umappp 0.1.2

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Files changed (395) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +25 -0
  3. data/README.md +110 -0
  4. data/ext/umappp/extconf.rb +25 -0
  5. data/ext/umappp/numo.hpp +867 -0
  6. data/ext/umappp/umappp.cpp +225 -0
  7. data/lib/umappp/version.rb +5 -0
  8. data/lib/umappp.rb +41 -0
  9. data/vendor/Eigen/Cholesky +45 -0
  10. data/vendor/Eigen/CholmodSupport +48 -0
  11. data/vendor/Eigen/Core +384 -0
  12. data/vendor/Eigen/Dense +7 -0
  13. data/vendor/Eigen/Eigen +2 -0
  14. data/vendor/Eigen/Eigenvalues +60 -0
  15. data/vendor/Eigen/Geometry +59 -0
  16. data/vendor/Eigen/Householder +29 -0
  17. data/vendor/Eigen/IterativeLinearSolvers +48 -0
  18. data/vendor/Eigen/Jacobi +32 -0
  19. data/vendor/Eigen/KLUSupport +41 -0
  20. data/vendor/Eigen/LU +47 -0
  21. data/vendor/Eigen/MetisSupport +35 -0
  22. data/vendor/Eigen/OrderingMethods +70 -0
  23. data/vendor/Eigen/PaStiXSupport +49 -0
  24. data/vendor/Eigen/PardisoSupport +35 -0
  25. data/vendor/Eigen/QR +50 -0
  26. data/vendor/Eigen/QtAlignedMalloc +39 -0
  27. data/vendor/Eigen/SPQRSupport +34 -0
  28. data/vendor/Eigen/SVD +50 -0
  29. data/vendor/Eigen/Sparse +34 -0
  30. data/vendor/Eigen/SparseCholesky +37 -0
  31. data/vendor/Eigen/SparseCore +69 -0
  32. data/vendor/Eigen/SparseLU +50 -0
  33. data/vendor/Eigen/SparseQR +36 -0
  34. data/vendor/Eigen/StdDeque +27 -0
  35. data/vendor/Eigen/StdList +26 -0
  36. data/vendor/Eigen/StdVector +27 -0
  37. data/vendor/Eigen/SuperLUSupport +64 -0
  38. data/vendor/Eigen/UmfPackSupport +40 -0
  39. data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
  40. data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
  41. data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  42. data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
  43. data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
  44. data/vendor/Eigen/src/Core/Array.h +417 -0
  45. data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
  46. data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
  47. data/vendor/Eigen/src/Core/Assign.h +90 -0
  48. data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
  49. data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
  50. data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
  51. data/vendor/Eigen/src/Core/Block.h +448 -0
  52. data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
  53. data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
  54. data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
  55. data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
  56. data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
  57. data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
  58. data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
  59. data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  60. data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  61. data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
  62. data/vendor/Eigen/src/Core/DenseBase.h +701 -0
  63. data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
  64. data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
  65. data/vendor/Eigen/src/Core/Diagonal.h +258 -0
  66. data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
  67. data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
  68. data/vendor/Eigen/src/Core/Dot.h +318 -0
  69. data/vendor/Eigen/src/Core/EigenBase.h +160 -0
  70. data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
  71. data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
  72. data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
  73. data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
  74. data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
  75. data/vendor/Eigen/src/Core/IO.h +258 -0
  76. data/vendor/Eigen/src/Core/IndexedView.h +237 -0
  77. data/vendor/Eigen/src/Core/Inverse.h +117 -0
  78. data/vendor/Eigen/src/Core/Map.h +171 -0
  79. data/vendor/Eigen/src/Core/MapBase.h +310 -0
  80. data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
  81. data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
  82. data/vendor/Eigen/src/Core/Matrix.h +565 -0
  83. data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
  84. data/vendor/Eigen/src/Core/NestByValue.h +85 -0
  85. data/vendor/Eigen/src/Core/NoAlias.h +109 -0
  86. data/vendor/Eigen/src/Core/NumTraits.h +335 -0
  87. data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  88. data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
  89. data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
  90. data/vendor/Eigen/src/Core/Product.h +191 -0
  91. data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
  92. data/vendor/Eigen/src/Core/Random.h +218 -0
  93. data/vendor/Eigen/src/Core/Redux.h +515 -0
  94. data/vendor/Eigen/src/Core/Ref.h +381 -0
  95. data/vendor/Eigen/src/Core/Replicate.h +142 -0
  96. data/vendor/Eigen/src/Core/Reshaped.h +454 -0
  97. data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
  98. data/vendor/Eigen/src/Core/Reverse.h +217 -0
  99. data/vendor/Eigen/src/Core/Select.h +164 -0
  100. data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
  101. data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  102. data/vendor/Eigen/src/Core/Solve.h +188 -0
  103. data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
  104. data/vendor/Eigen/src/Core/SolverBase.h +168 -0
  105. data/vendor/Eigen/src/Core/StableNorm.h +251 -0
  106. data/vendor/Eigen/src/Core/StlIterators.h +463 -0
  107. data/vendor/Eigen/src/Core/Stride.h +116 -0
  108. data/vendor/Eigen/src/Core/Swap.h +68 -0
  109. data/vendor/Eigen/src/Core/Transpose.h +464 -0
  110. data/vendor/Eigen/src/Core/Transpositions.h +386 -0
  111. data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
  112. data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
  113. data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
  114. data/vendor/Eigen/src/Core/Visitor.h +381 -0
  115. data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
  116. data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
  117. data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
  118. data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
  119. data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  120. data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
  121. data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
  122. data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  123. data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
  124. data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
  125. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  126. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  127. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  128. data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
  129. data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
  130. data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  131. data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
  132. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  133. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  134. data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
  135. data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
  136. data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  137. data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
  138. data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  139. data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  140. data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  141. data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  142. data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  143. data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  144. data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
  145. data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  146. data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
  147. data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
  148. data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  149. data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
  150. data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
  151. data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
  152. data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
  153. data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  154. data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  155. data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  156. data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  157. data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  158. data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  159. data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  160. data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  161. data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
  162. data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
  163. data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
  164. data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
  165. data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
  166. data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
  167. data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
  168. data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  169. data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
  170. data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
  171. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
  172. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
  173. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  174. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
  175. data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
  176. data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  177. data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
  178. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
  179. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
  180. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
  181. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  182. data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  183. data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
  184. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
  185. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
  186. data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  187. data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  188. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
  189. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
  190. data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
  191. data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
  192. data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  193. data/vendor/Eigen/src/Core/util/Constants.h +563 -0
  194. data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
  195. data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
  196. data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  197. data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
  198. data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
  199. data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
  200. data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
  201. data/vendor/Eigen/src/Core/util/Meta.h +812 -0
  202. data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
  203. data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
  204. data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  205. data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
  206. data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  207. data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
  208. data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  209. data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
  210. data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  211. data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  212. data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  213. data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  214. data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  215. data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  216. data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
  217. data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
  218. data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  219. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
  220. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  221. data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
  222. data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
  223. data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
  224. data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
  225. data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
  226. data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
  227. data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
  228. data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
  229. data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
  230. data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
  231. data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
  232. data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
  233. data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
  234. data/vendor/Eigen/src/Geometry/Translation.h +202 -0
  235. data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
  236. data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  237. data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
  238. data/vendor/Eigen/src/Householder/Householder.h +176 -0
  239. data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
  240. data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  241. data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
  242. data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
  243. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
  244. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
  245. data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
  246. data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
  247. data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
  248. data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
  249. data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  250. data/vendor/Eigen/src/LU/Determinant.h +117 -0
  251. data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
  252. data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
  253. data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
  254. data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  255. data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
  256. data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  257. data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
  258. data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
  259. data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
  260. data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  261. data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
  262. data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
  263. data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  264. data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
  265. data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
  266. data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
  267. data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  268. data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
  269. data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
  270. data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
  271. data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  272. data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
  273. data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  274. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
  275. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
  276. data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
  277. data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
  278. data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  279. data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  280. data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
  281. data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
  282. data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  283. data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
  284. data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
  285. data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
  286. data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
  287. data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  288. data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
  289. data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  290. data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
  291. data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
  292. data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
  293. data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  294. data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
  295. data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
  296. data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
  297. data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
  298. data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  299. data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  300. data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  301. data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  302. data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
  303. data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
  304. data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
  305. data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  306. data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
  307. data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  308. data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  309. data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  310. data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
  311. data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  312. data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  313. data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  314. data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  315. data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  316. data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  317. data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  318. data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  319. data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  320. data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  321. data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  322. data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  323. data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
  324. data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
  325. data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
  326. data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
  327. data/vendor/Eigen/src/StlSupport/details.h +84 -0
  328. data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
  329. data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
  330. data/vendor/Eigen/src/misc/Image.h +82 -0
  331. data/vendor/Eigen/src/misc/Kernel.h +79 -0
  332. data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
  333. data/vendor/Eigen/src/misc/blas.h +440 -0
  334. data/vendor/Eigen/src/misc/lapack.h +152 -0
  335. data/vendor/Eigen/src/misc/lapacke.h +16292 -0
  336. data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
  337. data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
  338. data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
  339. data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
  340. data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  341. data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
  342. data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  343. data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  344. data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
  345. data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
  346. data/vendor/aarand/aarand.hpp +114 -0
  347. data/vendor/annoy/annoylib.h +1495 -0
  348. data/vendor/annoy/kissrandom.h +120 -0
  349. data/vendor/annoy/mman.h +242 -0
  350. data/vendor/hnswlib/bruteforce.h +152 -0
  351. data/vendor/hnswlib/hnswalg.h +1192 -0
  352. data/vendor/hnswlib/hnswlib.h +108 -0
  353. data/vendor/hnswlib/space_ip.h +282 -0
  354. data/vendor/hnswlib/space_l2.h +281 -0
  355. data/vendor/hnswlib/visited_list_pool.h +79 -0
  356. data/vendor/irlba/irlba.hpp +575 -0
  357. data/vendor/irlba/lanczos.hpp +212 -0
  358. data/vendor/irlba/parallel.hpp +474 -0
  359. data/vendor/irlba/utils.hpp +224 -0
  360. data/vendor/irlba/wrappers.hpp +228 -0
  361. data/vendor/kmeans/Base.hpp +75 -0
  362. data/vendor/kmeans/Details.hpp +79 -0
  363. data/vendor/kmeans/HartiganWong.hpp +492 -0
  364. data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
  365. data/vendor/kmeans/InitializeNone.hpp +44 -0
  366. data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
  367. data/vendor/kmeans/InitializeRandom.hpp +91 -0
  368. data/vendor/kmeans/Kmeans.hpp +161 -0
  369. data/vendor/kmeans/Lloyd.hpp +134 -0
  370. data/vendor/kmeans/MiniBatch.hpp +269 -0
  371. data/vendor/kmeans/QuickSearch.hpp +179 -0
  372. data/vendor/kmeans/compute_centroids.hpp +32 -0
  373. data/vendor/kmeans/compute_wcss.hpp +27 -0
  374. data/vendor/kmeans/is_edge_case.hpp +42 -0
  375. data/vendor/kmeans/random.hpp +55 -0
  376. data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
  377. data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
  378. data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
  379. data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
  380. data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
  381. data/vendor/knncolle/knncolle.hpp +34 -0
  382. data/vendor/knncolle/utils/Base.hpp +100 -0
  383. data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
  384. data/vendor/knncolle/utils/distances.hpp +98 -0
  385. data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
  386. data/vendor/powerit/PowerIterations.hpp +157 -0
  387. data/vendor/umappp/NeighborList.hpp +37 -0
  388. data/vendor/umappp/Umap.hpp +662 -0
  389. data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
  390. data/vendor/umappp/find_ab.hpp +157 -0
  391. data/vendor/umappp/neighbor_similarities.hpp +136 -0
  392. data/vendor/umappp/optimize_layout.hpp +285 -0
  393. data/vendor/umappp/spectral_init.hpp +181 -0
  394. data/vendor/umappp/umappp.hpp +13 -0
  395. metadata +465 -0
@@ -0,0 +1,688 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008-2011 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ // Copyright (C) 2009 Keir Mierle <mierle@gmail.com>
6
+ // Copyright (C) 2009 Benoit Jacob <jacob.benoit.1@gmail.com>
7
+ // Copyright (C) 2011 Timothy E. Holy <tim.holy@gmail.com >
8
+ //
9
+ // This Source Code Form is subject to the terms of the Mozilla
10
+ // Public License v. 2.0. If a copy of the MPL was not distributed
11
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
12
+
13
+ #ifndef EIGEN_LDLT_H
14
+ #define EIGEN_LDLT_H
15
+
16
+ namespace Eigen {
17
+
18
+ namespace internal {
19
+ template<typename _MatrixType, int _UpLo> struct traits<LDLT<_MatrixType, _UpLo> >
20
+ : traits<_MatrixType>
21
+ {
22
+ typedef MatrixXpr XprKind;
23
+ typedef SolverStorage StorageKind;
24
+ typedef int StorageIndex;
25
+ enum { Flags = 0 };
26
+ };
27
+
28
+ template<typename MatrixType, int UpLo> struct LDLT_Traits;
29
+
30
+ // PositiveSemiDef means positive semi-definite and non-zero; same for NegativeSemiDef
31
+ enum SignMatrix { PositiveSemiDef, NegativeSemiDef, ZeroSign, Indefinite };
32
+ }
33
+
34
+ /** \ingroup Cholesky_Module
35
+ *
36
+ * \class LDLT
37
+ *
38
+ * \brief Robust Cholesky decomposition of a matrix with pivoting
39
+ *
40
+ * \tparam _MatrixType the type of the matrix of which to compute the LDL^T Cholesky decomposition
41
+ * \tparam _UpLo the triangular part that will be used for the decompositon: Lower (default) or Upper.
42
+ * The other triangular part won't be read.
43
+ *
44
+ * Perform a robust Cholesky decomposition of a positive semidefinite or negative semidefinite
45
+ * matrix \f$ A \f$ such that \f$ A = P^TLDL^*P \f$, where P is a permutation matrix, L
46
+ * is lower triangular with a unit diagonal and D is a diagonal matrix.
47
+ *
48
+ * The decomposition uses pivoting to ensure stability, so that D will have
49
+ * zeros in the bottom right rank(A) - n submatrix. Avoiding the square root
50
+ * on D also stabilizes the computation.
51
+ *
52
+ * Remember that Cholesky decompositions are not rank-revealing. Also, do not use a Cholesky
53
+ * decomposition to determine whether a system of equations has a solution.
54
+ *
55
+ * This class supports the \link InplaceDecomposition inplace decomposition \endlink mechanism.
56
+ *
57
+ * \sa MatrixBase::ldlt(), SelfAdjointView::ldlt(), class LLT
58
+ */
59
+ template<typename _MatrixType, int _UpLo> class LDLT
60
+ : public SolverBase<LDLT<_MatrixType, _UpLo> >
61
+ {
62
+ public:
63
+ typedef _MatrixType MatrixType;
64
+ typedef SolverBase<LDLT> Base;
65
+ friend class SolverBase<LDLT>;
66
+
67
+ EIGEN_GENERIC_PUBLIC_INTERFACE(LDLT)
68
+ enum {
69
+ MaxRowsAtCompileTime = MatrixType::MaxRowsAtCompileTime,
70
+ MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime,
71
+ UpLo = _UpLo
72
+ };
73
+ typedef Matrix<Scalar, RowsAtCompileTime, 1, 0, MaxRowsAtCompileTime, 1> TmpMatrixType;
74
+
75
+ typedef Transpositions<RowsAtCompileTime, MaxRowsAtCompileTime> TranspositionType;
76
+ typedef PermutationMatrix<RowsAtCompileTime, MaxRowsAtCompileTime> PermutationType;
77
+
78
+ typedef internal::LDLT_Traits<MatrixType,UpLo> Traits;
79
+
80
+ /** \brief Default Constructor.
81
+ *
82
+ * The default constructor is useful in cases in which the user intends to
83
+ * perform decompositions via LDLT::compute(const MatrixType&).
84
+ */
85
+ LDLT()
86
+ : m_matrix(),
87
+ m_transpositions(),
88
+ m_sign(internal::ZeroSign),
89
+ m_isInitialized(false)
90
+ {}
91
+
92
+ /** \brief Default Constructor with memory preallocation
93
+ *
94
+ * Like the default constructor but with preallocation of the internal data
95
+ * according to the specified problem \a size.
96
+ * \sa LDLT()
97
+ */
98
+ explicit LDLT(Index size)
99
+ : m_matrix(size, size),
100
+ m_transpositions(size),
101
+ m_temporary(size),
102
+ m_sign(internal::ZeroSign),
103
+ m_isInitialized(false)
104
+ {}
105
+
106
+ /** \brief Constructor with decomposition
107
+ *
108
+ * This calculates the decomposition for the input \a matrix.
109
+ *
110
+ * \sa LDLT(Index size)
111
+ */
112
+ template<typename InputType>
113
+ explicit LDLT(const EigenBase<InputType>& matrix)
114
+ : m_matrix(matrix.rows(), matrix.cols()),
115
+ m_transpositions(matrix.rows()),
116
+ m_temporary(matrix.rows()),
117
+ m_sign(internal::ZeroSign),
118
+ m_isInitialized(false)
119
+ {
120
+ compute(matrix.derived());
121
+ }
122
+
123
+ /** \brief Constructs a LDLT factorization from a given matrix
124
+ *
125
+ * This overloaded constructor is provided for \link InplaceDecomposition inplace decomposition \endlink when \c MatrixType is a Eigen::Ref.
126
+ *
127
+ * \sa LDLT(const EigenBase&)
128
+ */
129
+ template<typename InputType>
130
+ explicit LDLT(EigenBase<InputType>& matrix)
131
+ : m_matrix(matrix.derived()),
132
+ m_transpositions(matrix.rows()),
133
+ m_temporary(matrix.rows()),
134
+ m_sign(internal::ZeroSign),
135
+ m_isInitialized(false)
136
+ {
137
+ compute(matrix.derived());
138
+ }
139
+
140
+ /** Clear any existing decomposition
141
+ * \sa rankUpdate(w,sigma)
142
+ */
143
+ void setZero()
144
+ {
145
+ m_isInitialized = false;
146
+ }
147
+
148
+ /** \returns a view of the upper triangular matrix U */
149
+ inline typename Traits::MatrixU matrixU() const
150
+ {
151
+ eigen_assert(m_isInitialized && "LDLT is not initialized.");
152
+ return Traits::getU(m_matrix);
153
+ }
154
+
155
+ /** \returns a view of the lower triangular matrix L */
156
+ inline typename Traits::MatrixL matrixL() const
157
+ {
158
+ eigen_assert(m_isInitialized && "LDLT is not initialized.");
159
+ return Traits::getL(m_matrix);
160
+ }
161
+
162
+ /** \returns the permutation matrix P as a transposition sequence.
163
+ */
164
+ inline const TranspositionType& transpositionsP() const
165
+ {
166
+ eigen_assert(m_isInitialized && "LDLT is not initialized.");
167
+ return m_transpositions;
168
+ }
169
+
170
+ /** \returns the coefficients of the diagonal matrix D */
171
+ inline Diagonal<const MatrixType> vectorD() const
172
+ {
173
+ eigen_assert(m_isInitialized && "LDLT is not initialized.");
174
+ return m_matrix.diagonal();
175
+ }
176
+
177
+ /** \returns true if the matrix is positive (semidefinite) */
178
+ inline bool isPositive() const
179
+ {
180
+ eigen_assert(m_isInitialized && "LDLT is not initialized.");
181
+ return m_sign == internal::PositiveSemiDef || m_sign == internal::ZeroSign;
182
+ }
183
+
184
+ /** \returns true if the matrix is negative (semidefinite) */
185
+ inline bool isNegative(void) const
186
+ {
187
+ eigen_assert(m_isInitialized && "LDLT is not initialized.");
188
+ return m_sign == internal::NegativeSemiDef || m_sign == internal::ZeroSign;
189
+ }
190
+
191
+ #ifdef EIGEN_PARSED_BY_DOXYGEN
192
+ /** \returns a solution x of \f$ A x = b \f$ using the current decomposition of A.
193
+ *
194
+ * This function also supports in-place solves using the syntax <tt>x = decompositionObject.solve(x)</tt> .
195
+ *
196
+ * \note_about_checking_solutions
197
+ *
198
+ * More precisely, this method solves \f$ A x = b \f$ using the decomposition \f$ A = P^T L D L^* P \f$
199
+ * by solving the systems \f$ P^T y_1 = b \f$, \f$ L y_2 = y_1 \f$, \f$ D y_3 = y_2 \f$,
200
+ * \f$ L^* y_4 = y_3 \f$ and \f$ P x = y_4 \f$ in succession. If the matrix \f$ A \f$ is singular, then
201
+ * \f$ D \f$ will also be singular (all the other matrices are invertible). In that case, the
202
+ * least-square solution of \f$ D y_3 = y_2 \f$ is computed. This does not mean that this function
203
+ * computes the least-square solution of \f$ A x = b \f$ if \f$ A \f$ is singular.
204
+ *
205
+ * \sa MatrixBase::ldlt(), SelfAdjointView::ldlt()
206
+ */
207
+ template<typename Rhs>
208
+ inline const Solve<LDLT, Rhs>
209
+ solve(const MatrixBase<Rhs>& b) const;
210
+ #endif
211
+
212
+ template<typename Derived>
213
+ bool solveInPlace(MatrixBase<Derived> &bAndX) const;
214
+
215
+ template<typename InputType>
216
+ LDLT& compute(const EigenBase<InputType>& matrix);
217
+
218
+ /** \returns an estimate of the reciprocal condition number of the matrix of
219
+ * which \c *this is the LDLT decomposition.
220
+ */
221
+ RealScalar rcond() const
222
+ {
223
+ eigen_assert(m_isInitialized && "LDLT is not initialized.");
224
+ return internal::rcond_estimate_helper(m_l1_norm, *this);
225
+ }
226
+
227
+ template <typename Derived>
228
+ LDLT& rankUpdate(const MatrixBase<Derived>& w, const RealScalar& alpha=1);
229
+
230
+ /** \returns the internal LDLT decomposition matrix
231
+ *
232
+ * TODO: document the storage layout
233
+ */
234
+ inline const MatrixType& matrixLDLT() const
235
+ {
236
+ eigen_assert(m_isInitialized && "LDLT is not initialized.");
237
+ return m_matrix;
238
+ }
239
+
240
+ MatrixType reconstructedMatrix() const;
241
+
242
+ /** \returns the adjoint of \c *this, that is, a const reference to the decomposition itself as the underlying matrix is self-adjoint.
243
+ *
244
+ * This method is provided for compatibility with other matrix decompositions, thus enabling generic code such as:
245
+ * \code x = decomposition.adjoint().solve(b) \endcode
246
+ */
247
+ const LDLT& adjoint() const { return *this; };
248
+
249
+ EIGEN_DEVICE_FUNC inline EIGEN_CONSTEXPR Index rows() const EIGEN_NOEXCEPT { return m_matrix.rows(); }
250
+ EIGEN_DEVICE_FUNC inline EIGEN_CONSTEXPR Index cols() const EIGEN_NOEXCEPT { return m_matrix.cols(); }
251
+
252
+ /** \brief Reports whether previous computation was successful.
253
+ *
254
+ * \returns \c Success if computation was successful,
255
+ * \c NumericalIssue if the factorization failed because of a zero pivot.
256
+ */
257
+ ComputationInfo info() const
258
+ {
259
+ eigen_assert(m_isInitialized && "LDLT is not initialized.");
260
+ return m_info;
261
+ }
262
+
263
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
264
+ template<typename RhsType, typename DstType>
265
+ void _solve_impl(const RhsType &rhs, DstType &dst) const;
266
+
267
+ template<bool Conjugate, typename RhsType, typename DstType>
268
+ void _solve_impl_transposed(const RhsType &rhs, DstType &dst) const;
269
+ #endif
270
+
271
+ protected:
272
+
273
+ static void check_template_parameters()
274
+ {
275
+ EIGEN_STATIC_ASSERT_NON_INTEGER(Scalar);
276
+ }
277
+
278
+ /** \internal
279
+ * Used to compute and store the Cholesky decomposition A = L D L^* = U^* D U.
280
+ * The strict upper part is used during the decomposition, the strict lower
281
+ * part correspond to the coefficients of L (its diagonal is equal to 1 and
282
+ * is not stored), and the diagonal entries correspond to D.
283
+ */
284
+ MatrixType m_matrix;
285
+ RealScalar m_l1_norm;
286
+ TranspositionType m_transpositions;
287
+ TmpMatrixType m_temporary;
288
+ internal::SignMatrix m_sign;
289
+ bool m_isInitialized;
290
+ ComputationInfo m_info;
291
+ };
292
+
293
+ namespace internal {
294
+
295
+ template<int UpLo> struct ldlt_inplace;
296
+
297
+ template<> struct ldlt_inplace<Lower>
298
+ {
299
+ template<typename MatrixType, typename TranspositionType, typename Workspace>
300
+ static bool unblocked(MatrixType& mat, TranspositionType& transpositions, Workspace& temp, SignMatrix& sign)
301
+ {
302
+ using std::abs;
303
+ typedef typename MatrixType::Scalar Scalar;
304
+ typedef typename MatrixType::RealScalar RealScalar;
305
+ typedef typename TranspositionType::StorageIndex IndexType;
306
+ eigen_assert(mat.rows()==mat.cols());
307
+ const Index size = mat.rows();
308
+ bool found_zero_pivot = false;
309
+ bool ret = true;
310
+
311
+ if (size <= 1)
312
+ {
313
+ transpositions.setIdentity();
314
+ if(size==0) sign = ZeroSign;
315
+ else if (numext::real(mat.coeff(0,0)) > static_cast<RealScalar>(0) ) sign = PositiveSemiDef;
316
+ else if (numext::real(mat.coeff(0,0)) < static_cast<RealScalar>(0)) sign = NegativeSemiDef;
317
+ else sign = ZeroSign;
318
+ return true;
319
+ }
320
+
321
+ for (Index k = 0; k < size; ++k)
322
+ {
323
+ // Find largest diagonal element
324
+ Index index_of_biggest_in_corner;
325
+ mat.diagonal().tail(size-k).cwiseAbs().maxCoeff(&index_of_biggest_in_corner);
326
+ index_of_biggest_in_corner += k;
327
+
328
+ transpositions.coeffRef(k) = IndexType(index_of_biggest_in_corner);
329
+ if(k != index_of_biggest_in_corner)
330
+ {
331
+ // apply the transposition while taking care to consider only
332
+ // the lower triangular part
333
+ Index s = size-index_of_biggest_in_corner-1; // trailing size after the biggest element
334
+ mat.row(k).head(k).swap(mat.row(index_of_biggest_in_corner).head(k));
335
+ mat.col(k).tail(s).swap(mat.col(index_of_biggest_in_corner).tail(s));
336
+ std::swap(mat.coeffRef(k,k),mat.coeffRef(index_of_biggest_in_corner,index_of_biggest_in_corner));
337
+ for(Index i=k+1;i<index_of_biggest_in_corner;++i)
338
+ {
339
+ Scalar tmp = mat.coeffRef(i,k);
340
+ mat.coeffRef(i,k) = numext::conj(mat.coeffRef(index_of_biggest_in_corner,i));
341
+ mat.coeffRef(index_of_biggest_in_corner,i) = numext::conj(tmp);
342
+ }
343
+ if(NumTraits<Scalar>::IsComplex)
344
+ mat.coeffRef(index_of_biggest_in_corner,k) = numext::conj(mat.coeff(index_of_biggest_in_corner,k));
345
+ }
346
+
347
+ // partition the matrix:
348
+ // A00 | - | -
349
+ // lu = A10 | A11 | -
350
+ // A20 | A21 | A22
351
+ Index rs = size - k - 1;
352
+ Block<MatrixType,Dynamic,1> A21(mat,k+1,k,rs,1);
353
+ Block<MatrixType,1,Dynamic> A10(mat,k,0,1,k);
354
+ Block<MatrixType,Dynamic,Dynamic> A20(mat,k+1,0,rs,k);
355
+
356
+ if(k>0)
357
+ {
358
+ temp.head(k) = mat.diagonal().real().head(k).asDiagonal() * A10.adjoint();
359
+ mat.coeffRef(k,k) -= (A10 * temp.head(k)).value();
360
+ if(rs>0)
361
+ A21.noalias() -= A20 * temp.head(k);
362
+ }
363
+
364
+ // In some previous versions of Eigen (e.g., 3.2.1), the scaling was omitted if the pivot
365
+ // was smaller than the cutoff value. However, since LDLT is not rank-revealing
366
+ // we should only make sure that we do not introduce INF or NaN values.
367
+ // Remark that LAPACK also uses 0 as the cutoff value.
368
+ RealScalar realAkk = numext::real(mat.coeffRef(k,k));
369
+ bool pivot_is_valid = (abs(realAkk) > RealScalar(0));
370
+
371
+ if(k==0 && !pivot_is_valid)
372
+ {
373
+ // The entire diagonal is zero, there is nothing more to do
374
+ // except filling the transpositions, and checking whether the matrix is zero.
375
+ sign = ZeroSign;
376
+ for(Index j = 0; j<size; ++j)
377
+ {
378
+ transpositions.coeffRef(j) = IndexType(j);
379
+ ret = ret && (mat.col(j).tail(size-j-1).array()==Scalar(0)).all();
380
+ }
381
+ return ret;
382
+ }
383
+
384
+ if((rs>0) && pivot_is_valid)
385
+ A21 /= realAkk;
386
+ else if(rs>0)
387
+ ret = ret && (A21.array()==Scalar(0)).all();
388
+
389
+ if(found_zero_pivot && pivot_is_valid) ret = false; // factorization failed
390
+ else if(!pivot_is_valid) found_zero_pivot = true;
391
+
392
+ if (sign == PositiveSemiDef) {
393
+ if (realAkk < static_cast<RealScalar>(0)) sign = Indefinite;
394
+ } else if (sign == NegativeSemiDef) {
395
+ if (realAkk > static_cast<RealScalar>(0)) sign = Indefinite;
396
+ } else if (sign == ZeroSign) {
397
+ if (realAkk > static_cast<RealScalar>(0)) sign = PositiveSemiDef;
398
+ else if (realAkk < static_cast<RealScalar>(0)) sign = NegativeSemiDef;
399
+ }
400
+ }
401
+
402
+ return ret;
403
+ }
404
+
405
+ // Reference for the algorithm: Davis and Hager, "Multiple Rank
406
+ // Modifications of a Sparse Cholesky Factorization" (Algorithm 1)
407
+ // Trivial rearrangements of their computations (Timothy E. Holy)
408
+ // allow their algorithm to work for rank-1 updates even if the
409
+ // original matrix is not of full rank.
410
+ // Here only rank-1 updates are implemented, to reduce the
411
+ // requirement for intermediate storage and improve accuracy
412
+ template<typename MatrixType, typename WDerived>
413
+ static bool updateInPlace(MatrixType& mat, MatrixBase<WDerived>& w, const typename MatrixType::RealScalar& sigma=1)
414
+ {
415
+ using numext::isfinite;
416
+ typedef typename MatrixType::Scalar Scalar;
417
+ typedef typename MatrixType::RealScalar RealScalar;
418
+
419
+ const Index size = mat.rows();
420
+ eigen_assert(mat.cols() == size && w.size()==size);
421
+
422
+ RealScalar alpha = 1;
423
+
424
+ // Apply the update
425
+ for (Index j = 0; j < size; j++)
426
+ {
427
+ // Check for termination due to an original decomposition of low-rank
428
+ if (!(isfinite)(alpha))
429
+ break;
430
+
431
+ // Update the diagonal terms
432
+ RealScalar dj = numext::real(mat.coeff(j,j));
433
+ Scalar wj = w.coeff(j);
434
+ RealScalar swj2 = sigma*numext::abs2(wj);
435
+ RealScalar gamma = dj*alpha + swj2;
436
+
437
+ mat.coeffRef(j,j) += swj2/alpha;
438
+ alpha += swj2/dj;
439
+
440
+
441
+ // Update the terms of L
442
+ Index rs = size-j-1;
443
+ w.tail(rs) -= wj * mat.col(j).tail(rs);
444
+ if(gamma != 0)
445
+ mat.col(j).tail(rs) += (sigma*numext::conj(wj)/gamma)*w.tail(rs);
446
+ }
447
+ return true;
448
+ }
449
+
450
+ template<typename MatrixType, typename TranspositionType, typename Workspace, typename WType>
451
+ static bool update(MatrixType& mat, const TranspositionType& transpositions, Workspace& tmp, const WType& w, const typename MatrixType::RealScalar& sigma=1)
452
+ {
453
+ // Apply the permutation to the input w
454
+ tmp = transpositions * w;
455
+
456
+ return ldlt_inplace<Lower>::updateInPlace(mat,tmp,sigma);
457
+ }
458
+ };
459
+
460
+ template<> struct ldlt_inplace<Upper>
461
+ {
462
+ template<typename MatrixType, typename TranspositionType, typename Workspace>
463
+ static EIGEN_STRONG_INLINE bool unblocked(MatrixType& mat, TranspositionType& transpositions, Workspace& temp, SignMatrix& sign)
464
+ {
465
+ Transpose<MatrixType> matt(mat);
466
+ return ldlt_inplace<Lower>::unblocked(matt, transpositions, temp, sign);
467
+ }
468
+
469
+ template<typename MatrixType, typename TranspositionType, typename Workspace, typename WType>
470
+ static EIGEN_STRONG_INLINE bool update(MatrixType& mat, TranspositionType& transpositions, Workspace& tmp, WType& w, const typename MatrixType::RealScalar& sigma=1)
471
+ {
472
+ Transpose<MatrixType> matt(mat);
473
+ return ldlt_inplace<Lower>::update(matt, transpositions, tmp, w.conjugate(), sigma);
474
+ }
475
+ };
476
+
477
+ template<typename MatrixType> struct LDLT_Traits<MatrixType,Lower>
478
+ {
479
+ typedef const TriangularView<const MatrixType, UnitLower> MatrixL;
480
+ typedef const TriangularView<const typename MatrixType::AdjointReturnType, UnitUpper> MatrixU;
481
+ static inline MatrixL getL(const MatrixType& m) { return MatrixL(m); }
482
+ static inline MatrixU getU(const MatrixType& m) { return MatrixU(m.adjoint()); }
483
+ };
484
+
485
+ template<typename MatrixType> struct LDLT_Traits<MatrixType,Upper>
486
+ {
487
+ typedef const TriangularView<const typename MatrixType::AdjointReturnType, UnitLower> MatrixL;
488
+ typedef const TriangularView<const MatrixType, UnitUpper> MatrixU;
489
+ static inline MatrixL getL(const MatrixType& m) { return MatrixL(m.adjoint()); }
490
+ static inline MatrixU getU(const MatrixType& m) { return MatrixU(m); }
491
+ };
492
+
493
+ } // end namespace internal
494
+
495
+ /** Compute / recompute the LDLT decomposition A = L D L^* = U^* D U of \a matrix
496
+ */
497
+ template<typename MatrixType, int _UpLo>
498
+ template<typename InputType>
499
+ LDLT<MatrixType,_UpLo>& LDLT<MatrixType,_UpLo>::compute(const EigenBase<InputType>& a)
500
+ {
501
+ check_template_parameters();
502
+
503
+ eigen_assert(a.rows()==a.cols());
504
+ const Index size = a.rows();
505
+
506
+ m_matrix = a.derived();
507
+
508
+ // Compute matrix L1 norm = max abs column sum.
509
+ m_l1_norm = RealScalar(0);
510
+ // TODO move this code to SelfAdjointView
511
+ for (Index col = 0; col < size; ++col) {
512
+ RealScalar abs_col_sum;
513
+ if (_UpLo == Lower)
514
+ abs_col_sum = m_matrix.col(col).tail(size - col).template lpNorm<1>() + m_matrix.row(col).head(col).template lpNorm<1>();
515
+ else
516
+ abs_col_sum = m_matrix.col(col).head(col).template lpNorm<1>() + m_matrix.row(col).tail(size - col).template lpNorm<1>();
517
+ if (abs_col_sum > m_l1_norm)
518
+ m_l1_norm = abs_col_sum;
519
+ }
520
+
521
+ m_transpositions.resize(size);
522
+ m_isInitialized = false;
523
+ m_temporary.resize(size);
524
+ m_sign = internal::ZeroSign;
525
+
526
+ m_info = internal::ldlt_inplace<UpLo>::unblocked(m_matrix, m_transpositions, m_temporary, m_sign) ? Success : NumericalIssue;
527
+
528
+ m_isInitialized = true;
529
+ return *this;
530
+ }
531
+
532
+ /** Update the LDLT decomposition: given A = L D L^T, efficiently compute the decomposition of A + sigma w w^T.
533
+ * \param w a vector to be incorporated into the decomposition.
534
+ * \param sigma a scalar, +1 for updates and -1 for "downdates," which correspond to removing previously-added column vectors. Optional; default value is +1.
535
+ * \sa setZero()
536
+ */
537
+ template<typename MatrixType, int _UpLo>
538
+ template<typename Derived>
539
+ LDLT<MatrixType,_UpLo>& LDLT<MatrixType,_UpLo>::rankUpdate(const MatrixBase<Derived>& w, const typename LDLT<MatrixType,_UpLo>::RealScalar& sigma)
540
+ {
541
+ typedef typename TranspositionType::StorageIndex IndexType;
542
+ const Index size = w.rows();
543
+ if (m_isInitialized)
544
+ {
545
+ eigen_assert(m_matrix.rows()==size);
546
+ }
547
+ else
548
+ {
549
+ m_matrix.resize(size,size);
550
+ m_matrix.setZero();
551
+ m_transpositions.resize(size);
552
+ for (Index i = 0; i < size; i++)
553
+ m_transpositions.coeffRef(i) = IndexType(i);
554
+ m_temporary.resize(size);
555
+ m_sign = sigma>=0 ? internal::PositiveSemiDef : internal::NegativeSemiDef;
556
+ m_isInitialized = true;
557
+ }
558
+
559
+ internal::ldlt_inplace<UpLo>::update(m_matrix, m_transpositions, m_temporary, w, sigma);
560
+
561
+ return *this;
562
+ }
563
+
564
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
565
+ template<typename _MatrixType, int _UpLo>
566
+ template<typename RhsType, typename DstType>
567
+ void LDLT<_MatrixType,_UpLo>::_solve_impl(const RhsType &rhs, DstType &dst) const
568
+ {
569
+ _solve_impl_transposed<true>(rhs, dst);
570
+ }
571
+
572
+ template<typename _MatrixType,int _UpLo>
573
+ template<bool Conjugate, typename RhsType, typename DstType>
574
+ void LDLT<_MatrixType,_UpLo>::_solve_impl_transposed(const RhsType &rhs, DstType &dst) const
575
+ {
576
+ // dst = P b
577
+ dst = m_transpositions * rhs;
578
+
579
+ // dst = L^-1 (P b)
580
+ // dst = L^-*T (P b)
581
+ matrixL().template conjugateIf<!Conjugate>().solveInPlace(dst);
582
+
583
+ // dst = D^-* (L^-1 P b)
584
+ // dst = D^-1 (L^-*T P b)
585
+ // more precisely, use pseudo-inverse of D (see bug 241)
586
+ using std::abs;
587
+ const typename Diagonal<const MatrixType>::RealReturnType vecD(vectorD());
588
+ // In some previous versions, tolerance was set to the max of 1/highest (or rather numeric_limits::min())
589
+ // and the maximal diagonal entry * epsilon as motivated by LAPACK's xGELSS:
590
+ // RealScalar tolerance = numext::maxi(vecD.array().abs().maxCoeff() * NumTraits<RealScalar>::epsilon(),RealScalar(1) / NumTraits<RealScalar>::highest());
591
+ // However, LDLT is not rank revealing, and so adjusting the tolerance wrt to the highest
592
+ // diagonal element is not well justified and leads to numerical issues in some cases.
593
+ // Moreover, Lapack's xSYTRS routines use 0 for the tolerance.
594
+ // Using numeric_limits::min() gives us more robustness to denormals.
595
+ RealScalar tolerance = (std::numeric_limits<RealScalar>::min)();
596
+ for (Index i = 0; i < vecD.size(); ++i)
597
+ {
598
+ if(abs(vecD(i)) > tolerance)
599
+ dst.row(i) /= vecD(i);
600
+ else
601
+ dst.row(i).setZero();
602
+ }
603
+
604
+ // dst = L^-* (D^-* L^-1 P b)
605
+ // dst = L^-T (D^-1 L^-*T P b)
606
+ matrixL().transpose().template conjugateIf<Conjugate>().solveInPlace(dst);
607
+
608
+ // dst = P^T (L^-* D^-* L^-1 P b) = A^-1 b
609
+ // dst = P^-T (L^-T D^-1 L^-*T P b) = A^-1 b
610
+ dst = m_transpositions.transpose() * dst;
611
+ }
612
+ #endif
613
+
614
+ /** \internal use x = ldlt_object.solve(x);
615
+ *
616
+ * This is the \em in-place version of solve().
617
+ *
618
+ * \param bAndX represents both the right-hand side matrix b and result x.
619
+ *
620
+ * \returns true always! If you need to check for existence of solutions, use another decomposition like LU, QR, or SVD.
621
+ *
622
+ * This version avoids a copy when the right hand side matrix b is not
623
+ * needed anymore.
624
+ *
625
+ * \sa LDLT::solve(), MatrixBase::ldlt()
626
+ */
627
+ template<typename MatrixType,int _UpLo>
628
+ template<typename Derived>
629
+ bool LDLT<MatrixType,_UpLo>::solveInPlace(MatrixBase<Derived> &bAndX) const
630
+ {
631
+ eigen_assert(m_isInitialized && "LDLT is not initialized.");
632
+ eigen_assert(m_matrix.rows() == bAndX.rows());
633
+
634
+ bAndX = this->solve(bAndX);
635
+
636
+ return true;
637
+ }
638
+
639
+ /** \returns the matrix represented by the decomposition,
640
+ * i.e., it returns the product: P^T L D L^* P.
641
+ * This function is provided for debug purpose. */
642
+ template<typename MatrixType, int _UpLo>
643
+ MatrixType LDLT<MatrixType,_UpLo>::reconstructedMatrix() const
644
+ {
645
+ eigen_assert(m_isInitialized && "LDLT is not initialized.");
646
+ const Index size = m_matrix.rows();
647
+ MatrixType res(size,size);
648
+
649
+ // P
650
+ res.setIdentity();
651
+ res = transpositionsP() * res;
652
+ // L^* P
653
+ res = matrixU() * res;
654
+ // D(L^*P)
655
+ res = vectorD().real().asDiagonal() * res;
656
+ // L(DL^*P)
657
+ res = matrixL() * res;
658
+ // P^T (LDL^*P)
659
+ res = transpositionsP().transpose() * res;
660
+
661
+ return res;
662
+ }
663
+
664
+ /** \cholesky_module
665
+ * \returns the Cholesky decomposition with full pivoting without square root of \c *this
666
+ * \sa MatrixBase::ldlt()
667
+ */
668
+ template<typename MatrixType, unsigned int UpLo>
669
+ inline const LDLT<typename SelfAdjointView<MatrixType, UpLo>::PlainObject, UpLo>
670
+ SelfAdjointView<MatrixType, UpLo>::ldlt() const
671
+ {
672
+ return LDLT<PlainObject,UpLo>(m_matrix);
673
+ }
674
+
675
+ /** \cholesky_module
676
+ * \returns the Cholesky decomposition with full pivoting without square root of \c *this
677
+ * \sa SelfAdjointView::ldlt()
678
+ */
679
+ template<typename Derived>
680
+ inline const LDLT<typename MatrixBase<Derived>::PlainObject>
681
+ MatrixBase<Derived>::ldlt() const
682
+ {
683
+ return LDLT<PlainObject>(derived());
684
+ }
685
+
686
+ } // end namespace Eigen
687
+
688
+ #endif // EIGEN_LDLT_H