umappp 0.1.2

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Files changed (395) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +25 -0
  3. data/README.md +110 -0
  4. data/ext/umappp/extconf.rb +25 -0
  5. data/ext/umappp/numo.hpp +867 -0
  6. data/ext/umappp/umappp.cpp +225 -0
  7. data/lib/umappp/version.rb +5 -0
  8. data/lib/umappp.rb +41 -0
  9. data/vendor/Eigen/Cholesky +45 -0
  10. data/vendor/Eigen/CholmodSupport +48 -0
  11. data/vendor/Eigen/Core +384 -0
  12. data/vendor/Eigen/Dense +7 -0
  13. data/vendor/Eigen/Eigen +2 -0
  14. data/vendor/Eigen/Eigenvalues +60 -0
  15. data/vendor/Eigen/Geometry +59 -0
  16. data/vendor/Eigen/Householder +29 -0
  17. data/vendor/Eigen/IterativeLinearSolvers +48 -0
  18. data/vendor/Eigen/Jacobi +32 -0
  19. data/vendor/Eigen/KLUSupport +41 -0
  20. data/vendor/Eigen/LU +47 -0
  21. data/vendor/Eigen/MetisSupport +35 -0
  22. data/vendor/Eigen/OrderingMethods +70 -0
  23. data/vendor/Eigen/PaStiXSupport +49 -0
  24. data/vendor/Eigen/PardisoSupport +35 -0
  25. data/vendor/Eigen/QR +50 -0
  26. data/vendor/Eigen/QtAlignedMalloc +39 -0
  27. data/vendor/Eigen/SPQRSupport +34 -0
  28. data/vendor/Eigen/SVD +50 -0
  29. data/vendor/Eigen/Sparse +34 -0
  30. data/vendor/Eigen/SparseCholesky +37 -0
  31. data/vendor/Eigen/SparseCore +69 -0
  32. data/vendor/Eigen/SparseLU +50 -0
  33. data/vendor/Eigen/SparseQR +36 -0
  34. data/vendor/Eigen/StdDeque +27 -0
  35. data/vendor/Eigen/StdList +26 -0
  36. data/vendor/Eigen/StdVector +27 -0
  37. data/vendor/Eigen/SuperLUSupport +64 -0
  38. data/vendor/Eigen/UmfPackSupport +40 -0
  39. data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
  40. data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
  41. data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  42. data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
  43. data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
  44. data/vendor/Eigen/src/Core/Array.h +417 -0
  45. data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
  46. data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
  47. data/vendor/Eigen/src/Core/Assign.h +90 -0
  48. data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
  49. data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
  50. data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
  51. data/vendor/Eigen/src/Core/Block.h +448 -0
  52. data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
  53. data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
  54. data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
  55. data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
  56. data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
  57. data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
  58. data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
  59. data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  60. data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  61. data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
  62. data/vendor/Eigen/src/Core/DenseBase.h +701 -0
  63. data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
  64. data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
  65. data/vendor/Eigen/src/Core/Diagonal.h +258 -0
  66. data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
  67. data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
  68. data/vendor/Eigen/src/Core/Dot.h +318 -0
  69. data/vendor/Eigen/src/Core/EigenBase.h +160 -0
  70. data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
  71. data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
  72. data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
  73. data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
  74. data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
  75. data/vendor/Eigen/src/Core/IO.h +258 -0
  76. data/vendor/Eigen/src/Core/IndexedView.h +237 -0
  77. data/vendor/Eigen/src/Core/Inverse.h +117 -0
  78. data/vendor/Eigen/src/Core/Map.h +171 -0
  79. data/vendor/Eigen/src/Core/MapBase.h +310 -0
  80. data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
  81. data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
  82. data/vendor/Eigen/src/Core/Matrix.h +565 -0
  83. data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
  84. data/vendor/Eigen/src/Core/NestByValue.h +85 -0
  85. data/vendor/Eigen/src/Core/NoAlias.h +109 -0
  86. data/vendor/Eigen/src/Core/NumTraits.h +335 -0
  87. data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  88. data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
  89. data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
  90. data/vendor/Eigen/src/Core/Product.h +191 -0
  91. data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
  92. data/vendor/Eigen/src/Core/Random.h +218 -0
  93. data/vendor/Eigen/src/Core/Redux.h +515 -0
  94. data/vendor/Eigen/src/Core/Ref.h +381 -0
  95. data/vendor/Eigen/src/Core/Replicate.h +142 -0
  96. data/vendor/Eigen/src/Core/Reshaped.h +454 -0
  97. data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
  98. data/vendor/Eigen/src/Core/Reverse.h +217 -0
  99. data/vendor/Eigen/src/Core/Select.h +164 -0
  100. data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
  101. data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  102. data/vendor/Eigen/src/Core/Solve.h +188 -0
  103. data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
  104. data/vendor/Eigen/src/Core/SolverBase.h +168 -0
  105. data/vendor/Eigen/src/Core/StableNorm.h +251 -0
  106. data/vendor/Eigen/src/Core/StlIterators.h +463 -0
  107. data/vendor/Eigen/src/Core/Stride.h +116 -0
  108. data/vendor/Eigen/src/Core/Swap.h +68 -0
  109. data/vendor/Eigen/src/Core/Transpose.h +464 -0
  110. data/vendor/Eigen/src/Core/Transpositions.h +386 -0
  111. data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
  112. data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
  113. data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
  114. data/vendor/Eigen/src/Core/Visitor.h +381 -0
  115. data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
  116. data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
  117. data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
  118. data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
  119. data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  120. data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
  121. data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
  122. data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  123. data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
  124. data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
  125. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  126. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  127. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  128. data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
  129. data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
  130. data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  131. data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
  132. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  133. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  134. data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
  135. data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
  136. data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  137. data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
  138. data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  139. data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  140. data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  141. data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  142. data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  143. data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  144. data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
  145. data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  146. data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
  147. data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
  148. data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  149. data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
  150. data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
  151. data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
  152. data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
  153. data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  154. data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  155. data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  156. data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  157. data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  158. data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  159. data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  160. data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  161. data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
  162. data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
  163. data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
  164. data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
  165. data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
  166. data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
  167. data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
  168. data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  169. data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
  170. data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
  171. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
  172. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
  173. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  174. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
  175. data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
  176. data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  177. data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
  178. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
  179. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
  180. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
  181. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  182. data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  183. data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
  184. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
  185. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
  186. data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  187. data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  188. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
  189. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
  190. data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
  191. data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
  192. data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  193. data/vendor/Eigen/src/Core/util/Constants.h +563 -0
  194. data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
  195. data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
  196. data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  197. data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
  198. data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
  199. data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
  200. data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
  201. data/vendor/Eigen/src/Core/util/Meta.h +812 -0
  202. data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
  203. data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
  204. data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  205. data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
  206. data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  207. data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
  208. data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  209. data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
  210. data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  211. data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  212. data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  213. data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  214. data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  215. data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  216. data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
  217. data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
  218. data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  219. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
  220. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  221. data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
  222. data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
  223. data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
  224. data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
  225. data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
  226. data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
  227. data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
  228. data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
  229. data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
  230. data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
  231. data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
  232. data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
  233. data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
  234. data/vendor/Eigen/src/Geometry/Translation.h +202 -0
  235. data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
  236. data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  237. data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
  238. data/vendor/Eigen/src/Householder/Householder.h +176 -0
  239. data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
  240. data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  241. data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
  242. data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
  243. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
  244. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
  245. data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
  246. data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
  247. data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
  248. data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
  249. data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  250. data/vendor/Eigen/src/LU/Determinant.h +117 -0
  251. data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
  252. data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
  253. data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
  254. data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  255. data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
  256. data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  257. data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
  258. data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
  259. data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
  260. data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  261. data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
  262. data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
  263. data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  264. data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
  265. data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
  266. data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
  267. data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  268. data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
  269. data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
  270. data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
  271. data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  272. data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
  273. data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  274. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
  275. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
  276. data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
  277. data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
  278. data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  279. data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  280. data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
  281. data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
  282. data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  283. data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
  284. data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
  285. data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
  286. data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
  287. data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  288. data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
  289. data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  290. data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
  291. data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
  292. data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
  293. data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  294. data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
  295. data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
  296. data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
  297. data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
  298. data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  299. data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  300. data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  301. data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  302. data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
  303. data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
  304. data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
  305. data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  306. data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
  307. data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  308. data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  309. data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  310. data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
  311. data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  312. data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  313. data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  314. data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  315. data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  316. data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  317. data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  318. data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  319. data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  320. data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  321. data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  322. data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  323. data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
  324. data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
  325. data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
  326. data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
  327. data/vendor/Eigen/src/StlSupport/details.h +84 -0
  328. data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
  329. data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
  330. data/vendor/Eigen/src/misc/Image.h +82 -0
  331. data/vendor/Eigen/src/misc/Kernel.h +79 -0
  332. data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
  333. data/vendor/Eigen/src/misc/blas.h +440 -0
  334. data/vendor/Eigen/src/misc/lapack.h +152 -0
  335. data/vendor/Eigen/src/misc/lapacke.h +16292 -0
  336. data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
  337. data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
  338. data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
  339. data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
  340. data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  341. data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
  342. data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  343. data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  344. data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
  345. data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
  346. data/vendor/aarand/aarand.hpp +114 -0
  347. data/vendor/annoy/annoylib.h +1495 -0
  348. data/vendor/annoy/kissrandom.h +120 -0
  349. data/vendor/annoy/mman.h +242 -0
  350. data/vendor/hnswlib/bruteforce.h +152 -0
  351. data/vendor/hnswlib/hnswalg.h +1192 -0
  352. data/vendor/hnswlib/hnswlib.h +108 -0
  353. data/vendor/hnswlib/space_ip.h +282 -0
  354. data/vendor/hnswlib/space_l2.h +281 -0
  355. data/vendor/hnswlib/visited_list_pool.h +79 -0
  356. data/vendor/irlba/irlba.hpp +575 -0
  357. data/vendor/irlba/lanczos.hpp +212 -0
  358. data/vendor/irlba/parallel.hpp +474 -0
  359. data/vendor/irlba/utils.hpp +224 -0
  360. data/vendor/irlba/wrappers.hpp +228 -0
  361. data/vendor/kmeans/Base.hpp +75 -0
  362. data/vendor/kmeans/Details.hpp +79 -0
  363. data/vendor/kmeans/HartiganWong.hpp +492 -0
  364. data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
  365. data/vendor/kmeans/InitializeNone.hpp +44 -0
  366. data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
  367. data/vendor/kmeans/InitializeRandom.hpp +91 -0
  368. data/vendor/kmeans/Kmeans.hpp +161 -0
  369. data/vendor/kmeans/Lloyd.hpp +134 -0
  370. data/vendor/kmeans/MiniBatch.hpp +269 -0
  371. data/vendor/kmeans/QuickSearch.hpp +179 -0
  372. data/vendor/kmeans/compute_centroids.hpp +32 -0
  373. data/vendor/kmeans/compute_wcss.hpp +27 -0
  374. data/vendor/kmeans/is_edge_case.hpp +42 -0
  375. data/vendor/kmeans/random.hpp +55 -0
  376. data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
  377. data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
  378. data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
  379. data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
  380. data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
  381. data/vendor/knncolle/knncolle.hpp +34 -0
  382. data/vendor/knncolle/utils/Base.hpp +100 -0
  383. data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
  384. data/vendor/knncolle/utils/distances.hpp +98 -0
  385. data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
  386. data/vendor/powerit/PowerIterations.hpp +157 -0
  387. data/vendor/umappp/NeighborList.hpp +37 -0
  388. data/vendor/umappp/Umap.hpp +662 -0
  389. data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
  390. data/vendor/umappp/find_ab.hpp +157 -0
  391. data/vendor/umappp/neighbor_similarities.hpp +136 -0
  392. data/vendor/umappp/optimize_layout.hpp +285 -0
  393. data/vendor/umappp/spectral_init.hpp +181 -0
  394. data/vendor/umappp/umappp.hpp +13 -0
  395. metadata +465 -0
@@ -0,0 +1,517 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008-2009 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_GENERAL_MATRIX_MATRIX_H
11
+ #define EIGEN_GENERAL_MATRIX_MATRIX_H
12
+
13
+ namespace Eigen {
14
+
15
+ namespace internal {
16
+
17
+ template<typename _LhsScalar, typename _RhsScalar> class level3_blocking;
18
+
19
+ /* Specialization for a row-major destination matrix => simple transposition of the product */
20
+ template<
21
+ typename Index,
22
+ typename LhsScalar, int LhsStorageOrder, bool ConjugateLhs,
23
+ typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs,
24
+ int ResInnerStride>
25
+ struct general_matrix_matrix_product<Index,LhsScalar,LhsStorageOrder,ConjugateLhs,RhsScalar,RhsStorageOrder,ConjugateRhs,RowMajor,ResInnerStride>
26
+ {
27
+ typedef gebp_traits<RhsScalar,LhsScalar> Traits;
28
+
29
+ typedef typename ScalarBinaryOpTraits<LhsScalar, RhsScalar>::ReturnType ResScalar;
30
+ static EIGEN_STRONG_INLINE void run(
31
+ Index rows, Index cols, Index depth,
32
+ const LhsScalar* lhs, Index lhsStride,
33
+ const RhsScalar* rhs, Index rhsStride,
34
+ ResScalar* res, Index resIncr, Index resStride,
35
+ ResScalar alpha,
36
+ level3_blocking<RhsScalar,LhsScalar>& blocking,
37
+ GemmParallelInfo<Index>* info = 0)
38
+ {
39
+ // transpose the product such that the result is column major
40
+ general_matrix_matrix_product<Index,
41
+ RhsScalar, RhsStorageOrder==RowMajor ? ColMajor : RowMajor, ConjugateRhs,
42
+ LhsScalar, LhsStorageOrder==RowMajor ? ColMajor : RowMajor, ConjugateLhs,
43
+ ColMajor,ResInnerStride>
44
+ ::run(cols,rows,depth,rhs,rhsStride,lhs,lhsStride,res,resIncr,resStride,alpha,blocking,info);
45
+ }
46
+ };
47
+
48
+ /* Specialization for a col-major destination matrix
49
+ * => Blocking algorithm following Goto's paper */
50
+ template<
51
+ typename Index,
52
+ typename LhsScalar, int LhsStorageOrder, bool ConjugateLhs,
53
+ typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs,
54
+ int ResInnerStride>
55
+ struct general_matrix_matrix_product<Index,LhsScalar,LhsStorageOrder,ConjugateLhs,RhsScalar,RhsStorageOrder,ConjugateRhs,ColMajor,ResInnerStride>
56
+ {
57
+
58
+ typedef gebp_traits<LhsScalar,RhsScalar> Traits;
59
+
60
+ typedef typename ScalarBinaryOpTraits<LhsScalar, RhsScalar>::ReturnType ResScalar;
61
+ static void run(Index rows, Index cols, Index depth,
62
+ const LhsScalar* _lhs, Index lhsStride,
63
+ const RhsScalar* _rhs, Index rhsStride,
64
+ ResScalar* _res, Index resIncr, Index resStride,
65
+ ResScalar alpha,
66
+ level3_blocking<LhsScalar,RhsScalar>& blocking,
67
+ GemmParallelInfo<Index>* info = 0)
68
+ {
69
+ typedef const_blas_data_mapper<LhsScalar, Index, LhsStorageOrder> LhsMapper;
70
+ typedef const_blas_data_mapper<RhsScalar, Index, RhsStorageOrder> RhsMapper;
71
+ typedef blas_data_mapper<typename Traits::ResScalar, Index, ColMajor,Unaligned,ResInnerStride> ResMapper;
72
+ LhsMapper lhs(_lhs, lhsStride);
73
+ RhsMapper rhs(_rhs, rhsStride);
74
+ ResMapper res(_res, resStride, resIncr);
75
+
76
+ Index kc = blocking.kc(); // cache block size along the K direction
77
+ Index mc = (std::min)(rows,blocking.mc()); // cache block size along the M direction
78
+ Index nc = (std::min)(cols,blocking.nc()); // cache block size along the N direction
79
+
80
+ gemm_pack_lhs<LhsScalar, Index, LhsMapper, Traits::mr, Traits::LhsProgress, typename Traits::LhsPacket4Packing, LhsStorageOrder> pack_lhs;
81
+ gemm_pack_rhs<RhsScalar, Index, RhsMapper, Traits::nr, RhsStorageOrder> pack_rhs;
82
+ gebp_kernel<LhsScalar, RhsScalar, Index, ResMapper, Traits::mr, Traits::nr, ConjugateLhs, ConjugateRhs> gebp;
83
+
84
+ #ifdef EIGEN_HAS_OPENMP
85
+ if(info)
86
+ {
87
+ // this is the parallel version!
88
+ int tid = omp_get_thread_num();
89
+ int threads = omp_get_num_threads();
90
+
91
+ LhsScalar* blockA = blocking.blockA();
92
+ eigen_internal_assert(blockA!=0);
93
+
94
+ std::size_t sizeB = kc*nc;
95
+ ei_declare_aligned_stack_constructed_variable(RhsScalar, blockB, sizeB, 0);
96
+
97
+ // For each horizontal panel of the rhs, and corresponding vertical panel of the lhs...
98
+ for(Index k=0; k<depth; k+=kc)
99
+ {
100
+ const Index actual_kc = (std::min)(k+kc,depth)-k; // => rows of B', and cols of the A'
101
+
102
+ // In order to reduce the chance that a thread has to wait for the other,
103
+ // let's start by packing B'.
104
+ pack_rhs(blockB, rhs.getSubMapper(k,0), actual_kc, nc);
105
+
106
+ // Pack A_k to A' in a parallel fashion:
107
+ // each thread packs the sub block A_k,i to A'_i where i is the thread id.
108
+
109
+ // However, before copying to A'_i, we have to make sure that no other thread is still using it,
110
+ // i.e., we test that info[tid].users equals 0.
111
+ // Then, we set info[tid].users to the number of threads to mark that all other threads are going to use it.
112
+ while(info[tid].users!=0) {}
113
+ info[tid].users = threads;
114
+
115
+ pack_lhs(blockA+info[tid].lhs_start*actual_kc, lhs.getSubMapper(info[tid].lhs_start,k), actual_kc, info[tid].lhs_length);
116
+
117
+ // Notify the other threads that the part A'_i is ready to go.
118
+ info[tid].sync = k;
119
+
120
+ // Computes C_i += A' * B' per A'_i
121
+ for(int shift=0; shift<threads; ++shift)
122
+ {
123
+ int i = (tid+shift)%threads;
124
+
125
+ // At this point we have to make sure that A'_i has been updated by the thread i,
126
+ // we use testAndSetOrdered to mimic a volatile access.
127
+ // However, no need to wait for the B' part which has been updated by the current thread!
128
+ if (shift>0) {
129
+ while(info[i].sync!=k) {
130
+ }
131
+ }
132
+
133
+ gebp(res.getSubMapper(info[i].lhs_start, 0), blockA+info[i].lhs_start*actual_kc, blockB, info[i].lhs_length, actual_kc, nc, alpha);
134
+ }
135
+
136
+ // Then keep going as usual with the remaining B'
137
+ for(Index j=nc; j<cols; j+=nc)
138
+ {
139
+ const Index actual_nc = (std::min)(j+nc,cols)-j;
140
+
141
+ // pack B_k,j to B'
142
+ pack_rhs(blockB, rhs.getSubMapper(k,j), actual_kc, actual_nc);
143
+
144
+ // C_j += A' * B'
145
+ gebp(res.getSubMapper(0, j), blockA, blockB, rows, actual_kc, actual_nc, alpha);
146
+ }
147
+
148
+ // Release all the sub blocks A'_i of A' for the current thread,
149
+ // i.e., we simply decrement the number of users by 1
150
+ for(Index i=0; i<threads; ++i)
151
+ #if !EIGEN_HAS_CXX11_ATOMIC
152
+ #pragma omp atomic
153
+ #endif
154
+ info[i].users -= 1;
155
+ }
156
+ }
157
+ else
158
+ #endif // EIGEN_HAS_OPENMP
159
+ {
160
+ EIGEN_UNUSED_VARIABLE(info);
161
+
162
+ // this is the sequential version!
163
+ std::size_t sizeA = kc*mc;
164
+ std::size_t sizeB = kc*nc;
165
+
166
+ ei_declare_aligned_stack_constructed_variable(LhsScalar, blockA, sizeA, blocking.blockA());
167
+ ei_declare_aligned_stack_constructed_variable(RhsScalar, blockB, sizeB, blocking.blockB());
168
+
169
+ const bool pack_rhs_once = mc!=rows && kc==depth && nc==cols;
170
+
171
+ // For each horizontal panel of the rhs, and corresponding panel of the lhs...
172
+ for(Index i2=0; i2<rows; i2+=mc)
173
+ {
174
+ const Index actual_mc = (std::min)(i2+mc,rows)-i2;
175
+
176
+ for(Index k2=0; k2<depth; k2+=kc)
177
+ {
178
+ const Index actual_kc = (std::min)(k2+kc,depth)-k2;
179
+
180
+ // OK, here we have selected one horizontal panel of rhs and one vertical panel of lhs.
181
+ // => Pack lhs's panel into a sequential chunk of memory (L2/L3 caching)
182
+ // Note that this panel will be read as many times as the number of blocks in the rhs's
183
+ // horizontal panel which is, in practice, a very low number.
184
+ pack_lhs(blockA, lhs.getSubMapper(i2,k2), actual_kc, actual_mc);
185
+
186
+ // For each kc x nc block of the rhs's horizontal panel...
187
+ for(Index j2=0; j2<cols; j2+=nc)
188
+ {
189
+ const Index actual_nc = (std::min)(j2+nc,cols)-j2;
190
+
191
+ // We pack the rhs's block into a sequential chunk of memory (L2 caching)
192
+ // Note that this block will be read a very high number of times, which is equal to the number of
193
+ // micro horizontal panel of the large rhs's panel (e.g., rows/12 times).
194
+ if((!pack_rhs_once) || i2==0)
195
+ pack_rhs(blockB, rhs.getSubMapper(k2,j2), actual_kc, actual_nc);
196
+
197
+ // Everything is packed, we can now call the panel * block kernel:
198
+ gebp(res.getSubMapper(i2, j2), blockA, blockB, actual_mc, actual_kc, actual_nc, alpha);
199
+ }
200
+ }
201
+ }
202
+ }
203
+ }
204
+
205
+ };
206
+
207
+ /*********************************************************************************
208
+ * Specialization of generic_product_impl for "large" GEMM, i.e.,
209
+ * implementation of the high level wrapper to general_matrix_matrix_product
210
+ **********************************************************************************/
211
+
212
+ template<typename Scalar, typename Index, typename Gemm, typename Lhs, typename Rhs, typename Dest, typename BlockingType>
213
+ struct gemm_functor
214
+ {
215
+ gemm_functor(const Lhs& lhs, const Rhs& rhs, Dest& dest, const Scalar& actualAlpha, BlockingType& blocking)
216
+ : m_lhs(lhs), m_rhs(rhs), m_dest(dest), m_actualAlpha(actualAlpha), m_blocking(blocking)
217
+ {}
218
+
219
+ void initParallelSession(Index num_threads) const
220
+ {
221
+ m_blocking.initParallel(m_lhs.rows(), m_rhs.cols(), m_lhs.cols(), num_threads);
222
+ m_blocking.allocateA();
223
+ }
224
+
225
+ void operator() (Index row, Index rows, Index col=0, Index cols=-1, GemmParallelInfo<Index>* info=0) const
226
+ {
227
+ if(cols==-1)
228
+ cols = m_rhs.cols();
229
+
230
+ Gemm::run(rows, cols, m_lhs.cols(),
231
+ &m_lhs.coeffRef(row,0), m_lhs.outerStride(),
232
+ &m_rhs.coeffRef(0,col), m_rhs.outerStride(),
233
+ (Scalar*)&(m_dest.coeffRef(row,col)), m_dest.innerStride(), m_dest.outerStride(),
234
+ m_actualAlpha, m_blocking, info);
235
+ }
236
+
237
+ typedef typename Gemm::Traits Traits;
238
+
239
+ protected:
240
+ const Lhs& m_lhs;
241
+ const Rhs& m_rhs;
242
+ Dest& m_dest;
243
+ Scalar m_actualAlpha;
244
+ BlockingType& m_blocking;
245
+ };
246
+
247
+ template<int StorageOrder, typename LhsScalar, typename RhsScalar, int MaxRows, int MaxCols, int MaxDepth, int KcFactor=1,
248
+ bool FiniteAtCompileTime = MaxRows!=Dynamic && MaxCols!=Dynamic && MaxDepth != Dynamic> class gemm_blocking_space;
249
+
250
+ template<typename _LhsScalar, typename _RhsScalar>
251
+ class level3_blocking
252
+ {
253
+ typedef _LhsScalar LhsScalar;
254
+ typedef _RhsScalar RhsScalar;
255
+
256
+ protected:
257
+ LhsScalar* m_blockA;
258
+ RhsScalar* m_blockB;
259
+
260
+ Index m_mc;
261
+ Index m_nc;
262
+ Index m_kc;
263
+
264
+ public:
265
+
266
+ level3_blocking()
267
+ : m_blockA(0), m_blockB(0), m_mc(0), m_nc(0), m_kc(0)
268
+ {}
269
+
270
+ inline Index mc() const { return m_mc; }
271
+ inline Index nc() const { return m_nc; }
272
+ inline Index kc() const { return m_kc; }
273
+
274
+ inline LhsScalar* blockA() { return m_blockA; }
275
+ inline RhsScalar* blockB() { return m_blockB; }
276
+ };
277
+
278
+ template<int StorageOrder, typename _LhsScalar, typename _RhsScalar, int MaxRows, int MaxCols, int MaxDepth, int KcFactor>
279
+ class gemm_blocking_space<StorageOrder,_LhsScalar,_RhsScalar,MaxRows, MaxCols, MaxDepth, KcFactor, true /* == FiniteAtCompileTime */>
280
+ : public level3_blocking<
281
+ typename conditional<StorageOrder==RowMajor,_RhsScalar,_LhsScalar>::type,
282
+ typename conditional<StorageOrder==RowMajor,_LhsScalar,_RhsScalar>::type>
283
+ {
284
+ enum {
285
+ Transpose = StorageOrder==RowMajor,
286
+ ActualRows = Transpose ? MaxCols : MaxRows,
287
+ ActualCols = Transpose ? MaxRows : MaxCols
288
+ };
289
+ typedef typename conditional<Transpose,_RhsScalar,_LhsScalar>::type LhsScalar;
290
+ typedef typename conditional<Transpose,_LhsScalar,_RhsScalar>::type RhsScalar;
291
+ typedef gebp_traits<LhsScalar,RhsScalar> Traits;
292
+ enum {
293
+ SizeA = ActualRows * MaxDepth,
294
+ SizeB = ActualCols * MaxDepth
295
+ };
296
+
297
+ #if EIGEN_MAX_STATIC_ALIGN_BYTES >= EIGEN_DEFAULT_ALIGN_BYTES
298
+ EIGEN_ALIGN_MAX LhsScalar m_staticA[SizeA];
299
+ EIGEN_ALIGN_MAX RhsScalar m_staticB[SizeB];
300
+ #else
301
+ EIGEN_ALIGN_MAX char m_staticA[SizeA * sizeof(LhsScalar) + EIGEN_DEFAULT_ALIGN_BYTES-1];
302
+ EIGEN_ALIGN_MAX char m_staticB[SizeB * sizeof(RhsScalar) + EIGEN_DEFAULT_ALIGN_BYTES-1];
303
+ #endif
304
+
305
+ public:
306
+
307
+ gemm_blocking_space(Index /*rows*/, Index /*cols*/, Index /*depth*/, Index /*num_threads*/, bool /*full_rows = false*/)
308
+ {
309
+ this->m_mc = ActualRows;
310
+ this->m_nc = ActualCols;
311
+ this->m_kc = MaxDepth;
312
+ #if EIGEN_MAX_STATIC_ALIGN_BYTES >= EIGEN_DEFAULT_ALIGN_BYTES
313
+ this->m_blockA = m_staticA;
314
+ this->m_blockB = m_staticB;
315
+ #else
316
+ this->m_blockA = reinterpret_cast<LhsScalar*>((internal::UIntPtr(m_staticA) + (EIGEN_DEFAULT_ALIGN_BYTES-1)) & ~std::size_t(EIGEN_DEFAULT_ALIGN_BYTES-1));
317
+ this->m_blockB = reinterpret_cast<RhsScalar*>((internal::UIntPtr(m_staticB) + (EIGEN_DEFAULT_ALIGN_BYTES-1)) & ~std::size_t(EIGEN_DEFAULT_ALIGN_BYTES-1));
318
+ #endif
319
+ }
320
+
321
+ void initParallel(Index, Index, Index, Index)
322
+ {}
323
+
324
+ inline void allocateA() {}
325
+ inline void allocateB() {}
326
+ inline void allocateAll() {}
327
+ };
328
+
329
+ template<int StorageOrder, typename _LhsScalar, typename _RhsScalar, int MaxRows, int MaxCols, int MaxDepth, int KcFactor>
330
+ class gemm_blocking_space<StorageOrder,_LhsScalar,_RhsScalar,MaxRows, MaxCols, MaxDepth, KcFactor, false>
331
+ : public level3_blocking<
332
+ typename conditional<StorageOrder==RowMajor,_RhsScalar,_LhsScalar>::type,
333
+ typename conditional<StorageOrder==RowMajor,_LhsScalar,_RhsScalar>::type>
334
+ {
335
+ enum {
336
+ Transpose = StorageOrder==RowMajor
337
+ };
338
+ typedef typename conditional<Transpose,_RhsScalar,_LhsScalar>::type LhsScalar;
339
+ typedef typename conditional<Transpose,_LhsScalar,_RhsScalar>::type RhsScalar;
340
+ typedef gebp_traits<LhsScalar,RhsScalar> Traits;
341
+
342
+ Index m_sizeA;
343
+ Index m_sizeB;
344
+
345
+ public:
346
+
347
+ gemm_blocking_space(Index rows, Index cols, Index depth, Index num_threads, bool l3_blocking)
348
+ {
349
+ this->m_mc = Transpose ? cols : rows;
350
+ this->m_nc = Transpose ? rows : cols;
351
+ this->m_kc = depth;
352
+
353
+ if(l3_blocking)
354
+ {
355
+ computeProductBlockingSizes<LhsScalar,RhsScalar,KcFactor>(this->m_kc, this->m_mc, this->m_nc, num_threads);
356
+ }
357
+ else // no l3 blocking
358
+ {
359
+ Index n = this->m_nc;
360
+ computeProductBlockingSizes<LhsScalar,RhsScalar,KcFactor>(this->m_kc, this->m_mc, n, num_threads);
361
+ }
362
+
363
+ m_sizeA = this->m_mc * this->m_kc;
364
+ m_sizeB = this->m_kc * this->m_nc;
365
+ }
366
+
367
+ void initParallel(Index rows, Index cols, Index depth, Index num_threads)
368
+ {
369
+ this->m_mc = Transpose ? cols : rows;
370
+ this->m_nc = Transpose ? rows : cols;
371
+ this->m_kc = depth;
372
+
373
+ eigen_internal_assert(this->m_blockA==0 && this->m_blockB==0);
374
+ Index m = this->m_mc;
375
+ computeProductBlockingSizes<LhsScalar,RhsScalar,KcFactor>(this->m_kc, m, this->m_nc, num_threads);
376
+ m_sizeA = this->m_mc * this->m_kc;
377
+ m_sizeB = this->m_kc * this->m_nc;
378
+ }
379
+
380
+ void allocateA()
381
+ {
382
+ if(this->m_blockA==0)
383
+ this->m_blockA = aligned_new<LhsScalar>(m_sizeA);
384
+ }
385
+
386
+ void allocateB()
387
+ {
388
+ if(this->m_blockB==0)
389
+ this->m_blockB = aligned_new<RhsScalar>(m_sizeB);
390
+ }
391
+
392
+ void allocateAll()
393
+ {
394
+ allocateA();
395
+ allocateB();
396
+ }
397
+
398
+ ~gemm_blocking_space()
399
+ {
400
+ aligned_delete(this->m_blockA, m_sizeA);
401
+ aligned_delete(this->m_blockB, m_sizeB);
402
+ }
403
+ };
404
+
405
+ } // end namespace internal
406
+
407
+ namespace internal {
408
+
409
+ template<typename Lhs, typename Rhs>
410
+ struct generic_product_impl<Lhs,Rhs,DenseShape,DenseShape,GemmProduct>
411
+ : generic_product_impl_base<Lhs,Rhs,generic_product_impl<Lhs,Rhs,DenseShape,DenseShape,GemmProduct> >
412
+ {
413
+ typedef typename Product<Lhs,Rhs>::Scalar Scalar;
414
+ typedef typename Lhs::Scalar LhsScalar;
415
+ typedef typename Rhs::Scalar RhsScalar;
416
+
417
+ typedef internal::blas_traits<Lhs> LhsBlasTraits;
418
+ typedef typename LhsBlasTraits::DirectLinearAccessType ActualLhsType;
419
+ typedef typename internal::remove_all<ActualLhsType>::type ActualLhsTypeCleaned;
420
+
421
+ typedef internal::blas_traits<Rhs> RhsBlasTraits;
422
+ typedef typename RhsBlasTraits::DirectLinearAccessType ActualRhsType;
423
+ typedef typename internal::remove_all<ActualRhsType>::type ActualRhsTypeCleaned;
424
+
425
+ enum {
426
+ MaxDepthAtCompileTime = EIGEN_SIZE_MIN_PREFER_FIXED(Lhs::MaxColsAtCompileTime,Rhs::MaxRowsAtCompileTime)
427
+ };
428
+
429
+ typedef generic_product_impl<Lhs,Rhs,DenseShape,DenseShape,CoeffBasedProductMode> lazyproduct;
430
+
431
+ template<typename Dst>
432
+ static void evalTo(Dst& dst, const Lhs& lhs, const Rhs& rhs)
433
+ {
434
+ // See http://eigen.tuxfamily.org/bz/show_bug.cgi?id=404 for a discussion and helper program
435
+ // to determine the following heuristic.
436
+ // EIGEN_GEMM_TO_COEFFBASED_THRESHOLD is typically defined to 20 in GeneralProduct.h,
437
+ // unless it has been specialized by the user or for a given architecture.
438
+ // Note that the condition rhs.rows()>0 was required because lazy product is (was?) not happy with empty inputs.
439
+ // I'm not sure it is still required.
440
+ if((rhs.rows()+dst.rows()+dst.cols())<EIGEN_GEMM_TO_COEFFBASED_THRESHOLD && rhs.rows()>0)
441
+ lazyproduct::eval_dynamic(dst, lhs, rhs, internal::assign_op<typename Dst::Scalar,Scalar>());
442
+ else
443
+ {
444
+ dst.setZero();
445
+ scaleAndAddTo(dst, lhs, rhs, Scalar(1));
446
+ }
447
+ }
448
+
449
+ template<typename Dst>
450
+ static void addTo(Dst& dst, const Lhs& lhs, const Rhs& rhs)
451
+ {
452
+ if((rhs.rows()+dst.rows()+dst.cols())<EIGEN_GEMM_TO_COEFFBASED_THRESHOLD && rhs.rows()>0)
453
+ lazyproduct::eval_dynamic(dst, lhs, rhs, internal::add_assign_op<typename Dst::Scalar,Scalar>());
454
+ else
455
+ scaleAndAddTo(dst,lhs, rhs, Scalar(1));
456
+ }
457
+
458
+ template<typename Dst>
459
+ static void subTo(Dst& dst, const Lhs& lhs, const Rhs& rhs)
460
+ {
461
+ if((rhs.rows()+dst.rows()+dst.cols())<EIGEN_GEMM_TO_COEFFBASED_THRESHOLD && rhs.rows()>0)
462
+ lazyproduct::eval_dynamic(dst, lhs, rhs, internal::sub_assign_op<typename Dst::Scalar,Scalar>());
463
+ else
464
+ scaleAndAddTo(dst, lhs, rhs, Scalar(-1));
465
+ }
466
+
467
+ template<typename Dest>
468
+ static void scaleAndAddTo(Dest& dst, const Lhs& a_lhs, const Rhs& a_rhs, const Scalar& alpha)
469
+ {
470
+ eigen_assert(dst.rows()==a_lhs.rows() && dst.cols()==a_rhs.cols());
471
+ if(a_lhs.cols()==0 || a_lhs.rows()==0 || a_rhs.cols()==0)
472
+ return;
473
+
474
+ if (dst.cols() == 1)
475
+ {
476
+ // Fallback to GEMV if either the lhs or rhs is a runtime vector
477
+ typename Dest::ColXpr dst_vec(dst.col(0));
478
+ return internal::generic_product_impl<Lhs,typename Rhs::ConstColXpr,DenseShape,DenseShape,GemvProduct>
479
+ ::scaleAndAddTo(dst_vec, a_lhs, a_rhs.col(0), alpha);
480
+ }
481
+ else if (dst.rows() == 1)
482
+ {
483
+ // Fallback to GEMV if either the lhs or rhs is a runtime vector
484
+ typename Dest::RowXpr dst_vec(dst.row(0));
485
+ return internal::generic_product_impl<typename Lhs::ConstRowXpr,Rhs,DenseShape,DenseShape,GemvProduct>
486
+ ::scaleAndAddTo(dst_vec, a_lhs.row(0), a_rhs, alpha);
487
+ }
488
+
489
+ typename internal::add_const_on_value_type<ActualLhsType>::type lhs = LhsBlasTraits::extract(a_lhs);
490
+ typename internal::add_const_on_value_type<ActualRhsType>::type rhs = RhsBlasTraits::extract(a_rhs);
491
+
492
+ Scalar actualAlpha = combine_scalar_factors(alpha, a_lhs, a_rhs);
493
+
494
+ typedef internal::gemm_blocking_space<(Dest::Flags&RowMajorBit) ? RowMajor : ColMajor,LhsScalar,RhsScalar,
495
+ Dest::MaxRowsAtCompileTime,Dest::MaxColsAtCompileTime,MaxDepthAtCompileTime> BlockingType;
496
+
497
+ typedef internal::gemm_functor<
498
+ Scalar, Index,
499
+ internal::general_matrix_matrix_product<
500
+ Index,
501
+ LhsScalar, (ActualLhsTypeCleaned::Flags&RowMajorBit) ? RowMajor : ColMajor, bool(LhsBlasTraits::NeedToConjugate),
502
+ RhsScalar, (ActualRhsTypeCleaned::Flags&RowMajorBit) ? RowMajor : ColMajor, bool(RhsBlasTraits::NeedToConjugate),
503
+ (Dest::Flags&RowMajorBit) ? RowMajor : ColMajor,
504
+ Dest::InnerStrideAtCompileTime>,
505
+ ActualLhsTypeCleaned, ActualRhsTypeCleaned, Dest, BlockingType> GemmFunctor;
506
+
507
+ BlockingType blocking(dst.rows(), dst.cols(), lhs.cols(), 1, true);
508
+ internal::parallelize_gemm<(Dest::MaxRowsAtCompileTime>32 || Dest::MaxRowsAtCompileTime==Dynamic)>
509
+ (GemmFunctor(lhs, rhs, dst, actualAlpha, blocking), a_lhs.rows(), a_rhs.cols(), a_lhs.cols(), Dest::Flags&RowMajorBit);
510
+ }
511
+ };
512
+
513
+ } // end namespace internal
514
+
515
+ } // end namespace Eigen
516
+
517
+ #endif // EIGEN_GENERAL_MATRIX_MATRIX_H