umappp 0.1.2

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Files changed (395) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +25 -0
  3. data/README.md +110 -0
  4. data/ext/umappp/extconf.rb +25 -0
  5. data/ext/umappp/numo.hpp +867 -0
  6. data/ext/umappp/umappp.cpp +225 -0
  7. data/lib/umappp/version.rb +5 -0
  8. data/lib/umappp.rb +41 -0
  9. data/vendor/Eigen/Cholesky +45 -0
  10. data/vendor/Eigen/CholmodSupport +48 -0
  11. data/vendor/Eigen/Core +384 -0
  12. data/vendor/Eigen/Dense +7 -0
  13. data/vendor/Eigen/Eigen +2 -0
  14. data/vendor/Eigen/Eigenvalues +60 -0
  15. data/vendor/Eigen/Geometry +59 -0
  16. data/vendor/Eigen/Householder +29 -0
  17. data/vendor/Eigen/IterativeLinearSolvers +48 -0
  18. data/vendor/Eigen/Jacobi +32 -0
  19. data/vendor/Eigen/KLUSupport +41 -0
  20. data/vendor/Eigen/LU +47 -0
  21. data/vendor/Eigen/MetisSupport +35 -0
  22. data/vendor/Eigen/OrderingMethods +70 -0
  23. data/vendor/Eigen/PaStiXSupport +49 -0
  24. data/vendor/Eigen/PardisoSupport +35 -0
  25. data/vendor/Eigen/QR +50 -0
  26. data/vendor/Eigen/QtAlignedMalloc +39 -0
  27. data/vendor/Eigen/SPQRSupport +34 -0
  28. data/vendor/Eigen/SVD +50 -0
  29. data/vendor/Eigen/Sparse +34 -0
  30. data/vendor/Eigen/SparseCholesky +37 -0
  31. data/vendor/Eigen/SparseCore +69 -0
  32. data/vendor/Eigen/SparseLU +50 -0
  33. data/vendor/Eigen/SparseQR +36 -0
  34. data/vendor/Eigen/StdDeque +27 -0
  35. data/vendor/Eigen/StdList +26 -0
  36. data/vendor/Eigen/StdVector +27 -0
  37. data/vendor/Eigen/SuperLUSupport +64 -0
  38. data/vendor/Eigen/UmfPackSupport +40 -0
  39. data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
  40. data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
  41. data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  42. data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
  43. data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
  44. data/vendor/Eigen/src/Core/Array.h +417 -0
  45. data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
  46. data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
  47. data/vendor/Eigen/src/Core/Assign.h +90 -0
  48. data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
  49. data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
  50. data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
  51. data/vendor/Eigen/src/Core/Block.h +448 -0
  52. data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
  53. data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
  54. data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
  55. data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
  56. data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
  57. data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
  58. data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
  59. data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  60. data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  61. data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
  62. data/vendor/Eigen/src/Core/DenseBase.h +701 -0
  63. data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
  64. data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
  65. data/vendor/Eigen/src/Core/Diagonal.h +258 -0
  66. data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
  67. data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
  68. data/vendor/Eigen/src/Core/Dot.h +318 -0
  69. data/vendor/Eigen/src/Core/EigenBase.h +160 -0
  70. data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
  71. data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
  72. data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
  73. data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
  74. data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
  75. data/vendor/Eigen/src/Core/IO.h +258 -0
  76. data/vendor/Eigen/src/Core/IndexedView.h +237 -0
  77. data/vendor/Eigen/src/Core/Inverse.h +117 -0
  78. data/vendor/Eigen/src/Core/Map.h +171 -0
  79. data/vendor/Eigen/src/Core/MapBase.h +310 -0
  80. data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
  81. data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
  82. data/vendor/Eigen/src/Core/Matrix.h +565 -0
  83. data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
  84. data/vendor/Eigen/src/Core/NestByValue.h +85 -0
  85. data/vendor/Eigen/src/Core/NoAlias.h +109 -0
  86. data/vendor/Eigen/src/Core/NumTraits.h +335 -0
  87. data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  88. data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
  89. data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
  90. data/vendor/Eigen/src/Core/Product.h +191 -0
  91. data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
  92. data/vendor/Eigen/src/Core/Random.h +218 -0
  93. data/vendor/Eigen/src/Core/Redux.h +515 -0
  94. data/vendor/Eigen/src/Core/Ref.h +381 -0
  95. data/vendor/Eigen/src/Core/Replicate.h +142 -0
  96. data/vendor/Eigen/src/Core/Reshaped.h +454 -0
  97. data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
  98. data/vendor/Eigen/src/Core/Reverse.h +217 -0
  99. data/vendor/Eigen/src/Core/Select.h +164 -0
  100. data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
  101. data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  102. data/vendor/Eigen/src/Core/Solve.h +188 -0
  103. data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
  104. data/vendor/Eigen/src/Core/SolverBase.h +168 -0
  105. data/vendor/Eigen/src/Core/StableNorm.h +251 -0
  106. data/vendor/Eigen/src/Core/StlIterators.h +463 -0
  107. data/vendor/Eigen/src/Core/Stride.h +116 -0
  108. data/vendor/Eigen/src/Core/Swap.h +68 -0
  109. data/vendor/Eigen/src/Core/Transpose.h +464 -0
  110. data/vendor/Eigen/src/Core/Transpositions.h +386 -0
  111. data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
  112. data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
  113. data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
  114. data/vendor/Eigen/src/Core/Visitor.h +381 -0
  115. data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
  116. data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
  117. data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
  118. data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
  119. data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  120. data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
  121. data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
  122. data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  123. data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
  124. data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
  125. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  126. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  127. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  128. data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
  129. data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
  130. data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  131. data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
  132. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  133. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  134. data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
  135. data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
  136. data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  137. data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
  138. data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  139. data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  140. data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  141. data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  142. data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  143. data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  144. data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
  145. data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  146. data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
  147. data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
  148. data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  149. data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
  150. data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
  151. data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
  152. data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
  153. data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  154. data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  155. data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  156. data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  157. data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  158. data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  159. data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  160. data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  161. data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
  162. data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
  163. data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
  164. data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
  165. data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
  166. data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
  167. data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
  168. data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  169. data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
  170. data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
  171. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
  172. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
  173. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  174. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
  175. data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
  176. data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  177. data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
  178. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
  179. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
  180. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
  181. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  182. data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  183. data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
  184. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
  185. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
  186. data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  187. data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  188. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
  189. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
  190. data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
  191. data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
  192. data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  193. data/vendor/Eigen/src/Core/util/Constants.h +563 -0
  194. data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
  195. data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
  196. data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  197. data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
  198. data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
  199. data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
  200. data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
  201. data/vendor/Eigen/src/Core/util/Meta.h +812 -0
  202. data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
  203. data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
  204. data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  205. data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
  206. data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  207. data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
  208. data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  209. data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
  210. data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  211. data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  212. data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  213. data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  214. data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  215. data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  216. data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
  217. data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
  218. data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  219. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
  220. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  221. data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
  222. data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
  223. data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
  224. data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
  225. data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
  226. data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
  227. data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
  228. data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
  229. data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
  230. data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
  231. data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
  232. data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
  233. data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
  234. data/vendor/Eigen/src/Geometry/Translation.h +202 -0
  235. data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
  236. data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  237. data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
  238. data/vendor/Eigen/src/Householder/Householder.h +176 -0
  239. data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
  240. data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  241. data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
  242. data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
  243. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
  244. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
  245. data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
  246. data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
  247. data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
  248. data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
  249. data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  250. data/vendor/Eigen/src/LU/Determinant.h +117 -0
  251. data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
  252. data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
  253. data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
  254. data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  255. data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
  256. data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  257. data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
  258. data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
  259. data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
  260. data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  261. data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
  262. data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
  263. data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  264. data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
  265. data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
  266. data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
  267. data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  268. data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
  269. data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
  270. data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
  271. data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  272. data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
  273. data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  274. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
  275. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
  276. data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
  277. data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
  278. data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  279. data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  280. data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
  281. data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
  282. data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  283. data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
  284. data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
  285. data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
  286. data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
  287. data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  288. data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
  289. data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  290. data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
  291. data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
  292. data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
  293. data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  294. data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
  295. data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
  296. data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
  297. data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
  298. data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  299. data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  300. data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  301. data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  302. data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
  303. data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
  304. data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
  305. data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  306. data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
  307. data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  308. data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  309. data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  310. data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
  311. data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  312. data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  313. data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  314. data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  315. data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  316. data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  317. data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  318. data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  319. data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  320. data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  321. data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  322. data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  323. data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
  324. data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
  325. data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
  326. data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
  327. data/vendor/Eigen/src/StlSupport/details.h +84 -0
  328. data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
  329. data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
  330. data/vendor/Eigen/src/misc/Image.h +82 -0
  331. data/vendor/Eigen/src/misc/Kernel.h +79 -0
  332. data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
  333. data/vendor/Eigen/src/misc/blas.h +440 -0
  334. data/vendor/Eigen/src/misc/lapack.h +152 -0
  335. data/vendor/Eigen/src/misc/lapacke.h +16292 -0
  336. data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
  337. data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
  338. data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
  339. data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
  340. data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  341. data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
  342. data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  343. data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  344. data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
  345. data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
  346. data/vendor/aarand/aarand.hpp +114 -0
  347. data/vendor/annoy/annoylib.h +1495 -0
  348. data/vendor/annoy/kissrandom.h +120 -0
  349. data/vendor/annoy/mman.h +242 -0
  350. data/vendor/hnswlib/bruteforce.h +152 -0
  351. data/vendor/hnswlib/hnswalg.h +1192 -0
  352. data/vendor/hnswlib/hnswlib.h +108 -0
  353. data/vendor/hnswlib/space_ip.h +282 -0
  354. data/vendor/hnswlib/space_l2.h +281 -0
  355. data/vendor/hnswlib/visited_list_pool.h +79 -0
  356. data/vendor/irlba/irlba.hpp +575 -0
  357. data/vendor/irlba/lanczos.hpp +212 -0
  358. data/vendor/irlba/parallel.hpp +474 -0
  359. data/vendor/irlba/utils.hpp +224 -0
  360. data/vendor/irlba/wrappers.hpp +228 -0
  361. data/vendor/kmeans/Base.hpp +75 -0
  362. data/vendor/kmeans/Details.hpp +79 -0
  363. data/vendor/kmeans/HartiganWong.hpp +492 -0
  364. data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
  365. data/vendor/kmeans/InitializeNone.hpp +44 -0
  366. data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
  367. data/vendor/kmeans/InitializeRandom.hpp +91 -0
  368. data/vendor/kmeans/Kmeans.hpp +161 -0
  369. data/vendor/kmeans/Lloyd.hpp +134 -0
  370. data/vendor/kmeans/MiniBatch.hpp +269 -0
  371. data/vendor/kmeans/QuickSearch.hpp +179 -0
  372. data/vendor/kmeans/compute_centroids.hpp +32 -0
  373. data/vendor/kmeans/compute_wcss.hpp +27 -0
  374. data/vendor/kmeans/is_edge_case.hpp +42 -0
  375. data/vendor/kmeans/random.hpp +55 -0
  376. data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
  377. data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
  378. data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
  379. data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
  380. data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
  381. data/vendor/knncolle/knncolle.hpp +34 -0
  382. data/vendor/knncolle/utils/Base.hpp +100 -0
  383. data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
  384. data/vendor/knncolle/utils/distances.hpp +98 -0
  385. data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
  386. data/vendor/powerit/PowerIterations.hpp +157 -0
  387. data/vendor/umappp/NeighborList.hpp +37 -0
  388. data/vendor/umappp/Umap.hpp +662 -0
  389. data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
  390. data/vendor/umappp/find_ab.hpp +157 -0
  391. data/vendor/umappp/neighbor_similarities.hpp +136 -0
  392. data/vendor/umappp/optimize_layout.hpp +285 -0
  393. data/vendor/umappp/spectral_init.hpp +181 -0
  394. data/vendor/umappp/umappp.hpp +13 -0
  395. metadata +465 -0
@@ -0,0 +1,659 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2009-2014 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_SPARSE_SELFADJOINTVIEW_H
11
+ #define EIGEN_SPARSE_SELFADJOINTVIEW_H
12
+
13
+ namespace Eigen {
14
+
15
+ /** \ingroup SparseCore_Module
16
+ * \class SparseSelfAdjointView
17
+ *
18
+ * \brief Pseudo expression to manipulate a triangular sparse matrix as a selfadjoint matrix.
19
+ *
20
+ * \param MatrixType the type of the dense matrix storing the coefficients
21
+ * \param Mode can be either \c #Lower or \c #Upper
22
+ *
23
+ * This class is an expression of a sefladjoint matrix from a triangular part of a matrix
24
+ * with given dense storage of the coefficients. It is the return type of MatrixBase::selfadjointView()
25
+ * and most of the time this is the only way that it is used.
26
+ *
27
+ * \sa SparseMatrixBase::selfadjointView()
28
+ */
29
+ namespace internal {
30
+
31
+ template<typename MatrixType, unsigned int Mode>
32
+ struct traits<SparseSelfAdjointView<MatrixType,Mode> > : traits<MatrixType> {
33
+ };
34
+
35
+ template<int SrcMode,int DstMode,typename MatrixType,int DestOrder>
36
+ void permute_symm_to_symm(const MatrixType& mat, SparseMatrix<typename MatrixType::Scalar,DestOrder,typename MatrixType::StorageIndex>& _dest, const typename MatrixType::StorageIndex* perm = 0);
37
+
38
+ template<int Mode,typename MatrixType,int DestOrder>
39
+ void permute_symm_to_fullsymm(const MatrixType& mat, SparseMatrix<typename MatrixType::Scalar,DestOrder,typename MatrixType::StorageIndex>& _dest, const typename MatrixType::StorageIndex* perm = 0);
40
+
41
+ }
42
+
43
+ template<typename MatrixType, unsigned int _Mode> class SparseSelfAdjointView
44
+ : public EigenBase<SparseSelfAdjointView<MatrixType,_Mode> >
45
+ {
46
+ public:
47
+
48
+ enum {
49
+ Mode = _Mode,
50
+ TransposeMode = ((Mode & Upper) ? Lower : 0) | ((Mode & Lower) ? Upper : 0),
51
+ RowsAtCompileTime = internal::traits<SparseSelfAdjointView>::RowsAtCompileTime,
52
+ ColsAtCompileTime = internal::traits<SparseSelfAdjointView>::ColsAtCompileTime
53
+ };
54
+
55
+ typedef EigenBase<SparseSelfAdjointView> Base;
56
+ typedef typename MatrixType::Scalar Scalar;
57
+ typedef typename MatrixType::StorageIndex StorageIndex;
58
+ typedef Matrix<StorageIndex,Dynamic,1> VectorI;
59
+ typedef typename internal::ref_selector<MatrixType>::non_const_type MatrixTypeNested;
60
+ typedef typename internal::remove_all<MatrixTypeNested>::type _MatrixTypeNested;
61
+
62
+ explicit inline SparseSelfAdjointView(MatrixType& matrix) : m_matrix(matrix)
63
+ {
64
+ eigen_assert(rows()==cols() && "SelfAdjointView is only for squared matrices");
65
+ }
66
+
67
+ inline Index rows() const { return m_matrix.rows(); }
68
+ inline Index cols() const { return m_matrix.cols(); }
69
+
70
+ /** \internal \returns a reference to the nested matrix */
71
+ const _MatrixTypeNested& matrix() const { return m_matrix; }
72
+ typename internal::remove_reference<MatrixTypeNested>::type& matrix() { return m_matrix; }
73
+
74
+ /** \returns an expression of the matrix product between a sparse self-adjoint matrix \c *this and a sparse matrix \a rhs.
75
+ *
76
+ * Note that there is no algorithmic advantage of performing such a product compared to a general sparse-sparse matrix product.
77
+ * Indeed, the SparseSelfadjointView operand is first copied into a temporary SparseMatrix before computing the product.
78
+ */
79
+ template<typename OtherDerived>
80
+ Product<SparseSelfAdjointView, OtherDerived>
81
+ operator*(const SparseMatrixBase<OtherDerived>& rhs) const
82
+ {
83
+ return Product<SparseSelfAdjointView, OtherDerived>(*this, rhs.derived());
84
+ }
85
+
86
+ /** \returns an expression of the matrix product between a sparse matrix \a lhs and a sparse self-adjoint matrix \a rhs.
87
+ *
88
+ * Note that there is no algorithmic advantage of performing such a product compared to a general sparse-sparse matrix product.
89
+ * Indeed, the SparseSelfadjointView operand is first copied into a temporary SparseMatrix before computing the product.
90
+ */
91
+ template<typename OtherDerived> friend
92
+ Product<OtherDerived, SparseSelfAdjointView>
93
+ operator*(const SparseMatrixBase<OtherDerived>& lhs, const SparseSelfAdjointView& rhs)
94
+ {
95
+ return Product<OtherDerived, SparseSelfAdjointView>(lhs.derived(), rhs);
96
+ }
97
+
98
+ /** Efficient sparse self-adjoint matrix times dense vector/matrix product */
99
+ template<typename OtherDerived>
100
+ Product<SparseSelfAdjointView,OtherDerived>
101
+ operator*(const MatrixBase<OtherDerived>& rhs) const
102
+ {
103
+ return Product<SparseSelfAdjointView,OtherDerived>(*this, rhs.derived());
104
+ }
105
+
106
+ /** Efficient dense vector/matrix times sparse self-adjoint matrix product */
107
+ template<typename OtherDerived> friend
108
+ Product<OtherDerived,SparseSelfAdjointView>
109
+ operator*(const MatrixBase<OtherDerived>& lhs, const SparseSelfAdjointView& rhs)
110
+ {
111
+ return Product<OtherDerived,SparseSelfAdjointView>(lhs.derived(), rhs);
112
+ }
113
+
114
+ /** Perform a symmetric rank K update of the selfadjoint matrix \c *this:
115
+ * \f$ this = this + \alpha ( u u^* ) \f$ where \a u is a vector or matrix.
116
+ *
117
+ * \returns a reference to \c *this
118
+ *
119
+ * To perform \f$ this = this + \alpha ( u^* u ) \f$ you can simply
120
+ * call this function with u.adjoint().
121
+ */
122
+ template<typename DerivedU>
123
+ SparseSelfAdjointView& rankUpdate(const SparseMatrixBase<DerivedU>& u, const Scalar& alpha = Scalar(1));
124
+
125
+ /** \returns an expression of P H P^-1 */
126
+ // TODO implement twists in a more evaluator friendly fashion
127
+ SparseSymmetricPermutationProduct<_MatrixTypeNested,Mode> twistedBy(const PermutationMatrix<Dynamic,Dynamic,StorageIndex>& perm) const
128
+ {
129
+ return SparseSymmetricPermutationProduct<_MatrixTypeNested,Mode>(m_matrix, perm);
130
+ }
131
+
132
+ template<typename SrcMatrixType,int SrcMode>
133
+ SparseSelfAdjointView& operator=(const SparseSymmetricPermutationProduct<SrcMatrixType,SrcMode>& permutedMatrix)
134
+ {
135
+ internal::call_assignment_no_alias_no_transpose(*this, permutedMatrix);
136
+ return *this;
137
+ }
138
+
139
+ SparseSelfAdjointView& operator=(const SparseSelfAdjointView& src)
140
+ {
141
+ PermutationMatrix<Dynamic,Dynamic,StorageIndex> pnull;
142
+ return *this = src.twistedBy(pnull);
143
+ }
144
+
145
+ // Since we override the copy-assignment operator, we need to explicitly re-declare the copy-constructor
146
+ EIGEN_DEFAULT_COPY_CONSTRUCTOR(SparseSelfAdjointView)
147
+
148
+ template<typename SrcMatrixType,unsigned int SrcMode>
149
+ SparseSelfAdjointView& operator=(const SparseSelfAdjointView<SrcMatrixType,SrcMode>& src)
150
+ {
151
+ PermutationMatrix<Dynamic,Dynamic,StorageIndex> pnull;
152
+ return *this = src.twistedBy(pnull);
153
+ }
154
+
155
+ void resize(Index rows, Index cols)
156
+ {
157
+ EIGEN_ONLY_USED_FOR_DEBUG(rows);
158
+ EIGEN_ONLY_USED_FOR_DEBUG(cols);
159
+ eigen_assert(rows == this->rows() && cols == this->cols()
160
+ && "SparseSelfadjointView::resize() does not actually allow to resize.");
161
+ }
162
+
163
+ protected:
164
+
165
+ MatrixTypeNested m_matrix;
166
+ //mutable VectorI m_countPerRow;
167
+ //mutable VectorI m_countPerCol;
168
+ private:
169
+ template<typename Dest> void evalTo(Dest &) const;
170
+ };
171
+
172
+ /***************************************************************************
173
+ * Implementation of SparseMatrixBase methods
174
+ ***************************************************************************/
175
+
176
+ template<typename Derived>
177
+ template<unsigned int UpLo>
178
+ typename SparseMatrixBase<Derived>::template ConstSelfAdjointViewReturnType<UpLo>::Type SparseMatrixBase<Derived>::selfadjointView() const
179
+ {
180
+ return SparseSelfAdjointView<const Derived, UpLo>(derived());
181
+ }
182
+
183
+ template<typename Derived>
184
+ template<unsigned int UpLo>
185
+ typename SparseMatrixBase<Derived>::template SelfAdjointViewReturnType<UpLo>::Type SparseMatrixBase<Derived>::selfadjointView()
186
+ {
187
+ return SparseSelfAdjointView<Derived, UpLo>(derived());
188
+ }
189
+
190
+ /***************************************************************************
191
+ * Implementation of SparseSelfAdjointView methods
192
+ ***************************************************************************/
193
+
194
+ template<typename MatrixType, unsigned int Mode>
195
+ template<typename DerivedU>
196
+ SparseSelfAdjointView<MatrixType,Mode>&
197
+ SparseSelfAdjointView<MatrixType,Mode>::rankUpdate(const SparseMatrixBase<DerivedU>& u, const Scalar& alpha)
198
+ {
199
+ SparseMatrix<Scalar,(MatrixType::Flags&RowMajorBit)?RowMajor:ColMajor> tmp = u * u.adjoint();
200
+ if(alpha==Scalar(0))
201
+ m_matrix = tmp.template triangularView<Mode>();
202
+ else
203
+ m_matrix += alpha * tmp.template triangularView<Mode>();
204
+
205
+ return *this;
206
+ }
207
+
208
+ namespace internal {
209
+
210
+ // TODO currently a selfadjoint expression has the form SelfAdjointView<.,.>
211
+ // in the future selfadjoint-ness should be defined by the expression traits
212
+ // such that Transpose<SelfAdjointView<.,.> > is valid. (currently TriangularBase::transpose() is overloaded to make it work)
213
+ template<typename MatrixType, unsigned int Mode>
214
+ struct evaluator_traits<SparseSelfAdjointView<MatrixType,Mode> >
215
+ {
216
+ typedef typename storage_kind_to_evaluator_kind<typename MatrixType::StorageKind>::Kind Kind;
217
+ typedef SparseSelfAdjointShape Shape;
218
+ };
219
+
220
+ struct SparseSelfAdjoint2Sparse {};
221
+
222
+ template<> struct AssignmentKind<SparseShape,SparseSelfAdjointShape> { typedef SparseSelfAdjoint2Sparse Kind; };
223
+ template<> struct AssignmentKind<SparseSelfAdjointShape,SparseShape> { typedef Sparse2Sparse Kind; };
224
+
225
+ template< typename DstXprType, typename SrcXprType, typename Functor>
226
+ struct Assignment<DstXprType, SrcXprType, Functor, SparseSelfAdjoint2Sparse>
227
+ {
228
+ typedef typename DstXprType::StorageIndex StorageIndex;
229
+ typedef internal::assign_op<typename DstXprType::Scalar,typename SrcXprType::Scalar> AssignOpType;
230
+
231
+ template<typename DestScalar,int StorageOrder>
232
+ static void run(SparseMatrix<DestScalar,StorageOrder,StorageIndex> &dst, const SrcXprType &src, const AssignOpType&/*func*/)
233
+ {
234
+ internal::permute_symm_to_fullsymm<SrcXprType::Mode>(src.matrix(), dst);
235
+ }
236
+
237
+ // FIXME: the handling of += and -= in sparse matrices should be cleanup so that next two overloads could be reduced to:
238
+ template<typename DestScalar,int StorageOrder,typename AssignFunc>
239
+ static void run(SparseMatrix<DestScalar,StorageOrder,StorageIndex> &dst, const SrcXprType &src, const AssignFunc& func)
240
+ {
241
+ SparseMatrix<DestScalar,StorageOrder,StorageIndex> tmp(src.rows(),src.cols());
242
+ run(tmp, src, AssignOpType());
243
+ call_assignment_no_alias_no_transpose(dst, tmp, func);
244
+ }
245
+
246
+ template<typename DestScalar,int StorageOrder>
247
+ static void run(SparseMatrix<DestScalar,StorageOrder,StorageIndex> &dst, const SrcXprType &src,
248
+ const internal::add_assign_op<typename DstXprType::Scalar,typename SrcXprType::Scalar>& /* func */)
249
+ {
250
+ SparseMatrix<DestScalar,StorageOrder,StorageIndex> tmp(src.rows(),src.cols());
251
+ run(tmp, src, AssignOpType());
252
+ dst += tmp;
253
+ }
254
+
255
+ template<typename DestScalar,int StorageOrder>
256
+ static void run(SparseMatrix<DestScalar,StorageOrder,StorageIndex> &dst, const SrcXprType &src,
257
+ const internal::sub_assign_op<typename DstXprType::Scalar,typename SrcXprType::Scalar>& /* func */)
258
+ {
259
+ SparseMatrix<DestScalar,StorageOrder,StorageIndex> tmp(src.rows(),src.cols());
260
+ run(tmp, src, AssignOpType());
261
+ dst -= tmp;
262
+ }
263
+
264
+ template<typename DestScalar>
265
+ static void run(DynamicSparseMatrix<DestScalar,ColMajor,StorageIndex>& dst, const SrcXprType &src, const AssignOpType&/*func*/)
266
+ {
267
+ // TODO directly evaluate into dst;
268
+ SparseMatrix<DestScalar,ColMajor,StorageIndex> tmp(dst.rows(),dst.cols());
269
+ internal::permute_symm_to_fullsymm<SrcXprType::Mode>(src.matrix(), tmp);
270
+ dst = tmp;
271
+ }
272
+ };
273
+
274
+ } // end namespace internal
275
+
276
+ /***************************************************************************
277
+ * Implementation of sparse self-adjoint time dense matrix
278
+ ***************************************************************************/
279
+
280
+ namespace internal {
281
+
282
+ template<int Mode, typename SparseLhsType, typename DenseRhsType, typename DenseResType, typename AlphaType>
283
+ inline void sparse_selfadjoint_time_dense_product(const SparseLhsType& lhs, const DenseRhsType& rhs, DenseResType& res, const AlphaType& alpha)
284
+ {
285
+ EIGEN_ONLY_USED_FOR_DEBUG(alpha);
286
+
287
+ typedef typename internal::nested_eval<SparseLhsType,DenseRhsType::MaxColsAtCompileTime>::type SparseLhsTypeNested;
288
+ typedef typename internal::remove_all<SparseLhsTypeNested>::type SparseLhsTypeNestedCleaned;
289
+ typedef evaluator<SparseLhsTypeNestedCleaned> LhsEval;
290
+ typedef typename LhsEval::InnerIterator LhsIterator;
291
+ typedef typename SparseLhsType::Scalar LhsScalar;
292
+
293
+ enum {
294
+ LhsIsRowMajor = (LhsEval::Flags&RowMajorBit)==RowMajorBit,
295
+ ProcessFirstHalf =
296
+ ((Mode&(Upper|Lower))==(Upper|Lower))
297
+ || ( (Mode&Upper) && !LhsIsRowMajor)
298
+ || ( (Mode&Lower) && LhsIsRowMajor),
299
+ ProcessSecondHalf = !ProcessFirstHalf
300
+ };
301
+
302
+ SparseLhsTypeNested lhs_nested(lhs);
303
+ LhsEval lhsEval(lhs_nested);
304
+
305
+ // work on one column at once
306
+ for (Index k=0; k<rhs.cols(); ++k)
307
+ {
308
+ for (Index j=0; j<lhs.outerSize(); ++j)
309
+ {
310
+ LhsIterator i(lhsEval,j);
311
+ // handle diagonal coeff
312
+ if (ProcessSecondHalf)
313
+ {
314
+ while (i && i.index()<j) ++i;
315
+ if(i && i.index()==j)
316
+ {
317
+ res.coeffRef(j,k) += alpha * i.value() * rhs.coeff(j,k);
318
+ ++i;
319
+ }
320
+ }
321
+
322
+ // premultiplied rhs for scatters
323
+ typename ScalarBinaryOpTraits<AlphaType, typename DenseRhsType::Scalar>::ReturnType rhs_j(alpha*rhs(j,k));
324
+ // accumulator for partial scalar product
325
+ typename DenseResType::Scalar res_j(0);
326
+ for(; (ProcessFirstHalf ? i && i.index() < j : i) ; ++i)
327
+ {
328
+ LhsScalar lhs_ij = i.value();
329
+ if(!LhsIsRowMajor) lhs_ij = numext::conj(lhs_ij);
330
+ res_j += lhs_ij * rhs.coeff(i.index(),k);
331
+ res(i.index(),k) += numext::conj(lhs_ij) * rhs_j;
332
+ }
333
+ res.coeffRef(j,k) += alpha * res_j;
334
+
335
+ // handle diagonal coeff
336
+ if (ProcessFirstHalf && i && (i.index()==j))
337
+ res.coeffRef(j,k) += alpha * i.value() * rhs.coeff(j,k);
338
+ }
339
+ }
340
+ }
341
+
342
+
343
+ template<typename LhsView, typename Rhs, int ProductType>
344
+ struct generic_product_impl<LhsView, Rhs, SparseSelfAdjointShape, DenseShape, ProductType>
345
+ : generic_product_impl_base<LhsView, Rhs, generic_product_impl<LhsView, Rhs, SparseSelfAdjointShape, DenseShape, ProductType> >
346
+ {
347
+ template<typename Dest>
348
+ static void scaleAndAddTo(Dest& dst, const LhsView& lhsView, const Rhs& rhs, const typename Dest::Scalar& alpha)
349
+ {
350
+ typedef typename LhsView::_MatrixTypeNested Lhs;
351
+ typedef typename nested_eval<Lhs,Dynamic>::type LhsNested;
352
+ typedef typename nested_eval<Rhs,Dynamic>::type RhsNested;
353
+ LhsNested lhsNested(lhsView.matrix());
354
+ RhsNested rhsNested(rhs);
355
+
356
+ internal::sparse_selfadjoint_time_dense_product<LhsView::Mode>(lhsNested, rhsNested, dst, alpha);
357
+ }
358
+ };
359
+
360
+ template<typename Lhs, typename RhsView, int ProductType>
361
+ struct generic_product_impl<Lhs, RhsView, DenseShape, SparseSelfAdjointShape, ProductType>
362
+ : generic_product_impl_base<Lhs, RhsView, generic_product_impl<Lhs, RhsView, DenseShape, SparseSelfAdjointShape, ProductType> >
363
+ {
364
+ template<typename Dest>
365
+ static void scaleAndAddTo(Dest& dst, const Lhs& lhs, const RhsView& rhsView, const typename Dest::Scalar& alpha)
366
+ {
367
+ typedef typename RhsView::_MatrixTypeNested Rhs;
368
+ typedef typename nested_eval<Lhs,Dynamic>::type LhsNested;
369
+ typedef typename nested_eval<Rhs,Dynamic>::type RhsNested;
370
+ LhsNested lhsNested(lhs);
371
+ RhsNested rhsNested(rhsView.matrix());
372
+
373
+ // transpose everything
374
+ Transpose<Dest> dstT(dst);
375
+ internal::sparse_selfadjoint_time_dense_product<RhsView::TransposeMode>(rhsNested.transpose(), lhsNested.transpose(), dstT, alpha);
376
+ }
377
+ };
378
+
379
+ // NOTE: these two overloads are needed to evaluate the sparse selfadjoint view into a full sparse matrix
380
+ // TODO: maybe the copy could be handled by generic_product_impl so that these overloads would not be needed anymore
381
+
382
+ template<typename LhsView, typename Rhs, int ProductTag>
383
+ struct product_evaluator<Product<LhsView, Rhs, DefaultProduct>, ProductTag, SparseSelfAdjointShape, SparseShape>
384
+ : public evaluator<typename Product<typename Rhs::PlainObject, Rhs, DefaultProduct>::PlainObject>
385
+ {
386
+ typedef Product<LhsView, Rhs, DefaultProduct> XprType;
387
+ typedef typename XprType::PlainObject PlainObject;
388
+ typedef evaluator<PlainObject> Base;
389
+
390
+ product_evaluator(const XprType& xpr)
391
+ : m_lhs(xpr.lhs()), m_result(xpr.rows(), xpr.cols())
392
+ {
393
+ ::new (static_cast<Base*>(this)) Base(m_result);
394
+ generic_product_impl<typename Rhs::PlainObject, Rhs, SparseShape, SparseShape, ProductTag>::evalTo(m_result, m_lhs, xpr.rhs());
395
+ }
396
+
397
+ protected:
398
+ typename Rhs::PlainObject m_lhs;
399
+ PlainObject m_result;
400
+ };
401
+
402
+ template<typename Lhs, typename RhsView, int ProductTag>
403
+ struct product_evaluator<Product<Lhs, RhsView, DefaultProduct>, ProductTag, SparseShape, SparseSelfAdjointShape>
404
+ : public evaluator<typename Product<Lhs, typename Lhs::PlainObject, DefaultProduct>::PlainObject>
405
+ {
406
+ typedef Product<Lhs, RhsView, DefaultProduct> XprType;
407
+ typedef typename XprType::PlainObject PlainObject;
408
+ typedef evaluator<PlainObject> Base;
409
+
410
+ product_evaluator(const XprType& xpr)
411
+ : m_rhs(xpr.rhs()), m_result(xpr.rows(), xpr.cols())
412
+ {
413
+ ::new (static_cast<Base*>(this)) Base(m_result);
414
+ generic_product_impl<Lhs, typename Lhs::PlainObject, SparseShape, SparseShape, ProductTag>::evalTo(m_result, xpr.lhs(), m_rhs);
415
+ }
416
+
417
+ protected:
418
+ typename Lhs::PlainObject m_rhs;
419
+ PlainObject m_result;
420
+ };
421
+
422
+ } // namespace internal
423
+
424
+ /***************************************************************************
425
+ * Implementation of symmetric copies and permutations
426
+ ***************************************************************************/
427
+ namespace internal {
428
+
429
+ template<int Mode,typename MatrixType,int DestOrder>
430
+ void permute_symm_to_fullsymm(const MatrixType& mat, SparseMatrix<typename MatrixType::Scalar,DestOrder,typename MatrixType::StorageIndex>& _dest, const typename MatrixType::StorageIndex* perm)
431
+ {
432
+ typedef typename MatrixType::StorageIndex StorageIndex;
433
+ typedef typename MatrixType::Scalar Scalar;
434
+ typedef SparseMatrix<Scalar,DestOrder,StorageIndex> Dest;
435
+ typedef Matrix<StorageIndex,Dynamic,1> VectorI;
436
+ typedef evaluator<MatrixType> MatEval;
437
+ typedef typename evaluator<MatrixType>::InnerIterator MatIterator;
438
+
439
+ MatEval matEval(mat);
440
+ Dest& dest(_dest.derived());
441
+ enum {
442
+ StorageOrderMatch = int(Dest::IsRowMajor) == int(MatrixType::IsRowMajor)
443
+ };
444
+
445
+ Index size = mat.rows();
446
+ VectorI count;
447
+ count.resize(size);
448
+ count.setZero();
449
+ dest.resize(size,size);
450
+ for(Index j = 0; j<size; ++j)
451
+ {
452
+ Index jp = perm ? perm[j] : j;
453
+ for(MatIterator it(matEval,j); it; ++it)
454
+ {
455
+ Index i = it.index();
456
+ Index r = it.row();
457
+ Index c = it.col();
458
+ Index ip = perm ? perm[i] : i;
459
+ if(Mode==int(Upper|Lower))
460
+ count[StorageOrderMatch ? jp : ip]++;
461
+ else if(r==c)
462
+ count[ip]++;
463
+ else if(( Mode==Lower && r>c) || ( Mode==Upper && r<c))
464
+ {
465
+ count[ip]++;
466
+ count[jp]++;
467
+ }
468
+ }
469
+ }
470
+ Index nnz = count.sum();
471
+
472
+ // reserve space
473
+ dest.resizeNonZeros(nnz);
474
+ dest.outerIndexPtr()[0] = 0;
475
+ for(Index j=0; j<size; ++j)
476
+ dest.outerIndexPtr()[j+1] = dest.outerIndexPtr()[j] + count[j];
477
+ for(Index j=0; j<size; ++j)
478
+ count[j] = dest.outerIndexPtr()[j];
479
+
480
+ // copy data
481
+ for(StorageIndex j = 0; j<size; ++j)
482
+ {
483
+ for(MatIterator it(matEval,j); it; ++it)
484
+ {
485
+ StorageIndex i = internal::convert_index<StorageIndex>(it.index());
486
+ Index r = it.row();
487
+ Index c = it.col();
488
+
489
+ StorageIndex jp = perm ? perm[j] : j;
490
+ StorageIndex ip = perm ? perm[i] : i;
491
+
492
+ if(Mode==int(Upper|Lower))
493
+ {
494
+ Index k = count[StorageOrderMatch ? jp : ip]++;
495
+ dest.innerIndexPtr()[k] = StorageOrderMatch ? ip : jp;
496
+ dest.valuePtr()[k] = it.value();
497
+ }
498
+ else if(r==c)
499
+ {
500
+ Index k = count[ip]++;
501
+ dest.innerIndexPtr()[k] = ip;
502
+ dest.valuePtr()[k] = it.value();
503
+ }
504
+ else if(( (Mode&Lower)==Lower && r>c) || ( (Mode&Upper)==Upper && r<c))
505
+ {
506
+ if(!StorageOrderMatch)
507
+ std::swap(ip,jp);
508
+ Index k = count[jp]++;
509
+ dest.innerIndexPtr()[k] = ip;
510
+ dest.valuePtr()[k] = it.value();
511
+ k = count[ip]++;
512
+ dest.innerIndexPtr()[k] = jp;
513
+ dest.valuePtr()[k] = numext::conj(it.value());
514
+ }
515
+ }
516
+ }
517
+ }
518
+
519
+ template<int _SrcMode,int _DstMode,typename MatrixType,int DstOrder>
520
+ void permute_symm_to_symm(const MatrixType& mat, SparseMatrix<typename MatrixType::Scalar,DstOrder,typename MatrixType::StorageIndex>& _dest, const typename MatrixType::StorageIndex* perm)
521
+ {
522
+ typedef typename MatrixType::StorageIndex StorageIndex;
523
+ typedef typename MatrixType::Scalar Scalar;
524
+ SparseMatrix<Scalar,DstOrder,StorageIndex>& dest(_dest.derived());
525
+ typedef Matrix<StorageIndex,Dynamic,1> VectorI;
526
+ typedef evaluator<MatrixType> MatEval;
527
+ typedef typename evaluator<MatrixType>::InnerIterator MatIterator;
528
+
529
+ enum {
530
+ SrcOrder = MatrixType::IsRowMajor ? RowMajor : ColMajor,
531
+ StorageOrderMatch = int(SrcOrder) == int(DstOrder),
532
+ DstMode = DstOrder==RowMajor ? (_DstMode==Upper ? Lower : Upper) : _DstMode,
533
+ SrcMode = SrcOrder==RowMajor ? (_SrcMode==Upper ? Lower : Upper) : _SrcMode
534
+ };
535
+
536
+ MatEval matEval(mat);
537
+
538
+ Index size = mat.rows();
539
+ VectorI count(size);
540
+ count.setZero();
541
+ dest.resize(size,size);
542
+ for(StorageIndex j = 0; j<size; ++j)
543
+ {
544
+ StorageIndex jp = perm ? perm[j] : j;
545
+ for(MatIterator it(matEval,j); it; ++it)
546
+ {
547
+ StorageIndex i = it.index();
548
+ if((int(SrcMode)==int(Lower) && i<j) || (int(SrcMode)==int(Upper) && i>j))
549
+ continue;
550
+
551
+ StorageIndex ip = perm ? perm[i] : i;
552
+ count[int(DstMode)==int(Lower) ? (std::min)(ip,jp) : (std::max)(ip,jp)]++;
553
+ }
554
+ }
555
+ dest.outerIndexPtr()[0] = 0;
556
+ for(Index j=0; j<size; ++j)
557
+ dest.outerIndexPtr()[j+1] = dest.outerIndexPtr()[j] + count[j];
558
+ dest.resizeNonZeros(dest.outerIndexPtr()[size]);
559
+ for(Index j=0; j<size; ++j)
560
+ count[j] = dest.outerIndexPtr()[j];
561
+
562
+ for(StorageIndex j = 0; j<size; ++j)
563
+ {
564
+
565
+ for(MatIterator it(matEval,j); it; ++it)
566
+ {
567
+ StorageIndex i = it.index();
568
+ if((int(SrcMode)==int(Lower) && i<j) || (int(SrcMode)==int(Upper) && i>j))
569
+ continue;
570
+
571
+ StorageIndex jp = perm ? perm[j] : j;
572
+ StorageIndex ip = perm? perm[i] : i;
573
+
574
+ Index k = count[int(DstMode)==int(Lower) ? (std::min)(ip,jp) : (std::max)(ip,jp)]++;
575
+ dest.innerIndexPtr()[k] = int(DstMode)==int(Lower) ? (std::max)(ip,jp) : (std::min)(ip,jp);
576
+
577
+ if(!StorageOrderMatch) std::swap(ip,jp);
578
+ if( ((int(DstMode)==int(Lower) && ip<jp) || (int(DstMode)==int(Upper) && ip>jp)))
579
+ dest.valuePtr()[k] = numext::conj(it.value());
580
+ else
581
+ dest.valuePtr()[k] = it.value();
582
+ }
583
+ }
584
+ }
585
+
586
+ }
587
+
588
+ // TODO implement twists in a more evaluator friendly fashion
589
+
590
+ namespace internal {
591
+
592
+ template<typename MatrixType, int Mode>
593
+ struct traits<SparseSymmetricPermutationProduct<MatrixType,Mode> > : traits<MatrixType> {
594
+ };
595
+
596
+ }
597
+
598
+ template<typename MatrixType,int Mode>
599
+ class SparseSymmetricPermutationProduct
600
+ : public EigenBase<SparseSymmetricPermutationProduct<MatrixType,Mode> >
601
+ {
602
+ public:
603
+ typedef typename MatrixType::Scalar Scalar;
604
+ typedef typename MatrixType::StorageIndex StorageIndex;
605
+ enum {
606
+ RowsAtCompileTime = internal::traits<SparseSymmetricPermutationProduct>::RowsAtCompileTime,
607
+ ColsAtCompileTime = internal::traits<SparseSymmetricPermutationProduct>::ColsAtCompileTime
608
+ };
609
+ protected:
610
+ typedef PermutationMatrix<Dynamic,Dynamic,StorageIndex> Perm;
611
+ public:
612
+ typedef Matrix<StorageIndex,Dynamic,1> VectorI;
613
+ typedef typename MatrixType::Nested MatrixTypeNested;
614
+ typedef typename internal::remove_all<MatrixTypeNested>::type NestedExpression;
615
+
616
+ SparseSymmetricPermutationProduct(const MatrixType& mat, const Perm& perm)
617
+ : m_matrix(mat), m_perm(perm)
618
+ {}
619
+
620
+ inline Index rows() const { return m_matrix.rows(); }
621
+ inline Index cols() const { return m_matrix.cols(); }
622
+
623
+ const NestedExpression& matrix() const { return m_matrix; }
624
+ const Perm& perm() const { return m_perm; }
625
+
626
+ protected:
627
+ MatrixTypeNested m_matrix;
628
+ const Perm& m_perm;
629
+
630
+ };
631
+
632
+ namespace internal {
633
+
634
+ template<typename DstXprType, typename MatrixType, int Mode, typename Scalar>
635
+ struct Assignment<DstXprType, SparseSymmetricPermutationProduct<MatrixType,Mode>, internal::assign_op<Scalar,typename MatrixType::Scalar>, Sparse2Sparse>
636
+ {
637
+ typedef SparseSymmetricPermutationProduct<MatrixType,Mode> SrcXprType;
638
+ typedef typename DstXprType::StorageIndex DstIndex;
639
+ template<int Options>
640
+ static void run(SparseMatrix<Scalar,Options,DstIndex> &dst, const SrcXprType &src, const internal::assign_op<Scalar,typename MatrixType::Scalar> &)
641
+ {
642
+ // internal::permute_symm_to_fullsymm<Mode>(m_matrix,_dest,m_perm.indices().data());
643
+ SparseMatrix<Scalar,(Options&RowMajor)==RowMajor ? ColMajor : RowMajor, DstIndex> tmp;
644
+ internal::permute_symm_to_fullsymm<Mode>(src.matrix(),tmp,src.perm().indices().data());
645
+ dst = tmp;
646
+ }
647
+
648
+ template<typename DestType,unsigned int DestMode>
649
+ static void run(SparseSelfAdjointView<DestType,DestMode>& dst, const SrcXprType &src, const internal::assign_op<Scalar,typename MatrixType::Scalar> &)
650
+ {
651
+ internal::permute_symm_to_symm<Mode,DestMode>(src.matrix(),dst.matrix(),src.perm().indices().data());
652
+ }
653
+ };
654
+
655
+ } // end namespace internal
656
+
657
+ } // end namespace Eigen
658
+
659
+ #endif // EIGEN_SPARSE_SELFADJOINTVIEW_H