umappp 0.1.2

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Files changed (395) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +25 -0
  3. data/README.md +110 -0
  4. data/ext/umappp/extconf.rb +25 -0
  5. data/ext/umappp/numo.hpp +867 -0
  6. data/ext/umappp/umappp.cpp +225 -0
  7. data/lib/umappp/version.rb +5 -0
  8. data/lib/umappp.rb +41 -0
  9. data/vendor/Eigen/Cholesky +45 -0
  10. data/vendor/Eigen/CholmodSupport +48 -0
  11. data/vendor/Eigen/Core +384 -0
  12. data/vendor/Eigen/Dense +7 -0
  13. data/vendor/Eigen/Eigen +2 -0
  14. data/vendor/Eigen/Eigenvalues +60 -0
  15. data/vendor/Eigen/Geometry +59 -0
  16. data/vendor/Eigen/Householder +29 -0
  17. data/vendor/Eigen/IterativeLinearSolvers +48 -0
  18. data/vendor/Eigen/Jacobi +32 -0
  19. data/vendor/Eigen/KLUSupport +41 -0
  20. data/vendor/Eigen/LU +47 -0
  21. data/vendor/Eigen/MetisSupport +35 -0
  22. data/vendor/Eigen/OrderingMethods +70 -0
  23. data/vendor/Eigen/PaStiXSupport +49 -0
  24. data/vendor/Eigen/PardisoSupport +35 -0
  25. data/vendor/Eigen/QR +50 -0
  26. data/vendor/Eigen/QtAlignedMalloc +39 -0
  27. data/vendor/Eigen/SPQRSupport +34 -0
  28. data/vendor/Eigen/SVD +50 -0
  29. data/vendor/Eigen/Sparse +34 -0
  30. data/vendor/Eigen/SparseCholesky +37 -0
  31. data/vendor/Eigen/SparseCore +69 -0
  32. data/vendor/Eigen/SparseLU +50 -0
  33. data/vendor/Eigen/SparseQR +36 -0
  34. data/vendor/Eigen/StdDeque +27 -0
  35. data/vendor/Eigen/StdList +26 -0
  36. data/vendor/Eigen/StdVector +27 -0
  37. data/vendor/Eigen/SuperLUSupport +64 -0
  38. data/vendor/Eigen/UmfPackSupport +40 -0
  39. data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
  40. data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
  41. data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  42. data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
  43. data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
  44. data/vendor/Eigen/src/Core/Array.h +417 -0
  45. data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
  46. data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
  47. data/vendor/Eigen/src/Core/Assign.h +90 -0
  48. data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
  49. data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
  50. data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
  51. data/vendor/Eigen/src/Core/Block.h +448 -0
  52. data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
  53. data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
  54. data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
  55. data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
  56. data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
  57. data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
  58. data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
  59. data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  60. data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  61. data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
  62. data/vendor/Eigen/src/Core/DenseBase.h +701 -0
  63. data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
  64. data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
  65. data/vendor/Eigen/src/Core/Diagonal.h +258 -0
  66. data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
  67. data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
  68. data/vendor/Eigen/src/Core/Dot.h +318 -0
  69. data/vendor/Eigen/src/Core/EigenBase.h +160 -0
  70. data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
  71. data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
  72. data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
  73. data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
  74. data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
  75. data/vendor/Eigen/src/Core/IO.h +258 -0
  76. data/vendor/Eigen/src/Core/IndexedView.h +237 -0
  77. data/vendor/Eigen/src/Core/Inverse.h +117 -0
  78. data/vendor/Eigen/src/Core/Map.h +171 -0
  79. data/vendor/Eigen/src/Core/MapBase.h +310 -0
  80. data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
  81. data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
  82. data/vendor/Eigen/src/Core/Matrix.h +565 -0
  83. data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
  84. data/vendor/Eigen/src/Core/NestByValue.h +85 -0
  85. data/vendor/Eigen/src/Core/NoAlias.h +109 -0
  86. data/vendor/Eigen/src/Core/NumTraits.h +335 -0
  87. data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  88. data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
  89. data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
  90. data/vendor/Eigen/src/Core/Product.h +191 -0
  91. data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
  92. data/vendor/Eigen/src/Core/Random.h +218 -0
  93. data/vendor/Eigen/src/Core/Redux.h +515 -0
  94. data/vendor/Eigen/src/Core/Ref.h +381 -0
  95. data/vendor/Eigen/src/Core/Replicate.h +142 -0
  96. data/vendor/Eigen/src/Core/Reshaped.h +454 -0
  97. data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
  98. data/vendor/Eigen/src/Core/Reverse.h +217 -0
  99. data/vendor/Eigen/src/Core/Select.h +164 -0
  100. data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
  101. data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  102. data/vendor/Eigen/src/Core/Solve.h +188 -0
  103. data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
  104. data/vendor/Eigen/src/Core/SolverBase.h +168 -0
  105. data/vendor/Eigen/src/Core/StableNorm.h +251 -0
  106. data/vendor/Eigen/src/Core/StlIterators.h +463 -0
  107. data/vendor/Eigen/src/Core/Stride.h +116 -0
  108. data/vendor/Eigen/src/Core/Swap.h +68 -0
  109. data/vendor/Eigen/src/Core/Transpose.h +464 -0
  110. data/vendor/Eigen/src/Core/Transpositions.h +386 -0
  111. data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
  112. data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
  113. data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
  114. data/vendor/Eigen/src/Core/Visitor.h +381 -0
  115. data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
  116. data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
  117. data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
  118. data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
  119. data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  120. data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
  121. data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
  122. data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  123. data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
  124. data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
  125. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  126. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  127. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  128. data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
  129. data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
  130. data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  131. data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
  132. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  133. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  134. data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
  135. data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
  136. data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  137. data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
  138. data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  139. data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  140. data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  141. data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  142. data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  143. data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  144. data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
  145. data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  146. data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
  147. data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
  148. data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  149. data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
  150. data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
  151. data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
  152. data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
  153. data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  154. data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  155. data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  156. data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  157. data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  158. data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  159. data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  160. data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  161. data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
  162. data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
  163. data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
  164. data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
  165. data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
  166. data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
  167. data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
  168. data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  169. data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
  170. data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
  171. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
  172. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
  173. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  174. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
  175. data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
  176. data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  177. data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
  178. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
  179. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
  180. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
  181. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  182. data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  183. data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
  184. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
  185. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
  186. data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  187. data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  188. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
  189. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
  190. data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
  191. data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
  192. data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  193. data/vendor/Eigen/src/Core/util/Constants.h +563 -0
  194. data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
  195. data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
  196. data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  197. data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
  198. data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
  199. data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
  200. data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
  201. data/vendor/Eigen/src/Core/util/Meta.h +812 -0
  202. data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
  203. data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
  204. data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  205. data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
  206. data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  207. data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
  208. data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  209. data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
  210. data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  211. data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  212. data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  213. data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  214. data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  215. data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  216. data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
  217. data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
  218. data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  219. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
  220. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  221. data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
  222. data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
  223. data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
  224. data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
  225. data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
  226. data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
  227. data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
  228. data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
  229. data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
  230. data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
  231. data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
  232. data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
  233. data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
  234. data/vendor/Eigen/src/Geometry/Translation.h +202 -0
  235. data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
  236. data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  237. data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
  238. data/vendor/Eigen/src/Householder/Householder.h +176 -0
  239. data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
  240. data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  241. data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
  242. data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
  243. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
  244. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
  245. data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
  246. data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
  247. data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
  248. data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
  249. data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  250. data/vendor/Eigen/src/LU/Determinant.h +117 -0
  251. data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
  252. data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
  253. data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
  254. data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  255. data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
  256. data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  257. data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
  258. data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
  259. data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
  260. data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  261. data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
  262. data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
  263. data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  264. data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
  265. data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
  266. data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
  267. data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  268. data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
  269. data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
  270. data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
  271. data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  272. data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
  273. data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  274. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
  275. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
  276. data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
  277. data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
  278. data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  279. data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  280. data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
  281. data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
  282. data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  283. data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
  284. data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
  285. data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
  286. data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
  287. data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  288. data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
  289. data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  290. data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
  291. data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
  292. data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
  293. data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  294. data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
  295. data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
  296. data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
  297. data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
  298. data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  299. data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  300. data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  301. data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  302. data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
  303. data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
  304. data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
  305. data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  306. data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
  307. data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  308. data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  309. data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  310. data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
  311. data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  312. data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  313. data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  314. data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  315. data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  316. data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  317. data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  318. data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  319. data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  320. data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  321. data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  322. data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  323. data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
  324. data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
  325. data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
  326. data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
  327. data/vendor/Eigen/src/StlSupport/details.h +84 -0
  328. data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
  329. data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
  330. data/vendor/Eigen/src/misc/Image.h +82 -0
  331. data/vendor/Eigen/src/misc/Kernel.h +79 -0
  332. data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
  333. data/vendor/Eigen/src/misc/blas.h +440 -0
  334. data/vendor/Eigen/src/misc/lapack.h +152 -0
  335. data/vendor/Eigen/src/misc/lapacke.h +16292 -0
  336. data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
  337. data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
  338. data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
  339. data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
  340. data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  341. data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
  342. data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  343. data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  344. data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
  345. data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
  346. data/vendor/aarand/aarand.hpp +114 -0
  347. data/vendor/annoy/annoylib.h +1495 -0
  348. data/vendor/annoy/kissrandom.h +120 -0
  349. data/vendor/annoy/mman.h +242 -0
  350. data/vendor/hnswlib/bruteforce.h +152 -0
  351. data/vendor/hnswlib/hnswalg.h +1192 -0
  352. data/vendor/hnswlib/hnswlib.h +108 -0
  353. data/vendor/hnswlib/space_ip.h +282 -0
  354. data/vendor/hnswlib/space_l2.h +281 -0
  355. data/vendor/hnswlib/visited_list_pool.h +79 -0
  356. data/vendor/irlba/irlba.hpp +575 -0
  357. data/vendor/irlba/lanczos.hpp +212 -0
  358. data/vendor/irlba/parallel.hpp +474 -0
  359. data/vendor/irlba/utils.hpp +224 -0
  360. data/vendor/irlba/wrappers.hpp +228 -0
  361. data/vendor/kmeans/Base.hpp +75 -0
  362. data/vendor/kmeans/Details.hpp +79 -0
  363. data/vendor/kmeans/HartiganWong.hpp +492 -0
  364. data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
  365. data/vendor/kmeans/InitializeNone.hpp +44 -0
  366. data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
  367. data/vendor/kmeans/InitializeRandom.hpp +91 -0
  368. data/vendor/kmeans/Kmeans.hpp +161 -0
  369. data/vendor/kmeans/Lloyd.hpp +134 -0
  370. data/vendor/kmeans/MiniBatch.hpp +269 -0
  371. data/vendor/kmeans/QuickSearch.hpp +179 -0
  372. data/vendor/kmeans/compute_centroids.hpp +32 -0
  373. data/vendor/kmeans/compute_wcss.hpp +27 -0
  374. data/vendor/kmeans/is_edge_case.hpp +42 -0
  375. data/vendor/kmeans/random.hpp +55 -0
  376. data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
  377. data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
  378. data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
  379. data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
  380. data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
  381. data/vendor/knncolle/knncolle.hpp +34 -0
  382. data/vendor/knncolle/utils/Base.hpp +100 -0
  383. data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
  384. data/vendor/knncolle/utils/distances.hpp +98 -0
  385. data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
  386. data/vendor/powerit/PowerIterations.hpp +157 -0
  387. data/vendor/umappp/NeighborList.hpp +37 -0
  388. data/vendor/umappp/Umap.hpp +662 -0
  389. data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
  390. data/vendor/umappp/find_ab.hpp +157 -0
  391. data/vendor/umappp/neighbor_similarities.hpp +136 -0
  392. data/vendor/umappp/optimize_layout.hpp +285 -0
  393. data/vendor/umappp/spectral_init.hpp +181 -0
  394. data/vendor/umappp/umappp.hpp +13 -0
  395. metadata +465 -0
@@ -0,0 +1,202 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_TRANSLATION_H
11
+ #define EIGEN_TRANSLATION_H
12
+
13
+ namespace Eigen {
14
+
15
+ /** \geometry_module \ingroup Geometry_Module
16
+ *
17
+ * \class Translation
18
+ *
19
+ * \brief Represents a translation transformation
20
+ *
21
+ * \tparam _Scalar the scalar type, i.e., the type of the coefficients.
22
+ * \tparam _Dim the dimension of the space, can be a compile time value or Dynamic
23
+ *
24
+ * \note This class is not aimed to be used to store a translation transformation,
25
+ * but rather to make easier the constructions and updates of Transform objects.
26
+ *
27
+ * \sa class Scaling, class Transform
28
+ */
29
+ template<typename _Scalar, int _Dim>
30
+ class Translation
31
+ {
32
+ public:
33
+ EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF_VECTORIZABLE_FIXED_SIZE(_Scalar,_Dim)
34
+ /** dimension of the space */
35
+ enum { Dim = _Dim };
36
+ /** the scalar type of the coefficients */
37
+ typedef _Scalar Scalar;
38
+ /** corresponding vector type */
39
+ typedef Matrix<Scalar,Dim,1> VectorType;
40
+ /** corresponding linear transformation matrix type */
41
+ typedef Matrix<Scalar,Dim,Dim> LinearMatrixType;
42
+ /** corresponding affine transformation type */
43
+ typedef Transform<Scalar,Dim,Affine> AffineTransformType;
44
+ /** corresponding isometric transformation type */
45
+ typedef Transform<Scalar,Dim,Isometry> IsometryTransformType;
46
+
47
+ protected:
48
+
49
+ VectorType m_coeffs;
50
+
51
+ public:
52
+
53
+ /** Default constructor without initialization. */
54
+ EIGEN_DEVICE_FUNC Translation() {}
55
+ /** */
56
+ EIGEN_DEVICE_FUNC inline Translation(const Scalar& sx, const Scalar& sy)
57
+ {
58
+ eigen_assert(Dim==2);
59
+ m_coeffs.x() = sx;
60
+ m_coeffs.y() = sy;
61
+ }
62
+ /** */
63
+ EIGEN_DEVICE_FUNC inline Translation(const Scalar& sx, const Scalar& sy, const Scalar& sz)
64
+ {
65
+ eigen_assert(Dim==3);
66
+ m_coeffs.x() = sx;
67
+ m_coeffs.y() = sy;
68
+ m_coeffs.z() = sz;
69
+ }
70
+ /** Constructs and initialize the translation transformation from a vector of translation coefficients */
71
+ EIGEN_DEVICE_FUNC explicit inline Translation(const VectorType& vector) : m_coeffs(vector) {}
72
+
73
+ /** \brief Returns the x-translation by value. **/
74
+ EIGEN_DEVICE_FUNC inline Scalar x() const { return m_coeffs.x(); }
75
+ /** \brief Returns the y-translation by value. **/
76
+ EIGEN_DEVICE_FUNC inline Scalar y() const { return m_coeffs.y(); }
77
+ /** \brief Returns the z-translation by value. **/
78
+ EIGEN_DEVICE_FUNC inline Scalar z() const { return m_coeffs.z(); }
79
+
80
+ /** \brief Returns the x-translation as a reference. **/
81
+ EIGEN_DEVICE_FUNC inline Scalar& x() { return m_coeffs.x(); }
82
+ /** \brief Returns the y-translation as a reference. **/
83
+ EIGEN_DEVICE_FUNC inline Scalar& y() { return m_coeffs.y(); }
84
+ /** \brief Returns the z-translation as a reference. **/
85
+ EIGEN_DEVICE_FUNC inline Scalar& z() { return m_coeffs.z(); }
86
+
87
+ EIGEN_DEVICE_FUNC const VectorType& vector() const { return m_coeffs; }
88
+ EIGEN_DEVICE_FUNC VectorType& vector() { return m_coeffs; }
89
+
90
+ EIGEN_DEVICE_FUNC const VectorType& translation() const { return m_coeffs; }
91
+ EIGEN_DEVICE_FUNC VectorType& translation() { return m_coeffs; }
92
+
93
+ /** Concatenates two translation */
94
+ EIGEN_DEVICE_FUNC inline Translation operator* (const Translation& other) const
95
+ { return Translation(m_coeffs + other.m_coeffs); }
96
+
97
+ /** Concatenates a translation and a uniform scaling */
98
+ EIGEN_DEVICE_FUNC inline AffineTransformType operator* (const UniformScaling<Scalar>& other) const;
99
+
100
+ /** Concatenates a translation and a linear transformation */
101
+ template<typename OtherDerived>
102
+ EIGEN_DEVICE_FUNC inline AffineTransformType operator* (const EigenBase<OtherDerived>& linear) const;
103
+
104
+ /** Concatenates a translation and a rotation */
105
+ template<typename Derived>
106
+ EIGEN_DEVICE_FUNC inline IsometryTransformType operator*(const RotationBase<Derived,Dim>& r) const
107
+ { return *this * IsometryTransformType(r); }
108
+
109
+ /** \returns the concatenation of a linear transformation \a l with the translation \a t */
110
+ // its a nightmare to define a templated friend function outside its declaration
111
+ template<typename OtherDerived> friend
112
+ EIGEN_DEVICE_FUNC inline AffineTransformType operator*(const EigenBase<OtherDerived>& linear, const Translation& t)
113
+ {
114
+ AffineTransformType res;
115
+ res.matrix().setZero();
116
+ res.linear() = linear.derived();
117
+ res.translation() = linear.derived() * t.m_coeffs;
118
+ res.matrix().row(Dim).setZero();
119
+ res(Dim,Dim) = Scalar(1);
120
+ return res;
121
+ }
122
+
123
+ /** Concatenates a translation and a transformation */
124
+ template<int Mode, int Options>
125
+ EIGEN_DEVICE_FUNC inline Transform<Scalar,Dim,Mode> operator* (const Transform<Scalar,Dim,Mode,Options>& t) const
126
+ {
127
+ Transform<Scalar,Dim,Mode> res = t;
128
+ res.pretranslate(m_coeffs);
129
+ return res;
130
+ }
131
+
132
+ /** Applies translation to vector */
133
+ template<typename Derived>
134
+ inline typename internal::enable_if<Derived::IsVectorAtCompileTime,VectorType>::type
135
+ operator* (const MatrixBase<Derived>& vec) const
136
+ { return m_coeffs + vec.derived(); }
137
+
138
+ /** \returns the inverse translation (opposite) */
139
+ Translation inverse() const { return Translation(-m_coeffs); }
140
+
141
+ static const Translation Identity() { return Translation(VectorType::Zero()); }
142
+
143
+ /** \returns \c *this with scalar type casted to \a NewScalarType
144
+ *
145
+ * Note that if \a NewScalarType is equal to the current scalar type of \c *this
146
+ * then this function smartly returns a const reference to \c *this.
147
+ */
148
+ template<typename NewScalarType>
149
+ EIGEN_DEVICE_FUNC inline typename internal::cast_return_type<Translation,Translation<NewScalarType,Dim> >::type cast() const
150
+ { return typename internal::cast_return_type<Translation,Translation<NewScalarType,Dim> >::type(*this); }
151
+
152
+ /** Copy constructor with scalar type conversion */
153
+ template<typename OtherScalarType>
154
+ EIGEN_DEVICE_FUNC inline explicit Translation(const Translation<OtherScalarType,Dim>& other)
155
+ { m_coeffs = other.vector().template cast<Scalar>(); }
156
+
157
+ /** \returns \c true if \c *this is approximately equal to \a other, within the precision
158
+ * determined by \a prec.
159
+ *
160
+ * \sa MatrixBase::isApprox() */
161
+ EIGEN_DEVICE_FUNC bool isApprox(const Translation& other, const typename NumTraits<Scalar>::Real& prec = NumTraits<Scalar>::dummy_precision()) const
162
+ { return m_coeffs.isApprox(other.m_coeffs, prec); }
163
+
164
+ };
165
+
166
+ /** \addtogroup Geometry_Module */
167
+ //@{
168
+ typedef Translation<float, 2> Translation2f;
169
+ typedef Translation<double,2> Translation2d;
170
+ typedef Translation<float, 3> Translation3f;
171
+ typedef Translation<double,3> Translation3d;
172
+ //@}
173
+
174
+ template<typename Scalar, int Dim>
175
+ EIGEN_DEVICE_FUNC inline typename Translation<Scalar,Dim>::AffineTransformType
176
+ Translation<Scalar,Dim>::operator* (const UniformScaling<Scalar>& other) const
177
+ {
178
+ AffineTransformType res;
179
+ res.matrix().setZero();
180
+ res.linear().diagonal().fill(other.factor());
181
+ res.translation() = m_coeffs;
182
+ res(Dim,Dim) = Scalar(1);
183
+ return res;
184
+ }
185
+
186
+ template<typename Scalar, int Dim>
187
+ template<typename OtherDerived>
188
+ EIGEN_DEVICE_FUNC inline typename Translation<Scalar,Dim>::AffineTransformType
189
+ Translation<Scalar,Dim>::operator* (const EigenBase<OtherDerived>& linear) const
190
+ {
191
+ AffineTransformType res;
192
+ res.matrix().setZero();
193
+ res.linear() = linear.derived();
194
+ res.translation() = m_coeffs;
195
+ res.matrix().row(Dim).setZero();
196
+ res(Dim,Dim) = Scalar(1);
197
+ return res;
198
+ }
199
+
200
+ } // end namespace Eigen
201
+
202
+ #endif // EIGEN_TRANSLATION_H
@@ -0,0 +1,166 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2009 Hauke Heibel <hauke.heibel@gmail.com>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_UMEYAMA_H
11
+ #define EIGEN_UMEYAMA_H
12
+
13
+ // This file requires the user to include
14
+ // * Eigen/Core
15
+ // * Eigen/LU
16
+ // * Eigen/SVD
17
+ // * Eigen/Array
18
+
19
+ namespace Eigen {
20
+
21
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
22
+
23
+ // These helpers are required since it allows to use mixed types as parameters
24
+ // for the Umeyama. The problem with mixed parameters is that the return type
25
+ // cannot trivially be deduced when float and double types are mixed.
26
+ namespace internal {
27
+
28
+ // Compile time return type deduction for different MatrixBase types.
29
+ // Different means here different alignment and parameters but the same underlying
30
+ // real scalar type.
31
+ template<typename MatrixType, typename OtherMatrixType>
32
+ struct umeyama_transform_matrix_type
33
+ {
34
+ enum {
35
+ MinRowsAtCompileTime = EIGEN_SIZE_MIN_PREFER_DYNAMIC(MatrixType::RowsAtCompileTime, OtherMatrixType::RowsAtCompileTime),
36
+
37
+ // When possible we want to choose some small fixed size value since the result
38
+ // is likely to fit on the stack. So here, EIGEN_SIZE_MIN_PREFER_DYNAMIC is not what we want.
39
+ HomogeneousDimension = int(MinRowsAtCompileTime) == Dynamic ? Dynamic : int(MinRowsAtCompileTime)+1
40
+ };
41
+
42
+ typedef Matrix<typename traits<MatrixType>::Scalar,
43
+ HomogeneousDimension,
44
+ HomogeneousDimension,
45
+ AutoAlign | (traits<MatrixType>::Flags & RowMajorBit ? RowMajor : ColMajor),
46
+ HomogeneousDimension,
47
+ HomogeneousDimension
48
+ > type;
49
+ };
50
+
51
+ }
52
+
53
+ #endif
54
+
55
+ /**
56
+ * \geometry_module \ingroup Geometry_Module
57
+ *
58
+ * \brief Returns the transformation between two point sets.
59
+ *
60
+ * The algorithm is based on:
61
+ * "Least-squares estimation of transformation parameters between two point patterns",
62
+ * Shinji Umeyama, PAMI 1991, DOI: 10.1109/34.88573
63
+ *
64
+ * It estimates parameters \f$ c, \mathbf{R}, \f$ and \f$ \mathbf{t} \f$ such that
65
+ * \f{align*}
66
+ * \frac{1}{n} \sum_{i=1}^n \vert\vert y_i - (c\mathbf{R}x_i + \mathbf{t}) \vert\vert_2^2
67
+ * \f}
68
+ * is minimized.
69
+ *
70
+ * The algorithm is based on the analysis of the covariance matrix
71
+ * \f$ \Sigma_{\mathbf{x}\mathbf{y}} \in \mathbb{R}^{d \times d} \f$
72
+ * of the input point sets \f$ \mathbf{x} \f$ and \f$ \mathbf{y} \f$ where
73
+ * \f$d\f$ is corresponding to the dimension (which is typically small).
74
+ * The analysis is involving the SVD having a complexity of \f$O(d^3)\f$
75
+ * though the actual computational effort lies in the covariance
76
+ * matrix computation which has an asymptotic lower bound of \f$O(dm)\f$ when
77
+ * the input point sets have dimension \f$d \times m\f$.
78
+ *
79
+ * Currently the method is working only for floating point matrices.
80
+ *
81
+ * \todo Should the return type of umeyama() become a Transform?
82
+ *
83
+ * \param src Source points \f$ \mathbf{x} = \left( x_1, \hdots, x_n \right) \f$.
84
+ * \param dst Destination points \f$ \mathbf{y} = \left( y_1, \hdots, y_n \right) \f$.
85
+ * \param with_scaling Sets \f$ c=1 \f$ when <code>false</code> is passed.
86
+ * \return The homogeneous transformation
87
+ * \f{align*}
88
+ * T = \begin{bmatrix} c\mathbf{R} & \mathbf{t} \\ \mathbf{0} & 1 \end{bmatrix}
89
+ * \f}
90
+ * minimizing the residual above. This transformation is always returned as an
91
+ * Eigen::Matrix.
92
+ */
93
+ template <typename Derived, typename OtherDerived>
94
+ typename internal::umeyama_transform_matrix_type<Derived, OtherDerived>::type
95
+ umeyama(const MatrixBase<Derived>& src, const MatrixBase<OtherDerived>& dst, bool with_scaling = true)
96
+ {
97
+ typedef typename internal::umeyama_transform_matrix_type<Derived, OtherDerived>::type TransformationMatrixType;
98
+ typedef typename internal::traits<TransformationMatrixType>::Scalar Scalar;
99
+ typedef typename NumTraits<Scalar>::Real RealScalar;
100
+
101
+ EIGEN_STATIC_ASSERT(!NumTraits<Scalar>::IsComplex, NUMERIC_TYPE_MUST_BE_REAL)
102
+ EIGEN_STATIC_ASSERT((internal::is_same<Scalar, typename internal::traits<OtherDerived>::Scalar>::value),
103
+ YOU_MIXED_DIFFERENT_NUMERIC_TYPES__YOU_NEED_TO_USE_THE_CAST_METHOD_OF_MATRIXBASE_TO_CAST_NUMERIC_TYPES_EXPLICITLY)
104
+
105
+ enum { Dimension = EIGEN_SIZE_MIN_PREFER_DYNAMIC(Derived::RowsAtCompileTime, OtherDerived::RowsAtCompileTime) };
106
+
107
+ typedef Matrix<Scalar, Dimension, 1> VectorType;
108
+ typedef Matrix<Scalar, Dimension, Dimension> MatrixType;
109
+ typedef typename internal::plain_matrix_type_row_major<Derived>::type RowMajorMatrixType;
110
+
111
+ const Index m = src.rows(); // dimension
112
+ const Index n = src.cols(); // number of measurements
113
+
114
+ // required for demeaning ...
115
+ const RealScalar one_over_n = RealScalar(1) / static_cast<RealScalar>(n);
116
+
117
+ // computation of mean
118
+ const VectorType src_mean = src.rowwise().sum() * one_over_n;
119
+ const VectorType dst_mean = dst.rowwise().sum() * one_over_n;
120
+
121
+ // demeaning of src and dst points
122
+ const RowMajorMatrixType src_demean = src.colwise() - src_mean;
123
+ const RowMajorMatrixType dst_demean = dst.colwise() - dst_mean;
124
+
125
+ // Eq. (36)-(37)
126
+ const Scalar src_var = src_demean.rowwise().squaredNorm().sum() * one_over_n;
127
+
128
+ // Eq. (38)
129
+ const MatrixType sigma = one_over_n * dst_demean * src_demean.transpose();
130
+
131
+ JacobiSVD<MatrixType> svd(sigma, ComputeFullU | ComputeFullV);
132
+
133
+ // Initialize the resulting transformation with an identity matrix...
134
+ TransformationMatrixType Rt = TransformationMatrixType::Identity(m+1,m+1);
135
+
136
+ // Eq. (39)
137
+ VectorType S = VectorType::Ones(m);
138
+
139
+ if ( svd.matrixU().determinant() * svd.matrixV().determinant() < 0 )
140
+ S(m-1) = -1;
141
+
142
+ // Eq. (40) and (43)
143
+ Rt.block(0,0,m,m).noalias() = svd.matrixU() * S.asDiagonal() * svd.matrixV().transpose();
144
+
145
+ if (with_scaling)
146
+ {
147
+ // Eq. (42)
148
+ const Scalar c = Scalar(1)/src_var * svd.singularValues().dot(S);
149
+
150
+ // Eq. (41)
151
+ Rt.col(m).head(m) = dst_mean;
152
+ Rt.col(m).head(m).noalias() -= c*Rt.topLeftCorner(m,m)*src_mean;
153
+ Rt.block(0,0,m,m) *= c;
154
+ }
155
+ else
156
+ {
157
+ Rt.col(m).head(m) = dst_mean;
158
+ Rt.col(m).head(m).noalias() -= Rt.topLeftCorner(m,m)*src_mean;
159
+ }
160
+
161
+ return Rt;
162
+ }
163
+
164
+ } // end namespace Eigen
165
+
166
+ #endif // EIGEN_UMEYAMA_H
@@ -0,0 +1,168 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2009 Rohit Garg <rpg.314@gmail.com>
5
+ // Copyright (C) 2009-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_GEOMETRY_SIMD_H
12
+ #define EIGEN_GEOMETRY_SIMD_H
13
+
14
+ namespace Eigen {
15
+
16
+ namespace internal {
17
+
18
+ template<class Derived, class OtherDerived>
19
+ struct quat_product<Architecture::Target, Derived, OtherDerived, float>
20
+ {
21
+ enum {
22
+ AAlignment = traits<Derived>::Alignment,
23
+ BAlignment = traits<OtherDerived>::Alignment,
24
+ ResAlignment = traits<Quaternion<float> >::Alignment
25
+ };
26
+ static inline Quaternion<float> run(const QuaternionBase<Derived>& _a, const QuaternionBase<OtherDerived>& _b)
27
+ {
28
+ evaluator<typename Derived::Coefficients> ae(_a.coeffs());
29
+ evaluator<typename OtherDerived::Coefficients> be(_b.coeffs());
30
+ Quaternion<float> res;
31
+ const float neg_zero = numext::bit_cast<float>(0x80000000u);
32
+ const float arr[4] = {0.f, 0.f, 0.f, neg_zero};
33
+ const Packet4f mask = ploadu<Packet4f>(arr);
34
+ Packet4f a = ae.template packet<AAlignment,Packet4f>(0);
35
+ Packet4f b = be.template packet<BAlignment,Packet4f>(0);
36
+ Packet4f s1 = pmul(vec4f_swizzle1(a,1,2,0,2),vec4f_swizzle1(b,2,0,1,2));
37
+ Packet4f s2 = pmul(vec4f_swizzle1(a,3,3,3,1),vec4f_swizzle1(b,0,1,2,1));
38
+ pstoret<float,Packet4f,ResAlignment>(
39
+ &res.x(),
40
+ padd(psub(pmul(a,vec4f_swizzle1(b,3,3,3,3)),
41
+ pmul(vec4f_swizzle1(a,2,0,1,0),
42
+ vec4f_swizzle1(b,1,2,0,0))),
43
+ pxor(mask,padd(s1,s2))));
44
+
45
+ return res;
46
+ }
47
+ };
48
+
49
+ template<class Derived>
50
+ struct quat_conj<Architecture::Target, Derived, float>
51
+ {
52
+ enum {
53
+ ResAlignment = traits<Quaternion<float> >::Alignment
54
+ };
55
+ static inline Quaternion<float> run(const QuaternionBase<Derived>& q)
56
+ {
57
+ evaluator<typename Derived::Coefficients> qe(q.coeffs());
58
+ Quaternion<float> res;
59
+ const float neg_zero = numext::bit_cast<float>(0x80000000u);
60
+ const float arr[4] = {neg_zero, neg_zero, neg_zero,0.f};
61
+ const Packet4f mask = ploadu<Packet4f>(arr);
62
+ pstoret<float,Packet4f,ResAlignment>(&res.x(), pxor(mask, qe.template packet<traits<Derived>::Alignment,Packet4f>(0)));
63
+ return res;
64
+ }
65
+ };
66
+
67
+
68
+ template<typename VectorLhs,typename VectorRhs>
69
+ struct cross3_impl<Architecture::Target,VectorLhs,VectorRhs,float,true>
70
+ {
71
+ enum {
72
+ ResAlignment = traits<typename plain_matrix_type<VectorLhs>::type>::Alignment
73
+ };
74
+ static inline typename plain_matrix_type<VectorLhs>::type
75
+ run(const VectorLhs& lhs, const VectorRhs& rhs)
76
+ {
77
+ evaluator<VectorLhs> lhs_eval(lhs);
78
+ evaluator<VectorRhs> rhs_eval(rhs);
79
+ Packet4f a = lhs_eval.template packet<traits<VectorLhs>::Alignment,Packet4f>(0);
80
+ Packet4f b = rhs_eval.template packet<traits<VectorRhs>::Alignment,Packet4f>(0);
81
+ Packet4f mul1 = pmul(vec4f_swizzle1(a,1,2,0,3),vec4f_swizzle1(b,2,0,1,3));
82
+ Packet4f mul2 = pmul(vec4f_swizzle1(a,2,0,1,3),vec4f_swizzle1(b,1,2,0,3));
83
+ typename plain_matrix_type<VectorLhs>::type res;
84
+ pstoret<float,Packet4f,ResAlignment>(&res.x(),psub(mul1,mul2));
85
+ return res;
86
+ }
87
+ };
88
+
89
+
90
+
91
+ #if (defined EIGEN_VECTORIZE_SSE) || (EIGEN_ARCH_ARM64)
92
+
93
+ template<class Derived, class OtherDerived>
94
+ struct quat_product<Architecture::Target, Derived, OtherDerived, double>
95
+ {
96
+ enum {
97
+ BAlignment = traits<OtherDerived>::Alignment,
98
+ ResAlignment = traits<Quaternion<double> >::Alignment
99
+ };
100
+
101
+ static inline Quaternion<double> run(const QuaternionBase<Derived>& _a, const QuaternionBase<OtherDerived>& _b)
102
+ {
103
+ Quaternion<double> res;
104
+
105
+ evaluator<typename Derived::Coefficients> ae(_a.coeffs());
106
+ evaluator<typename OtherDerived::Coefficients> be(_b.coeffs());
107
+
108
+ const double* a = _a.coeffs().data();
109
+ Packet2d b_xy = be.template packet<BAlignment,Packet2d>(0);
110
+ Packet2d b_zw = be.template packet<BAlignment,Packet2d>(2);
111
+ Packet2d a_xx = pset1<Packet2d>(a[0]);
112
+ Packet2d a_yy = pset1<Packet2d>(a[1]);
113
+ Packet2d a_zz = pset1<Packet2d>(a[2]);
114
+ Packet2d a_ww = pset1<Packet2d>(a[3]);
115
+
116
+ // two temporaries:
117
+ Packet2d t1, t2;
118
+
119
+ /*
120
+ * t1 = ww*xy + yy*zw
121
+ * t2 = zz*xy - xx*zw
122
+ * res.xy = t1 +/- swap(t2)
123
+ */
124
+ t1 = padd(pmul(a_ww, b_xy), pmul(a_yy, b_zw));
125
+ t2 = psub(pmul(a_zz, b_xy), pmul(a_xx, b_zw));
126
+ pstoret<double,Packet2d,ResAlignment>(&res.x(), paddsub(t1, preverse(t2)));
127
+
128
+ /*
129
+ * t1 = ww*zw - yy*xy
130
+ * t2 = zz*zw + xx*xy
131
+ * res.zw = t1 -/+ swap(t2) = swap( swap(t1) +/- t2)
132
+ */
133
+ t1 = psub(pmul(a_ww, b_zw), pmul(a_yy, b_xy));
134
+ t2 = padd(pmul(a_zz, b_zw), pmul(a_xx, b_xy));
135
+ pstoret<double,Packet2d,ResAlignment>(&res.z(), preverse(paddsub(preverse(t1), t2)));
136
+
137
+ return res;
138
+ }
139
+ };
140
+
141
+ template<class Derived>
142
+ struct quat_conj<Architecture::Target, Derived, double>
143
+ {
144
+ enum {
145
+ ResAlignment = traits<Quaternion<double> >::Alignment
146
+ };
147
+ static inline Quaternion<double> run(const QuaternionBase<Derived>& q)
148
+ {
149
+ evaluator<typename Derived::Coefficients> qe(q.coeffs());
150
+ Quaternion<double> res;
151
+ const double neg_zero = numext::bit_cast<double>(0x8000000000000000ull);
152
+ const double arr1[2] = {neg_zero, neg_zero};
153
+ const double arr2[2] = {neg_zero, 0.0};
154
+ const Packet2d mask0 = ploadu<Packet2d>(arr1);
155
+ const Packet2d mask2 = ploadu<Packet2d>(arr2);
156
+ pstoret<double,Packet2d,ResAlignment>(&res.x(), pxor(mask0, qe.template packet<traits<Derived>::Alignment,Packet2d>(0)));
157
+ pstoret<double,Packet2d,ResAlignment>(&res.z(), pxor(mask2, qe.template packet<traits<Derived>::Alignment,Packet2d>(2)));
158
+ return res;
159
+ }
160
+ };
161
+
162
+ #endif // end EIGEN_VECTORIZE_SSE_OR_EIGEN_ARCH_ARM64
163
+
164
+ } // end namespace internal
165
+
166
+ } // end namespace Eigen
167
+
168
+ #endif // EIGEN_GEOMETRY_SIMD_H
@@ -0,0 +1,110 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2010 Vincent Lejeune
5
+ // Copyright (C) 2010 Gael Guennebaud <gael.guennebaud@inria.fr>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_BLOCK_HOUSEHOLDER_H
12
+ #define EIGEN_BLOCK_HOUSEHOLDER_H
13
+
14
+ // This file contains some helper function to deal with block householder reflectors
15
+
16
+ namespace Eigen {
17
+
18
+ namespace internal {
19
+
20
+ /** \internal */
21
+ // template<typename TriangularFactorType,typename VectorsType,typename CoeffsType>
22
+ // void make_block_householder_triangular_factor(TriangularFactorType& triFactor, const VectorsType& vectors, const CoeffsType& hCoeffs)
23
+ // {
24
+ // typedef typename VectorsType::Scalar Scalar;
25
+ // const Index nbVecs = vectors.cols();
26
+ // eigen_assert(triFactor.rows() == nbVecs && triFactor.cols() == nbVecs && vectors.rows()>=nbVecs);
27
+ //
28
+ // for(Index i = 0; i < nbVecs; i++)
29
+ // {
30
+ // Index rs = vectors.rows() - i;
31
+ // // Warning, note that hCoeffs may alias with vectors.
32
+ // // It is then necessary to copy it before modifying vectors(i,i).
33
+ // typename CoeffsType::Scalar h = hCoeffs(i);
34
+ // // This hack permits to pass trough nested Block<> and Transpose<> expressions.
35
+ // Scalar *Vii_ptr = const_cast<Scalar*>(vectors.data() + vectors.outerStride()*i + vectors.innerStride()*i);
36
+ // Scalar Vii = *Vii_ptr;
37
+ // *Vii_ptr = Scalar(1);
38
+ // triFactor.col(i).head(i).noalias() = -h * vectors.block(i, 0, rs, i).adjoint()
39
+ // * vectors.col(i).tail(rs);
40
+ // *Vii_ptr = Vii;
41
+ // // FIXME add .noalias() once the triangular product can work inplace
42
+ // triFactor.col(i).head(i) = triFactor.block(0,0,i,i).template triangularView<Upper>()
43
+ // * triFactor.col(i).head(i);
44
+ // triFactor(i,i) = hCoeffs(i);
45
+ // }
46
+ // }
47
+
48
+ /** \internal */
49
+ // This variant avoid modifications in vectors
50
+ template<typename TriangularFactorType,typename VectorsType,typename CoeffsType>
51
+ void make_block_householder_triangular_factor(TriangularFactorType& triFactor, const VectorsType& vectors, const CoeffsType& hCoeffs)
52
+ {
53
+ const Index nbVecs = vectors.cols();
54
+ eigen_assert(triFactor.rows() == nbVecs && triFactor.cols() == nbVecs && vectors.rows()>=nbVecs);
55
+
56
+ for(Index i = nbVecs-1; i >=0 ; --i)
57
+ {
58
+ Index rs = vectors.rows() - i - 1;
59
+ Index rt = nbVecs-i-1;
60
+
61
+ if(rt>0)
62
+ {
63
+ triFactor.row(i).tail(rt).noalias() = -hCoeffs(i) * vectors.col(i).tail(rs).adjoint()
64
+ * vectors.bottomRightCorner(rs, rt).template triangularView<UnitLower>();
65
+
66
+ // FIXME use the following line with .noalias() once the triangular product can work inplace
67
+ // triFactor.row(i).tail(rt) = triFactor.row(i).tail(rt) * triFactor.bottomRightCorner(rt,rt).template triangularView<Upper>();
68
+ for(Index j=nbVecs-1; j>i; --j)
69
+ {
70
+ typename TriangularFactorType::Scalar z = triFactor(i,j);
71
+ triFactor(i,j) = z * triFactor(j,j);
72
+ if(nbVecs-j-1>0)
73
+ triFactor.row(i).tail(nbVecs-j-1) += z * triFactor.row(j).tail(nbVecs-j-1);
74
+ }
75
+
76
+ }
77
+ triFactor(i,i) = hCoeffs(i);
78
+ }
79
+ }
80
+
81
+ /** \internal
82
+ * if forward then perform mat = H0 * H1 * H2 * mat
83
+ * otherwise perform mat = H2 * H1 * H0 * mat
84
+ */
85
+ template<typename MatrixType,typename VectorsType,typename CoeffsType>
86
+ void apply_block_householder_on_the_left(MatrixType& mat, const VectorsType& vectors, const CoeffsType& hCoeffs, bool forward)
87
+ {
88
+ enum { TFactorSize = MatrixType::ColsAtCompileTime };
89
+ Index nbVecs = vectors.cols();
90
+ Matrix<typename MatrixType::Scalar, TFactorSize, TFactorSize, RowMajor> T(nbVecs,nbVecs);
91
+
92
+ if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
93
+ else make_block_householder_triangular_factor(T, vectors, hCoeffs.conjugate());
94
+ const TriangularView<const VectorsType, UnitLower> V(vectors);
95
+
96
+ // A -= V T V^* A
97
+ Matrix<typename MatrixType::Scalar,VectorsType::ColsAtCompileTime,MatrixType::ColsAtCompileTime,
98
+ (VectorsType::MaxColsAtCompileTime==1 && MatrixType::MaxColsAtCompileTime!=1)?RowMajor:ColMajor,
99
+ VectorsType::MaxColsAtCompileTime,MatrixType::MaxColsAtCompileTime> tmp = V.adjoint() * mat;
100
+ // FIXME add .noalias() once the triangular product can work inplace
101
+ if(forward) tmp = T.template triangularView<Upper>() * tmp;
102
+ else tmp = T.template triangularView<Upper>().adjoint() * tmp;
103
+ mat.noalias() -= V * tmp;
104
+ }
105
+
106
+ } // end namespace internal
107
+
108
+ } // end namespace Eigen
109
+
110
+ #endif // EIGEN_BLOCK_HOUSEHOLDER_H