umappp 0.1.2

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Files changed (395) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +25 -0
  3. data/README.md +110 -0
  4. data/ext/umappp/extconf.rb +25 -0
  5. data/ext/umappp/numo.hpp +867 -0
  6. data/ext/umappp/umappp.cpp +225 -0
  7. data/lib/umappp/version.rb +5 -0
  8. data/lib/umappp.rb +41 -0
  9. data/vendor/Eigen/Cholesky +45 -0
  10. data/vendor/Eigen/CholmodSupport +48 -0
  11. data/vendor/Eigen/Core +384 -0
  12. data/vendor/Eigen/Dense +7 -0
  13. data/vendor/Eigen/Eigen +2 -0
  14. data/vendor/Eigen/Eigenvalues +60 -0
  15. data/vendor/Eigen/Geometry +59 -0
  16. data/vendor/Eigen/Householder +29 -0
  17. data/vendor/Eigen/IterativeLinearSolvers +48 -0
  18. data/vendor/Eigen/Jacobi +32 -0
  19. data/vendor/Eigen/KLUSupport +41 -0
  20. data/vendor/Eigen/LU +47 -0
  21. data/vendor/Eigen/MetisSupport +35 -0
  22. data/vendor/Eigen/OrderingMethods +70 -0
  23. data/vendor/Eigen/PaStiXSupport +49 -0
  24. data/vendor/Eigen/PardisoSupport +35 -0
  25. data/vendor/Eigen/QR +50 -0
  26. data/vendor/Eigen/QtAlignedMalloc +39 -0
  27. data/vendor/Eigen/SPQRSupport +34 -0
  28. data/vendor/Eigen/SVD +50 -0
  29. data/vendor/Eigen/Sparse +34 -0
  30. data/vendor/Eigen/SparseCholesky +37 -0
  31. data/vendor/Eigen/SparseCore +69 -0
  32. data/vendor/Eigen/SparseLU +50 -0
  33. data/vendor/Eigen/SparseQR +36 -0
  34. data/vendor/Eigen/StdDeque +27 -0
  35. data/vendor/Eigen/StdList +26 -0
  36. data/vendor/Eigen/StdVector +27 -0
  37. data/vendor/Eigen/SuperLUSupport +64 -0
  38. data/vendor/Eigen/UmfPackSupport +40 -0
  39. data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
  40. data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
  41. data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  42. data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
  43. data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
  44. data/vendor/Eigen/src/Core/Array.h +417 -0
  45. data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
  46. data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
  47. data/vendor/Eigen/src/Core/Assign.h +90 -0
  48. data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
  49. data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
  50. data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
  51. data/vendor/Eigen/src/Core/Block.h +448 -0
  52. data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
  53. data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
  54. data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
  55. data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
  56. data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
  57. data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
  58. data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
  59. data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  60. data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  61. data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
  62. data/vendor/Eigen/src/Core/DenseBase.h +701 -0
  63. data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
  64. data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
  65. data/vendor/Eigen/src/Core/Diagonal.h +258 -0
  66. data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
  67. data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
  68. data/vendor/Eigen/src/Core/Dot.h +318 -0
  69. data/vendor/Eigen/src/Core/EigenBase.h +160 -0
  70. data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
  71. data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
  72. data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
  73. data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
  74. data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
  75. data/vendor/Eigen/src/Core/IO.h +258 -0
  76. data/vendor/Eigen/src/Core/IndexedView.h +237 -0
  77. data/vendor/Eigen/src/Core/Inverse.h +117 -0
  78. data/vendor/Eigen/src/Core/Map.h +171 -0
  79. data/vendor/Eigen/src/Core/MapBase.h +310 -0
  80. data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
  81. data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
  82. data/vendor/Eigen/src/Core/Matrix.h +565 -0
  83. data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
  84. data/vendor/Eigen/src/Core/NestByValue.h +85 -0
  85. data/vendor/Eigen/src/Core/NoAlias.h +109 -0
  86. data/vendor/Eigen/src/Core/NumTraits.h +335 -0
  87. data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  88. data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
  89. data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
  90. data/vendor/Eigen/src/Core/Product.h +191 -0
  91. data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
  92. data/vendor/Eigen/src/Core/Random.h +218 -0
  93. data/vendor/Eigen/src/Core/Redux.h +515 -0
  94. data/vendor/Eigen/src/Core/Ref.h +381 -0
  95. data/vendor/Eigen/src/Core/Replicate.h +142 -0
  96. data/vendor/Eigen/src/Core/Reshaped.h +454 -0
  97. data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
  98. data/vendor/Eigen/src/Core/Reverse.h +217 -0
  99. data/vendor/Eigen/src/Core/Select.h +164 -0
  100. data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
  101. data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  102. data/vendor/Eigen/src/Core/Solve.h +188 -0
  103. data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
  104. data/vendor/Eigen/src/Core/SolverBase.h +168 -0
  105. data/vendor/Eigen/src/Core/StableNorm.h +251 -0
  106. data/vendor/Eigen/src/Core/StlIterators.h +463 -0
  107. data/vendor/Eigen/src/Core/Stride.h +116 -0
  108. data/vendor/Eigen/src/Core/Swap.h +68 -0
  109. data/vendor/Eigen/src/Core/Transpose.h +464 -0
  110. data/vendor/Eigen/src/Core/Transpositions.h +386 -0
  111. data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
  112. data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
  113. data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
  114. data/vendor/Eigen/src/Core/Visitor.h +381 -0
  115. data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
  116. data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
  117. data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
  118. data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
  119. data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  120. data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
  121. data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
  122. data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  123. data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
  124. data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
  125. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  126. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  127. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  128. data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
  129. data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
  130. data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  131. data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
  132. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  133. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  134. data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
  135. data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
  136. data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  137. data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
  138. data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  139. data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  140. data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  141. data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  142. data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  143. data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  144. data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
  145. data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  146. data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
  147. data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
  148. data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  149. data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
  150. data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
  151. data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
  152. data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
  153. data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  154. data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  155. data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  156. data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  157. data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  158. data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  159. data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  160. data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  161. data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
  162. data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
  163. data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
  164. data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
  165. data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
  166. data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
  167. data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
  168. data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  169. data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
  170. data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
  171. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
  172. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
  173. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  174. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
  175. data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
  176. data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  177. data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
  178. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
  179. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
  180. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
  181. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  182. data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  183. data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
  184. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
  185. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
  186. data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  187. data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  188. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
  189. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
  190. data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
  191. data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
  192. data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  193. data/vendor/Eigen/src/Core/util/Constants.h +563 -0
  194. data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
  195. data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
  196. data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  197. data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
  198. data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
  199. data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
  200. data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
  201. data/vendor/Eigen/src/Core/util/Meta.h +812 -0
  202. data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
  203. data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
  204. data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  205. data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
  206. data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  207. data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
  208. data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  209. data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
  210. data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  211. data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  212. data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  213. data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  214. data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  215. data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  216. data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
  217. data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
  218. data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  219. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
  220. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  221. data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
  222. data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
  223. data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
  224. data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
  225. data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
  226. data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
  227. data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
  228. data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
  229. data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
  230. data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
  231. data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
  232. data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
  233. data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
  234. data/vendor/Eigen/src/Geometry/Translation.h +202 -0
  235. data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
  236. data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  237. data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
  238. data/vendor/Eigen/src/Householder/Householder.h +176 -0
  239. data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
  240. data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  241. data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
  242. data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
  243. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
  244. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
  245. data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
  246. data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
  247. data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
  248. data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
  249. data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  250. data/vendor/Eigen/src/LU/Determinant.h +117 -0
  251. data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
  252. data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
  253. data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
  254. data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  255. data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
  256. data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  257. data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
  258. data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
  259. data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
  260. data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  261. data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
  262. data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
  263. data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  264. data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
  265. data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
  266. data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
  267. data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  268. data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
  269. data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
  270. data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
  271. data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  272. data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
  273. data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  274. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
  275. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
  276. data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
  277. data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
  278. data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  279. data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  280. data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
  281. data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
  282. data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  283. data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
  284. data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
  285. data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
  286. data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
  287. data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  288. data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
  289. data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  290. data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
  291. data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
  292. data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
  293. data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  294. data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
  295. data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
  296. data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
  297. data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
  298. data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  299. data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  300. data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  301. data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  302. data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
  303. data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
  304. data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
  305. data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  306. data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
  307. data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  308. data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  309. data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  310. data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
  311. data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  312. data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  313. data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  314. data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  315. data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  316. data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  317. data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  318. data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  319. data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  320. data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  321. data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  322. data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  323. data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
  324. data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
  325. data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
  326. data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
  327. data/vendor/Eigen/src/StlSupport/details.h +84 -0
  328. data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
  329. data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
  330. data/vendor/Eigen/src/misc/Image.h +82 -0
  331. data/vendor/Eigen/src/misc/Kernel.h +79 -0
  332. data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
  333. data/vendor/Eigen/src/misc/blas.h +440 -0
  334. data/vendor/Eigen/src/misc/lapack.h +152 -0
  335. data/vendor/Eigen/src/misc/lapacke.h +16292 -0
  336. data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
  337. data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
  338. data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
  339. data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
  340. data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  341. data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
  342. data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  343. data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  344. data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
  345. data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
  346. data/vendor/aarand/aarand.hpp +114 -0
  347. data/vendor/annoy/annoylib.h +1495 -0
  348. data/vendor/annoy/kissrandom.h +120 -0
  349. data/vendor/annoy/mman.h +242 -0
  350. data/vendor/hnswlib/bruteforce.h +152 -0
  351. data/vendor/hnswlib/hnswalg.h +1192 -0
  352. data/vendor/hnswlib/hnswlib.h +108 -0
  353. data/vendor/hnswlib/space_ip.h +282 -0
  354. data/vendor/hnswlib/space_l2.h +281 -0
  355. data/vendor/hnswlib/visited_list_pool.h +79 -0
  356. data/vendor/irlba/irlba.hpp +575 -0
  357. data/vendor/irlba/lanczos.hpp +212 -0
  358. data/vendor/irlba/parallel.hpp +474 -0
  359. data/vendor/irlba/utils.hpp +224 -0
  360. data/vendor/irlba/wrappers.hpp +228 -0
  361. data/vendor/kmeans/Base.hpp +75 -0
  362. data/vendor/kmeans/Details.hpp +79 -0
  363. data/vendor/kmeans/HartiganWong.hpp +492 -0
  364. data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
  365. data/vendor/kmeans/InitializeNone.hpp +44 -0
  366. data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
  367. data/vendor/kmeans/InitializeRandom.hpp +91 -0
  368. data/vendor/kmeans/Kmeans.hpp +161 -0
  369. data/vendor/kmeans/Lloyd.hpp +134 -0
  370. data/vendor/kmeans/MiniBatch.hpp +269 -0
  371. data/vendor/kmeans/QuickSearch.hpp +179 -0
  372. data/vendor/kmeans/compute_centroids.hpp +32 -0
  373. data/vendor/kmeans/compute_wcss.hpp +27 -0
  374. data/vendor/kmeans/is_edge_case.hpp +42 -0
  375. data/vendor/kmeans/random.hpp +55 -0
  376. data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
  377. data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
  378. data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
  379. data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
  380. data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
  381. data/vendor/knncolle/knncolle.hpp +34 -0
  382. data/vendor/knncolle/utils/Base.hpp +100 -0
  383. data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
  384. data/vendor/knncolle/utils/distances.hpp +98 -0
  385. data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
  386. data/vendor/powerit/PowerIterations.hpp +157 -0
  387. data/vendor/umappp/NeighborList.hpp +37 -0
  388. data/vendor/umappp/Umap.hpp +662 -0
  389. data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
  390. data/vendor/umappp/find_ab.hpp +157 -0
  391. data/vendor/umappp/neighbor_similarities.hpp +136 -0
  392. data/vendor/umappp/optimize_layout.hpp +285 -0
  393. data/vendor/umappp/spectral_init.hpp +181 -0
  394. data/vendor/umappp/umappp.hpp +13 -0
  395. metadata +465 -0
@@ -0,0 +1,877 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
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+ //
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+ // Copyright (C) 2006-2009 Benoit Jacob <jacob.benoit.1@gmail.com>
5
+ //
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+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_LU_H
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+ #define EIGEN_LU_H
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+
13
+ namespace Eigen {
14
+
15
+ namespace internal {
16
+ template<typename _MatrixType> struct traits<FullPivLU<_MatrixType> >
17
+ : traits<_MatrixType>
18
+ {
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+ typedef MatrixXpr XprKind;
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+ typedef SolverStorage StorageKind;
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+ typedef int StorageIndex;
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+ enum { Flags = 0 };
23
+ };
24
+
25
+ } // end namespace internal
26
+
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+ /** \ingroup LU_Module
28
+ *
29
+ * \class FullPivLU
30
+ *
31
+ * \brief LU decomposition of a matrix with complete pivoting, and related features
32
+ *
33
+ * \tparam _MatrixType the type of the matrix of which we are computing the LU decomposition
34
+ *
35
+ * This class represents a LU decomposition of any matrix, with complete pivoting: the matrix A is
36
+ * decomposed as \f$ A = P^{-1} L U Q^{-1} \f$ where L is unit-lower-triangular, U is
37
+ * upper-triangular, and P and Q are permutation matrices. This is a rank-revealing LU
38
+ * decomposition. The eigenvalues (diagonal coefficients) of U are sorted in such a way that any
39
+ * zeros are at the end.
40
+ *
41
+ * This decomposition provides the generic approach to solving systems of linear equations, computing
42
+ * the rank, invertibility, inverse, kernel, and determinant.
43
+ *
44
+ * This LU decomposition is very stable and well tested with large matrices. However there are use cases where the SVD
45
+ * decomposition is inherently more stable and/or flexible. For example, when computing the kernel of a matrix,
46
+ * working with the SVD allows to select the smallest singular values of the matrix, something that
47
+ * the LU decomposition doesn't see.
48
+ *
49
+ * The data of the LU decomposition can be directly accessed through the methods matrixLU(),
50
+ * permutationP(), permutationQ().
51
+ *
52
+ * As an example, here is how the original matrix can be retrieved:
53
+ * \include class_FullPivLU.cpp
54
+ * Output: \verbinclude class_FullPivLU.out
55
+ *
56
+ * This class supports the \link InplaceDecomposition inplace decomposition \endlink mechanism.
57
+ *
58
+ * \sa MatrixBase::fullPivLu(), MatrixBase::determinant(), MatrixBase::inverse()
59
+ */
60
+ template<typename _MatrixType> class FullPivLU
61
+ : public SolverBase<FullPivLU<_MatrixType> >
62
+ {
63
+ public:
64
+ typedef _MatrixType MatrixType;
65
+ typedef SolverBase<FullPivLU> Base;
66
+ friend class SolverBase<FullPivLU>;
67
+
68
+ EIGEN_GENERIC_PUBLIC_INTERFACE(FullPivLU)
69
+ enum {
70
+ MaxRowsAtCompileTime = MatrixType::MaxRowsAtCompileTime,
71
+ MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime
72
+ };
73
+ typedef typename internal::plain_row_type<MatrixType, StorageIndex>::type IntRowVectorType;
74
+ typedef typename internal::plain_col_type<MatrixType, StorageIndex>::type IntColVectorType;
75
+ typedef PermutationMatrix<ColsAtCompileTime, MaxColsAtCompileTime> PermutationQType;
76
+ typedef PermutationMatrix<RowsAtCompileTime, MaxRowsAtCompileTime> PermutationPType;
77
+ typedef typename MatrixType::PlainObject PlainObject;
78
+
79
+ /**
80
+ * \brief Default Constructor.
81
+ *
82
+ * The default constructor is useful in cases in which the user intends to
83
+ * perform decompositions via LU::compute(const MatrixType&).
84
+ */
85
+ FullPivLU();
86
+
87
+ /** \brief Default Constructor with memory preallocation
88
+ *
89
+ * Like the default constructor but with preallocation of the internal data
90
+ * according to the specified problem \a size.
91
+ * \sa FullPivLU()
92
+ */
93
+ FullPivLU(Index rows, Index cols);
94
+
95
+ /** Constructor.
96
+ *
97
+ * \param matrix the matrix of which to compute the LU decomposition.
98
+ * It is required to be nonzero.
99
+ */
100
+ template<typename InputType>
101
+ explicit FullPivLU(const EigenBase<InputType>& matrix);
102
+
103
+ /** \brief Constructs a LU factorization from a given matrix
104
+ *
105
+ * This overloaded constructor is provided for \link InplaceDecomposition inplace decomposition \endlink when \c MatrixType is a Eigen::Ref.
106
+ *
107
+ * \sa FullPivLU(const EigenBase&)
108
+ */
109
+ template<typename InputType>
110
+ explicit FullPivLU(EigenBase<InputType>& matrix);
111
+
112
+ /** Computes the LU decomposition of the given matrix.
113
+ *
114
+ * \param matrix the matrix of which to compute the LU decomposition.
115
+ * It is required to be nonzero.
116
+ *
117
+ * \returns a reference to *this
118
+ */
119
+ template<typename InputType>
120
+ FullPivLU& compute(const EigenBase<InputType>& matrix) {
121
+ m_lu = matrix.derived();
122
+ computeInPlace();
123
+ return *this;
124
+ }
125
+
126
+ /** \returns the LU decomposition matrix: the upper-triangular part is U, the
127
+ * unit-lower-triangular part is L (at least for square matrices; in the non-square
128
+ * case, special care is needed, see the documentation of class FullPivLU).
129
+ *
130
+ * \sa matrixL(), matrixU()
131
+ */
132
+ inline const MatrixType& matrixLU() const
133
+ {
134
+ eigen_assert(m_isInitialized && "LU is not initialized.");
135
+ return m_lu;
136
+ }
137
+
138
+ /** \returns the number of nonzero pivots in the LU decomposition.
139
+ * Here nonzero is meant in the exact sense, not in a fuzzy sense.
140
+ * So that notion isn't really intrinsically interesting, but it is
141
+ * still useful when implementing algorithms.
142
+ *
143
+ * \sa rank()
144
+ */
145
+ inline Index nonzeroPivots() const
146
+ {
147
+ eigen_assert(m_isInitialized && "LU is not initialized.");
148
+ return m_nonzero_pivots;
149
+ }
150
+
151
+ /** \returns the absolute value of the biggest pivot, i.e. the biggest
152
+ * diagonal coefficient of U.
153
+ */
154
+ RealScalar maxPivot() const { return m_maxpivot; }
155
+
156
+ /** \returns the permutation matrix P
157
+ *
158
+ * \sa permutationQ()
159
+ */
160
+ EIGEN_DEVICE_FUNC inline const PermutationPType& permutationP() const
161
+ {
162
+ eigen_assert(m_isInitialized && "LU is not initialized.");
163
+ return m_p;
164
+ }
165
+
166
+ /** \returns the permutation matrix Q
167
+ *
168
+ * \sa permutationP()
169
+ */
170
+ inline const PermutationQType& permutationQ() const
171
+ {
172
+ eigen_assert(m_isInitialized && "LU is not initialized.");
173
+ return m_q;
174
+ }
175
+
176
+ /** \returns the kernel of the matrix, also called its null-space. The columns of the returned matrix
177
+ * will form a basis of the kernel.
178
+ *
179
+ * \note If the kernel has dimension zero, then the returned matrix is a column-vector filled with zeros.
180
+ *
181
+ * \note This method has to determine which pivots should be considered nonzero.
182
+ * For that, it uses the threshold value that you can control by calling
183
+ * setThreshold(const RealScalar&).
184
+ *
185
+ * Example: \include FullPivLU_kernel.cpp
186
+ * Output: \verbinclude FullPivLU_kernel.out
187
+ *
188
+ * \sa image()
189
+ */
190
+ inline const internal::kernel_retval<FullPivLU> kernel() const
191
+ {
192
+ eigen_assert(m_isInitialized && "LU is not initialized.");
193
+ return internal::kernel_retval<FullPivLU>(*this);
194
+ }
195
+
196
+ /** \returns the image of the matrix, also called its column-space. The columns of the returned matrix
197
+ * will form a basis of the image (column-space).
198
+ *
199
+ * \param originalMatrix the original matrix, of which *this is the LU decomposition.
200
+ * The reason why it is needed to pass it here, is that this allows
201
+ * a large optimization, as otherwise this method would need to reconstruct it
202
+ * from the LU decomposition.
203
+ *
204
+ * \note If the image has dimension zero, then the returned matrix is a column-vector filled with zeros.
205
+ *
206
+ * \note This method has to determine which pivots should be considered nonzero.
207
+ * For that, it uses the threshold value that you can control by calling
208
+ * setThreshold(const RealScalar&).
209
+ *
210
+ * Example: \include FullPivLU_image.cpp
211
+ * Output: \verbinclude FullPivLU_image.out
212
+ *
213
+ * \sa kernel()
214
+ */
215
+ inline const internal::image_retval<FullPivLU>
216
+ image(const MatrixType& originalMatrix) const
217
+ {
218
+ eigen_assert(m_isInitialized && "LU is not initialized.");
219
+ return internal::image_retval<FullPivLU>(*this, originalMatrix);
220
+ }
221
+
222
+ #ifdef EIGEN_PARSED_BY_DOXYGEN
223
+ /** \return a solution x to the equation Ax=b, where A is the matrix of which
224
+ * *this is the LU decomposition.
225
+ *
226
+ * \param b the right-hand-side of the equation to solve. Can be a vector or a matrix,
227
+ * the only requirement in order for the equation to make sense is that
228
+ * b.rows()==A.rows(), where A is the matrix of which *this is the LU decomposition.
229
+ *
230
+ * \returns a solution.
231
+ *
232
+ * \note_about_checking_solutions
233
+ *
234
+ * \note_about_arbitrary_choice_of_solution
235
+ * \note_about_using_kernel_to_study_multiple_solutions
236
+ *
237
+ * Example: \include FullPivLU_solve.cpp
238
+ * Output: \verbinclude FullPivLU_solve.out
239
+ *
240
+ * \sa TriangularView::solve(), kernel(), inverse()
241
+ */
242
+ template<typename Rhs>
243
+ inline const Solve<FullPivLU, Rhs>
244
+ solve(const MatrixBase<Rhs>& b) const;
245
+ #endif
246
+
247
+ /** \returns an estimate of the reciprocal condition number of the matrix of which \c *this is
248
+ the LU decomposition.
249
+ */
250
+ inline RealScalar rcond() const
251
+ {
252
+ eigen_assert(m_isInitialized && "PartialPivLU is not initialized.");
253
+ return internal::rcond_estimate_helper(m_l1_norm, *this);
254
+ }
255
+
256
+ /** \returns the determinant of the matrix of which
257
+ * *this is the LU decomposition. It has only linear complexity
258
+ * (that is, O(n) where n is the dimension of the square matrix)
259
+ * as the LU decomposition has already been computed.
260
+ *
261
+ * \note This is only for square matrices.
262
+ *
263
+ * \note For fixed-size matrices of size up to 4, MatrixBase::determinant() offers
264
+ * optimized paths.
265
+ *
266
+ * \warning a determinant can be very big or small, so for matrices
267
+ * of large enough dimension, there is a risk of overflow/underflow.
268
+ *
269
+ * \sa MatrixBase::determinant()
270
+ */
271
+ typename internal::traits<MatrixType>::Scalar determinant() const;
272
+
273
+ /** Allows to prescribe a threshold to be used by certain methods, such as rank(),
274
+ * who need to determine when pivots are to be considered nonzero. This is not used for the
275
+ * LU decomposition itself.
276
+ *
277
+ * When it needs to get the threshold value, Eigen calls threshold(). By default, this
278
+ * uses a formula to automatically determine a reasonable threshold.
279
+ * Once you have called the present method setThreshold(const RealScalar&),
280
+ * your value is used instead.
281
+ *
282
+ * \param threshold The new value to use as the threshold.
283
+ *
284
+ * A pivot will be considered nonzero if its absolute value is strictly greater than
285
+ * \f$ \vert pivot \vert \leqslant threshold \times \vert maxpivot \vert \f$
286
+ * where maxpivot is the biggest pivot.
287
+ *
288
+ * If you want to come back to the default behavior, call setThreshold(Default_t)
289
+ */
290
+ FullPivLU& setThreshold(const RealScalar& threshold)
291
+ {
292
+ m_usePrescribedThreshold = true;
293
+ m_prescribedThreshold = threshold;
294
+ return *this;
295
+ }
296
+
297
+ /** Allows to come back to the default behavior, letting Eigen use its default formula for
298
+ * determining the threshold.
299
+ *
300
+ * You should pass the special object Eigen::Default as parameter here.
301
+ * \code lu.setThreshold(Eigen::Default); \endcode
302
+ *
303
+ * See the documentation of setThreshold(const RealScalar&).
304
+ */
305
+ FullPivLU& setThreshold(Default_t)
306
+ {
307
+ m_usePrescribedThreshold = false;
308
+ return *this;
309
+ }
310
+
311
+ /** Returns the threshold that will be used by certain methods such as rank().
312
+ *
313
+ * See the documentation of setThreshold(const RealScalar&).
314
+ */
315
+ RealScalar threshold() const
316
+ {
317
+ eigen_assert(m_isInitialized || m_usePrescribedThreshold);
318
+ return m_usePrescribedThreshold ? m_prescribedThreshold
319
+ // this formula comes from experimenting (see "LU precision tuning" thread on the list)
320
+ // and turns out to be identical to Higham's formula used already in LDLt.
321
+ : NumTraits<Scalar>::epsilon() * RealScalar(m_lu.diagonalSize());
322
+ }
323
+
324
+ /** \returns the rank of the matrix of which *this is the LU decomposition.
325
+ *
326
+ * \note This method has to determine which pivots should be considered nonzero.
327
+ * For that, it uses the threshold value that you can control by calling
328
+ * setThreshold(const RealScalar&).
329
+ */
330
+ inline Index rank() const
331
+ {
332
+ using std::abs;
333
+ eigen_assert(m_isInitialized && "LU is not initialized.");
334
+ RealScalar premultiplied_threshold = abs(m_maxpivot) * threshold();
335
+ Index result = 0;
336
+ for(Index i = 0; i < m_nonzero_pivots; ++i)
337
+ result += (abs(m_lu.coeff(i,i)) > premultiplied_threshold);
338
+ return result;
339
+ }
340
+
341
+ /** \returns the dimension of the kernel of the matrix of which *this is the LU decomposition.
342
+ *
343
+ * \note This method has to determine which pivots should be considered nonzero.
344
+ * For that, it uses the threshold value that you can control by calling
345
+ * setThreshold(const RealScalar&).
346
+ */
347
+ inline Index dimensionOfKernel() const
348
+ {
349
+ eigen_assert(m_isInitialized && "LU is not initialized.");
350
+ return cols() - rank();
351
+ }
352
+
353
+ /** \returns true if the matrix of which *this is the LU decomposition represents an injective
354
+ * linear map, i.e. has trivial kernel; false otherwise.
355
+ *
356
+ * \note This method has to determine which pivots should be considered nonzero.
357
+ * For that, it uses the threshold value that you can control by calling
358
+ * setThreshold(const RealScalar&).
359
+ */
360
+ inline bool isInjective() const
361
+ {
362
+ eigen_assert(m_isInitialized && "LU is not initialized.");
363
+ return rank() == cols();
364
+ }
365
+
366
+ /** \returns true if the matrix of which *this is the LU decomposition represents a surjective
367
+ * linear map; false otherwise.
368
+ *
369
+ * \note This method has to determine which pivots should be considered nonzero.
370
+ * For that, it uses the threshold value that you can control by calling
371
+ * setThreshold(const RealScalar&).
372
+ */
373
+ inline bool isSurjective() const
374
+ {
375
+ eigen_assert(m_isInitialized && "LU is not initialized.");
376
+ return rank() == rows();
377
+ }
378
+
379
+ /** \returns true if the matrix of which *this is the LU decomposition is invertible.
380
+ *
381
+ * \note This method has to determine which pivots should be considered nonzero.
382
+ * For that, it uses the threshold value that you can control by calling
383
+ * setThreshold(const RealScalar&).
384
+ */
385
+ inline bool isInvertible() const
386
+ {
387
+ eigen_assert(m_isInitialized && "LU is not initialized.");
388
+ return isInjective() && (m_lu.rows() == m_lu.cols());
389
+ }
390
+
391
+ /** \returns the inverse of the matrix of which *this is the LU decomposition.
392
+ *
393
+ * \note If this matrix is not invertible, the returned matrix has undefined coefficients.
394
+ * Use isInvertible() to first determine whether this matrix is invertible.
395
+ *
396
+ * \sa MatrixBase::inverse()
397
+ */
398
+ inline const Inverse<FullPivLU> inverse() const
399
+ {
400
+ eigen_assert(m_isInitialized && "LU is not initialized.");
401
+ eigen_assert(m_lu.rows() == m_lu.cols() && "You can't take the inverse of a non-square matrix!");
402
+ return Inverse<FullPivLU>(*this);
403
+ }
404
+
405
+ MatrixType reconstructedMatrix() const;
406
+
407
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
408
+ inline Index rows() const EIGEN_NOEXCEPT { return m_lu.rows(); }
409
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
410
+ inline Index cols() const EIGEN_NOEXCEPT { return m_lu.cols(); }
411
+
412
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
413
+ template<typename RhsType, typename DstType>
414
+ void _solve_impl(const RhsType &rhs, DstType &dst) const;
415
+
416
+ template<bool Conjugate, typename RhsType, typename DstType>
417
+ void _solve_impl_transposed(const RhsType &rhs, DstType &dst) const;
418
+ #endif
419
+
420
+ protected:
421
+
422
+ static void check_template_parameters()
423
+ {
424
+ EIGEN_STATIC_ASSERT_NON_INTEGER(Scalar);
425
+ }
426
+
427
+ void computeInPlace();
428
+
429
+ MatrixType m_lu;
430
+ PermutationPType m_p;
431
+ PermutationQType m_q;
432
+ IntColVectorType m_rowsTranspositions;
433
+ IntRowVectorType m_colsTranspositions;
434
+ Index m_nonzero_pivots;
435
+ RealScalar m_l1_norm;
436
+ RealScalar m_maxpivot, m_prescribedThreshold;
437
+ signed char m_det_pq;
438
+ bool m_isInitialized, m_usePrescribedThreshold;
439
+ };
440
+
441
+ template<typename MatrixType>
442
+ FullPivLU<MatrixType>::FullPivLU()
443
+ : m_isInitialized(false), m_usePrescribedThreshold(false)
444
+ {
445
+ }
446
+
447
+ template<typename MatrixType>
448
+ FullPivLU<MatrixType>::FullPivLU(Index rows, Index cols)
449
+ : m_lu(rows, cols),
450
+ m_p(rows),
451
+ m_q(cols),
452
+ m_rowsTranspositions(rows),
453
+ m_colsTranspositions(cols),
454
+ m_isInitialized(false),
455
+ m_usePrescribedThreshold(false)
456
+ {
457
+ }
458
+
459
+ template<typename MatrixType>
460
+ template<typename InputType>
461
+ FullPivLU<MatrixType>::FullPivLU(const EigenBase<InputType>& matrix)
462
+ : m_lu(matrix.rows(), matrix.cols()),
463
+ m_p(matrix.rows()),
464
+ m_q(matrix.cols()),
465
+ m_rowsTranspositions(matrix.rows()),
466
+ m_colsTranspositions(matrix.cols()),
467
+ m_isInitialized(false),
468
+ m_usePrescribedThreshold(false)
469
+ {
470
+ compute(matrix.derived());
471
+ }
472
+
473
+ template<typename MatrixType>
474
+ template<typename InputType>
475
+ FullPivLU<MatrixType>::FullPivLU(EigenBase<InputType>& matrix)
476
+ : m_lu(matrix.derived()),
477
+ m_p(matrix.rows()),
478
+ m_q(matrix.cols()),
479
+ m_rowsTranspositions(matrix.rows()),
480
+ m_colsTranspositions(matrix.cols()),
481
+ m_isInitialized(false),
482
+ m_usePrescribedThreshold(false)
483
+ {
484
+ computeInPlace();
485
+ }
486
+
487
+ template<typename MatrixType>
488
+ void FullPivLU<MatrixType>::computeInPlace()
489
+ {
490
+ check_template_parameters();
491
+
492
+ // the permutations are stored as int indices, so just to be sure:
493
+ eigen_assert(m_lu.rows()<=NumTraits<int>::highest() && m_lu.cols()<=NumTraits<int>::highest());
494
+
495
+ m_l1_norm = m_lu.cwiseAbs().colwise().sum().maxCoeff();
496
+
497
+ const Index size = m_lu.diagonalSize();
498
+ const Index rows = m_lu.rows();
499
+ const Index cols = m_lu.cols();
500
+
501
+ // will store the transpositions, before we accumulate them at the end.
502
+ // can't accumulate on-the-fly because that will be done in reverse order for the rows.
503
+ m_rowsTranspositions.resize(m_lu.rows());
504
+ m_colsTranspositions.resize(m_lu.cols());
505
+ Index number_of_transpositions = 0; // number of NONTRIVIAL transpositions, i.e. m_rowsTranspositions[i]!=i
506
+
507
+ m_nonzero_pivots = size; // the generic case is that in which all pivots are nonzero (invertible case)
508
+ m_maxpivot = RealScalar(0);
509
+
510
+ for(Index k = 0; k < size; ++k)
511
+ {
512
+ // First, we need to find the pivot.
513
+
514
+ // biggest coefficient in the remaining bottom-right corner (starting at row k, col k)
515
+ Index row_of_biggest_in_corner, col_of_biggest_in_corner;
516
+ typedef internal::scalar_score_coeff_op<Scalar> Scoring;
517
+ typedef typename Scoring::result_type Score;
518
+ Score biggest_in_corner;
519
+ biggest_in_corner = m_lu.bottomRightCorner(rows-k, cols-k)
520
+ .unaryExpr(Scoring())
521
+ .maxCoeff(&row_of_biggest_in_corner, &col_of_biggest_in_corner);
522
+ row_of_biggest_in_corner += k; // correct the values! since they were computed in the corner,
523
+ col_of_biggest_in_corner += k; // need to add k to them.
524
+
525
+ if(biggest_in_corner==Score(0))
526
+ {
527
+ // before exiting, make sure to initialize the still uninitialized transpositions
528
+ // in a sane state without destroying what we already have.
529
+ m_nonzero_pivots = k;
530
+ for(Index i = k; i < size; ++i)
531
+ {
532
+ m_rowsTranspositions.coeffRef(i) = internal::convert_index<StorageIndex>(i);
533
+ m_colsTranspositions.coeffRef(i) = internal::convert_index<StorageIndex>(i);
534
+ }
535
+ break;
536
+ }
537
+
538
+ RealScalar abs_pivot = internal::abs_knowing_score<Scalar>()(m_lu(row_of_biggest_in_corner, col_of_biggest_in_corner), biggest_in_corner);
539
+ if(abs_pivot > m_maxpivot) m_maxpivot = abs_pivot;
540
+
541
+ // Now that we've found the pivot, we need to apply the row/col swaps to
542
+ // bring it to the location (k,k).
543
+
544
+ m_rowsTranspositions.coeffRef(k) = internal::convert_index<StorageIndex>(row_of_biggest_in_corner);
545
+ m_colsTranspositions.coeffRef(k) = internal::convert_index<StorageIndex>(col_of_biggest_in_corner);
546
+ if(k != row_of_biggest_in_corner) {
547
+ m_lu.row(k).swap(m_lu.row(row_of_biggest_in_corner));
548
+ ++number_of_transpositions;
549
+ }
550
+ if(k != col_of_biggest_in_corner) {
551
+ m_lu.col(k).swap(m_lu.col(col_of_biggest_in_corner));
552
+ ++number_of_transpositions;
553
+ }
554
+
555
+ // Now that the pivot is at the right location, we update the remaining
556
+ // bottom-right corner by Gaussian elimination.
557
+
558
+ if(k<rows-1)
559
+ m_lu.col(k).tail(rows-k-1) /= m_lu.coeff(k,k);
560
+ if(k<size-1)
561
+ m_lu.block(k+1,k+1,rows-k-1,cols-k-1).noalias() -= m_lu.col(k).tail(rows-k-1) * m_lu.row(k).tail(cols-k-1);
562
+ }
563
+
564
+ // the main loop is over, we still have to accumulate the transpositions to find the
565
+ // permutations P and Q
566
+
567
+ m_p.setIdentity(rows);
568
+ for(Index k = size-1; k >= 0; --k)
569
+ m_p.applyTranspositionOnTheRight(k, m_rowsTranspositions.coeff(k));
570
+
571
+ m_q.setIdentity(cols);
572
+ for(Index k = 0; k < size; ++k)
573
+ m_q.applyTranspositionOnTheRight(k, m_colsTranspositions.coeff(k));
574
+
575
+ m_det_pq = (number_of_transpositions%2) ? -1 : 1;
576
+
577
+ m_isInitialized = true;
578
+ }
579
+
580
+ template<typename MatrixType>
581
+ typename internal::traits<MatrixType>::Scalar FullPivLU<MatrixType>::determinant() const
582
+ {
583
+ eigen_assert(m_isInitialized && "LU is not initialized.");
584
+ eigen_assert(m_lu.rows() == m_lu.cols() && "You can't take the determinant of a non-square matrix!");
585
+ return Scalar(m_det_pq) * Scalar(m_lu.diagonal().prod());
586
+ }
587
+
588
+ /** \returns the matrix represented by the decomposition,
589
+ * i.e., it returns the product: \f$ P^{-1} L U Q^{-1} \f$.
590
+ * This function is provided for debug purposes. */
591
+ template<typename MatrixType>
592
+ MatrixType FullPivLU<MatrixType>::reconstructedMatrix() const
593
+ {
594
+ eigen_assert(m_isInitialized && "LU is not initialized.");
595
+ const Index smalldim = (std::min)(m_lu.rows(), m_lu.cols());
596
+ // LU
597
+ MatrixType res(m_lu.rows(),m_lu.cols());
598
+ // FIXME the .toDenseMatrix() should not be needed...
599
+ res = m_lu.leftCols(smalldim)
600
+ .template triangularView<UnitLower>().toDenseMatrix()
601
+ * m_lu.topRows(smalldim)
602
+ .template triangularView<Upper>().toDenseMatrix();
603
+
604
+ // P^{-1}(LU)
605
+ res = m_p.inverse() * res;
606
+
607
+ // (P^{-1}LU)Q^{-1}
608
+ res = res * m_q.inverse();
609
+
610
+ return res;
611
+ }
612
+
613
+ /********* Implementation of kernel() **************************************************/
614
+
615
+ namespace internal {
616
+ template<typename _MatrixType>
617
+ struct kernel_retval<FullPivLU<_MatrixType> >
618
+ : kernel_retval_base<FullPivLU<_MatrixType> >
619
+ {
620
+ EIGEN_MAKE_KERNEL_HELPERS(FullPivLU<_MatrixType>)
621
+
622
+ enum { MaxSmallDimAtCompileTime = EIGEN_SIZE_MIN_PREFER_FIXED(
623
+ MatrixType::MaxColsAtCompileTime,
624
+ MatrixType::MaxRowsAtCompileTime)
625
+ };
626
+
627
+ template<typename Dest> void evalTo(Dest& dst) const
628
+ {
629
+ using std::abs;
630
+ const Index cols = dec().matrixLU().cols(), dimker = cols - rank();
631
+ if(dimker == 0)
632
+ {
633
+ // The Kernel is just {0}, so it doesn't have a basis properly speaking, but let's
634
+ // avoid crashing/asserting as that depends on floating point calculations. Let's
635
+ // just return a single column vector filled with zeros.
636
+ dst.setZero();
637
+ return;
638
+ }
639
+
640
+ /* Let us use the following lemma:
641
+ *
642
+ * Lemma: If the matrix A has the LU decomposition PAQ = LU,
643
+ * then Ker A = Q(Ker U).
644
+ *
645
+ * Proof: trivial: just keep in mind that P, Q, L are invertible.
646
+ */
647
+
648
+ /* Thus, all we need to do is to compute Ker U, and then apply Q.
649
+ *
650
+ * U is upper triangular, with eigenvalues sorted so that any zeros appear at the end.
651
+ * Thus, the diagonal of U ends with exactly
652
+ * dimKer zero's. Let us use that to construct dimKer linearly
653
+ * independent vectors in Ker U.
654
+ */
655
+
656
+ Matrix<Index, Dynamic, 1, 0, MaxSmallDimAtCompileTime, 1> pivots(rank());
657
+ RealScalar premultiplied_threshold = dec().maxPivot() * dec().threshold();
658
+ Index p = 0;
659
+ for(Index i = 0; i < dec().nonzeroPivots(); ++i)
660
+ if(abs(dec().matrixLU().coeff(i,i)) > premultiplied_threshold)
661
+ pivots.coeffRef(p++) = i;
662
+ eigen_internal_assert(p == rank());
663
+
664
+ // we construct a temporaty trapezoid matrix m, by taking the U matrix and
665
+ // permuting the rows and cols to bring the nonnegligible pivots to the top of
666
+ // the main diagonal. We need that to be able to apply our triangular solvers.
667
+ // FIXME when we get triangularView-for-rectangular-matrices, this can be simplified
668
+ Matrix<typename MatrixType::Scalar, Dynamic, Dynamic, MatrixType::Options,
669
+ MaxSmallDimAtCompileTime, MatrixType::MaxColsAtCompileTime>
670
+ m(dec().matrixLU().block(0, 0, rank(), cols));
671
+ for(Index i = 0; i < rank(); ++i)
672
+ {
673
+ if(i) m.row(i).head(i).setZero();
674
+ m.row(i).tail(cols-i) = dec().matrixLU().row(pivots.coeff(i)).tail(cols-i);
675
+ }
676
+ m.block(0, 0, rank(), rank());
677
+ m.block(0, 0, rank(), rank()).template triangularView<StrictlyLower>().setZero();
678
+ for(Index i = 0; i < rank(); ++i)
679
+ m.col(i).swap(m.col(pivots.coeff(i)));
680
+
681
+ // ok, we have our trapezoid matrix, we can apply the triangular solver.
682
+ // notice that the math behind this suggests that we should apply this to the
683
+ // negative of the RHS, but for performance we just put the negative sign elsewhere, see below.
684
+ m.topLeftCorner(rank(), rank())
685
+ .template triangularView<Upper>().solveInPlace(
686
+ m.topRightCorner(rank(), dimker)
687
+ );
688
+
689
+ // now we must undo the column permutation that we had applied!
690
+ for(Index i = rank()-1; i >= 0; --i)
691
+ m.col(i).swap(m.col(pivots.coeff(i)));
692
+
693
+ // see the negative sign in the next line, that's what we were talking about above.
694
+ for(Index i = 0; i < rank(); ++i) dst.row(dec().permutationQ().indices().coeff(i)) = -m.row(i).tail(dimker);
695
+ for(Index i = rank(); i < cols; ++i) dst.row(dec().permutationQ().indices().coeff(i)).setZero();
696
+ for(Index k = 0; k < dimker; ++k) dst.coeffRef(dec().permutationQ().indices().coeff(rank()+k), k) = Scalar(1);
697
+ }
698
+ };
699
+
700
+ /***** Implementation of image() *****************************************************/
701
+
702
+ template<typename _MatrixType>
703
+ struct image_retval<FullPivLU<_MatrixType> >
704
+ : image_retval_base<FullPivLU<_MatrixType> >
705
+ {
706
+ EIGEN_MAKE_IMAGE_HELPERS(FullPivLU<_MatrixType>)
707
+
708
+ enum { MaxSmallDimAtCompileTime = EIGEN_SIZE_MIN_PREFER_FIXED(
709
+ MatrixType::MaxColsAtCompileTime,
710
+ MatrixType::MaxRowsAtCompileTime)
711
+ };
712
+
713
+ template<typename Dest> void evalTo(Dest& dst) const
714
+ {
715
+ using std::abs;
716
+ if(rank() == 0)
717
+ {
718
+ // The Image is just {0}, so it doesn't have a basis properly speaking, but let's
719
+ // avoid crashing/asserting as that depends on floating point calculations. Let's
720
+ // just return a single column vector filled with zeros.
721
+ dst.setZero();
722
+ return;
723
+ }
724
+
725
+ Matrix<Index, Dynamic, 1, 0, MaxSmallDimAtCompileTime, 1> pivots(rank());
726
+ RealScalar premultiplied_threshold = dec().maxPivot() * dec().threshold();
727
+ Index p = 0;
728
+ for(Index i = 0; i < dec().nonzeroPivots(); ++i)
729
+ if(abs(dec().matrixLU().coeff(i,i)) > premultiplied_threshold)
730
+ pivots.coeffRef(p++) = i;
731
+ eigen_internal_assert(p == rank());
732
+
733
+ for(Index i = 0; i < rank(); ++i)
734
+ dst.col(i) = originalMatrix().col(dec().permutationQ().indices().coeff(pivots.coeff(i)));
735
+ }
736
+ };
737
+
738
+ /***** Implementation of solve() *****************************************************/
739
+
740
+ } // end namespace internal
741
+
742
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
743
+ template<typename _MatrixType>
744
+ template<typename RhsType, typename DstType>
745
+ void FullPivLU<_MatrixType>::_solve_impl(const RhsType &rhs, DstType &dst) const
746
+ {
747
+ /* The decomposition PAQ = LU can be rewritten as A = P^{-1} L U Q^{-1}.
748
+ * So we proceed as follows:
749
+ * Step 1: compute c = P * rhs.
750
+ * Step 2: replace c by the solution x to Lx = c. Exists because L is invertible.
751
+ * Step 3: replace c by the solution x to Ux = c. May or may not exist.
752
+ * Step 4: result = Q * c;
753
+ */
754
+
755
+ const Index rows = this->rows(),
756
+ cols = this->cols(),
757
+ nonzero_pivots = this->rank();
758
+ const Index smalldim = (std::min)(rows, cols);
759
+
760
+ if(nonzero_pivots == 0)
761
+ {
762
+ dst.setZero();
763
+ return;
764
+ }
765
+
766
+ typename RhsType::PlainObject c(rhs.rows(), rhs.cols());
767
+
768
+ // Step 1
769
+ c = permutationP() * rhs;
770
+
771
+ // Step 2
772
+ m_lu.topLeftCorner(smalldim,smalldim)
773
+ .template triangularView<UnitLower>()
774
+ .solveInPlace(c.topRows(smalldim));
775
+ if(rows>cols)
776
+ c.bottomRows(rows-cols) -= m_lu.bottomRows(rows-cols) * c.topRows(cols);
777
+
778
+ // Step 3
779
+ m_lu.topLeftCorner(nonzero_pivots, nonzero_pivots)
780
+ .template triangularView<Upper>()
781
+ .solveInPlace(c.topRows(nonzero_pivots));
782
+
783
+ // Step 4
784
+ for(Index i = 0; i < nonzero_pivots; ++i)
785
+ dst.row(permutationQ().indices().coeff(i)) = c.row(i);
786
+ for(Index i = nonzero_pivots; i < m_lu.cols(); ++i)
787
+ dst.row(permutationQ().indices().coeff(i)).setZero();
788
+ }
789
+
790
+ template<typename _MatrixType>
791
+ template<bool Conjugate, typename RhsType, typename DstType>
792
+ void FullPivLU<_MatrixType>::_solve_impl_transposed(const RhsType &rhs, DstType &dst) const
793
+ {
794
+ /* The decomposition PAQ = LU can be rewritten as A = P^{-1} L U Q^{-1},
795
+ * and since permutations are real and unitary, we can write this
796
+ * as A^T = Q U^T L^T P,
797
+ * So we proceed as follows:
798
+ * Step 1: compute c = Q^T rhs.
799
+ * Step 2: replace c by the solution x to U^T x = c. May or may not exist.
800
+ * Step 3: replace c by the solution x to L^T x = c.
801
+ * Step 4: result = P^T c.
802
+ * If Conjugate is true, replace "^T" by "^*" above.
803
+ */
804
+
805
+ const Index rows = this->rows(), cols = this->cols(),
806
+ nonzero_pivots = this->rank();
807
+ const Index smalldim = (std::min)(rows, cols);
808
+
809
+ if(nonzero_pivots == 0)
810
+ {
811
+ dst.setZero();
812
+ return;
813
+ }
814
+
815
+ typename RhsType::PlainObject c(rhs.rows(), rhs.cols());
816
+
817
+ // Step 1
818
+ c = permutationQ().inverse() * rhs;
819
+
820
+ // Step 2
821
+ m_lu.topLeftCorner(nonzero_pivots, nonzero_pivots)
822
+ .template triangularView<Upper>()
823
+ .transpose()
824
+ .template conjugateIf<Conjugate>()
825
+ .solveInPlace(c.topRows(nonzero_pivots));
826
+
827
+ // Step 3
828
+ m_lu.topLeftCorner(smalldim, smalldim)
829
+ .template triangularView<UnitLower>()
830
+ .transpose()
831
+ .template conjugateIf<Conjugate>()
832
+ .solveInPlace(c.topRows(smalldim));
833
+
834
+ // Step 4
835
+ PermutationPType invp = permutationP().inverse().eval();
836
+ for(Index i = 0; i < smalldim; ++i)
837
+ dst.row(invp.indices().coeff(i)) = c.row(i);
838
+ for(Index i = smalldim; i < rows; ++i)
839
+ dst.row(invp.indices().coeff(i)).setZero();
840
+ }
841
+
842
+ #endif
843
+
844
+ namespace internal {
845
+
846
+
847
+ /***** Implementation of inverse() *****************************************************/
848
+ template<typename DstXprType, typename MatrixType>
849
+ struct Assignment<DstXprType, Inverse<FullPivLU<MatrixType> >, internal::assign_op<typename DstXprType::Scalar,typename FullPivLU<MatrixType>::Scalar>, Dense2Dense>
850
+ {
851
+ typedef FullPivLU<MatrixType> LuType;
852
+ typedef Inverse<LuType> SrcXprType;
853
+ static void run(DstXprType &dst, const SrcXprType &src, const internal::assign_op<typename DstXprType::Scalar,typename MatrixType::Scalar> &)
854
+ {
855
+ dst = src.nestedExpression().solve(MatrixType::Identity(src.rows(), src.cols()));
856
+ }
857
+ };
858
+ } // end namespace internal
859
+
860
+ /******* MatrixBase methods *****************************************************************/
861
+
862
+ /** \lu_module
863
+ *
864
+ * \return the full-pivoting LU decomposition of \c *this.
865
+ *
866
+ * \sa class FullPivLU
867
+ */
868
+ template<typename Derived>
869
+ inline const FullPivLU<typename MatrixBase<Derived>::PlainObject>
870
+ MatrixBase<Derived>::fullPivLu() const
871
+ {
872
+ return FullPivLU<PlainObject>(eval());
873
+ }
874
+
875
+ } // end namespace Eigen
876
+
877
+ #endif // EIGEN_LU_H