umappp 0.1.2

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Files changed (395) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +25 -0
  3. data/README.md +110 -0
  4. data/ext/umappp/extconf.rb +25 -0
  5. data/ext/umappp/numo.hpp +867 -0
  6. data/ext/umappp/umappp.cpp +225 -0
  7. data/lib/umappp/version.rb +5 -0
  8. data/lib/umappp.rb +41 -0
  9. data/vendor/Eigen/Cholesky +45 -0
  10. data/vendor/Eigen/CholmodSupport +48 -0
  11. data/vendor/Eigen/Core +384 -0
  12. data/vendor/Eigen/Dense +7 -0
  13. data/vendor/Eigen/Eigen +2 -0
  14. data/vendor/Eigen/Eigenvalues +60 -0
  15. data/vendor/Eigen/Geometry +59 -0
  16. data/vendor/Eigen/Householder +29 -0
  17. data/vendor/Eigen/IterativeLinearSolvers +48 -0
  18. data/vendor/Eigen/Jacobi +32 -0
  19. data/vendor/Eigen/KLUSupport +41 -0
  20. data/vendor/Eigen/LU +47 -0
  21. data/vendor/Eigen/MetisSupport +35 -0
  22. data/vendor/Eigen/OrderingMethods +70 -0
  23. data/vendor/Eigen/PaStiXSupport +49 -0
  24. data/vendor/Eigen/PardisoSupport +35 -0
  25. data/vendor/Eigen/QR +50 -0
  26. data/vendor/Eigen/QtAlignedMalloc +39 -0
  27. data/vendor/Eigen/SPQRSupport +34 -0
  28. data/vendor/Eigen/SVD +50 -0
  29. data/vendor/Eigen/Sparse +34 -0
  30. data/vendor/Eigen/SparseCholesky +37 -0
  31. data/vendor/Eigen/SparseCore +69 -0
  32. data/vendor/Eigen/SparseLU +50 -0
  33. data/vendor/Eigen/SparseQR +36 -0
  34. data/vendor/Eigen/StdDeque +27 -0
  35. data/vendor/Eigen/StdList +26 -0
  36. data/vendor/Eigen/StdVector +27 -0
  37. data/vendor/Eigen/SuperLUSupport +64 -0
  38. data/vendor/Eigen/UmfPackSupport +40 -0
  39. data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
  40. data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
  41. data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  42. data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
  43. data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
  44. data/vendor/Eigen/src/Core/Array.h +417 -0
  45. data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
  46. data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
  47. data/vendor/Eigen/src/Core/Assign.h +90 -0
  48. data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
  49. data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
  50. data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
  51. data/vendor/Eigen/src/Core/Block.h +448 -0
  52. data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
  53. data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
  54. data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
  55. data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
  56. data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
  57. data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
  58. data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
  59. data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  60. data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  61. data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
  62. data/vendor/Eigen/src/Core/DenseBase.h +701 -0
  63. data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
  64. data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
  65. data/vendor/Eigen/src/Core/Diagonal.h +258 -0
  66. data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
  67. data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
  68. data/vendor/Eigen/src/Core/Dot.h +318 -0
  69. data/vendor/Eigen/src/Core/EigenBase.h +160 -0
  70. data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
  71. data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
  72. data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
  73. data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
  74. data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
  75. data/vendor/Eigen/src/Core/IO.h +258 -0
  76. data/vendor/Eigen/src/Core/IndexedView.h +237 -0
  77. data/vendor/Eigen/src/Core/Inverse.h +117 -0
  78. data/vendor/Eigen/src/Core/Map.h +171 -0
  79. data/vendor/Eigen/src/Core/MapBase.h +310 -0
  80. data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
  81. data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
  82. data/vendor/Eigen/src/Core/Matrix.h +565 -0
  83. data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
  84. data/vendor/Eigen/src/Core/NestByValue.h +85 -0
  85. data/vendor/Eigen/src/Core/NoAlias.h +109 -0
  86. data/vendor/Eigen/src/Core/NumTraits.h +335 -0
  87. data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  88. data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
  89. data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
  90. data/vendor/Eigen/src/Core/Product.h +191 -0
  91. data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
  92. data/vendor/Eigen/src/Core/Random.h +218 -0
  93. data/vendor/Eigen/src/Core/Redux.h +515 -0
  94. data/vendor/Eigen/src/Core/Ref.h +381 -0
  95. data/vendor/Eigen/src/Core/Replicate.h +142 -0
  96. data/vendor/Eigen/src/Core/Reshaped.h +454 -0
  97. data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
  98. data/vendor/Eigen/src/Core/Reverse.h +217 -0
  99. data/vendor/Eigen/src/Core/Select.h +164 -0
  100. data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
  101. data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  102. data/vendor/Eigen/src/Core/Solve.h +188 -0
  103. data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
  104. data/vendor/Eigen/src/Core/SolverBase.h +168 -0
  105. data/vendor/Eigen/src/Core/StableNorm.h +251 -0
  106. data/vendor/Eigen/src/Core/StlIterators.h +463 -0
  107. data/vendor/Eigen/src/Core/Stride.h +116 -0
  108. data/vendor/Eigen/src/Core/Swap.h +68 -0
  109. data/vendor/Eigen/src/Core/Transpose.h +464 -0
  110. data/vendor/Eigen/src/Core/Transpositions.h +386 -0
  111. data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
  112. data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
  113. data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
  114. data/vendor/Eigen/src/Core/Visitor.h +381 -0
  115. data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
  116. data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
  117. data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
  118. data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
  119. data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  120. data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
  121. data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
  122. data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  123. data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
  124. data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
  125. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  126. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  127. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  128. data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
  129. data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
  130. data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  131. data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
  132. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  133. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  134. data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
  135. data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
  136. data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  137. data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
  138. data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  139. data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  140. data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  141. data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  142. data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  143. data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  144. data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
  145. data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  146. data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
  147. data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
  148. data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  149. data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
  150. data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
  151. data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
  152. data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
  153. data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  154. data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  155. data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  156. data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  157. data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  158. data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  159. data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  160. data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  161. data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
  162. data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
  163. data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
  164. data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
  165. data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
  166. data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
  167. data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
  168. data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  169. data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
  170. data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
  171. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
  172. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
  173. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  174. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
  175. data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
  176. data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  177. data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
  178. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
  179. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
  180. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
  181. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  182. data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  183. data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
  184. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
  185. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
  186. data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  187. data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  188. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
  189. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
  190. data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
  191. data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
  192. data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  193. data/vendor/Eigen/src/Core/util/Constants.h +563 -0
  194. data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
  195. data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
  196. data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  197. data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
  198. data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
  199. data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
  200. data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
  201. data/vendor/Eigen/src/Core/util/Meta.h +812 -0
  202. data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
  203. data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
  204. data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  205. data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
  206. data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  207. data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
  208. data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  209. data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
  210. data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  211. data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  212. data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  213. data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  214. data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  215. data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  216. data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
  217. data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
  218. data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  219. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
  220. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  221. data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
  222. data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
  223. data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
  224. data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
  225. data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
  226. data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
  227. data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
  228. data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
  229. data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
  230. data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
  231. data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
  232. data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
  233. data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
  234. data/vendor/Eigen/src/Geometry/Translation.h +202 -0
  235. data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
  236. data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  237. data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
  238. data/vendor/Eigen/src/Householder/Householder.h +176 -0
  239. data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
  240. data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  241. data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
  242. data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
  243. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
  244. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
  245. data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
  246. data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
  247. data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
  248. data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
  249. data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  250. data/vendor/Eigen/src/LU/Determinant.h +117 -0
  251. data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
  252. data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
  253. data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
  254. data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  255. data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
  256. data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  257. data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
  258. data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
  259. data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
  260. data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  261. data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
  262. data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
  263. data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  264. data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
  265. data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
  266. data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
  267. data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  268. data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
  269. data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
  270. data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
  271. data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  272. data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
  273. data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  274. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
  275. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
  276. data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
  277. data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
  278. data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  279. data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  280. data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
  281. data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
  282. data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  283. data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
  284. data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
  285. data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
  286. data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
  287. data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  288. data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
  289. data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  290. data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
  291. data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
  292. data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
  293. data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  294. data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
  295. data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
  296. data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
  297. data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
  298. data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  299. data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  300. data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  301. data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  302. data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
  303. data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
  304. data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
  305. data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  306. data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
  307. data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  308. data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  309. data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  310. data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
  311. data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  312. data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  313. data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  314. data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  315. data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  316. data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  317. data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  318. data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  319. data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  320. data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  321. data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  322. data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  323. data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
  324. data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
  325. data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
  326. data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
  327. data/vendor/Eigen/src/StlSupport/details.h +84 -0
  328. data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
  329. data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
  330. data/vendor/Eigen/src/misc/Image.h +82 -0
  331. data/vendor/Eigen/src/misc/Kernel.h +79 -0
  332. data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
  333. data/vendor/Eigen/src/misc/blas.h +440 -0
  334. data/vendor/Eigen/src/misc/lapack.h +152 -0
  335. data/vendor/Eigen/src/misc/lapacke.h +16292 -0
  336. data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
  337. data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
  338. data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
  339. data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
  340. data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  341. data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
  342. data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  343. data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  344. data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
  345. data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
  346. data/vendor/aarand/aarand.hpp +114 -0
  347. data/vendor/annoy/annoylib.h +1495 -0
  348. data/vendor/annoy/kissrandom.h +120 -0
  349. data/vendor/annoy/mman.h +242 -0
  350. data/vendor/hnswlib/bruteforce.h +152 -0
  351. data/vendor/hnswlib/hnswalg.h +1192 -0
  352. data/vendor/hnswlib/hnswlib.h +108 -0
  353. data/vendor/hnswlib/space_ip.h +282 -0
  354. data/vendor/hnswlib/space_l2.h +281 -0
  355. data/vendor/hnswlib/visited_list_pool.h +79 -0
  356. data/vendor/irlba/irlba.hpp +575 -0
  357. data/vendor/irlba/lanczos.hpp +212 -0
  358. data/vendor/irlba/parallel.hpp +474 -0
  359. data/vendor/irlba/utils.hpp +224 -0
  360. data/vendor/irlba/wrappers.hpp +228 -0
  361. data/vendor/kmeans/Base.hpp +75 -0
  362. data/vendor/kmeans/Details.hpp +79 -0
  363. data/vendor/kmeans/HartiganWong.hpp +492 -0
  364. data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
  365. data/vendor/kmeans/InitializeNone.hpp +44 -0
  366. data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
  367. data/vendor/kmeans/InitializeRandom.hpp +91 -0
  368. data/vendor/kmeans/Kmeans.hpp +161 -0
  369. data/vendor/kmeans/Lloyd.hpp +134 -0
  370. data/vendor/kmeans/MiniBatch.hpp +269 -0
  371. data/vendor/kmeans/QuickSearch.hpp +179 -0
  372. data/vendor/kmeans/compute_centroids.hpp +32 -0
  373. data/vendor/kmeans/compute_wcss.hpp +27 -0
  374. data/vendor/kmeans/is_edge_case.hpp +42 -0
  375. data/vendor/kmeans/random.hpp +55 -0
  376. data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
  377. data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
  378. data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
  379. data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
  380. data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
  381. data/vendor/knncolle/knncolle.hpp +34 -0
  382. data/vendor/knncolle/utils/Base.hpp +100 -0
  383. data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
  384. data/vendor/knncolle/utils/distances.hpp +98 -0
  385. data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
  386. data/vendor/powerit/PowerIterations.hpp +157 -0
  387. data/vendor/umappp/NeighborList.hpp +37 -0
  388. data/vendor/umappp/Umap.hpp +662 -0
  389. data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
  390. data/vendor/umappp/find_ab.hpp +157 -0
  391. data/vendor/umappp/neighbor_similarities.hpp +136 -0
  392. data/vendor/umappp/optimize_layout.hpp +285 -0
  393. data/vendor/umappp/spectral_init.hpp +181 -0
  394. data/vendor/umappp/umappp.hpp +13 -0
  395. metadata +465 -0
@@ -0,0 +1,635 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2016 Rasmus Munk Larsen <rmlarsen@google.com>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_COMPLETEORTHOGONALDECOMPOSITION_H
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+ #define EIGEN_COMPLETEORTHOGONALDECOMPOSITION_H
12
+
13
+ namespace Eigen {
14
+
15
+ namespace internal {
16
+ template <typename _MatrixType>
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+ struct traits<CompleteOrthogonalDecomposition<_MatrixType> >
18
+ : traits<_MatrixType> {
19
+ typedef MatrixXpr XprKind;
20
+ typedef SolverStorage StorageKind;
21
+ typedef int StorageIndex;
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+ enum { Flags = 0 };
23
+ };
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+
25
+ } // end namespace internal
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+
27
+ /** \ingroup QR_Module
28
+ *
29
+ * \class CompleteOrthogonalDecomposition
30
+ *
31
+ * \brief Complete orthogonal decomposition (COD) of a matrix.
32
+ *
33
+ * \param MatrixType the type of the matrix of which we are computing the COD.
34
+ *
35
+ * This class performs a rank-revealing complete orthogonal decomposition of a
36
+ * matrix \b A into matrices \b P, \b Q, \b T, and \b Z such that
37
+ * \f[
38
+ * \mathbf{A} \, \mathbf{P} = \mathbf{Q} \,
39
+ * \begin{bmatrix} \mathbf{T} & \mathbf{0} \\
40
+ * \mathbf{0} & \mathbf{0} \end{bmatrix} \, \mathbf{Z}
41
+ * \f]
42
+ * by using Householder transformations. Here, \b P is a permutation matrix,
43
+ * \b Q and \b Z are unitary matrices and \b T an upper triangular matrix of
44
+ * size rank-by-rank. \b A may be rank deficient.
45
+ *
46
+ * This class supports the \link InplaceDecomposition inplace decomposition \endlink mechanism.
47
+ *
48
+ * \sa MatrixBase::completeOrthogonalDecomposition()
49
+ */
50
+ template <typename _MatrixType> class CompleteOrthogonalDecomposition
51
+ : public SolverBase<CompleteOrthogonalDecomposition<_MatrixType> >
52
+ {
53
+ public:
54
+ typedef _MatrixType MatrixType;
55
+ typedef SolverBase<CompleteOrthogonalDecomposition> Base;
56
+
57
+ template<typename Derived>
58
+ friend struct internal::solve_assertion;
59
+
60
+ EIGEN_GENERIC_PUBLIC_INTERFACE(CompleteOrthogonalDecomposition)
61
+ enum {
62
+ MaxRowsAtCompileTime = MatrixType::MaxRowsAtCompileTime,
63
+ MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime
64
+ };
65
+ typedef typename internal::plain_diag_type<MatrixType>::type HCoeffsType;
66
+ typedef PermutationMatrix<ColsAtCompileTime, MaxColsAtCompileTime>
67
+ PermutationType;
68
+ typedef typename internal::plain_row_type<MatrixType, Index>::type
69
+ IntRowVectorType;
70
+ typedef typename internal::plain_row_type<MatrixType>::type RowVectorType;
71
+ typedef typename internal::plain_row_type<MatrixType, RealScalar>::type
72
+ RealRowVectorType;
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+ typedef HouseholderSequence<
74
+ MatrixType, typename internal::remove_all<
75
+ typename HCoeffsType::ConjugateReturnType>::type>
76
+ HouseholderSequenceType;
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+ typedef typename MatrixType::PlainObject PlainObject;
78
+
79
+ private:
80
+ typedef typename PermutationType::Index PermIndexType;
81
+
82
+ public:
83
+ /**
84
+ * \brief Default Constructor.
85
+ *
86
+ * The default constructor is useful in cases in which the user intends to
87
+ * perform decompositions via
88
+ * \c CompleteOrthogonalDecomposition::compute(const* MatrixType&).
89
+ */
90
+ CompleteOrthogonalDecomposition() : m_cpqr(), m_zCoeffs(), m_temp() {}
91
+
92
+ /** \brief Default Constructor with memory preallocation
93
+ *
94
+ * Like the default constructor but with preallocation of the internal data
95
+ * according to the specified problem \a size.
96
+ * \sa CompleteOrthogonalDecomposition()
97
+ */
98
+ CompleteOrthogonalDecomposition(Index rows, Index cols)
99
+ : m_cpqr(rows, cols), m_zCoeffs((std::min)(rows, cols)), m_temp(cols) {}
100
+
101
+ /** \brief Constructs a complete orthogonal decomposition from a given
102
+ * matrix.
103
+ *
104
+ * This constructor computes the complete orthogonal decomposition of the
105
+ * matrix \a matrix by calling the method compute(). The default
106
+ * threshold for rank determination will be used. It is a short cut for:
107
+ *
108
+ * \code
109
+ * CompleteOrthogonalDecomposition<MatrixType> cod(matrix.rows(),
110
+ * matrix.cols());
111
+ * cod.setThreshold(Default);
112
+ * cod.compute(matrix);
113
+ * \endcode
114
+ *
115
+ * \sa compute()
116
+ */
117
+ template <typename InputType>
118
+ explicit CompleteOrthogonalDecomposition(const EigenBase<InputType>& matrix)
119
+ : m_cpqr(matrix.rows(), matrix.cols()),
120
+ m_zCoeffs((std::min)(matrix.rows(), matrix.cols())),
121
+ m_temp(matrix.cols())
122
+ {
123
+ compute(matrix.derived());
124
+ }
125
+
126
+ /** \brief Constructs a complete orthogonal decomposition from a given matrix
127
+ *
128
+ * This overloaded constructor is provided for \link InplaceDecomposition inplace decomposition \endlink when \c MatrixType is a Eigen::Ref.
129
+ *
130
+ * \sa CompleteOrthogonalDecomposition(const EigenBase&)
131
+ */
132
+ template<typename InputType>
133
+ explicit CompleteOrthogonalDecomposition(EigenBase<InputType>& matrix)
134
+ : m_cpqr(matrix.derived()),
135
+ m_zCoeffs((std::min)(matrix.rows(), matrix.cols())),
136
+ m_temp(matrix.cols())
137
+ {
138
+ computeInPlace();
139
+ }
140
+
141
+ #ifdef EIGEN_PARSED_BY_DOXYGEN
142
+ /** This method computes the minimum-norm solution X to a least squares
143
+ * problem \f[\mathrm{minimize} \|A X - B\|, \f] where \b A is the matrix of
144
+ * which \c *this is the complete orthogonal decomposition.
145
+ *
146
+ * \param b the right-hand sides of the problem to solve.
147
+ *
148
+ * \returns a solution.
149
+ *
150
+ */
151
+ template <typename Rhs>
152
+ inline const Solve<CompleteOrthogonalDecomposition, Rhs> solve(
153
+ const MatrixBase<Rhs>& b) const;
154
+ #endif
155
+
156
+ HouseholderSequenceType householderQ(void) const;
157
+ HouseholderSequenceType matrixQ(void) const { return m_cpqr.householderQ(); }
158
+
159
+ /** \returns the matrix \b Z.
160
+ */
161
+ MatrixType matrixZ() const {
162
+ MatrixType Z = MatrixType::Identity(m_cpqr.cols(), m_cpqr.cols());
163
+ applyZOnTheLeftInPlace<false>(Z);
164
+ return Z;
165
+ }
166
+
167
+ /** \returns a reference to the matrix where the complete orthogonal
168
+ * decomposition is stored
169
+ */
170
+ const MatrixType& matrixQTZ() const { return m_cpqr.matrixQR(); }
171
+
172
+ /** \returns a reference to the matrix where the complete orthogonal
173
+ * decomposition is stored.
174
+ * \warning The strict lower part and \code cols() - rank() \endcode right
175
+ * columns of this matrix contains internal values.
176
+ * Only the upper triangular part should be referenced. To get it, use
177
+ * \code matrixT().template triangularView<Upper>() \endcode
178
+ * For rank-deficient matrices, use
179
+ * \code
180
+ * matrixR().topLeftCorner(rank(), rank()).template triangularView<Upper>()
181
+ * \endcode
182
+ */
183
+ const MatrixType& matrixT() const { return m_cpqr.matrixQR(); }
184
+
185
+ template <typename InputType>
186
+ CompleteOrthogonalDecomposition& compute(const EigenBase<InputType>& matrix) {
187
+ // Compute the column pivoted QR factorization A P = Q R.
188
+ m_cpqr.compute(matrix);
189
+ computeInPlace();
190
+ return *this;
191
+ }
192
+
193
+ /** \returns a const reference to the column permutation matrix */
194
+ const PermutationType& colsPermutation() const {
195
+ return m_cpqr.colsPermutation();
196
+ }
197
+
198
+ /** \returns the absolute value of the determinant of the matrix of which
199
+ * *this is the complete orthogonal decomposition. It has only linear
200
+ * complexity (that is, O(n) where n is the dimension of the square matrix)
201
+ * as the complete orthogonal decomposition has already been computed.
202
+ *
203
+ * \note This is only for square matrices.
204
+ *
205
+ * \warning a determinant can be very big or small, so for matrices
206
+ * of large enough dimension, there is a risk of overflow/underflow.
207
+ * One way to work around that is to use logAbsDeterminant() instead.
208
+ *
209
+ * \sa logAbsDeterminant(), MatrixBase::determinant()
210
+ */
211
+ typename MatrixType::RealScalar absDeterminant() const;
212
+
213
+ /** \returns the natural log of the absolute value of the determinant of the
214
+ * matrix of which *this is the complete orthogonal decomposition. It has
215
+ * only linear complexity (that is, O(n) where n is the dimension of the
216
+ * square matrix) as the complete orthogonal decomposition has already been
217
+ * computed.
218
+ *
219
+ * \note This is only for square matrices.
220
+ *
221
+ * \note This method is useful to work around the risk of overflow/underflow
222
+ * that's inherent to determinant computation.
223
+ *
224
+ * \sa absDeterminant(), MatrixBase::determinant()
225
+ */
226
+ typename MatrixType::RealScalar logAbsDeterminant() const;
227
+
228
+ /** \returns the rank of the matrix of which *this is the complete orthogonal
229
+ * decomposition.
230
+ *
231
+ * \note This method has to determine which pivots should be considered
232
+ * nonzero. For that, it uses the threshold value that you can control by
233
+ * calling setThreshold(const RealScalar&).
234
+ */
235
+ inline Index rank() const { return m_cpqr.rank(); }
236
+
237
+ /** \returns the dimension of the kernel of the matrix of which *this is the
238
+ * complete orthogonal decomposition.
239
+ *
240
+ * \note This method has to determine which pivots should be considered
241
+ * nonzero. For that, it uses the threshold value that you can control by
242
+ * calling setThreshold(const RealScalar&).
243
+ */
244
+ inline Index dimensionOfKernel() const { return m_cpqr.dimensionOfKernel(); }
245
+
246
+ /** \returns true if the matrix of which *this is the decomposition represents
247
+ * an injective linear map, i.e. has trivial kernel; false otherwise.
248
+ *
249
+ * \note This method has to determine which pivots should be considered
250
+ * nonzero. For that, it uses the threshold value that you can control by
251
+ * calling setThreshold(const RealScalar&).
252
+ */
253
+ inline bool isInjective() const { return m_cpqr.isInjective(); }
254
+
255
+ /** \returns true if the matrix of which *this is the decomposition represents
256
+ * a surjective linear map; false otherwise.
257
+ *
258
+ * \note This method has to determine which pivots should be considered
259
+ * nonzero. For that, it uses the threshold value that you can control by
260
+ * calling setThreshold(const RealScalar&).
261
+ */
262
+ inline bool isSurjective() const { return m_cpqr.isSurjective(); }
263
+
264
+ /** \returns true if the matrix of which *this is the complete orthogonal
265
+ * decomposition is invertible.
266
+ *
267
+ * \note This method has to determine which pivots should be considered
268
+ * nonzero. For that, it uses the threshold value that you can control by
269
+ * calling setThreshold(const RealScalar&).
270
+ */
271
+ inline bool isInvertible() const { return m_cpqr.isInvertible(); }
272
+
273
+ /** \returns the pseudo-inverse of the matrix of which *this is the complete
274
+ * orthogonal decomposition.
275
+ * \warning: Do not compute \c this->pseudoInverse()*rhs to solve a linear systems.
276
+ * It is more efficient and numerically stable to call \c this->solve(rhs).
277
+ */
278
+ inline const Inverse<CompleteOrthogonalDecomposition> pseudoInverse() const
279
+ {
280
+ eigen_assert(m_cpqr.m_isInitialized && "CompleteOrthogonalDecomposition is not initialized.");
281
+ return Inverse<CompleteOrthogonalDecomposition>(*this);
282
+ }
283
+
284
+ inline Index rows() const { return m_cpqr.rows(); }
285
+ inline Index cols() const { return m_cpqr.cols(); }
286
+
287
+ /** \returns a const reference to the vector of Householder coefficients used
288
+ * to represent the factor \c Q.
289
+ *
290
+ * For advanced uses only.
291
+ */
292
+ inline const HCoeffsType& hCoeffs() const { return m_cpqr.hCoeffs(); }
293
+
294
+ /** \returns a const reference to the vector of Householder coefficients
295
+ * used to represent the factor \c Z.
296
+ *
297
+ * For advanced uses only.
298
+ */
299
+ const HCoeffsType& zCoeffs() const { return m_zCoeffs; }
300
+
301
+ /** Allows to prescribe a threshold to be used by certain methods, such as
302
+ * rank(), who need to determine when pivots are to be considered nonzero.
303
+ * Most be called before calling compute().
304
+ *
305
+ * When it needs to get the threshold value, Eigen calls threshold(). By
306
+ * default, this uses a formula to automatically determine a reasonable
307
+ * threshold. Once you have called the present method
308
+ * setThreshold(const RealScalar&), your value is used instead.
309
+ *
310
+ * \param threshold The new value to use as the threshold.
311
+ *
312
+ * A pivot will be considered nonzero if its absolute value is strictly
313
+ * greater than
314
+ * \f$ \vert pivot \vert \leqslant threshold \times \vert maxpivot \vert \f$
315
+ * where maxpivot is the biggest pivot.
316
+ *
317
+ * If you want to come back to the default behavior, call
318
+ * setThreshold(Default_t)
319
+ */
320
+ CompleteOrthogonalDecomposition& setThreshold(const RealScalar& threshold) {
321
+ m_cpqr.setThreshold(threshold);
322
+ return *this;
323
+ }
324
+
325
+ /** Allows to come back to the default behavior, letting Eigen use its default
326
+ * formula for determining the threshold.
327
+ *
328
+ * You should pass the special object Eigen::Default as parameter here.
329
+ * \code qr.setThreshold(Eigen::Default); \endcode
330
+ *
331
+ * See the documentation of setThreshold(const RealScalar&).
332
+ */
333
+ CompleteOrthogonalDecomposition& setThreshold(Default_t) {
334
+ m_cpqr.setThreshold(Default);
335
+ return *this;
336
+ }
337
+
338
+ /** Returns the threshold that will be used by certain methods such as rank().
339
+ *
340
+ * See the documentation of setThreshold(const RealScalar&).
341
+ */
342
+ RealScalar threshold() const { return m_cpqr.threshold(); }
343
+
344
+ /** \returns the number of nonzero pivots in the complete orthogonal
345
+ * decomposition. Here nonzero is meant in the exact sense, not in a
346
+ * fuzzy sense. So that notion isn't really intrinsically interesting,
347
+ * but it is still useful when implementing algorithms.
348
+ *
349
+ * \sa rank()
350
+ */
351
+ inline Index nonzeroPivots() const { return m_cpqr.nonzeroPivots(); }
352
+
353
+ /** \returns the absolute value of the biggest pivot, i.e. the biggest
354
+ * diagonal coefficient of R.
355
+ */
356
+ inline RealScalar maxPivot() const { return m_cpqr.maxPivot(); }
357
+
358
+ /** \brief Reports whether the complete orthogonal decomposition was
359
+ * successful.
360
+ *
361
+ * \note This function always returns \c Success. It is provided for
362
+ * compatibility
363
+ * with other factorization routines.
364
+ * \returns \c Success
365
+ */
366
+ ComputationInfo info() const {
367
+ eigen_assert(m_cpqr.m_isInitialized && "Decomposition is not initialized.");
368
+ return Success;
369
+ }
370
+
371
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
372
+ template <typename RhsType, typename DstType>
373
+ void _solve_impl(const RhsType& rhs, DstType& dst) const;
374
+
375
+ template<bool Conjugate, typename RhsType, typename DstType>
376
+ void _solve_impl_transposed(const RhsType &rhs, DstType &dst) const;
377
+ #endif
378
+
379
+ protected:
380
+ static void check_template_parameters() {
381
+ EIGEN_STATIC_ASSERT_NON_INTEGER(Scalar);
382
+ }
383
+
384
+ template<bool Transpose_, typename Rhs>
385
+ void _check_solve_assertion(const Rhs& b) const {
386
+ EIGEN_ONLY_USED_FOR_DEBUG(b);
387
+ eigen_assert(m_cpqr.m_isInitialized && "CompleteOrthogonalDecomposition is not initialized.");
388
+ eigen_assert((Transpose_?derived().cols():derived().rows())==b.rows() && "CompleteOrthogonalDecomposition::solve(): invalid number of rows of the right hand side matrix b");
389
+ }
390
+
391
+ void computeInPlace();
392
+
393
+ /** Overwrites \b rhs with \f$ \mathbf{Z} * \mathbf{rhs} \f$ or
394
+ * \f$ \mathbf{\overline Z} * \mathbf{rhs} \f$ if \c Conjugate
395
+ * is set to \c true.
396
+ */
397
+ template <bool Conjugate, typename Rhs>
398
+ void applyZOnTheLeftInPlace(Rhs& rhs) const;
399
+
400
+ /** Overwrites \b rhs with \f$ \mathbf{Z}^* * \mathbf{rhs} \f$.
401
+ */
402
+ template <typename Rhs>
403
+ void applyZAdjointOnTheLeftInPlace(Rhs& rhs) const;
404
+
405
+ ColPivHouseholderQR<MatrixType> m_cpqr;
406
+ HCoeffsType m_zCoeffs;
407
+ RowVectorType m_temp;
408
+ };
409
+
410
+ template <typename MatrixType>
411
+ typename MatrixType::RealScalar
412
+ CompleteOrthogonalDecomposition<MatrixType>::absDeterminant() const {
413
+ return m_cpqr.absDeterminant();
414
+ }
415
+
416
+ template <typename MatrixType>
417
+ typename MatrixType::RealScalar
418
+ CompleteOrthogonalDecomposition<MatrixType>::logAbsDeterminant() const {
419
+ return m_cpqr.logAbsDeterminant();
420
+ }
421
+
422
+ /** Performs the complete orthogonal decomposition of the given matrix \a
423
+ * matrix. The result of the factorization is stored into \c *this, and a
424
+ * reference to \c *this is returned.
425
+ *
426
+ * \sa class CompleteOrthogonalDecomposition,
427
+ * CompleteOrthogonalDecomposition(const MatrixType&)
428
+ */
429
+ template <typename MatrixType>
430
+ void CompleteOrthogonalDecomposition<MatrixType>::computeInPlace()
431
+ {
432
+ check_template_parameters();
433
+
434
+ // the column permutation is stored as int indices, so just to be sure:
435
+ eigen_assert(m_cpqr.cols() <= NumTraits<int>::highest());
436
+
437
+ const Index rank = m_cpqr.rank();
438
+ const Index cols = m_cpqr.cols();
439
+ const Index rows = m_cpqr.rows();
440
+ m_zCoeffs.resize((std::min)(rows, cols));
441
+ m_temp.resize(cols);
442
+
443
+ if (rank < cols) {
444
+ // We have reduced the (permuted) matrix to the form
445
+ // [R11 R12]
446
+ // [ 0 R22]
447
+ // where R11 is r-by-r (r = rank) upper triangular, R12 is
448
+ // r-by-(n-r), and R22 is empty or the norm of R22 is negligible.
449
+ // We now compute the complete orthogonal decomposition by applying
450
+ // Householder transformations from the right to the upper trapezoidal
451
+ // matrix X = [R11 R12] to zero out R12 and obtain the factorization
452
+ // [R11 R12] = [T11 0] * Z, where T11 is r-by-r upper triangular and
453
+ // Z = Z(0) * Z(1) ... Z(r-1) is an n-by-n orthogonal matrix.
454
+ // We store the data representing Z in R12 and m_zCoeffs.
455
+ for (Index k = rank - 1; k >= 0; --k) {
456
+ if (k != rank - 1) {
457
+ // Given the API for Householder reflectors, it is more convenient if
458
+ // we swap the leading parts of columns k and r-1 (zero-based) to form
459
+ // the matrix X_k = [X(0:k, k), X(0:k, r:n)]
460
+ m_cpqr.m_qr.col(k).head(k + 1).swap(
461
+ m_cpqr.m_qr.col(rank - 1).head(k + 1));
462
+ }
463
+ // Construct Householder reflector Z(k) to zero out the last row of X_k,
464
+ // i.e. choose Z(k) such that
465
+ // [X(k, k), X(k, r:n)] * Z(k) = [beta, 0, .., 0].
466
+ RealScalar beta;
467
+ m_cpqr.m_qr.row(k)
468
+ .tail(cols - rank + 1)
469
+ .makeHouseholderInPlace(m_zCoeffs(k), beta);
470
+ m_cpqr.m_qr(k, rank - 1) = beta;
471
+ if (k > 0) {
472
+ // Apply Z(k) to the first k rows of X_k
473
+ m_cpqr.m_qr.topRightCorner(k, cols - rank + 1)
474
+ .applyHouseholderOnTheRight(
475
+ m_cpqr.m_qr.row(k).tail(cols - rank).adjoint(), m_zCoeffs(k),
476
+ &m_temp(0));
477
+ }
478
+ if (k != rank - 1) {
479
+ // Swap X(0:k,k) back to its proper location.
480
+ m_cpqr.m_qr.col(k).head(k + 1).swap(
481
+ m_cpqr.m_qr.col(rank - 1).head(k + 1));
482
+ }
483
+ }
484
+ }
485
+ }
486
+
487
+ template <typename MatrixType>
488
+ template <bool Conjugate, typename Rhs>
489
+ void CompleteOrthogonalDecomposition<MatrixType>::applyZOnTheLeftInPlace(
490
+ Rhs& rhs) const {
491
+ const Index cols = this->cols();
492
+ const Index nrhs = rhs.cols();
493
+ const Index rank = this->rank();
494
+ Matrix<typename Rhs::Scalar, Dynamic, 1> temp((std::max)(cols, nrhs));
495
+ for (Index k = rank-1; k >= 0; --k) {
496
+ if (k != rank - 1) {
497
+ rhs.row(k).swap(rhs.row(rank - 1));
498
+ }
499
+ rhs.middleRows(rank - 1, cols - rank + 1)
500
+ .applyHouseholderOnTheLeft(
501
+ matrixQTZ().row(k).tail(cols - rank).transpose().template conjugateIf<!Conjugate>(), zCoeffs().template conjugateIf<Conjugate>()(k),
502
+ &temp(0));
503
+ if (k != rank - 1) {
504
+ rhs.row(k).swap(rhs.row(rank - 1));
505
+ }
506
+ }
507
+ }
508
+
509
+ template <typename MatrixType>
510
+ template <typename Rhs>
511
+ void CompleteOrthogonalDecomposition<MatrixType>::applyZAdjointOnTheLeftInPlace(
512
+ Rhs& rhs) const {
513
+ const Index cols = this->cols();
514
+ const Index nrhs = rhs.cols();
515
+ const Index rank = this->rank();
516
+ Matrix<typename Rhs::Scalar, Dynamic, 1> temp((std::max)(cols, nrhs));
517
+ for (Index k = 0; k < rank; ++k) {
518
+ if (k != rank - 1) {
519
+ rhs.row(k).swap(rhs.row(rank - 1));
520
+ }
521
+ rhs.middleRows(rank - 1, cols - rank + 1)
522
+ .applyHouseholderOnTheLeft(
523
+ matrixQTZ().row(k).tail(cols - rank).adjoint(), zCoeffs()(k),
524
+ &temp(0));
525
+ if (k != rank - 1) {
526
+ rhs.row(k).swap(rhs.row(rank - 1));
527
+ }
528
+ }
529
+ }
530
+
531
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
532
+ template <typename _MatrixType>
533
+ template <typename RhsType, typename DstType>
534
+ void CompleteOrthogonalDecomposition<_MatrixType>::_solve_impl(
535
+ const RhsType& rhs, DstType& dst) const {
536
+ const Index rank = this->rank();
537
+ if (rank == 0) {
538
+ dst.setZero();
539
+ return;
540
+ }
541
+
542
+ // Compute c = Q^* * rhs
543
+ typename RhsType::PlainObject c(rhs);
544
+ c.applyOnTheLeft(matrixQ().setLength(rank).adjoint());
545
+
546
+ // Solve T z = c(1:rank, :)
547
+ dst.topRows(rank) = matrixT()
548
+ .topLeftCorner(rank, rank)
549
+ .template triangularView<Upper>()
550
+ .solve(c.topRows(rank));
551
+
552
+ const Index cols = this->cols();
553
+ if (rank < cols) {
554
+ // Compute y = Z^* * [ z ]
555
+ // [ 0 ]
556
+ dst.bottomRows(cols - rank).setZero();
557
+ applyZAdjointOnTheLeftInPlace(dst);
558
+ }
559
+
560
+ // Undo permutation to get x = P^{-1} * y.
561
+ dst = colsPermutation() * dst;
562
+ }
563
+
564
+ template<typename _MatrixType>
565
+ template<bool Conjugate, typename RhsType, typename DstType>
566
+ void CompleteOrthogonalDecomposition<_MatrixType>::_solve_impl_transposed(const RhsType &rhs, DstType &dst) const
567
+ {
568
+ const Index rank = this->rank();
569
+
570
+ if (rank == 0) {
571
+ dst.setZero();
572
+ return;
573
+ }
574
+
575
+ typename RhsType::PlainObject c(colsPermutation().transpose()*rhs);
576
+
577
+ if (rank < cols()) {
578
+ applyZOnTheLeftInPlace<!Conjugate>(c);
579
+ }
580
+
581
+ matrixT().topLeftCorner(rank, rank)
582
+ .template triangularView<Upper>()
583
+ .transpose().template conjugateIf<Conjugate>()
584
+ .solveInPlace(c.topRows(rank));
585
+
586
+ dst.topRows(rank) = c.topRows(rank);
587
+ dst.bottomRows(rows()-rank).setZero();
588
+
589
+ dst.applyOnTheLeft(householderQ().setLength(rank).template conjugateIf<!Conjugate>() );
590
+ }
591
+ #endif
592
+
593
+ namespace internal {
594
+
595
+ template<typename MatrixType>
596
+ struct traits<Inverse<CompleteOrthogonalDecomposition<MatrixType> > >
597
+ : traits<typename Transpose<typename MatrixType::PlainObject>::PlainObject>
598
+ {
599
+ enum { Flags = 0 };
600
+ };
601
+
602
+ template<typename DstXprType, typename MatrixType>
603
+ struct Assignment<DstXprType, Inverse<CompleteOrthogonalDecomposition<MatrixType> >, internal::assign_op<typename DstXprType::Scalar,typename CompleteOrthogonalDecomposition<MatrixType>::Scalar>, Dense2Dense>
604
+ {
605
+ typedef CompleteOrthogonalDecomposition<MatrixType> CodType;
606
+ typedef Inverse<CodType> SrcXprType;
607
+ static void run(DstXprType &dst, const SrcXprType &src, const internal::assign_op<typename DstXprType::Scalar,typename CodType::Scalar> &)
608
+ {
609
+ typedef Matrix<typename CodType::Scalar, CodType::RowsAtCompileTime, CodType::RowsAtCompileTime, 0, CodType::MaxRowsAtCompileTime, CodType::MaxRowsAtCompileTime> IdentityMatrixType;
610
+ dst = src.nestedExpression().solve(IdentityMatrixType::Identity(src.cols(), src.cols()));
611
+ }
612
+ };
613
+
614
+ } // end namespace internal
615
+
616
+ /** \returns the matrix Q as a sequence of householder transformations */
617
+ template <typename MatrixType>
618
+ typename CompleteOrthogonalDecomposition<MatrixType>::HouseholderSequenceType
619
+ CompleteOrthogonalDecomposition<MatrixType>::householderQ() const {
620
+ return m_cpqr.householderQ();
621
+ }
622
+
623
+ /** \return the complete orthogonal decomposition of \c *this.
624
+ *
625
+ * \sa class CompleteOrthogonalDecomposition
626
+ */
627
+ template <typename Derived>
628
+ const CompleteOrthogonalDecomposition<typename MatrixBase<Derived>::PlainObject>
629
+ MatrixBase<Derived>::completeOrthogonalDecomposition() const {
630
+ return CompleteOrthogonalDecomposition<PlainObject>(eval());
631
+ }
632
+
633
+ } // end namespace Eigen
634
+
635
+ #endif // EIGEN_COMPLETEORTHOGONALDECOMPOSITION_H