndex>(rows); \
82
+ n = convert_index<BlasIndex>(cols); \
83
+ k = convert_index<BlasIndex>(depth); \
84
+ \
85
+ /* Set lda, ldb, ldc */ \
86
+ lda = convert_index<BlasIndex>(lhsStride); \
87
+ ldb = convert_index<BlasIndex>(rhsStride); \
88
+ ldc = convert_index<BlasIndex>(resStride); \
89
+ \
90
+ /* Set a, b, c */ \
91
+ if ((LhsStorageOrder==ColMajor) && (ConjugateLhs)) { \
92
+ Map<const MatrixX##EIGPREFIX, 0, OuterStride<> > lhs(_lhs,m,k,OuterStride<>(lhsStride)); \
93
+ a_tmp = lhs.conjugate(); \
94
+ a = a_tmp.data(); \
95
+ lda = convert_index<BlasIndex>(a_tmp.outerStride()); \
96
+ } else a = _lhs; \
97
+ \
98
+ if ((RhsStorageOrder==ColMajor) && (ConjugateRhs)) { \
99
+ Map<const MatrixX##EIGPREFIX, 0, OuterStride<> > rhs(_rhs,k,n,OuterStride<>(rhsStride)); \
100
+ b_tmp = rhs.conjugate(); \
101
+ b = b_tmp.data(); \
102
+ ldb = convert_index<BlasIndex>(b_tmp.outerStride()); \
103
+ } else b = _rhs; \
104
+ \
105
+ BLASFUNC(&transa, &transb, &m, &n, &k, (const BLASTYPE*)&numext::real_ref(alpha), (const BLASTYPE*)a, &lda, (const BLASTYPE*)b, &ldb, (const BLASTYPE*)&numext::real_ref(beta), (BLASTYPE*)res, &ldc); \
106
+ }};
107
+
108
+ #ifdef EIGEN_USE_MKL
109
+ GEMM_SPECIALIZATION(double, d, double, dgemm)
110
+ GEMM_SPECIALIZATION(float, f, float, sgemm)
111
+ GEMM_SPECIALIZATION(dcomplex, cd, MKL_Complex16, zgemm)
112
+ GEMM_SPECIALIZATION(scomplex, cf, MKL_Complex8, cgemm)
113
+ #else
114
+ GEMM_SPECIALIZATION(double, d, double, dgemm_)
115
+ GEMM_SPECIALIZATION(float, f, float, sgemm_)
116
+ GEMM_SPECIALIZATION(dcomplex, cd, double, zgemm_)
117
+ GEMM_SPECIALIZATION(scomplex, cf, float, cgemm_)
118
+ #endif
119
+
120
+ } // end namespase internal
121
+
122
+ } // end namespace Eigen
123
+
124
+ #endif // EIGEN_GENERAL_MATRIX_MATRIX_BLAS_H