umappp 0.1.2

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Files changed (395) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +25 -0
  3. data/README.md +110 -0
  4. data/ext/umappp/extconf.rb +25 -0
  5. data/ext/umappp/numo.hpp +867 -0
  6. data/ext/umappp/umappp.cpp +225 -0
  7. data/lib/umappp/version.rb +5 -0
  8. data/lib/umappp.rb +41 -0
  9. data/vendor/Eigen/Cholesky +45 -0
  10. data/vendor/Eigen/CholmodSupport +48 -0
  11. data/vendor/Eigen/Core +384 -0
  12. data/vendor/Eigen/Dense +7 -0
  13. data/vendor/Eigen/Eigen +2 -0
  14. data/vendor/Eigen/Eigenvalues +60 -0
  15. data/vendor/Eigen/Geometry +59 -0
  16. data/vendor/Eigen/Householder +29 -0
  17. data/vendor/Eigen/IterativeLinearSolvers +48 -0
  18. data/vendor/Eigen/Jacobi +32 -0
  19. data/vendor/Eigen/KLUSupport +41 -0
  20. data/vendor/Eigen/LU +47 -0
  21. data/vendor/Eigen/MetisSupport +35 -0
  22. data/vendor/Eigen/OrderingMethods +70 -0
  23. data/vendor/Eigen/PaStiXSupport +49 -0
  24. data/vendor/Eigen/PardisoSupport +35 -0
  25. data/vendor/Eigen/QR +50 -0
  26. data/vendor/Eigen/QtAlignedMalloc +39 -0
  27. data/vendor/Eigen/SPQRSupport +34 -0
  28. data/vendor/Eigen/SVD +50 -0
  29. data/vendor/Eigen/Sparse +34 -0
  30. data/vendor/Eigen/SparseCholesky +37 -0
  31. data/vendor/Eigen/SparseCore +69 -0
  32. data/vendor/Eigen/SparseLU +50 -0
  33. data/vendor/Eigen/SparseQR +36 -0
  34. data/vendor/Eigen/StdDeque +27 -0
  35. data/vendor/Eigen/StdList +26 -0
  36. data/vendor/Eigen/StdVector +27 -0
  37. data/vendor/Eigen/SuperLUSupport +64 -0
  38. data/vendor/Eigen/UmfPackSupport +40 -0
  39. data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
  40. data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
  41. data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  42. data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
  43. data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
  44. data/vendor/Eigen/src/Core/Array.h +417 -0
  45. data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
  46. data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
  47. data/vendor/Eigen/src/Core/Assign.h +90 -0
  48. data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
  49. data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
  50. data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
  51. data/vendor/Eigen/src/Core/Block.h +448 -0
  52. data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
  53. data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
  54. data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
  55. data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
  56. data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
  57. data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
  58. data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
  59. data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  60. data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  61. data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
  62. data/vendor/Eigen/src/Core/DenseBase.h +701 -0
  63. data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
  64. data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
  65. data/vendor/Eigen/src/Core/Diagonal.h +258 -0
  66. data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
  67. data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
  68. data/vendor/Eigen/src/Core/Dot.h +318 -0
  69. data/vendor/Eigen/src/Core/EigenBase.h +160 -0
  70. data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
  71. data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
  72. data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
  73. data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
  74. data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
  75. data/vendor/Eigen/src/Core/IO.h +258 -0
  76. data/vendor/Eigen/src/Core/IndexedView.h +237 -0
  77. data/vendor/Eigen/src/Core/Inverse.h +117 -0
  78. data/vendor/Eigen/src/Core/Map.h +171 -0
  79. data/vendor/Eigen/src/Core/MapBase.h +310 -0
  80. data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
  81. data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
  82. data/vendor/Eigen/src/Core/Matrix.h +565 -0
  83. data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
  84. data/vendor/Eigen/src/Core/NestByValue.h +85 -0
  85. data/vendor/Eigen/src/Core/NoAlias.h +109 -0
  86. data/vendor/Eigen/src/Core/NumTraits.h +335 -0
  87. data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  88. data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
  89. data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
  90. data/vendor/Eigen/src/Core/Product.h +191 -0
  91. data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
  92. data/vendor/Eigen/src/Core/Random.h +218 -0
  93. data/vendor/Eigen/src/Core/Redux.h +515 -0
  94. data/vendor/Eigen/src/Core/Ref.h +381 -0
  95. data/vendor/Eigen/src/Core/Replicate.h +142 -0
  96. data/vendor/Eigen/src/Core/Reshaped.h +454 -0
  97. data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
  98. data/vendor/Eigen/src/Core/Reverse.h +217 -0
  99. data/vendor/Eigen/src/Core/Select.h +164 -0
  100. data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
  101. data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  102. data/vendor/Eigen/src/Core/Solve.h +188 -0
  103. data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
  104. data/vendor/Eigen/src/Core/SolverBase.h +168 -0
  105. data/vendor/Eigen/src/Core/StableNorm.h +251 -0
  106. data/vendor/Eigen/src/Core/StlIterators.h +463 -0
  107. data/vendor/Eigen/src/Core/Stride.h +116 -0
  108. data/vendor/Eigen/src/Core/Swap.h +68 -0
  109. data/vendor/Eigen/src/Core/Transpose.h +464 -0
  110. data/vendor/Eigen/src/Core/Transpositions.h +386 -0
  111. data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
  112. data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
  113. data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
  114. data/vendor/Eigen/src/Core/Visitor.h +381 -0
  115. data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
  116. data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
  117. data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
  118. data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
  119. data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  120. data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
  121. data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
  122. data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  123. data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
  124. data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
  125. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  126. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  127. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  128. data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
  129. data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
  130. data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  131. data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
  132. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  133. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  134. data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
  135. data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
  136. data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  137. data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
  138. data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  139. data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  140. data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  141. data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  142. data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  143. data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  144. data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
  145. data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  146. data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
  147. data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
  148. data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  149. data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
  150. data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
  151. data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
  152. data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
  153. data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  154. data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  155. data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  156. data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  157. data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  158. data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  159. data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  160. data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  161. data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
  162. data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
  163. data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
  164. data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
  165. data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
  166. data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
  167. data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
  168. data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  169. data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
  170. data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
  171. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
  172. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
  173. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  174. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
  175. data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
  176. data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  177. data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
  178. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
  179. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
  180. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
  181. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  182. data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  183. data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
  184. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
  185. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
  186. data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  187. data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  188. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
  189. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
  190. data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
  191. data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
  192. data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  193. data/vendor/Eigen/src/Core/util/Constants.h +563 -0
  194. data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
  195. data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
  196. data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  197. data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
  198. data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
  199. data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
  200. data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
  201. data/vendor/Eigen/src/Core/util/Meta.h +812 -0
  202. data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
  203. data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
  204. data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  205. data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
  206. data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  207. data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
  208. data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  209. data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
  210. data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  211. data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  212. data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  213. data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  214. data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  215. data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  216. data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
  217. data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
  218. data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  219. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
  220. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  221. data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
  222. data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
  223. data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
  224. data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
  225. data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
  226. data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
  227. data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
  228. data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
  229. data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
  230. data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
  231. data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
  232. data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
  233. data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
  234. data/vendor/Eigen/src/Geometry/Translation.h +202 -0
  235. data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
  236. data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  237. data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
  238. data/vendor/Eigen/src/Householder/Householder.h +176 -0
  239. data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
  240. data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  241. data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
  242. data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
  243. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
  244. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
  245. data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
  246. data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
  247. data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
  248. data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
  249. data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  250. data/vendor/Eigen/src/LU/Determinant.h +117 -0
  251. data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
  252. data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
  253. data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
  254. data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  255. data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
  256. data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  257. data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
  258. data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
  259. data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
  260. data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  261. data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
  262. data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
  263. data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  264. data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
  265. data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
  266. data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
  267. data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  268. data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
  269. data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
  270. data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
  271. data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  272. data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
  273. data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  274. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
  275. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
  276. data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
  277. data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
  278. data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  279. data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  280. data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
  281. data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
  282. data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  283. data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
  284. data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
  285. data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
  286. data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
  287. data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  288. data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
  289. data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  290. data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
  291. data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
  292. data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
  293. data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  294. data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
  295. data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
  296. data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
  297. data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
  298. data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  299. data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  300. data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  301. data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  302. data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
  303. data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
  304. data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
  305. data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  306. data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
  307. data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  308. data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  309. data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  310. data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
  311. data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  312. data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  313. data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  314. data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  315. data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  316. data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  317. data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  318. data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  319. data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  320. data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  321. data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  322. data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  323. data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
  324. data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
  325. data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
  326. data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
  327. data/vendor/Eigen/src/StlSupport/details.h +84 -0
  328. data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
  329. data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
  330. data/vendor/Eigen/src/misc/Image.h +82 -0
  331. data/vendor/Eigen/src/misc/Kernel.h +79 -0
  332. data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
  333. data/vendor/Eigen/src/misc/blas.h +440 -0
  334. data/vendor/Eigen/src/misc/lapack.h +152 -0
  335. data/vendor/Eigen/src/misc/lapacke.h +16292 -0
  336. data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
  337. data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
  338. data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
  339. data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
  340. data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  341. data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
  342. data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  343. data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  344. data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
  345. data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
  346. data/vendor/aarand/aarand.hpp +114 -0
  347. data/vendor/annoy/annoylib.h +1495 -0
  348. data/vendor/annoy/kissrandom.h +120 -0
  349. data/vendor/annoy/mman.h +242 -0
  350. data/vendor/hnswlib/bruteforce.h +152 -0
  351. data/vendor/hnswlib/hnswalg.h +1192 -0
  352. data/vendor/hnswlib/hnswlib.h +108 -0
  353. data/vendor/hnswlib/space_ip.h +282 -0
  354. data/vendor/hnswlib/space_l2.h +281 -0
  355. data/vendor/hnswlib/visited_list_pool.h +79 -0
  356. data/vendor/irlba/irlba.hpp +575 -0
  357. data/vendor/irlba/lanczos.hpp +212 -0
  358. data/vendor/irlba/parallel.hpp +474 -0
  359. data/vendor/irlba/utils.hpp +224 -0
  360. data/vendor/irlba/wrappers.hpp +228 -0
  361. data/vendor/kmeans/Base.hpp +75 -0
  362. data/vendor/kmeans/Details.hpp +79 -0
  363. data/vendor/kmeans/HartiganWong.hpp +492 -0
  364. data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
  365. data/vendor/kmeans/InitializeNone.hpp +44 -0
  366. data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
  367. data/vendor/kmeans/InitializeRandom.hpp +91 -0
  368. data/vendor/kmeans/Kmeans.hpp +161 -0
  369. data/vendor/kmeans/Lloyd.hpp +134 -0
  370. data/vendor/kmeans/MiniBatch.hpp +269 -0
  371. data/vendor/kmeans/QuickSearch.hpp +179 -0
  372. data/vendor/kmeans/compute_centroids.hpp +32 -0
  373. data/vendor/kmeans/compute_wcss.hpp +27 -0
  374. data/vendor/kmeans/is_edge_case.hpp +42 -0
  375. data/vendor/kmeans/random.hpp +55 -0
  376. data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
  377. data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
  378. data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
  379. data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
  380. data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
  381. data/vendor/knncolle/knncolle.hpp +34 -0
  382. data/vendor/knncolle/utils/Base.hpp +100 -0
  383. data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
  384. data/vendor/knncolle/utils/distances.hpp +98 -0
  385. data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
  386. data/vendor/powerit/PowerIterations.hpp +157 -0
  387. data/vendor/umappp/NeighborList.hpp +37 -0
  388. data/vendor/umappp/Umap.hpp +662 -0
  389. data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
  390. data/vendor/umappp/find_ab.hpp +157 -0
  391. data/vendor/umappp/neighbor_similarities.hpp +136 -0
  392. data/vendor/umappp/optimize_layout.hpp +285 -0
  393. data/vendor/umappp/spectral_init.hpp +181 -0
  394. data/vendor/umappp/umappp.hpp +13 -0
  395. metadata +465 -0
@@ -0,0 +1,558 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ // Copyright (C) 2010,2012 Jitse Niesen <jitse@maths.leeds.ac.uk>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_REAL_SCHUR_H
12
+ #define EIGEN_REAL_SCHUR_H
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+
14
+ #include "./HessenbergDecomposition.h"
15
+
16
+ namespace Eigen {
17
+
18
+ /** \eigenvalues_module \ingroup Eigenvalues_Module
19
+ *
20
+ *
21
+ * \class RealSchur
22
+ *
23
+ * \brief Performs a real Schur decomposition of a square matrix
24
+ *
25
+ * \tparam _MatrixType the type of the matrix of which we are computing the
26
+ * real Schur decomposition; this is expected to be an instantiation of the
27
+ * Matrix class template.
28
+ *
29
+ * Given a real square matrix A, this class computes the real Schur
30
+ * decomposition: \f$ A = U T U^T \f$ where U is a real orthogonal matrix and
31
+ * T is a real quasi-triangular matrix. An orthogonal matrix is a matrix whose
32
+ * inverse is equal to its transpose, \f$ U^{-1} = U^T \f$. A quasi-triangular
33
+ * matrix is a block-triangular matrix whose diagonal consists of 1-by-1
34
+ * blocks and 2-by-2 blocks with complex eigenvalues. The eigenvalues of the
35
+ * blocks on the diagonal of T are the same as the eigenvalues of the matrix
36
+ * A, and thus the real Schur decomposition is used in EigenSolver to compute
37
+ * the eigendecomposition of a matrix.
38
+ *
39
+ * Call the function compute() to compute the real Schur decomposition of a
40
+ * given matrix. Alternatively, you can use the RealSchur(const MatrixType&, bool)
41
+ * constructor which computes the real Schur decomposition at construction
42
+ * time. Once the decomposition is computed, you can use the matrixU() and
43
+ * matrixT() functions to retrieve the matrices U and T in the decomposition.
44
+ *
45
+ * The documentation of RealSchur(const MatrixType&, bool) contains an example
46
+ * of the typical use of this class.
47
+ *
48
+ * \note The implementation is adapted from
49
+ * <a href="http://math.nist.gov/javanumerics/jama/">JAMA</a> (public domain).
50
+ * Their code is based on EISPACK.
51
+ *
52
+ * \sa class ComplexSchur, class EigenSolver, class ComplexEigenSolver
53
+ */
54
+ template<typename _MatrixType> class RealSchur
55
+ {
56
+ public:
57
+ typedef _MatrixType MatrixType;
58
+ enum {
59
+ RowsAtCompileTime = MatrixType::RowsAtCompileTime,
60
+ ColsAtCompileTime = MatrixType::ColsAtCompileTime,
61
+ Options = MatrixType::Options,
62
+ MaxRowsAtCompileTime = MatrixType::MaxRowsAtCompileTime,
63
+ MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime
64
+ };
65
+ typedef typename MatrixType::Scalar Scalar;
66
+ typedef std::complex<typename NumTraits<Scalar>::Real> ComplexScalar;
67
+ typedef Eigen::Index Index; ///< \deprecated since Eigen 3.3
68
+
69
+ typedef Matrix<ComplexScalar, ColsAtCompileTime, 1, Options & ~RowMajor, MaxColsAtCompileTime, 1> EigenvalueType;
70
+ typedef Matrix<Scalar, ColsAtCompileTime, 1, Options & ~RowMajor, MaxColsAtCompileTime, 1> ColumnVectorType;
71
+
72
+ /** \brief Default constructor.
73
+ *
74
+ * \param [in] size Positive integer, size of the matrix whose Schur decomposition will be computed.
75
+ *
76
+ * The default constructor is useful in cases in which the user intends to
77
+ * perform decompositions via compute(). The \p size parameter is only
78
+ * used as a hint. It is not an error to give a wrong \p size, but it may
79
+ * impair performance.
80
+ *
81
+ * \sa compute() for an example.
82
+ */
83
+ explicit RealSchur(Index size = RowsAtCompileTime==Dynamic ? 1 : RowsAtCompileTime)
84
+ : m_matT(size, size),
85
+ m_matU(size, size),
86
+ m_workspaceVector(size),
87
+ m_hess(size),
88
+ m_isInitialized(false),
89
+ m_matUisUptodate(false),
90
+ m_maxIters(-1)
91
+ { }
92
+
93
+ /** \brief Constructor; computes real Schur decomposition of given matrix.
94
+ *
95
+ * \param[in] matrix Square matrix whose Schur decomposition is to be computed.
96
+ * \param[in] computeU If true, both T and U are computed; if false, only T is computed.
97
+ *
98
+ * This constructor calls compute() to compute the Schur decomposition.
99
+ *
100
+ * Example: \include RealSchur_RealSchur_MatrixType.cpp
101
+ * Output: \verbinclude RealSchur_RealSchur_MatrixType.out
102
+ */
103
+ template<typename InputType>
104
+ explicit RealSchur(const EigenBase<InputType>& matrix, bool computeU = true)
105
+ : m_matT(matrix.rows(),matrix.cols()),
106
+ m_matU(matrix.rows(),matrix.cols()),
107
+ m_workspaceVector(matrix.rows()),
108
+ m_hess(matrix.rows()),
109
+ m_isInitialized(false),
110
+ m_matUisUptodate(false),
111
+ m_maxIters(-1)
112
+ {
113
+ compute(matrix.derived(), computeU);
114
+ }
115
+
116
+ /** \brief Returns the orthogonal matrix in the Schur decomposition.
117
+ *
118
+ * \returns A const reference to the matrix U.
119
+ *
120
+ * \pre Either the constructor RealSchur(const MatrixType&, bool) or the
121
+ * member function compute(const MatrixType&, bool) has been called before
122
+ * to compute the Schur decomposition of a matrix, and \p computeU was set
123
+ * to true (the default value).
124
+ *
125
+ * \sa RealSchur(const MatrixType&, bool) for an example
126
+ */
127
+ const MatrixType& matrixU() const
128
+ {
129
+ eigen_assert(m_isInitialized && "RealSchur is not initialized.");
130
+ eigen_assert(m_matUisUptodate && "The matrix U has not been computed during the RealSchur decomposition.");
131
+ return m_matU;
132
+ }
133
+
134
+ /** \brief Returns the quasi-triangular matrix in the Schur decomposition.
135
+ *
136
+ * \returns A const reference to the matrix T.
137
+ *
138
+ * \pre Either the constructor RealSchur(const MatrixType&, bool) or the
139
+ * member function compute(const MatrixType&, bool) has been called before
140
+ * to compute the Schur decomposition of a matrix.
141
+ *
142
+ * \sa RealSchur(const MatrixType&, bool) for an example
143
+ */
144
+ const MatrixType& matrixT() const
145
+ {
146
+ eigen_assert(m_isInitialized && "RealSchur is not initialized.");
147
+ return m_matT;
148
+ }
149
+
150
+ /** \brief Computes Schur decomposition of given matrix.
151
+ *
152
+ * \param[in] matrix Square matrix whose Schur decomposition is to be computed.
153
+ * \param[in] computeU If true, both T and U are computed; if false, only T is computed.
154
+ * \returns Reference to \c *this
155
+ *
156
+ * The Schur decomposition is computed by first reducing the matrix to
157
+ * Hessenberg form using the class HessenbergDecomposition. The Hessenberg
158
+ * matrix is then reduced to triangular form by performing Francis QR
159
+ * iterations with implicit double shift. The cost of computing the Schur
160
+ * decomposition depends on the number of iterations; as a rough guide, it
161
+ * may be taken to be \f$25n^3\f$ flops if \a computeU is true and
162
+ * \f$10n^3\f$ flops if \a computeU is false.
163
+ *
164
+ * Example: \include RealSchur_compute.cpp
165
+ * Output: \verbinclude RealSchur_compute.out
166
+ *
167
+ * \sa compute(const MatrixType&, bool, Index)
168
+ */
169
+ template<typename InputType>
170
+ RealSchur& compute(const EigenBase<InputType>& matrix, bool computeU = true);
171
+
172
+ /** \brief Computes Schur decomposition of a Hessenberg matrix H = Z T Z^T
173
+ * \param[in] matrixH Matrix in Hessenberg form H
174
+ * \param[in] matrixQ orthogonal matrix Q that transform a matrix A to H : A = Q H Q^T
175
+ * \param computeU Computes the matriX U of the Schur vectors
176
+ * \return Reference to \c *this
177
+ *
178
+ * This routine assumes that the matrix is already reduced in Hessenberg form matrixH
179
+ * using either the class HessenbergDecomposition or another mean.
180
+ * It computes the upper quasi-triangular matrix T of the Schur decomposition of H
181
+ * When computeU is true, this routine computes the matrix U such that
182
+ * A = U T U^T = (QZ) T (QZ)^T = Q H Q^T where A is the initial matrix
183
+ *
184
+ * NOTE Q is referenced if computeU is true; so, if the initial orthogonal matrix
185
+ * is not available, the user should give an identity matrix (Q.setIdentity())
186
+ *
187
+ * \sa compute(const MatrixType&, bool)
188
+ */
189
+ template<typename HessMatrixType, typename OrthMatrixType>
190
+ RealSchur& computeFromHessenberg(const HessMatrixType& matrixH, const OrthMatrixType& matrixQ, bool computeU);
191
+ /** \brief Reports whether previous computation was successful.
192
+ *
193
+ * \returns \c Success if computation was successful, \c NoConvergence otherwise.
194
+ */
195
+ ComputationInfo info() const
196
+ {
197
+ eigen_assert(m_isInitialized && "RealSchur is not initialized.");
198
+ return m_info;
199
+ }
200
+
201
+ /** \brief Sets the maximum number of iterations allowed.
202
+ *
203
+ * If not specified by the user, the maximum number of iterations is m_maxIterationsPerRow times the size
204
+ * of the matrix.
205
+ */
206
+ RealSchur& setMaxIterations(Index maxIters)
207
+ {
208
+ m_maxIters = maxIters;
209
+ return *this;
210
+ }
211
+
212
+ /** \brief Returns the maximum number of iterations. */
213
+ Index getMaxIterations()
214
+ {
215
+ return m_maxIters;
216
+ }
217
+
218
+ /** \brief Maximum number of iterations per row.
219
+ *
220
+ * If not otherwise specified, the maximum number of iterations is this number times the size of the
221
+ * matrix. It is currently set to 40.
222
+ */
223
+ static const int m_maxIterationsPerRow = 40;
224
+
225
+ private:
226
+
227
+ MatrixType m_matT;
228
+ MatrixType m_matU;
229
+ ColumnVectorType m_workspaceVector;
230
+ HessenbergDecomposition<MatrixType> m_hess;
231
+ ComputationInfo m_info;
232
+ bool m_isInitialized;
233
+ bool m_matUisUptodate;
234
+ Index m_maxIters;
235
+
236
+ typedef Matrix<Scalar,3,1> Vector3s;
237
+
238
+ Scalar computeNormOfT();
239
+ Index findSmallSubdiagEntry(Index iu, const Scalar& considerAsZero);
240
+ void splitOffTwoRows(Index iu, bool computeU, const Scalar& exshift);
241
+ void computeShift(Index iu, Index iter, Scalar& exshift, Vector3s& shiftInfo);
242
+ void initFrancisQRStep(Index il, Index iu, const Vector3s& shiftInfo, Index& im, Vector3s& firstHouseholderVector);
243
+ void performFrancisQRStep(Index il, Index im, Index iu, bool computeU, const Vector3s& firstHouseholderVector, Scalar* workspace);
244
+ };
245
+
246
+
247
+ template<typename MatrixType>
248
+ template<typename InputType>
249
+ RealSchur<MatrixType>& RealSchur<MatrixType>::compute(const EigenBase<InputType>& matrix, bool computeU)
250
+ {
251
+ const Scalar considerAsZero = (std::numeric_limits<Scalar>::min)();
252
+
253
+ eigen_assert(matrix.cols() == matrix.rows());
254
+ Index maxIters = m_maxIters;
255
+ if (maxIters == -1)
256
+ maxIters = m_maxIterationsPerRow * matrix.rows();
257
+
258
+ Scalar scale = matrix.derived().cwiseAbs().maxCoeff();
259
+ if(scale<considerAsZero)
260
+ {
261
+ m_matT.setZero(matrix.rows(),matrix.cols());
262
+ if(computeU)
263
+ m_matU.setIdentity(matrix.rows(),matrix.cols());
264
+ m_info = Success;
265
+ m_isInitialized = true;
266
+ m_matUisUptodate = computeU;
267
+ return *this;
268
+ }
269
+
270
+ // Step 1. Reduce to Hessenberg form
271
+ m_hess.compute(matrix.derived()/scale);
272
+
273
+ // Step 2. Reduce to real Schur form
274
+ // Note: we copy m_hess.matrixQ() into m_matU here and not in computeFromHessenberg
275
+ // to be able to pass our working-space buffer for the Householder to Dense evaluation.
276
+ m_workspaceVector.resize(matrix.cols());
277
+ if(computeU)
278
+ m_hess.matrixQ().evalTo(m_matU, m_workspaceVector);
279
+ computeFromHessenberg(m_hess.matrixH(), m_matU, computeU);
280
+
281
+ m_matT *= scale;
282
+
283
+ return *this;
284
+ }
285
+ template<typename MatrixType>
286
+ template<typename HessMatrixType, typename OrthMatrixType>
287
+ RealSchur<MatrixType>& RealSchur<MatrixType>::computeFromHessenberg(const HessMatrixType& matrixH, const OrthMatrixType& matrixQ, bool computeU)
288
+ {
289
+ using std::abs;
290
+
291
+ m_matT = matrixH;
292
+ m_workspaceVector.resize(m_matT.cols());
293
+ if(computeU && !internal::is_same_dense(m_matU,matrixQ))
294
+ m_matU = matrixQ;
295
+
296
+ Index maxIters = m_maxIters;
297
+ if (maxIters == -1)
298
+ maxIters = m_maxIterationsPerRow * matrixH.rows();
299
+ Scalar* workspace = &m_workspaceVector.coeffRef(0);
300
+
301
+ // The matrix m_matT is divided in three parts.
302
+ // Rows 0,...,il-1 are decoupled from the rest because m_matT(il,il-1) is zero.
303
+ // Rows il,...,iu is the part we are working on (the active window).
304
+ // Rows iu+1,...,end are already brought in triangular form.
305
+ Index iu = m_matT.cols() - 1;
306
+ Index iter = 0; // iteration count for current eigenvalue
307
+ Index totalIter = 0; // iteration count for whole matrix
308
+ Scalar exshift(0); // sum of exceptional shifts
309
+ Scalar norm = computeNormOfT();
310
+ // sub-diagonal entries smaller than considerAsZero will be treated as zero.
311
+ // We use eps^2 to enable more precision in small eigenvalues.
312
+ Scalar considerAsZero = numext::maxi<Scalar>( norm * numext::abs2(NumTraits<Scalar>::epsilon()),
313
+ (std::numeric_limits<Scalar>::min)() );
314
+
315
+ if(norm!=Scalar(0))
316
+ {
317
+ while (iu >= 0)
318
+ {
319
+ Index il = findSmallSubdiagEntry(iu,considerAsZero);
320
+
321
+ // Check for convergence
322
+ if (il == iu) // One root found
323
+ {
324
+ m_matT.coeffRef(iu,iu) = m_matT.coeff(iu,iu) + exshift;
325
+ if (iu > 0)
326
+ m_matT.coeffRef(iu, iu-1) = Scalar(0);
327
+ iu--;
328
+ iter = 0;
329
+ }
330
+ else if (il == iu-1) // Two roots found
331
+ {
332
+ splitOffTwoRows(iu, computeU, exshift);
333
+ iu -= 2;
334
+ iter = 0;
335
+ }
336
+ else // No convergence yet
337
+ {
338
+ // The firstHouseholderVector vector has to be initialized to something to get rid of a silly GCC warning (-O1 -Wall -DNDEBUG )
339
+ Vector3s firstHouseholderVector = Vector3s::Zero(), shiftInfo;
340
+ computeShift(iu, iter, exshift, shiftInfo);
341
+ iter = iter + 1;
342
+ totalIter = totalIter + 1;
343
+ if (totalIter > maxIters) break;
344
+ Index im;
345
+ initFrancisQRStep(il, iu, shiftInfo, im, firstHouseholderVector);
346
+ performFrancisQRStep(il, im, iu, computeU, firstHouseholderVector, workspace);
347
+ }
348
+ }
349
+ }
350
+ if(totalIter <= maxIters)
351
+ m_info = Success;
352
+ else
353
+ m_info = NoConvergence;
354
+
355
+ m_isInitialized = true;
356
+ m_matUisUptodate = computeU;
357
+ return *this;
358
+ }
359
+
360
+ /** \internal Computes and returns vector L1 norm of T */
361
+ template<typename MatrixType>
362
+ inline typename MatrixType::Scalar RealSchur<MatrixType>::computeNormOfT()
363
+ {
364
+ const Index size = m_matT.cols();
365
+ // FIXME to be efficient the following would requires a triangular reduxion code
366
+ // Scalar norm = m_matT.upper().cwiseAbs().sum()
367
+ // + m_matT.bottomLeftCorner(size-1,size-1).diagonal().cwiseAbs().sum();
368
+ Scalar norm(0);
369
+ for (Index j = 0; j < size; ++j)
370
+ norm += m_matT.col(j).segment(0, (std::min)(size,j+2)).cwiseAbs().sum();
371
+ return norm;
372
+ }
373
+
374
+ /** \internal Look for single small sub-diagonal element and returns its index */
375
+ template<typename MatrixType>
376
+ inline Index RealSchur<MatrixType>::findSmallSubdiagEntry(Index iu, const Scalar& considerAsZero)
377
+ {
378
+ using std::abs;
379
+ Index res = iu;
380
+ while (res > 0)
381
+ {
382
+ Scalar s = abs(m_matT.coeff(res-1,res-1)) + abs(m_matT.coeff(res,res));
383
+
384
+ s = numext::maxi<Scalar>(s * NumTraits<Scalar>::epsilon(), considerAsZero);
385
+
386
+ if (abs(m_matT.coeff(res,res-1)) <= s)
387
+ break;
388
+ res--;
389
+ }
390
+ return res;
391
+ }
392
+
393
+ /** \internal Update T given that rows iu-1 and iu decouple from the rest. */
394
+ template<typename MatrixType>
395
+ inline void RealSchur<MatrixType>::splitOffTwoRows(Index iu, bool computeU, const Scalar& exshift)
396
+ {
397
+ using std::sqrt;
398
+ using std::abs;
399
+ const Index size = m_matT.cols();
400
+
401
+ // The eigenvalues of the 2x2 matrix [a b; c d] are
402
+ // trace +/- sqrt(discr/4) where discr = tr^2 - 4*det, tr = a + d, det = ad - bc
403
+ Scalar p = Scalar(0.5) * (m_matT.coeff(iu-1,iu-1) - m_matT.coeff(iu,iu));
404
+ Scalar q = p * p + m_matT.coeff(iu,iu-1) * m_matT.coeff(iu-1,iu); // q = tr^2 / 4 - det = discr/4
405
+ m_matT.coeffRef(iu,iu) += exshift;
406
+ m_matT.coeffRef(iu-1,iu-1) += exshift;
407
+
408
+ if (q >= Scalar(0)) // Two real eigenvalues
409
+ {
410
+ Scalar z = sqrt(abs(q));
411
+ JacobiRotation<Scalar> rot;
412
+ if (p >= Scalar(0))
413
+ rot.makeGivens(p + z, m_matT.coeff(iu, iu-1));
414
+ else
415
+ rot.makeGivens(p - z, m_matT.coeff(iu, iu-1));
416
+
417
+ m_matT.rightCols(size-iu+1).applyOnTheLeft(iu-1, iu, rot.adjoint());
418
+ m_matT.topRows(iu+1).applyOnTheRight(iu-1, iu, rot);
419
+ m_matT.coeffRef(iu, iu-1) = Scalar(0);
420
+ if (computeU)
421
+ m_matU.applyOnTheRight(iu-1, iu, rot);
422
+ }
423
+
424
+ if (iu > 1)
425
+ m_matT.coeffRef(iu-1, iu-2) = Scalar(0);
426
+ }
427
+
428
+ /** \internal Form shift in shiftInfo, and update exshift if an exceptional shift is performed. */
429
+ template<typename MatrixType>
430
+ inline void RealSchur<MatrixType>::computeShift(Index iu, Index iter, Scalar& exshift, Vector3s& shiftInfo)
431
+ {
432
+ using std::sqrt;
433
+ using std::abs;
434
+ shiftInfo.coeffRef(0) = m_matT.coeff(iu,iu);
435
+ shiftInfo.coeffRef(1) = m_matT.coeff(iu-1,iu-1);
436
+ shiftInfo.coeffRef(2) = m_matT.coeff(iu,iu-1) * m_matT.coeff(iu-1,iu);
437
+
438
+ // Wilkinson's original ad hoc shift
439
+ if (iter == 10)
440
+ {
441
+ exshift += shiftInfo.coeff(0);
442
+ for (Index i = 0; i <= iu; ++i)
443
+ m_matT.coeffRef(i,i) -= shiftInfo.coeff(0);
444
+ Scalar s = abs(m_matT.coeff(iu,iu-1)) + abs(m_matT.coeff(iu-1,iu-2));
445
+ shiftInfo.coeffRef(0) = Scalar(0.75) * s;
446
+ shiftInfo.coeffRef(1) = Scalar(0.75) * s;
447
+ shiftInfo.coeffRef(2) = Scalar(-0.4375) * s * s;
448
+ }
449
+
450
+ // MATLAB's new ad hoc shift
451
+ if (iter == 30)
452
+ {
453
+ Scalar s = (shiftInfo.coeff(1) - shiftInfo.coeff(0)) / Scalar(2.0);
454
+ s = s * s + shiftInfo.coeff(2);
455
+ if (s > Scalar(0))
456
+ {
457
+ s = sqrt(s);
458
+ if (shiftInfo.coeff(1) < shiftInfo.coeff(0))
459
+ s = -s;
460
+ s = s + (shiftInfo.coeff(1) - shiftInfo.coeff(0)) / Scalar(2.0);
461
+ s = shiftInfo.coeff(0) - shiftInfo.coeff(2) / s;
462
+ exshift += s;
463
+ for (Index i = 0; i <= iu; ++i)
464
+ m_matT.coeffRef(i,i) -= s;
465
+ shiftInfo.setConstant(Scalar(0.964));
466
+ }
467
+ }
468
+ }
469
+
470
+ /** \internal Compute index im at which Francis QR step starts and the first Householder vector. */
471
+ template<typename MatrixType>
472
+ inline void RealSchur<MatrixType>::initFrancisQRStep(Index il, Index iu, const Vector3s& shiftInfo, Index& im, Vector3s& firstHouseholderVector)
473
+ {
474
+ using std::abs;
475
+ Vector3s& v = firstHouseholderVector; // alias to save typing
476
+
477
+ for (im = iu-2; im >= il; --im)
478
+ {
479
+ const Scalar Tmm = m_matT.coeff(im,im);
480
+ const Scalar r = shiftInfo.coeff(0) - Tmm;
481
+ const Scalar s = shiftInfo.coeff(1) - Tmm;
482
+ v.coeffRef(0) = (r * s - shiftInfo.coeff(2)) / m_matT.coeff(im+1,im) + m_matT.coeff(im,im+1);
483
+ v.coeffRef(1) = m_matT.coeff(im+1,im+1) - Tmm - r - s;
484
+ v.coeffRef(2) = m_matT.coeff(im+2,im+1);
485
+ if (im == il) {
486
+ break;
487
+ }
488
+ const Scalar lhs = m_matT.coeff(im,im-1) * (abs(v.coeff(1)) + abs(v.coeff(2)));
489
+ const Scalar rhs = v.coeff(0) * (abs(m_matT.coeff(im-1,im-1)) + abs(Tmm) + abs(m_matT.coeff(im+1,im+1)));
490
+ if (abs(lhs) < NumTraits<Scalar>::epsilon() * rhs)
491
+ break;
492
+ }
493
+ }
494
+
495
+ /** \internal Perform a Francis QR step involving rows il:iu and columns im:iu. */
496
+ template<typename MatrixType>
497
+ inline void RealSchur<MatrixType>::performFrancisQRStep(Index il, Index im, Index iu, bool computeU, const Vector3s& firstHouseholderVector, Scalar* workspace)
498
+ {
499
+ eigen_assert(im >= il);
500
+ eigen_assert(im <= iu-2);
501
+
502
+ const Index size = m_matT.cols();
503
+
504
+ for (Index k = im; k <= iu-2; ++k)
505
+ {
506
+ bool firstIteration = (k == im);
507
+
508
+ Vector3s v;
509
+ if (firstIteration)
510
+ v = firstHouseholderVector;
511
+ else
512
+ v = m_matT.template block<3,1>(k,k-1);
513
+
514
+ Scalar tau, beta;
515
+ Matrix<Scalar, 2, 1> ess;
516
+ v.makeHouseholder(ess, tau, beta);
517
+
518
+ if (beta != Scalar(0)) // if v is not zero
519
+ {
520
+ if (firstIteration && k > il)
521
+ m_matT.coeffRef(k,k-1) = -m_matT.coeff(k,k-1);
522
+ else if (!firstIteration)
523
+ m_matT.coeffRef(k,k-1) = beta;
524
+
525
+ // These Householder transformations form the O(n^3) part of the algorithm
526
+ m_matT.block(k, k, 3, size-k).applyHouseholderOnTheLeft(ess, tau, workspace);
527
+ m_matT.block(0, k, (std::min)(iu,k+3) + 1, 3).applyHouseholderOnTheRight(ess, tau, workspace);
528
+ if (computeU)
529
+ m_matU.block(0, k, size, 3).applyHouseholderOnTheRight(ess, tau, workspace);
530
+ }
531
+ }
532
+
533
+ Matrix<Scalar, 2, 1> v = m_matT.template block<2,1>(iu-1, iu-2);
534
+ Scalar tau, beta;
535
+ Matrix<Scalar, 1, 1> ess;
536
+ v.makeHouseholder(ess, tau, beta);
537
+
538
+ if (beta != Scalar(0)) // if v is not zero
539
+ {
540
+ m_matT.coeffRef(iu-1, iu-2) = beta;
541
+ m_matT.block(iu-1, iu-1, 2, size-iu+1).applyHouseholderOnTheLeft(ess, tau, workspace);
542
+ m_matT.block(0, iu-1, iu+1, 2).applyHouseholderOnTheRight(ess, tau, workspace);
543
+ if (computeU)
544
+ m_matU.block(0, iu-1, size, 2).applyHouseholderOnTheRight(ess, tau, workspace);
545
+ }
546
+
547
+ // clean up pollution due to round-off errors
548
+ for (Index i = im+2; i <= iu; ++i)
549
+ {
550
+ m_matT.coeffRef(i,i-2) = Scalar(0);
551
+ if (i > im+2)
552
+ m_matT.coeffRef(i,i-3) = Scalar(0);
553
+ }
554
+ }
555
+
556
+ } // end namespace Eigen
557
+
558
+ #endif // EIGEN_REAL_SCHUR_H
@@ -0,0 +1,77 @@
1
+ /*
2
+ Copyright (c) 2011, Intel Corporation. All rights reserved.
3
+
4
+ Redistribution and use in source and binary forms, with or without modification,
5
+ are permitted provided that the following conditions are met:
6
+
7
+ * Redistributions of source code must retain the above copyright notice, this
8
+ list of conditions and the following disclaimer.
9
+ * Redistributions in binary form must reproduce the above copyright notice,
10
+ this list of conditions and the following disclaimer in the documentation
11
+ and/or other materials provided with the distribution.
12
+ * Neither the name of Intel Corporation nor the names of its contributors may
13
+ be used to endorse or promote products derived from this software without
14
+ specific prior written permission.
15
+
16
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
17
+ ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
18
+ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
19
+ DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
20
+ ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
21
+ (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
22
+ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
23
+ ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
24
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
25
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
26
+
27
+ ********************************************************************************
28
+ * Content : Eigen bindings to LAPACKe
29
+ * Real Schur needed to real unsymmetrical eigenvalues/eigenvectors.
30
+ ********************************************************************************
31
+ */
32
+
33
+ #ifndef EIGEN_REAL_SCHUR_LAPACKE_H
34
+ #define EIGEN_REAL_SCHUR_LAPACKE_H
35
+
36
+ namespace Eigen {
37
+
38
+ /** \internal Specialization for the data types supported by LAPACKe */
39
+
40
+ #define EIGEN_LAPACKE_SCHUR_REAL(EIGTYPE, LAPACKE_TYPE, LAPACKE_PREFIX, LAPACKE_PREFIX_U, EIGCOLROW, LAPACKE_COLROW) \
41
+ template<> template<typename InputType> inline \
42
+ RealSchur<Matrix<EIGTYPE, Dynamic, Dynamic, EIGCOLROW> >& \
43
+ RealSchur<Matrix<EIGTYPE, Dynamic, Dynamic, EIGCOLROW> >::compute(const EigenBase<InputType>& matrix, bool computeU) \
44
+ { \
45
+ eigen_assert(matrix.cols() == matrix.rows()); \
46
+ \
47
+ lapack_int n = internal::convert_index<lapack_int>(matrix.cols()), sdim, info; \
48
+ lapack_int matrix_order = LAPACKE_COLROW; \
49
+ char jobvs, sort='N'; \
50
+ LAPACK_##LAPACKE_PREFIX_U##_SELECT2 select = 0; \
51
+ jobvs = (computeU) ? 'V' : 'N'; \
52
+ m_matU.resize(n, n); \
53
+ lapack_int ldvs = internal::convert_index<lapack_int>(m_matU.outerStride()); \
54
+ m_matT = matrix; \
55
+ lapack_int lda = internal::convert_index<lapack_int>(m_matT.outerStride()); \
56
+ Matrix<EIGTYPE, Dynamic, Dynamic> wr, wi; \
57
+ wr.resize(n, 1); wi.resize(n, 1); \
58
+ info = LAPACKE_##LAPACKE_PREFIX##gees( matrix_order, jobvs, sort, select, n, (LAPACKE_TYPE*)m_matT.data(), lda, &sdim, (LAPACKE_TYPE*)wr.data(), (LAPACKE_TYPE*)wi.data(), (LAPACKE_TYPE*)m_matU.data(), ldvs ); \
59
+ if(info == 0) \
60
+ m_info = Success; \
61
+ else \
62
+ m_info = NoConvergence; \
63
+ \
64
+ m_isInitialized = true; \
65
+ m_matUisUptodate = computeU; \
66
+ return *this; \
67
+ \
68
+ }
69
+
70
+ EIGEN_LAPACKE_SCHUR_REAL(double, double, d, D, ColMajor, LAPACK_COL_MAJOR)
71
+ EIGEN_LAPACKE_SCHUR_REAL(float, float, s, S, ColMajor, LAPACK_COL_MAJOR)
72
+ EIGEN_LAPACKE_SCHUR_REAL(double, double, d, D, RowMajor, LAPACK_ROW_MAJOR)
73
+ EIGEN_LAPACKE_SCHUR_REAL(float, float, s, S, RowMajor, LAPACK_ROW_MAJOR)
74
+
75
+ } // end namespace Eigen
76
+
77
+ #endif // EIGEN_REAL_SCHUR_LAPACKE_H