umappp 0.1.2

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Files changed (395) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +25 -0
  3. data/README.md +110 -0
  4. data/ext/umappp/extconf.rb +25 -0
  5. data/ext/umappp/numo.hpp +867 -0
  6. data/ext/umappp/umappp.cpp +225 -0
  7. data/lib/umappp/version.rb +5 -0
  8. data/lib/umappp.rb +41 -0
  9. data/vendor/Eigen/Cholesky +45 -0
  10. data/vendor/Eigen/CholmodSupport +48 -0
  11. data/vendor/Eigen/Core +384 -0
  12. data/vendor/Eigen/Dense +7 -0
  13. data/vendor/Eigen/Eigen +2 -0
  14. data/vendor/Eigen/Eigenvalues +60 -0
  15. data/vendor/Eigen/Geometry +59 -0
  16. data/vendor/Eigen/Householder +29 -0
  17. data/vendor/Eigen/IterativeLinearSolvers +48 -0
  18. data/vendor/Eigen/Jacobi +32 -0
  19. data/vendor/Eigen/KLUSupport +41 -0
  20. data/vendor/Eigen/LU +47 -0
  21. data/vendor/Eigen/MetisSupport +35 -0
  22. data/vendor/Eigen/OrderingMethods +70 -0
  23. data/vendor/Eigen/PaStiXSupport +49 -0
  24. data/vendor/Eigen/PardisoSupport +35 -0
  25. data/vendor/Eigen/QR +50 -0
  26. data/vendor/Eigen/QtAlignedMalloc +39 -0
  27. data/vendor/Eigen/SPQRSupport +34 -0
  28. data/vendor/Eigen/SVD +50 -0
  29. data/vendor/Eigen/Sparse +34 -0
  30. data/vendor/Eigen/SparseCholesky +37 -0
  31. data/vendor/Eigen/SparseCore +69 -0
  32. data/vendor/Eigen/SparseLU +50 -0
  33. data/vendor/Eigen/SparseQR +36 -0
  34. data/vendor/Eigen/StdDeque +27 -0
  35. data/vendor/Eigen/StdList +26 -0
  36. data/vendor/Eigen/StdVector +27 -0
  37. data/vendor/Eigen/SuperLUSupport +64 -0
  38. data/vendor/Eigen/UmfPackSupport +40 -0
  39. data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
  40. data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
  41. data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  42. data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
  43. data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
  44. data/vendor/Eigen/src/Core/Array.h +417 -0
  45. data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
  46. data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
  47. data/vendor/Eigen/src/Core/Assign.h +90 -0
  48. data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
  49. data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
  50. data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
  51. data/vendor/Eigen/src/Core/Block.h +448 -0
  52. data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
  53. data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
  54. data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
  55. data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
  56. data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
  57. data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
  58. data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
  59. data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  60. data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  61. data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
  62. data/vendor/Eigen/src/Core/DenseBase.h +701 -0
  63. data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
  64. data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
  65. data/vendor/Eigen/src/Core/Diagonal.h +258 -0
  66. data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
  67. data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
  68. data/vendor/Eigen/src/Core/Dot.h +318 -0
  69. data/vendor/Eigen/src/Core/EigenBase.h +160 -0
  70. data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
  71. data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
  72. data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
  73. data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
  74. data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
  75. data/vendor/Eigen/src/Core/IO.h +258 -0
  76. data/vendor/Eigen/src/Core/IndexedView.h +237 -0
  77. data/vendor/Eigen/src/Core/Inverse.h +117 -0
  78. data/vendor/Eigen/src/Core/Map.h +171 -0
  79. data/vendor/Eigen/src/Core/MapBase.h +310 -0
  80. data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
  81. data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
  82. data/vendor/Eigen/src/Core/Matrix.h +565 -0
  83. data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
  84. data/vendor/Eigen/src/Core/NestByValue.h +85 -0
  85. data/vendor/Eigen/src/Core/NoAlias.h +109 -0
  86. data/vendor/Eigen/src/Core/NumTraits.h +335 -0
  87. data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  88. data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
  89. data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
  90. data/vendor/Eigen/src/Core/Product.h +191 -0
  91. data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
  92. data/vendor/Eigen/src/Core/Random.h +218 -0
  93. data/vendor/Eigen/src/Core/Redux.h +515 -0
  94. data/vendor/Eigen/src/Core/Ref.h +381 -0
  95. data/vendor/Eigen/src/Core/Replicate.h +142 -0
  96. data/vendor/Eigen/src/Core/Reshaped.h +454 -0
  97. data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
  98. data/vendor/Eigen/src/Core/Reverse.h +217 -0
  99. data/vendor/Eigen/src/Core/Select.h +164 -0
  100. data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
  101. data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  102. data/vendor/Eigen/src/Core/Solve.h +188 -0
  103. data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
  104. data/vendor/Eigen/src/Core/SolverBase.h +168 -0
  105. data/vendor/Eigen/src/Core/StableNorm.h +251 -0
  106. data/vendor/Eigen/src/Core/StlIterators.h +463 -0
  107. data/vendor/Eigen/src/Core/Stride.h +116 -0
  108. data/vendor/Eigen/src/Core/Swap.h +68 -0
  109. data/vendor/Eigen/src/Core/Transpose.h +464 -0
  110. data/vendor/Eigen/src/Core/Transpositions.h +386 -0
  111. data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
  112. data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
  113. data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
  114. data/vendor/Eigen/src/Core/Visitor.h +381 -0
  115. data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
  116. data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
  117. data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
  118. data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
  119. data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  120. data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
  121. data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
  122. data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  123. data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
  124. data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
  125. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  126. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  127. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  128. data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
  129. data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
  130. data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  131. data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
  132. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  133. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  134. data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
  135. data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
  136. data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  137. data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
  138. data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  139. data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  140. data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  141. data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  142. data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  143. data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  144. data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
  145. data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  146. data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
  147. data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
  148. data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  149. data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
  150. data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
  151. data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
  152. data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
  153. data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  154. data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  155. data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  156. data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  157. data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  158. data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  159. data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  160. data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  161. data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
  162. data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
  163. data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
  164. data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
  165. data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
  166. data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
  167. data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
  168. data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  169. data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
  170. data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
  171. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
  172. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
  173. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  174. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
  175. data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
  176. data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  177. data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
  178. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
  179. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
  180. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
  181. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  182. data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  183. data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
  184. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
  185. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
  186. data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  187. data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  188. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
  189. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
  190. data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
  191. data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
  192. data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  193. data/vendor/Eigen/src/Core/util/Constants.h +563 -0
  194. data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
  195. data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
  196. data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  197. data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
  198. data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
  199. data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
  200. data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
  201. data/vendor/Eigen/src/Core/util/Meta.h +812 -0
  202. data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
  203. data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
  204. data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  205. data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
  206. data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  207. data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
  208. data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  209. data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
  210. data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  211. data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  212. data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  213. data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  214. data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  215. data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  216. data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
  217. data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
  218. data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  219. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
  220. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  221. data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
  222. data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
  223. data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
  224. data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
  225. data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
  226. data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
  227. data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
  228. data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
  229. data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
  230. data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
  231. data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
  232. data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
  233. data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
  234. data/vendor/Eigen/src/Geometry/Translation.h +202 -0
  235. data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
  236. data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  237. data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
  238. data/vendor/Eigen/src/Householder/Householder.h +176 -0
  239. data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
  240. data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  241. data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
  242. data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
  243. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
  244. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
  245. data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
  246. data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
  247. data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
  248. data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
  249. data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  250. data/vendor/Eigen/src/LU/Determinant.h +117 -0
  251. data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
  252. data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
  253. data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
  254. data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  255. data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
  256. data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  257. data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
  258. data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
  259. data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
  260. data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  261. data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
  262. data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
  263. data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  264. data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
  265. data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
  266. data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
  267. data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  268. data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
  269. data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
  270. data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
  271. data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  272. data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
  273. data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  274. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
  275. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
  276. data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
  277. data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
  278. data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  279. data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  280. data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
  281. data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
  282. data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  283. data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
  284. data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
  285. data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
  286. data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
  287. data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  288. data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
  289. data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  290. data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
  291. data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
  292. data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
  293. data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  294. data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
  295. data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
  296. data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
  297. data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
  298. data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  299. data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  300. data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  301. data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  302. data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
  303. data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
  304. data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
  305. data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  306. data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
  307. data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  308. data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  309. data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  310. data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
  311. data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  312. data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  313. data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  314. data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  315. data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  316. data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  317. data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  318. data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  319. data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  320. data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  321. data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  322. data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  323. data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
  324. data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
  325. data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
  326. data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
  327. data/vendor/Eigen/src/StlSupport/details.h +84 -0
  328. data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
  329. data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
  330. data/vendor/Eigen/src/misc/Image.h +82 -0
  331. data/vendor/Eigen/src/misc/Kernel.h +79 -0
  332. data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
  333. data/vendor/Eigen/src/misc/blas.h +440 -0
  334. data/vendor/Eigen/src/misc/lapack.h +152 -0
  335. data/vendor/Eigen/src/misc/lapacke.h +16292 -0
  336. data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
  337. data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
  338. data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
  339. data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
  340. data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  341. data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
  342. data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  343. data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  344. data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
  345. data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
  346. data/vendor/aarand/aarand.hpp +114 -0
  347. data/vendor/annoy/annoylib.h +1495 -0
  348. data/vendor/annoy/kissrandom.h +120 -0
  349. data/vendor/annoy/mman.h +242 -0
  350. data/vendor/hnswlib/bruteforce.h +152 -0
  351. data/vendor/hnswlib/hnswalg.h +1192 -0
  352. data/vendor/hnswlib/hnswlib.h +108 -0
  353. data/vendor/hnswlib/space_ip.h +282 -0
  354. data/vendor/hnswlib/space_l2.h +281 -0
  355. data/vendor/hnswlib/visited_list_pool.h +79 -0
  356. data/vendor/irlba/irlba.hpp +575 -0
  357. data/vendor/irlba/lanczos.hpp +212 -0
  358. data/vendor/irlba/parallel.hpp +474 -0
  359. data/vendor/irlba/utils.hpp +224 -0
  360. data/vendor/irlba/wrappers.hpp +228 -0
  361. data/vendor/kmeans/Base.hpp +75 -0
  362. data/vendor/kmeans/Details.hpp +79 -0
  363. data/vendor/kmeans/HartiganWong.hpp +492 -0
  364. data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
  365. data/vendor/kmeans/InitializeNone.hpp +44 -0
  366. data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
  367. data/vendor/kmeans/InitializeRandom.hpp +91 -0
  368. data/vendor/kmeans/Kmeans.hpp +161 -0
  369. data/vendor/kmeans/Lloyd.hpp +134 -0
  370. data/vendor/kmeans/MiniBatch.hpp +269 -0
  371. data/vendor/kmeans/QuickSearch.hpp +179 -0
  372. data/vendor/kmeans/compute_centroids.hpp +32 -0
  373. data/vendor/kmeans/compute_wcss.hpp +27 -0
  374. data/vendor/kmeans/is_edge_case.hpp +42 -0
  375. data/vendor/kmeans/random.hpp +55 -0
  376. data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
  377. data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
  378. data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
  379. data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
  380. data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
  381. data/vendor/knncolle/knncolle.hpp +34 -0
  382. data/vendor/knncolle/utils/Base.hpp +100 -0
  383. data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
  384. data/vendor/knncolle/utils/distances.hpp +98 -0
  385. data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
  386. data/vendor/powerit/PowerIterations.hpp +157 -0
  387. data/vendor/umappp/NeighborList.hpp +37 -0
  388. data/vendor/umappp/Umap.hpp +662 -0
  389. data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
  390. data/vendor/umappp/find_ab.hpp +157 -0
  391. data/vendor/umappp/neighbor_similarities.hpp +136 -0
  392. data/vendor/umappp/optimize_layout.hpp +285 -0
  393. data/vendor/umappp/spectral_init.hpp +181 -0
  394. data/vendor/umappp/umappp.hpp +13 -0
  395. metadata +465 -0
@@ -0,0 +1,558 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_LLT_H
11
+ #define EIGEN_LLT_H
12
+
13
+ namespace Eigen {
14
+
15
+ namespace internal{
16
+
17
+ template<typename _MatrixType, int _UpLo> struct traits<LLT<_MatrixType, _UpLo> >
18
+ : traits<_MatrixType>
19
+ {
20
+ typedef MatrixXpr XprKind;
21
+ typedef SolverStorage StorageKind;
22
+ typedef int StorageIndex;
23
+ enum { Flags = 0 };
24
+ };
25
+
26
+ template<typename MatrixType, int UpLo> struct LLT_Traits;
27
+ }
28
+
29
+ /** \ingroup Cholesky_Module
30
+ *
31
+ * \class LLT
32
+ *
33
+ * \brief Standard Cholesky decomposition (LL^T) of a matrix and associated features
34
+ *
35
+ * \tparam _MatrixType the type of the matrix of which we are computing the LL^T Cholesky decomposition
36
+ * \tparam _UpLo the triangular part that will be used for the decompositon: Lower (default) or Upper.
37
+ * The other triangular part won't be read.
38
+ *
39
+ * This class performs a LL^T Cholesky decomposition of a symmetric, positive definite
40
+ * matrix A such that A = LL^* = U^*U, where L is lower triangular.
41
+ *
42
+ * While the Cholesky decomposition is particularly useful to solve selfadjoint problems like D^*D x = b,
43
+ * for that purpose, we recommend the Cholesky decomposition without square root which is more stable
44
+ * and even faster. Nevertheless, this standard Cholesky decomposition remains useful in many other
45
+ * situations like generalised eigen problems with hermitian matrices.
46
+ *
47
+ * Remember that Cholesky decompositions are not rank-revealing. This LLT decomposition is only stable on positive definite matrices,
48
+ * use LDLT instead for the semidefinite case. Also, do not use a Cholesky decomposition to determine whether a system of equations
49
+ * has a solution.
50
+ *
51
+ * Example: \include LLT_example.cpp
52
+ * Output: \verbinclude LLT_example.out
53
+ *
54
+ * \b Performance: for best performance, it is recommended to use a column-major storage format
55
+ * with the Lower triangular part (the default), or, equivalently, a row-major storage format
56
+ * with the Upper triangular part. Otherwise, you might get a 20% slowdown for the full factorization
57
+ * step, and rank-updates can be up to 3 times slower.
58
+ *
59
+ * This class supports the \link InplaceDecomposition inplace decomposition \endlink mechanism.
60
+ *
61
+ * Note that during the decomposition, only the lower (or upper, as defined by _UpLo) triangular part of A is considered.
62
+ * Therefore, the strict lower part does not have to store correct values.
63
+ *
64
+ * \sa MatrixBase::llt(), SelfAdjointView::llt(), class LDLT
65
+ */
66
+ template<typename _MatrixType, int _UpLo> class LLT
67
+ : public SolverBase<LLT<_MatrixType, _UpLo> >
68
+ {
69
+ public:
70
+ typedef _MatrixType MatrixType;
71
+ typedef SolverBase<LLT> Base;
72
+ friend class SolverBase<LLT>;
73
+
74
+ EIGEN_GENERIC_PUBLIC_INTERFACE(LLT)
75
+ enum {
76
+ MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime
77
+ };
78
+
79
+ enum {
80
+ PacketSize = internal::packet_traits<Scalar>::size,
81
+ AlignmentMask = int(PacketSize)-1,
82
+ UpLo = _UpLo
83
+ };
84
+
85
+ typedef internal::LLT_Traits<MatrixType,UpLo> Traits;
86
+
87
+ /**
88
+ * \brief Default Constructor.
89
+ *
90
+ * The default constructor is useful in cases in which the user intends to
91
+ * perform decompositions via LLT::compute(const MatrixType&).
92
+ */
93
+ LLT() : m_matrix(), m_isInitialized(false) {}
94
+
95
+ /** \brief Default Constructor with memory preallocation
96
+ *
97
+ * Like the default constructor but with preallocation of the internal data
98
+ * according to the specified problem \a size.
99
+ * \sa LLT()
100
+ */
101
+ explicit LLT(Index size) : m_matrix(size, size),
102
+ m_isInitialized(false) {}
103
+
104
+ template<typename InputType>
105
+ explicit LLT(const EigenBase<InputType>& matrix)
106
+ : m_matrix(matrix.rows(), matrix.cols()),
107
+ m_isInitialized(false)
108
+ {
109
+ compute(matrix.derived());
110
+ }
111
+
112
+ /** \brief Constructs a LLT factorization from a given matrix
113
+ *
114
+ * This overloaded constructor is provided for \link InplaceDecomposition inplace decomposition \endlink when
115
+ * \c MatrixType is a Eigen::Ref.
116
+ *
117
+ * \sa LLT(const EigenBase&)
118
+ */
119
+ template<typename InputType>
120
+ explicit LLT(EigenBase<InputType>& matrix)
121
+ : m_matrix(matrix.derived()),
122
+ m_isInitialized(false)
123
+ {
124
+ compute(matrix.derived());
125
+ }
126
+
127
+ /** \returns a view of the upper triangular matrix U */
128
+ inline typename Traits::MatrixU matrixU() const
129
+ {
130
+ eigen_assert(m_isInitialized && "LLT is not initialized.");
131
+ return Traits::getU(m_matrix);
132
+ }
133
+
134
+ /** \returns a view of the lower triangular matrix L */
135
+ inline typename Traits::MatrixL matrixL() const
136
+ {
137
+ eigen_assert(m_isInitialized && "LLT is not initialized.");
138
+ return Traits::getL(m_matrix);
139
+ }
140
+
141
+ #ifdef EIGEN_PARSED_BY_DOXYGEN
142
+ /** \returns the solution x of \f$ A x = b \f$ using the current decomposition of A.
143
+ *
144
+ * Since this LLT class assumes anyway that the matrix A is invertible, the solution
145
+ * theoretically exists and is unique regardless of b.
146
+ *
147
+ * Example: \include LLT_solve.cpp
148
+ * Output: \verbinclude LLT_solve.out
149
+ *
150
+ * \sa solveInPlace(), MatrixBase::llt(), SelfAdjointView::llt()
151
+ */
152
+ template<typename Rhs>
153
+ inline const Solve<LLT, Rhs>
154
+ solve(const MatrixBase<Rhs>& b) const;
155
+ #endif
156
+
157
+ template<typename Derived>
158
+ void solveInPlace(const MatrixBase<Derived> &bAndX) const;
159
+
160
+ template<typename InputType>
161
+ LLT& compute(const EigenBase<InputType>& matrix);
162
+
163
+ /** \returns an estimate of the reciprocal condition number of the matrix of
164
+ * which \c *this is the Cholesky decomposition.
165
+ */
166
+ RealScalar rcond() const
167
+ {
168
+ eigen_assert(m_isInitialized && "LLT is not initialized.");
169
+ eigen_assert(m_info == Success && "LLT failed because matrix appears to be negative");
170
+ return internal::rcond_estimate_helper(m_l1_norm, *this);
171
+ }
172
+
173
+ /** \returns the LLT decomposition matrix
174
+ *
175
+ * TODO: document the storage layout
176
+ */
177
+ inline const MatrixType& matrixLLT() const
178
+ {
179
+ eigen_assert(m_isInitialized && "LLT is not initialized.");
180
+ return m_matrix;
181
+ }
182
+
183
+ MatrixType reconstructedMatrix() const;
184
+
185
+
186
+ /** \brief Reports whether previous computation was successful.
187
+ *
188
+ * \returns \c Success if computation was successful,
189
+ * \c NumericalIssue if the matrix.appears not to be positive definite.
190
+ */
191
+ ComputationInfo info() const
192
+ {
193
+ eigen_assert(m_isInitialized && "LLT is not initialized.");
194
+ return m_info;
195
+ }
196
+
197
+ /** \returns the adjoint of \c *this, that is, a const reference to the decomposition itself as the underlying matrix is self-adjoint.
198
+ *
199
+ * This method is provided for compatibility with other matrix decompositions, thus enabling generic code such as:
200
+ * \code x = decomposition.adjoint().solve(b) \endcode
201
+ */
202
+ const LLT& adjoint() const EIGEN_NOEXCEPT { return *this; };
203
+
204
+ inline EIGEN_CONSTEXPR Index rows() const EIGEN_NOEXCEPT { return m_matrix.rows(); }
205
+ inline EIGEN_CONSTEXPR Index cols() const EIGEN_NOEXCEPT { return m_matrix.cols(); }
206
+
207
+ template<typename VectorType>
208
+ LLT & rankUpdate(const VectorType& vec, const RealScalar& sigma = 1);
209
+
210
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
211
+ template<typename RhsType, typename DstType>
212
+ void _solve_impl(const RhsType &rhs, DstType &dst) const;
213
+
214
+ template<bool Conjugate, typename RhsType, typename DstType>
215
+ void _solve_impl_transposed(const RhsType &rhs, DstType &dst) const;
216
+ #endif
217
+
218
+ protected:
219
+
220
+ static void check_template_parameters()
221
+ {
222
+ EIGEN_STATIC_ASSERT_NON_INTEGER(Scalar);
223
+ }
224
+
225
+ /** \internal
226
+ * Used to compute and store L
227
+ * The strict upper part is not used and even not initialized.
228
+ */
229
+ MatrixType m_matrix;
230
+ RealScalar m_l1_norm;
231
+ bool m_isInitialized;
232
+ ComputationInfo m_info;
233
+ };
234
+
235
+ namespace internal {
236
+
237
+ template<typename Scalar, int UpLo> struct llt_inplace;
238
+
239
+ template<typename MatrixType, typename VectorType>
240
+ static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma)
241
+ {
242
+ using std::sqrt;
243
+ typedef typename MatrixType::Scalar Scalar;
244
+ typedef typename MatrixType::RealScalar RealScalar;
245
+ typedef typename MatrixType::ColXpr ColXpr;
246
+ typedef typename internal::remove_all<ColXpr>::type ColXprCleaned;
247
+ typedef typename ColXprCleaned::SegmentReturnType ColXprSegment;
248
+ typedef Matrix<Scalar,Dynamic,1> TempVectorType;
249
+ typedef typename TempVectorType::SegmentReturnType TempVecSegment;
250
+
251
+ Index n = mat.cols();
252
+ eigen_assert(mat.rows()==n && vec.size()==n);
253
+
254
+ TempVectorType temp;
255
+
256
+ if(sigma>0)
257
+ {
258
+ // This version is based on Givens rotations.
259
+ // It is faster than the other one below, but only works for updates,
260
+ // i.e., for sigma > 0
261
+ temp = sqrt(sigma) * vec;
262
+
263
+ for(Index i=0; i<n; ++i)
264
+ {
265
+ JacobiRotation<Scalar> g;
266
+ g.makeGivens(mat(i,i), -temp(i), &mat(i,i));
267
+
268
+ Index rs = n-i-1;
269
+ if(rs>0)
270
+ {
271
+ ColXprSegment x(mat.col(i).tail(rs));
272
+ TempVecSegment y(temp.tail(rs));
273
+ apply_rotation_in_the_plane(x, y, g);
274
+ }
275
+ }
276
+ }
277
+ else
278
+ {
279
+ temp = vec;
280
+ RealScalar beta = 1;
281
+ for(Index j=0; j<n; ++j)
282
+ {
283
+ RealScalar Ljj = numext::real(mat.coeff(j,j));
284
+ RealScalar dj = numext::abs2(Ljj);
285
+ Scalar wj = temp.coeff(j);
286
+ RealScalar swj2 = sigma*numext::abs2(wj);
287
+ RealScalar gamma = dj*beta + swj2;
288
+
289
+ RealScalar x = dj + swj2/beta;
290
+ if (x<=RealScalar(0))
291
+ return j;
292
+ RealScalar nLjj = sqrt(x);
293
+ mat.coeffRef(j,j) = nLjj;
294
+ beta += swj2/dj;
295
+
296
+ // Update the terms of L
297
+ Index rs = n-j-1;
298
+ if(rs)
299
+ {
300
+ temp.tail(rs) -= (wj/Ljj) * mat.col(j).tail(rs);
301
+ if(gamma != 0)
302
+ mat.col(j).tail(rs) = (nLjj/Ljj) * mat.col(j).tail(rs) + (nLjj * sigma*numext::conj(wj)/gamma)*temp.tail(rs);
303
+ }
304
+ }
305
+ }
306
+ return -1;
307
+ }
308
+
309
+ template<typename Scalar> struct llt_inplace<Scalar, Lower>
310
+ {
311
+ typedef typename NumTraits<Scalar>::Real RealScalar;
312
+ template<typename MatrixType>
313
+ static Index unblocked(MatrixType& mat)
314
+ {
315
+ using std::sqrt;
316
+
317
+ eigen_assert(mat.rows()==mat.cols());
318
+ const Index size = mat.rows();
319
+ for(Index k = 0; k < size; ++k)
320
+ {
321
+ Index rs = size-k-1; // remaining size
322
+
323
+ Block<MatrixType,Dynamic,1> A21(mat,k+1,k,rs,1);
324
+ Block<MatrixType,1,Dynamic> A10(mat,k,0,1,k);
325
+ Block<MatrixType,Dynamic,Dynamic> A20(mat,k+1,0,rs,k);
326
+
327
+ RealScalar x = numext::real(mat.coeff(k,k));
328
+ if (k>0) x -= A10.squaredNorm();
329
+ if (x<=RealScalar(0))
330
+ return k;
331
+ mat.coeffRef(k,k) = x = sqrt(x);
332
+ if (k>0 && rs>0) A21.noalias() -= A20 * A10.adjoint();
333
+ if (rs>0) A21 /= x;
334
+ }
335
+ return -1;
336
+ }
337
+
338
+ template<typename MatrixType>
339
+ static Index blocked(MatrixType& m)
340
+ {
341
+ eigen_assert(m.rows()==m.cols());
342
+ Index size = m.rows();
343
+ if(size<32)
344
+ return unblocked(m);
345
+
346
+ Index blockSize = size/8;
347
+ blockSize = (blockSize/16)*16;
348
+ blockSize = (std::min)((std::max)(blockSize,Index(8)), Index(128));
349
+
350
+ for (Index k=0; k<size; k+=blockSize)
351
+ {
352
+ // partition the matrix:
353
+ // A00 | - | -
354
+ // lu = A10 | A11 | -
355
+ // A20 | A21 | A22
356
+ Index bs = (std::min)(blockSize, size-k);
357
+ Index rs = size - k - bs;
358
+ Block<MatrixType,Dynamic,Dynamic> A11(m,k, k, bs,bs);
359
+ Block<MatrixType,Dynamic,Dynamic> A21(m,k+bs,k, rs,bs);
360
+ Block<MatrixType,Dynamic,Dynamic> A22(m,k+bs,k+bs,rs,rs);
361
+
362
+ Index ret;
363
+ if((ret=unblocked(A11))>=0) return k+ret;
364
+ if(rs>0) A11.adjoint().template triangularView<Upper>().template solveInPlace<OnTheRight>(A21);
365
+ if(rs>0) A22.template selfadjointView<Lower>().rankUpdate(A21,typename NumTraits<RealScalar>::Literal(-1)); // bottleneck
366
+ }
367
+ return -1;
368
+ }
369
+
370
+ template<typename MatrixType, typename VectorType>
371
+ static Index rankUpdate(MatrixType& mat, const VectorType& vec, const RealScalar& sigma)
372
+ {
373
+ return Eigen::internal::llt_rank_update_lower(mat, vec, sigma);
374
+ }
375
+ };
376
+
377
+ template<typename Scalar> struct llt_inplace<Scalar, Upper>
378
+ {
379
+ typedef typename NumTraits<Scalar>::Real RealScalar;
380
+
381
+ template<typename MatrixType>
382
+ static EIGEN_STRONG_INLINE Index unblocked(MatrixType& mat)
383
+ {
384
+ Transpose<MatrixType> matt(mat);
385
+ return llt_inplace<Scalar, Lower>::unblocked(matt);
386
+ }
387
+ template<typename MatrixType>
388
+ static EIGEN_STRONG_INLINE Index blocked(MatrixType& mat)
389
+ {
390
+ Transpose<MatrixType> matt(mat);
391
+ return llt_inplace<Scalar, Lower>::blocked(matt);
392
+ }
393
+ template<typename MatrixType, typename VectorType>
394
+ static Index rankUpdate(MatrixType& mat, const VectorType& vec, const RealScalar& sigma)
395
+ {
396
+ Transpose<MatrixType> matt(mat);
397
+ return llt_inplace<Scalar, Lower>::rankUpdate(matt, vec.conjugate(), sigma);
398
+ }
399
+ };
400
+
401
+ template<typename MatrixType> struct LLT_Traits<MatrixType,Lower>
402
+ {
403
+ typedef const TriangularView<const MatrixType, Lower> MatrixL;
404
+ typedef const TriangularView<const typename MatrixType::AdjointReturnType, Upper> MatrixU;
405
+ static inline MatrixL getL(const MatrixType& m) { return MatrixL(m); }
406
+ static inline MatrixU getU(const MatrixType& m) { return MatrixU(m.adjoint()); }
407
+ static bool inplace_decomposition(MatrixType& m)
408
+ { return llt_inplace<typename MatrixType::Scalar, Lower>::blocked(m)==-1; }
409
+ };
410
+
411
+ template<typename MatrixType> struct LLT_Traits<MatrixType,Upper>
412
+ {
413
+ typedef const TriangularView<const typename MatrixType::AdjointReturnType, Lower> MatrixL;
414
+ typedef const TriangularView<const MatrixType, Upper> MatrixU;
415
+ static inline MatrixL getL(const MatrixType& m) { return MatrixL(m.adjoint()); }
416
+ static inline MatrixU getU(const MatrixType& m) { return MatrixU(m); }
417
+ static bool inplace_decomposition(MatrixType& m)
418
+ { return llt_inplace<typename MatrixType::Scalar, Upper>::blocked(m)==-1; }
419
+ };
420
+
421
+ } // end namespace internal
422
+
423
+ /** Computes / recomputes the Cholesky decomposition A = LL^* = U^*U of \a matrix
424
+ *
425
+ * \returns a reference to *this
426
+ *
427
+ * Example: \include TutorialLinAlgComputeTwice.cpp
428
+ * Output: \verbinclude TutorialLinAlgComputeTwice.out
429
+ */
430
+ template<typename MatrixType, int _UpLo>
431
+ template<typename InputType>
432
+ LLT<MatrixType,_UpLo>& LLT<MatrixType,_UpLo>::compute(const EigenBase<InputType>& a)
433
+ {
434
+ check_template_parameters();
435
+
436
+ eigen_assert(a.rows()==a.cols());
437
+ const Index size = a.rows();
438
+ m_matrix.resize(size, size);
439
+ if (!internal::is_same_dense(m_matrix, a.derived()))
440
+ m_matrix = a.derived();
441
+
442
+ // Compute matrix L1 norm = max abs column sum.
443
+ m_l1_norm = RealScalar(0);
444
+ // TODO move this code to SelfAdjointView
445
+ for (Index col = 0; col < size; ++col) {
446
+ RealScalar abs_col_sum;
447
+ if (_UpLo == Lower)
448
+ abs_col_sum = m_matrix.col(col).tail(size - col).template lpNorm<1>() + m_matrix.row(col).head(col).template lpNorm<1>();
449
+ else
450
+ abs_col_sum = m_matrix.col(col).head(col).template lpNorm<1>() + m_matrix.row(col).tail(size - col).template lpNorm<1>();
451
+ if (abs_col_sum > m_l1_norm)
452
+ m_l1_norm = abs_col_sum;
453
+ }
454
+
455
+ m_isInitialized = true;
456
+ bool ok = Traits::inplace_decomposition(m_matrix);
457
+ m_info = ok ? Success : NumericalIssue;
458
+
459
+ return *this;
460
+ }
461
+
462
+ /** Performs a rank one update (or dowdate) of the current decomposition.
463
+ * If A = LL^* before the rank one update,
464
+ * then after it we have LL^* = A + sigma * v v^* where \a v must be a vector
465
+ * of same dimension.
466
+ */
467
+ template<typename _MatrixType, int _UpLo>
468
+ template<typename VectorType>
469
+ LLT<_MatrixType,_UpLo> & LLT<_MatrixType,_UpLo>::rankUpdate(const VectorType& v, const RealScalar& sigma)
470
+ {
471
+ EIGEN_STATIC_ASSERT_VECTOR_ONLY(VectorType);
472
+ eigen_assert(v.size()==m_matrix.cols());
473
+ eigen_assert(m_isInitialized);
474
+ if(internal::llt_inplace<typename MatrixType::Scalar, UpLo>::rankUpdate(m_matrix,v,sigma)>=0)
475
+ m_info = NumericalIssue;
476
+ else
477
+ m_info = Success;
478
+
479
+ return *this;
480
+ }
481
+
482
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
483
+ template<typename _MatrixType,int _UpLo>
484
+ template<typename RhsType, typename DstType>
485
+ void LLT<_MatrixType,_UpLo>::_solve_impl(const RhsType &rhs, DstType &dst) const
486
+ {
487
+ _solve_impl_transposed<true>(rhs, dst);
488
+ }
489
+
490
+ template<typename _MatrixType,int _UpLo>
491
+ template<bool Conjugate, typename RhsType, typename DstType>
492
+ void LLT<_MatrixType,_UpLo>::_solve_impl_transposed(const RhsType &rhs, DstType &dst) const
493
+ {
494
+ dst = rhs;
495
+
496
+ matrixL().template conjugateIf<!Conjugate>().solveInPlace(dst);
497
+ matrixU().template conjugateIf<!Conjugate>().solveInPlace(dst);
498
+ }
499
+ #endif
500
+
501
+ /** \internal use x = llt_object.solve(x);
502
+ *
503
+ * This is the \em in-place version of solve().
504
+ *
505
+ * \param bAndX represents both the right-hand side matrix b and result x.
506
+ *
507
+ * This version avoids a copy when the right hand side matrix b is not needed anymore.
508
+ *
509
+ * \warning The parameter is only marked 'const' to make the C++ compiler accept a temporary expression here.
510
+ * This function will const_cast it, so constness isn't honored here.
511
+ *
512
+ * \sa LLT::solve(), MatrixBase::llt()
513
+ */
514
+ template<typename MatrixType, int _UpLo>
515
+ template<typename Derived>
516
+ void LLT<MatrixType,_UpLo>::solveInPlace(const MatrixBase<Derived> &bAndX) const
517
+ {
518
+ eigen_assert(m_isInitialized && "LLT is not initialized.");
519
+ eigen_assert(m_matrix.rows()==bAndX.rows());
520
+ matrixL().solveInPlace(bAndX);
521
+ matrixU().solveInPlace(bAndX);
522
+ }
523
+
524
+ /** \returns the matrix represented by the decomposition,
525
+ * i.e., it returns the product: L L^*.
526
+ * This function is provided for debug purpose. */
527
+ template<typename MatrixType, int _UpLo>
528
+ MatrixType LLT<MatrixType,_UpLo>::reconstructedMatrix() const
529
+ {
530
+ eigen_assert(m_isInitialized && "LLT is not initialized.");
531
+ return matrixL() * matrixL().adjoint().toDenseMatrix();
532
+ }
533
+
534
+ /** \cholesky_module
535
+ * \returns the LLT decomposition of \c *this
536
+ * \sa SelfAdjointView::llt()
537
+ */
538
+ template<typename Derived>
539
+ inline const LLT<typename MatrixBase<Derived>::PlainObject>
540
+ MatrixBase<Derived>::llt() const
541
+ {
542
+ return LLT<PlainObject>(derived());
543
+ }
544
+
545
+ /** \cholesky_module
546
+ * \returns the LLT decomposition of \c *this
547
+ * \sa SelfAdjointView::llt()
548
+ */
549
+ template<typename MatrixType, unsigned int UpLo>
550
+ inline const LLT<typename SelfAdjointView<MatrixType, UpLo>::PlainObject, UpLo>
551
+ SelfAdjointView<MatrixType, UpLo>::llt() const
552
+ {
553
+ return LLT<PlainObject,UpLo>(m_matrix);
554
+ }
555
+
556
+ } // end namespace Eigen
557
+
558
+ #endif // EIGEN_LLT_H
@@ -0,0 +1,99 @@
1
+ /*
2
+ Copyright (c) 2011, Intel Corporation. All rights reserved.
3
+
4
+ Redistribution and use in source and binary forms, with or without modification,
5
+ are permitted provided that the following conditions are met:
6
+
7
+ * Redistributions of source code must retain the above copyright notice, this
8
+ list of conditions and the following disclaimer.
9
+ * Redistributions in binary form must reproduce the above copyright notice,
10
+ this list of conditions and the following disclaimer in the documentation
11
+ and/or other materials provided with the distribution.
12
+ * Neither the name of Intel Corporation nor the names of its contributors may
13
+ be used to endorse or promote products derived from this software without
14
+ specific prior written permission.
15
+
16
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
17
+ ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
18
+ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
19
+ DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
20
+ ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
21
+ (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
22
+ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
23
+ ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
24
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
25
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
26
+
27
+ ********************************************************************************
28
+ * Content : Eigen bindings to LAPACKe
29
+ * LLt decomposition based on LAPACKE_?potrf function.
30
+ ********************************************************************************
31
+ */
32
+
33
+ #ifndef EIGEN_LLT_LAPACKE_H
34
+ #define EIGEN_LLT_LAPACKE_H
35
+
36
+ namespace Eigen {
37
+
38
+ namespace internal {
39
+
40
+ template<typename Scalar> struct lapacke_llt;
41
+
42
+ #define EIGEN_LAPACKE_LLT(EIGTYPE, BLASTYPE, LAPACKE_PREFIX) \
43
+ template<> struct lapacke_llt<EIGTYPE> \
44
+ { \
45
+ template<typename MatrixType> \
46
+ static inline Index potrf(MatrixType& m, char uplo) \
47
+ { \
48
+ lapack_int matrix_order; \
49
+ lapack_int size, lda, info, StorageOrder; \
50
+ EIGTYPE* a; \
51
+ eigen_assert(m.rows()==m.cols()); \
52
+ /* Set up parameters for ?potrf */ \
53
+ size = convert_index<lapack_int>(m.rows()); \
54
+ StorageOrder = MatrixType::Flags&RowMajorBit?RowMajor:ColMajor; \
55
+ matrix_order = StorageOrder==RowMajor ? LAPACK_ROW_MAJOR : LAPACK_COL_MAJOR; \
56
+ a = &(m.coeffRef(0,0)); \
57
+ lda = convert_index<lapack_int>(m.outerStride()); \
58
+ \
59
+ info = LAPACKE_##LAPACKE_PREFIX##potrf( matrix_order, uplo, size, (BLASTYPE*)a, lda ); \
60
+ info = (info==0) ? -1 : info>0 ? info-1 : size; \
61
+ return info; \
62
+ } \
63
+ }; \
64
+ template<> struct llt_inplace<EIGTYPE, Lower> \
65
+ { \
66
+ template<typename MatrixType> \
67
+ static Index blocked(MatrixType& m) \
68
+ { \
69
+ return lapacke_llt<EIGTYPE>::potrf(m, 'L'); \
70
+ } \
71
+ template<typename MatrixType, typename VectorType> \
72
+ static Index rankUpdate(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma) \
73
+ { return Eigen::internal::llt_rank_update_lower(mat, vec, sigma); } \
74
+ }; \
75
+ template<> struct llt_inplace<EIGTYPE, Upper> \
76
+ { \
77
+ template<typename MatrixType> \
78
+ static Index blocked(MatrixType& m) \
79
+ { \
80
+ return lapacke_llt<EIGTYPE>::potrf(m, 'U'); \
81
+ } \
82
+ template<typename MatrixType, typename VectorType> \
83
+ static Index rankUpdate(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma) \
84
+ { \
85
+ Transpose<MatrixType> matt(mat); \
86
+ return llt_inplace<EIGTYPE, Lower>::rankUpdate(matt, vec.conjugate(), sigma); \
87
+ } \
88
+ };
89
+
90
+ EIGEN_LAPACKE_LLT(double, double, d)
91
+ EIGEN_LAPACKE_LLT(float, float, s)
92
+ EIGEN_LAPACKE_LLT(dcomplex, lapack_complex_double, z)
93
+ EIGEN_LAPACKE_LLT(scomplex, lapack_complex_float, c)
94
+
95
+ } // end namespace internal
96
+
97
+ } // end namespace Eigen
98
+
99
+ #endif // EIGEN_LLT_LAPACKE_H