umappp 0.1.2

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Files changed (395) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +25 -0
  3. data/README.md +110 -0
  4. data/ext/umappp/extconf.rb +25 -0
  5. data/ext/umappp/numo.hpp +867 -0
  6. data/ext/umappp/umappp.cpp +225 -0
  7. data/lib/umappp/version.rb +5 -0
  8. data/lib/umappp.rb +41 -0
  9. data/vendor/Eigen/Cholesky +45 -0
  10. data/vendor/Eigen/CholmodSupport +48 -0
  11. data/vendor/Eigen/Core +384 -0
  12. data/vendor/Eigen/Dense +7 -0
  13. data/vendor/Eigen/Eigen +2 -0
  14. data/vendor/Eigen/Eigenvalues +60 -0
  15. data/vendor/Eigen/Geometry +59 -0
  16. data/vendor/Eigen/Householder +29 -0
  17. data/vendor/Eigen/IterativeLinearSolvers +48 -0
  18. data/vendor/Eigen/Jacobi +32 -0
  19. data/vendor/Eigen/KLUSupport +41 -0
  20. data/vendor/Eigen/LU +47 -0
  21. data/vendor/Eigen/MetisSupport +35 -0
  22. data/vendor/Eigen/OrderingMethods +70 -0
  23. data/vendor/Eigen/PaStiXSupport +49 -0
  24. data/vendor/Eigen/PardisoSupport +35 -0
  25. data/vendor/Eigen/QR +50 -0
  26. data/vendor/Eigen/QtAlignedMalloc +39 -0
  27. data/vendor/Eigen/SPQRSupport +34 -0
  28. data/vendor/Eigen/SVD +50 -0
  29. data/vendor/Eigen/Sparse +34 -0
  30. data/vendor/Eigen/SparseCholesky +37 -0
  31. data/vendor/Eigen/SparseCore +69 -0
  32. data/vendor/Eigen/SparseLU +50 -0
  33. data/vendor/Eigen/SparseQR +36 -0
  34. data/vendor/Eigen/StdDeque +27 -0
  35. data/vendor/Eigen/StdList +26 -0
  36. data/vendor/Eigen/StdVector +27 -0
  37. data/vendor/Eigen/SuperLUSupport +64 -0
  38. data/vendor/Eigen/UmfPackSupport +40 -0
  39. data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
  40. data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
  41. data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  42. data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
  43. data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
  44. data/vendor/Eigen/src/Core/Array.h +417 -0
  45. data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
  46. data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
  47. data/vendor/Eigen/src/Core/Assign.h +90 -0
  48. data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
  49. data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
  50. data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
  51. data/vendor/Eigen/src/Core/Block.h +448 -0
  52. data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
  53. data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
  54. data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
  55. data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
  56. data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
  57. data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
  58. data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
  59. data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  60. data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  61. data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
  62. data/vendor/Eigen/src/Core/DenseBase.h +701 -0
  63. data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
  64. data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
  65. data/vendor/Eigen/src/Core/Diagonal.h +258 -0
  66. data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
  67. data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
  68. data/vendor/Eigen/src/Core/Dot.h +318 -0
  69. data/vendor/Eigen/src/Core/EigenBase.h +160 -0
  70. data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
  71. data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
  72. data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
  73. data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
  74. data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
  75. data/vendor/Eigen/src/Core/IO.h +258 -0
  76. data/vendor/Eigen/src/Core/IndexedView.h +237 -0
  77. data/vendor/Eigen/src/Core/Inverse.h +117 -0
  78. data/vendor/Eigen/src/Core/Map.h +171 -0
  79. data/vendor/Eigen/src/Core/MapBase.h +310 -0
  80. data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
  81. data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
  82. data/vendor/Eigen/src/Core/Matrix.h +565 -0
  83. data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
  84. data/vendor/Eigen/src/Core/NestByValue.h +85 -0
  85. data/vendor/Eigen/src/Core/NoAlias.h +109 -0
  86. data/vendor/Eigen/src/Core/NumTraits.h +335 -0
  87. data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  88. data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
  89. data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
  90. data/vendor/Eigen/src/Core/Product.h +191 -0
  91. data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
  92. data/vendor/Eigen/src/Core/Random.h +218 -0
  93. data/vendor/Eigen/src/Core/Redux.h +515 -0
  94. data/vendor/Eigen/src/Core/Ref.h +381 -0
  95. data/vendor/Eigen/src/Core/Replicate.h +142 -0
  96. data/vendor/Eigen/src/Core/Reshaped.h +454 -0
  97. data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
  98. data/vendor/Eigen/src/Core/Reverse.h +217 -0
  99. data/vendor/Eigen/src/Core/Select.h +164 -0
  100. data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
  101. data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  102. data/vendor/Eigen/src/Core/Solve.h +188 -0
  103. data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
  104. data/vendor/Eigen/src/Core/SolverBase.h +168 -0
  105. data/vendor/Eigen/src/Core/StableNorm.h +251 -0
  106. data/vendor/Eigen/src/Core/StlIterators.h +463 -0
  107. data/vendor/Eigen/src/Core/Stride.h +116 -0
  108. data/vendor/Eigen/src/Core/Swap.h +68 -0
  109. data/vendor/Eigen/src/Core/Transpose.h +464 -0
  110. data/vendor/Eigen/src/Core/Transpositions.h +386 -0
  111. data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
  112. data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
  113. data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
  114. data/vendor/Eigen/src/Core/Visitor.h +381 -0
  115. data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
  116. data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
  117. data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
  118. data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
  119. data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  120. data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
  121. data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
  122. data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  123. data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
  124. data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
  125. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  126. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  127. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  128. data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
  129. data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
  130. data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  131. data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
  132. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  133. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  134. data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
  135. data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
  136. data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  137. data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
  138. data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  139. data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  140. data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  141. data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  142. data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  143. data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  144. data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
  145. data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  146. data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
  147. data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
  148. data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  149. data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
  150. data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
  151. data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
  152. data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
  153. data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  154. data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  155. data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  156. data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  157. data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  158. data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  159. data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  160. data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  161. data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
  162. data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
  163. data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
  164. data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
  165. data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
  166. data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
  167. data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
  168. data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  169. data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
  170. data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
  171. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
  172. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
  173. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  174. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
  175. data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
  176. data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  177. data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
  178. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
  179. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
  180. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
  181. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  182. data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  183. data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
  184. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
  185. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
  186. data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  187. data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  188. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
  189. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
  190. data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
  191. data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
  192. data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  193. data/vendor/Eigen/src/Core/util/Constants.h +563 -0
  194. data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
  195. data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
  196. data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  197. data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
  198. data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
  199. data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
  200. data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
  201. data/vendor/Eigen/src/Core/util/Meta.h +812 -0
  202. data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
  203. data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
  204. data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  205. data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
  206. data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  207. data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
  208. data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  209. data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
  210. data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  211. data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  212. data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  213. data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  214. data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  215. data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  216. data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
  217. data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
  218. data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  219. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
  220. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  221. data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
  222. data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
  223. data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
  224. data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
  225. data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
  226. data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
  227. data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
  228. data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
  229. data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
  230. data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
  231. data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
  232. data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
  233. data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
  234. data/vendor/Eigen/src/Geometry/Translation.h +202 -0
  235. data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
  236. data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  237. data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
  238. data/vendor/Eigen/src/Householder/Householder.h +176 -0
  239. data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
  240. data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  241. data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
  242. data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
  243. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
  244. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
  245. data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
  246. data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
  247. data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
  248. data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
  249. data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  250. data/vendor/Eigen/src/LU/Determinant.h +117 -0
  251. data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
  252. data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
  253. data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
  254. data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  255. data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
  256. data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  257. data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
  258. data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
  259. data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
  260. data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  261. data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
  262. data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
  263. data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  264. data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
  265. data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
  266. data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
  267. data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  268. data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
  269. data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
  270. data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
  271. data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  272. data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
  273. data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  274. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
  275. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
  276. data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
  277. data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
  278. data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  279. data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  280. data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
  281. data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
  282. data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  283. data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
  284. data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
  285. data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
  286. data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
  287. data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  288. data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
  289. data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  290. data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
  291. data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
  292. data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
  293. data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  294. data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
  295. data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
  296. data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
  297. data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
  298. data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  299. data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  300. data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  301. data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  302. data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
  303. data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
  304. data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
  305. data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  306. data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
  307. data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  308. data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  309. data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  310. data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
  311. data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  312. data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  313. data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  314. data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  315. data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  316. data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  317. data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  318. data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  319. data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  320. data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  321. data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  322. data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  323. data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
  324. data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
  325. data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
  326. data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
  327. data/vendor/Eigen/src/StlSupport/details.h +84 -0
  328. data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
  329. data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
  330. data/vendor/Eigen/src/misc/Image.h +82 -0
  331. data/vendor/Eigen/src/misc/Kernel.h +79 -0
  332. data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
  333. data/vendor/Eigen/src/misc/blas.h +440 -0
  334. data/vendor/Eigen/src/misc/lapack.h +152 -0
  335. data/vendor/Eigen/src/misc/lapacke.h +16292 -0
  336. data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
  337. data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
  338. data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
  339. data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
  340. data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  341. data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
  342. data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  343. data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  344. data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
  345. data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
  346. data/vendor/aarand/aarand.hpp +114 -0
  347. data/vendor/annoy/annoylib.h +1495 -0
  348. data/vendor/annoy/kissrandom.h +120 -0
  349. data/vendor/annoy/mman.h +242 -0
  350. data/vendor/hnswlib/bruteforce.h +152 -0
  351. data/vendor/hnswlib/hnswalg.h +1192 -0
  352. data/vendor/hnswlib/hnswlib.h +108 -0
  353. data/vendor/hnswlib/space_ip.h +282 -0
  354. data/vendor/hnswlib/space_l2.h +281 -0
  355. data/vendor/hnswlib/visited_list_pool.h +79 -0
  356. data/vendor/irlba/irlba.hpp +575 -0
  357. data/vendor/irlba/lanczos.hpp +212 -0
  358. data/vendor/irlba/parallel.hpp +474 -0
  359. data/vendor/irlba/utils.hpp +224 -0
  360. data/vendor/irlba/wrappers.hpp +228 -0
  361. data/vendor/kmeans/Base.hpp +75 -0
  362. data/vendor/kmeans/Details.hpp +79 -0
  363. data/vendor/kmeans/HartiganWong.hpp +492 -0
  364. data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
  365. data/vendor/kmeans/InitializeNone.hpp +44 -0
  366. data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
  367. data/vendor/kmeans/InitializeRandom.hpp +91 -0
  368. data/vendor/kmeans/Kmeans.hpp +161 -0
  369. data/vendor/kmeans/Lloyd.hpp +134 -0
  370. data/vendor/kmeans/MiniBatch.hpp +269 -0
  371. data/vendor/kmeans/QuickSearch.hpp +179 -0
  372. data/vendor/kmeans/compute_centroids.hpp +32 -0
  373. data/vendor/kmeans/compute_wcss.hpp +27 -0
  374. data/vendor/kmeans/is_edge_case.hpp +42 -0
  375. data/vendor/kmeans/random.hpp +55 -0
  376. data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
  377. data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
  378. data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
  379. data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
  380. data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
  381. data/vendor/knncolle/knncolle.hpp +34 -0
  382. data/vendor/knncolle/utils/Base.hpp +100 -0
  383. data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
  384. data/vendor/knncolle/utils/distances.hpp +98 -0
  385. data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
  386. data/vendor/powerit/PowerIterations.hpp +157 -0
  387. data/vendor/umappp/NeighborList.hpp +37 -0
  388. data/vendor/umappp/Umap.hpp +662 -0
  389. data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
  390. data/vendor/umappp/find_ab.hpp +157 -0
  391. data/vendor/umappp/neighbor_similarities.hpp +136 -0
  392. data/vendor/umappp/optimize_layout.hpp +285 -0
  393. data/vendor/umappp/spectral_init.hpp +181 -0
  394. data/vendor/umappp/umappp.hpp +13 -0
  395. metadata +465 -0
@@ -0,0 +1,150 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008-2015 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_SPARSE_CWISE_UNARY_OP_H
11
+ #define EIGEN_SPARSE_CWISE_UNARY_OP_H
12
+
13
+ namespace Eigen {
14
+
15
+ namespace internal {
16
+
17
+ template<typename UnaryOp, typename ArgType>
18
+ struct unary_evaluator<CwiseUnaryOp<UnaryOp,ArgType>, IteratorBased>
19
+ : public evaluator_base<CwiseUnaryOp<UnaryOp,ArgType> >
20
+ {
21
+ public:
22
+ typedef CwiseUnaryOp<UnaryOp, ArgType> XprType;
23
+
24
+ class InnerIterator;
25
+
26
+ enum {
27
+ CoeffReadCost = int(evaluator<ArgType>::CoeffReadCost) + int(functor_traits<UnaryOp>::Cost),
28
+ Flags = XprType::Flags
29
+ };
30
+
31
+ explicit unary_evaluator(const XprType& op) : m_functor(op.functor()), m_argImpl(op.nestedExpression())
32
+ {
33
+ EIGEN_INTERNAL_CHECK_COST_VALUE(functor_traits<UnaryOp>::Cost);
34
+ EIGEN_INTERNAL_CHECK_COST_VALUE(CoeffReadCost);
35
+ }
36
+
37
+ inline Index nonZerosEstimate() const {
38
+ return m_argImpl.nonZerosEstimate();
39
+ }
40
+
41
+ protected:
42
+ typedef typename evaluator<ArgType>::InnerIterator EvalIterator;
43
+
44
+ const UnaryOp m_functor;
45
+ evaluator<ArgType> m_argImpl;
46
+ };
47
+
48
+ template<typename UnaryOp, typename ArgType>
49
+ class unary_evaluator<CwiseUnaryOp<UnaryOp,ArgType>, IteratorBased>::InnerIterator
50
+ : public unary_evaluator<CwiseUnaryOp<UnaryOp,ArgType>, IteratorBased>::EvalIterator
51
+ {
52
+ protected:
53
+ typedef typename XprType::Scalar Scalar;
54
+ typedef typename unary_evaluator<CwiseUnaryOp<UnaryOp,ArgType>, IteratorBased>::EvalIterator Base;
55
+ public:
56
+
57
+ EIGEN_STRONG_INLINE InnerIterator(const unary_evaluator& unaryOp, Index outer)
58
+ : Base(unaryOp.m_argImpl,outer), m_functor(unaryOp.m_functor)
59
+ {}
60
+
61
+ EIGEN_STRONG_INLINE InnerIterator& operator++()
62
+ { Base::operator++(); return *this; }
63
+
64
+ EIGEN_STRONG_INLINE Scalar value() const { return m_functor(Base::value()); }
65
+
66
+ protected:
67
+ const UnaryOp m_functor;
68
+ private:
69
+ Scalar& valueRef();
70
+ };
71
+
72
+ template<typename ViewOp, typename ArgType>
73
+ struct unary_evaluator<CwiseUnaryView<ViewOp,ArgType>, IteratorBased>
74
+ : public evaluator_base<CwiseUnaryView<ViewOp,ArgType> >
75
+ {
76
+ public:
77
+ typedef CwiseUnaryView<ViewOp, ArgType> XprType;
78
+
79
+ class InnerIterator;
80
+
81
+ enum {
82
+ CoeffReadCost = int(evaluator<ArgType>::CoeffReadCost) + int(functor_traits<ViewOp>::Cost),
83
+ Flags = XprType::Flags
84
+ };
85
+
86
+ explicit unary_evaluator(const XprType& op) : m_functor(op.functor()), m_argImpl(op.nestedExpression())
87
+ {
88
+ EIGEN_INTERNAL_CHECK_COST_VALUE(functor_traits<ViewOp>::Cost);
89
+ EIGEN_INTERNAL_CHECK_COST_VALUE(CoeffReadCost);
90
+ }
91
+
92
+ protected:
93
+ typedef typename evaluator<ArgType>::InnerIterator EvalIterator;
94
+
95
+ const ViewOp m_functor;
96
+ evaluator<ArgType> m_argImpl;
97
+ };
98
+
99
+ template<typename ViewOp, typename ArgType>
100
+ class unary_evaluator<CwiseUnaryView<ViewOp,ArgType>, IteratorBased>::InnerIterator
101
+ : public unary_evaluator<CwiseUnaryView<ViewOp,ArgType>, IteratorBased>::EvalIterator
102
+ {
103
+ protected:
104
+ typedef typename XprType::Scalar Scalar;
105
+ typedef typename unary_evaluator<CwiseUnaryView<ViewOp,ArgType>, IteratorBased>::EvalIterator Base;
106
+ public:
107
+
108
+ EIGEN_STRONG_INLINE InnerIterator(const unary_evaluator& unaryOp, Index outer)
109
+ : Base(unaryOp.m_argImpl,outer), m_functor(unaryOp.m_functor)
110
+ {}
111
+
112
+ EIGEN_STRONG_INLINE InnerIterator& operator++()
113
+ { Base::operator++(); return *this; }
114
+
115
+ EIGEN_STRONG_INLINE Scalar value() const { return m_functor(Base::value()); }
116
+ EIGEN_STRONG_INLINE Scalar& valueRef() { return m_functor(Base::valueRef()); }
117
+
118
+ protected:
119
+ const ViewOp m_functor;
120
+ };
121
+
122
+ } // end namespace internal
123
+
124
+ template<typename Derived>
125
+ EIGEN_STRONG_INLINE Derived&
126
+ SparseMatrixBase<Derived>::operator*=(const Scalar& other)
127
+ {
128
+ typedef typename internal::evaluator<Derived>::InnerIterator EvalIterator;
129
+ internal::evaluator<Derived> thisEval(derived());
130
+ for (Index j=0; j<outerSize(); ++j)
131
+ for (EvalIterator i(thisEval,j); i; ++i)
132
+ i.valueRef() *= other;
133
+ return derived();
134
+ }
135
+
136
+ template<typename Derived>
137
+ EIGEN_STRONG_INLINE Derived&
138
+ SparseMatrixBase<Derived>::operator/=(const Scalar& other)
139
+ {
140
+ typedef typename internal::evaluator<Derived>::InnerIterator EvalIterator;
141
+ internal::evaluator<Derived> thisEval(derived());
142
+ for (Index j=0; j<outerSize(); ++j)
143
+ for (EvalIterator i(thisEval,j); i; ++i)
144
+ i.valueRef() /= other;
145
+ return derived();
146
+ }
147
+
148
+ } // end namespace Eigen
149
+
150
+ #endif // EIGEN_SPARSE_CWISE_UNARY_OP_H
@@ -0,0 +1,342 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008-2015 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_SPARSEDENSEPRODUCT_H
11
+ #define EIGEN_SPARSEDENSEPRODUCT_H
12
+
13
+ namespace Eigen {
14
+
15
+ namespace internal {
16
+
17
+ template <> struct product_promote_storage_type<Sparse,Dense, OuterProduct> { typedef Sparse ret; };
18
+ template <> struct product_promote_storage_type<Dense,Sparse, OuterProduct> { typedef Sparse ret; };
19
+
20
+ template<typename SparseLhsType, typename DenseRhsType, typename DenseResType,
21
+ typename AlphaType,
22
+ int LhsStorageOrder = ((SparseLhsType::Flags&RowMajorBit)==RowMajorBit) ? RowMajor : ColMajor,
23
+ bool ColPerCol = ((DenseRhsType::Flags&RowMajorBit)==0) || DenseRhsType::ColsAtCompileTime==1>
24
+ struct sparse_time_dense_product_impl;
25
+
26
+ template<typename SparseLhsType, typename DenseRhsType, typename DenseResType>
27
+ struct sparse_time_dense_product_impl<SparseLhsType,DenseRhsType,DenseResType, typename DenseResType::Scalar, RowMajor, true>
28
+ {
29
+ typedef typename internal::remove_all<SparseLhsType>::type Lhs;
30
+ typedef typename internal::remove_all<DenseRhsType>::type Rhs;
31
+ typedef typename internal::remove_all<DenseResType>::type Res;
32
+ typedef typename evaluator<Lhs>::InnerIterator LhsInnerIterator;
33
+ typedef evaluator<Lhs> LhsEval;
34
+ static void run(const SparseLhsType& lhs, const DenseRhsType& rhs, DenseResType& res, const typename Res::Scalar& alpha)
35
+ {
36
+ LhsEval lhsEval(lhs);
37
+
38
+ Index n = lhs.outerSize();
39
+ #ifdef EIGEN_HAS_OPENMP
40
+ Eigen::initParallel();
41
+ Index threads = Eigen::nbThreads();
42
+ #endif
43
+
44
+ for(Index c=0; c<rhs.cols(); ++c)
45
+ {
46
+ #ifdef EIGEN_HAS_OPENMP
47
+ // This 20000 threshold has been found experimentally on 2D and 3D Poisson problems.
48
+ // It basically represents the minimal amount of work to be done to be worth it.
49
+ if(threads>1 && lhsEval.nonZerosEstimate() > 20000)
50
+ {
51
+ #pragma omp parallel for schedule(dynamic,(n+threads*4-1)/(threads*4)) num_threads(threads)
52
+ for(Index i=0; i<n; ++i)
53
+ processRow(lhsEval,rhs,res,alpha,i,c);
54
+ }
55
+ else
56
+ #endif
57
+ {
58
+ for(Index i=0; i<n; ++i)
59
+ processRow(lhsEval,rhs,res,alpha,i,c);
60
+ }
61
+ }
62
+ }
63
+
64
+ static void processRow(const LhsEval& lhsEval, const DenseRhsType& rhs, DenseResType& res, const typename Res::Scalar& alpha, Index i, Index col)
65
+ {
66
+ typename Res::Scalar tmp(0);
67
+ for(LhsInnerIterator it(lhsEval,i); it ;++it)
68
+ tmp += it.value() * rhs.coeff(it.index(),col);
69
+ res.coeffRef(i,col) += alpha * tmp;
70
+ }
71
+
72
+ };
73
+
74
+ // FIXME: what is the purpose of the following specialization? Is it for the BlockedSparse format?
75
+ // -> let's disable it for now as it is conflicting with generic scalar*matrix and matrix*scalar operators
76
+ // template<typename T1, typename T2/*, int _Options, typename _StrideType*/>
77
+ // struct ScalarBinaryOpTraits<T1, Ref<T2/*, _Options, _StrideType*/> >
78
+ // {
79
+ // enum {
80
+ // Defined = 1
81
+ // };
82
+ // typedef typename CwiseUnaryOp<scalar_multiple2_op<T1, typename T2::Scalar>, T2>::PlainObject ReturnType;
83
+ // };
84
+
85
+ template<typename SparseLhsType, typename DenseRhsType, typename DenseResType, typename AlphaType>
86
+ struct sparse_time_dense_product_impl<SparseLhsType,DenseRhsType,DenseResType, AlphaType, ColMajor, true>
87
+ {
88
+ typedef typename internal::remove_all<SparseLhsType>::type Lhs;
89
+ typedef typename internal::remove_all<DenseRhsType>::type Rhs;
90
+ typedef typename internal::remove_all<DenseResType>::type Res;
91
+ typedef evaluator<Lhs> LhsEval;
92
+ typedef typename LhsEval::InnerIterator LhsInnerIterator;
93
+ static void run(const SparseLhsType& lhs, const DenseRhsType& rhs, DenseResType& res, const AlphaType& alpha)
94
+ {
95
+ LhsEval lhsEval(lhs);
96
+ for(Index c=0; c<rhs.cols(); ++c)
97
+ {
98
+ for(Index j=0; j<lhs.outerSize(); ++j)
99
+ {
100
+ // typename Res::Scalar rhs_j = alpha * rhs.coeff(j,c);
101
+ typename ScalarBinaryOpTraits<AlphaType, typename Rhs::Scalar>::ReturnType rhs_j(alpha * rhs.coeff(j,c));
102
+ for(LhsInnerIterator it(lhsEval,j); it ;++it)
103
+ res.coeffRef(it.index(),c) += it.value() * rhs_j;
104
+ }
105
+ }
106
+ }
107
+ };
108
+
109
+ template<typename SparseLhsType, typename DenseRhsType, typename DenseResType>
110
+ struct sparse_time_dense_product_impl<SparseLhsType,DenseRhsType,DenseResType, typename DenseResType::Scalar, RowMajor, false>
111
+ {
112
+ typedef typename internal::remove_all<SparseLhsType>::type Lhs;
113
+ typedef typename internal::remove_all<DenseRhsType>::type Rhs;
114
+ typedef typename internal::remove_all<DenseResType>::type Res;
115
+ typedef evaluator<Lhs> LhsEval;
116
+ typedef typename LhsEval::InnerIterator LhsInnerIterator;
117
+ static void run(const SparseLhsType& lhs, const DenseRhsType& rhs, DenseResType& res, const typename Res::Scalar& alpha)
118
+ {
119
+ Index n = lhs.rows();
120
+ LhsEval lhsEval(lhs);
121
+
122
+ #ifdef EIGEN_HAS_OPENMP
123
+ Eigen::initParallel();
124
+ Index threads = Eigen::nbThreads();
125
+ // This 20000 threshold has been found experimentally on 2D and 3D Poisson problems.
126
+ // It basically represents the minimal amount of work to be done to be worth it.
127
+ if(threads>1 && lhsEval.nonZerosEstimate()*rhs.cols() > 20000)
128
+ {
129
+ #pragma omp parallel for schedule(dynamic,(n+threads*4-1)/(threads*4)) num_threads(threads)
130
+ for(Index i=0; i<n; ++i)
131
+ processRow(lhsEval,rhs,res,alpha,i);
132
+ }
133
+ else
134
+ #endif
135
+ {
136
+ for(Index i=0; i<n; ++i)
137
+ processRow(lhsEval, rhs, res, alpha, i);
138
+ }
139
+ }
140
+
141
+ static void processRow(const LhsEval& lhsEval, const DenseRhsType& rhs, Res& res, const typename Res::Scalar& alpha, Index i)
142
+ {
143
+ typename Res::RowXpr res_i(res.row(i));
144
+ for(LhsInnerIterator it(lhsEval,i); it ;++it)
145
+ res_i += (alpha*it.value()) * rhs.row(it.index());
146
+ }
147
+ };
148
+
149
+ template<typename SparseLhsType, typename DenseRhsType, typename DenseResType>
150
+ struct sparse_time_dense_product_impl<SparseLhsType,DenseRhsType,DenseResType, typename DenseResType::Scalar, ColMajor, false>
151
+ {
152
+ typedef typename internal::remove_all<SparseLhsType>::type Lhs;
153
+ typedef typename internal::remove_all<DenseRhsType>::type Rhs;
154
+ typedef typename internal::remove_all<DenseResType>::type Res;
155
+ typedef typename evaluator<Lhs>::InnerIterator LhsInnerIterator;
156
+ static void run(const SparseLhsType& lhs, const DenseRhsType& rhs, DenseResType& res, const typename Res::Scalar& alpha)
157
+ {
158
+ evaluator<Lhs> lhsEval(lhs);
159
+ for(Index j=0; j<lhs.outerSize(); ++j)
160
+ {
161
+ typename Rhs::ConstRowXpr rhs_j(rhs.row(j));
162
+ for(LhsInnerIterator it(lhsEval,j); it ;++it)
163
+ res.row(it.index()) += (alpha*it.value()) * rhs_j;
164
+ }
165
+ }
166
+ };
167
+
168
+ template<typename SparseLhsType, typename DenseRhsType, typename DenseResType,typename AlphaType>
169
+ inline void sparse_time_dense_product(const SparseLhsType& lhs, const DenseRhsType& rhs, DenseResType& res, const AlphaType& alpha)
170
+ {
171
+ sparse_time_dense_product_impl<SparseLhsType,DenseRhsType,DenseResType, AlphaType>::run(lhs, rhs, res, alpha);
172
+ }
173
+
174
+ } // end namespace internal
175
+
176
+ namespace internal {
177
+
178
+ template<typename Lhs, typename Rhs, int ProductType>
179
+ struct generic_product_impl<Lhs, Rhs, SparseShape, DenseShape, ProductType>
180
+ : generic_product_impl_base<Lhs,Rhs,generic_product_impl<Lhs,Rhs,SparseShape,DenseShape,ProductType> >
181
+ {
182
+ typedef typename Product<Lhs,Rhs>::Scalar Scalar;
183
+
184
+ template<typename Dest>
185
+ static void scaleAndAddTo(Dest& dst, const Lhs& lhs, const Rhs& rhs, const Scalar& alpha)
186
+ {
187
+ typedef typename nested_eval<Lhs,((Rhs::Flags&RowMajorBit)==0) ? 1 : Rhs::ColsAtCompileTime>::type LhsNested;
188
+ typedef typename nested_eval<Rhs,((Lhs::Flags&RowMajorBit)==0) ? 1 : Dynamic>::type RhsNested;
189
+ LhsNested lhsNested(lhs);
190
+ RhsNested rhsNested(rhs);
191
+ internal::sparse_time_dense_product(lhsNested, rhsNested, dst, alpha);
192
+ }
193
+ };
194
+
195
+ template<typename Lhs, typename Rhs, int ProductType>
196
+ struct generic_product_impl<Lhs, Rhs, SparseTriangularShape, DenseShape, ProductType>
197
+ : generic_product_impl<Lhs, Rhs, SparseShape, DenseShape, ProductType>
198
+ {};
199
+
200
+ template<typename Lhs, typename Rhs, int ProductType>
201
+ struct generic_product_impl<Lhs, Rhs, DenseShape, SparseShape, ProductType>
202
+ : generic_product_impl_base<Lhs,Rhs,generic_product_impl<Lhs,Rhs,DenseShape,SparseShape,ProductType> >
203
+ {
204
+ typedef typename Product<Lhs,Rhs>::Scalar Scalar;
205
+
206
+ template<typename Dst>
207
+ static void scaleAndAddTo(Dst& dst, const Lhs& lhs, const Rhs& rhs, const Scalar& alpha)
208
+ {
209
+ typedef typename nested_eval<Lhs,((Rhs::Flags&RowMajorBit)==0) ? Dynamic : 1>::type LhsNested;
210
+ typedef typename nested_eval<Rhs,((Lhs::Flags&RowMajorBit)==RowMajorBit) ? 1 : Lhs::RowsAtCompileTime>::type RhsNested;
211
+ LhsNested lhsNested(lhs);
212
+ RhsNested rhsNested(rhs);
213
+
214
+ // transpose everything
215
+ Transpose<Dst> dstT(dst);
216
+ internal::sparse_time_dense_product(rhsNested.transpose(), lhsNested.transpose(), dstT, alpha);
217
+ }
218
+ };
219
+
220
+ template<typename Lhs, typename Rhs, int ProductType>
221
+ struct generic_product_impl<Lhs, Rhs, DenseShape, SparseTriangularShape, ProductType>
222
+ : generic_product_impl<Lhs, Rhs, DenseShape, SparseShape, ProductType>
223
+ {};
224
+
225
+ template<typename LhsT, typename RhsT, bool NeedToTranspose>
226
+ struct sparse_dense_outer_product_evaluator
227
+ {
228
+ protected:
229
+ typedef typename conditional<NeedToTranspose,RhsT,LhsT>::type Lhs1;
230
+ typedef typename conditional<NeedToTranspose,LhsT,RhsT>::type ActualRhs;
231
+ typedef Product<LhsT,RhsT,DefaultProduct> ProdXprType;
232
+
233
+ // if the actual left-hand side is a dense vector,
234
+ // then build a sparse-view so that we can seamlessly iterate over it.
235
+ typedef typename conditional<is_same<typename internal::traits<Lhs1>::StorageKind,Sparse>::value,
236
+ Lhs1, SparseView<Lhs1> >::type ActualLhs;
237
+ typedef typename conditional<is_same<typename internal::traits<Lhs1>::StorageKind,Sparse>::value,
238
+ Lhs1 const&, SparseView<Lhs1> >::type LhsArg;
239
+
240
+ typedef evaluator<ActualLhs> LhsEval;
241
+ typedef evaluator<ActualRhs> RhsEval;
242
+ typedef typename evaluator<ActualLhs>::InnerIterator LhsIterator;
243
+ typedef typename ProdXprType::Scalar Scalar;
244
+
245
+ public:
246
+ enum {
247
+ Flags = NeedToTranspose ? RowMajorBit : 0,
248
+ CoeffReadCost = HugeCost
249
+ };
250
+
251
+ class InnerIterator : public LhsIterator
252
+ {
253
+ public:
254
+ InnerIterator(const sparse_dense_outer_product_evaluator &xprEval, Index outer)
255
+ : LhsIterator(xprEval.m_lhsXprImpl, 0),
256
+ m_outer(outer),
257
+ m_empty(false),
258
+ m_factor(get(xprEval.m_rhsXprImpl, outer, typename internal::traits<ActualRhs>::StorageKind() ))
259
+ {}
260
+
261
+ EIGEN_STRONG_INLINE Index outer() const { return m_outer; }
262
+ EIGEN_STRONG_INLINE Index row() const { return NeedToTranspose ? m_outer : LhsIterator::index(); }
263
+ EIGEN_STRONG_INLINE Index col() const { return NeedToTranspose ? LhsIterator::index() : m_outer; }
264
+
265
+ EIGEN_STRONG_INLINE Scalar value() const { return LhsIterator::value() * m_factor; }
266
+ EIGEN_STRONG_INLINE operator bool() const { return LhsIterator::operator bool() && (!m_empty); }
267
+
268
+ protected:
269
+ Scalar get(const RhsEval &rhs, Index outer, Dense = Dense()) const
270
+ {
271
+ return rhs.coeff(outer);
272
+ }
273
+
274
+ Scalar get(const RhsEval &rhs, Index outer, Sparse = Sparse())
275
+ {
276
+ typename RhsEval::InnerIterator it(rhs, outer);
277
+ if (it && it.index()==0 && it.value()!=Scalar(0))
278
+ return it.value();
279
+ m_empty = true;
280
+ return Scalar(0);
281
+ }
282
+
283
+ Index m_outer;
284
+ bool m_empty;
285
+ Scalar m_factor;
286
+ };
287
+
288
+ sparse_dense_outer_product_evaluator(const Lhs1 &lhs, const ActualRhs &rhs)
289
+ : m_lhs(lhs), m_lhsXprImpl(m_lhs), m_rhsXprImpl(rhs)
290
+ {
291
+ EIGEN_INTERNAL_CHECK_COST_VALUE(CoeffReadCost);
292
+ }
293
+
294
+ // transpose case
295
+ sparse_dense_outer_product_evaluator(const ActualRhs &rhs, const Lhs1 &lhs)
296
+ : m_lhs(lhs), m_lhsXprImpl(m_lhs), m_rhsXprImpl(rhs)
297
+ {
298
+ EIGEN_INTERNAL_CHECK_COST_VALUE(CoeffReadCost);
299
+ }
300
+
301
+ protected:
302
+ const LhsArg m_lhs;
303
+ evaluator<ActualLhs> m_lhsXprImpl;
304
+ evaluator<ActualRhs> m_rhsXprImpl;
305
+ };
306
+
307
+ // sparse * dense outer product
308
+ template<typename Lhs, typename Rhs>
309
+ struct product_evaluator<Product<Lhs, Rhs, DefaultProduct>, OuterProduct, SparseShape, DenseShape>
310
+ : sparse_dense_outer_product_evaluator<Lhs,Rhs, Lhs::IsRowMajor>
311
+ {
312
+ typedef sparse_dense_outer_product_evaluator<Lhs,Rhs, Lhs::IsRowMajor> Base;
313
+
314
+ typedef Product<Lhs, Rhs> XprType;
315
+ typedef typename XprType::PlainObject PlainObject;
316
+
317
+ explicit product_evaluator(const XprType& xpr)
318
+ : Base(xpr.lhs(), xpr.rhs())
319
+ {}
320
+
321
+ };
322
+
323
+ template<typename Lhs, typename Rhs>
324
+ struct product_evaluator<Product<Lhs, Rhs, DefaultProduct>, OuterProduct, DenseShape, SparseShape>
325
+ : sparse_dense_outer_product_evaluator<Lhs,Rhs, Rhs::IsRowMajor>
326
+ {
327
+ typedef sparse_dense_outer_product_evaluator<Lhs,Rhs, Rhs::IsRowMajor> Base;
328
+
329
+ typedef Product<Lhs, Rhs> XprType;
330
+ typedef typename XprType::PlainObject PlainObject;
331
+
332
+ explicit product_evaluator(const XprType& xpr)
333
+ : Base(xpr.lhs(), xpr.rhs())
334
+ {}
335
+
336
+ };
337
+
338
+ } // end namespace internal
339
+
340
+ } // end namespace Eigen
341
+
342
+ #endif // EIGEN_SPARSEDENSEPRODUCT_H
@@ -0,0 +1,138 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2009-2015 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_SPARSE_DIAGONAL_PRODUCT_H
11
+ #define EIGEN_SPARSE_DIAGONAL_PRODUCT_H
12
+
13
+ namespace Eigen {
14
+
15
+ // The product of a diagonal matrix with a sparse matrix can be easily
16
+ // implemented using expression template.
17
+ // We have two consider very different cases:
18
+ // 1 - diag * row-major sparse
19
+ // => each inner vector <=> scalar * sparse vector product
20
+ // => so we can reuse CwiseUnaryOp::InnerIterator
21
+ // 2 - diag * col-major sparse
22
+ // => each inner vector <=> densevector * sparse vector cwise product
23
+ // => again, we can reuse specialization of CwiseBinaryOp::InnerIterator
24
+ // for that particular case
25
+ // The two other cases are symmetric.
26
+
27
+ namespace internal {
28
+
29
+ enum {
30
+ SDP_AsScalarProduct,
31
+ SDP_AsCwiseProduct
32
+ };
33
+
34
+ template<typename SparseXprType, typename DiagonalCoeffType, int SDP_Tag>
35
+ struct sparse_diagonal_product_evaluator;
36
+
37
+ template<typename Lhs, typename Rhs, int ProductTag>
38
+ struct product_evaluator<Product<Lhs, Rhs, DefaultProduct>, ProductTag, DiagonalShape, SparseShape>
39
+ : public sparse_diagonal_product_evaluator<Rhs, typename Lhs::DiagonalVectorType, Rhs::Flags&RowMajorBit?SDP_AsScalarProduct:SDP_AsCwiseProduct>
40
+ {
41
+ typedef Product<Lhs, Rhs, DefaultProduct> XprType;
42
+ enum { CoeffReadCost = HugeCost, Flags = Rhs::Flags&RowMajorBit, Alignment = 0 }; // FIXME CoeffReadCost & Flags
43
+
44
+ typedef sparse_diagonal_product_evaluator<Rhs, typename Lhs::DiagonalVectorType, Rhs::Flags&RowMajorBit?SDP_AsScalarProduct:SDP_AsCwiseProduct> Base;
45
+ explicit product_evaluator(const XprType& xpr) : Base(xpr.rhs(), xpr.lhs().diagonal()) {}
46
+ };
47
+
48
+ template<typename Lhs, typename Rhs, int ProductTag>
49
+ struct product_evaluator<Product<Lhs, Rhs, DefaultProduct>, ProductTag, SparseShape, DiagonalShape>
50
+ : public sparse_diagonal_product_evaluator<Lhs, Transpose<const typename Rhs::DiagonalVectorType>, Lhs::Flags&RowMajorBit?SDP_AsCwiseProduct:SDP_AsScalarProduct>
51
+ {
52
+ typedef Product<Lhs, Rhs, DefaultProduct> XprType;
53
+ enum { CoeffReadCost = HugeCost, Flags = Lhs::Flags&RowMajorBit, Alignment = 0 }; // FIXME CoeffReadCost & Flags
54
+
55
+ typedef sparse_diagonal_product_evaluator<Lhs, Transpose<const typename Rhs::DiagonalVectorType>, Lhs::Flags&RowMajorBit?SDP_AsCwiseProduct:SDP_AsScalarProduct> Base;
56
+ explicit product_evaluator(const XprType& xpr) : Base(xpr.lhs(), xpr.rhs().diagonal().transpose()) {}
57
+ };
58
+
59
+ template<typename SparseXprType, typename DiagonalCoeffType>
60
+ struct sparse_diagonal_product_evaluator<SparseXprType, DiagonalCoeffType, SDP_AsScalarProduct>
61
+ {
62
+ protected:
63
+ typedef typename evaluator<SparseXprType>::InnerIterator SparseXprInnerIterator;
64
+ typedef typename SparseXprType::Scalar Scalar;
65
+
66
+ public:
67
+ class InnerIterator : public SparseXprInnerIterator
68
+ {
69
+ public:
70
+ InnerIterator(const sparse_diagonal_product_evaluator &xprEval, Index outer)
71
+ : SparseXprInnerIterator(xprEval.m_sparseXprImpl, outer),
72
+ m_coeff(xprEval.m_diagCoeffImpl.coeff(outer))
73
+ {}
74
+
75
+ EIGEN_STRONG_INLINE Scalar value() const { return m_coeff * SparseXprInnerIterator::value(); }
76
+ protected:
77
+ typename DiagonalCoeffType::Scalar m_coeff;
78
+ };
79
+
80
+ sparse_diagonal_product_evaluator(const SparseXprType &sparseXpr, const DiagonalCoeffType &diagCoeff)
81
+ : m_sparseXprImpl(sparseXpr), m_diagCoeffImpl(diagCoeff)
82
+ {}
83
+
84
+ Index nonZerosEstimate() const { return m_sparseXprImpl.nonZerosEstimate(); }
85
+
86
+ protected:
87
+ evaluator<SparseXprType> m_sparseXprImpl;
88
+ evaluator<DiagonalCoeffType> m_diagCoeffImpl;
89
+ };
90
+
91
+
92
+ template<typename SparseXprType, typename DiagCoeffType>
93
+ struct sparse_diagonal_product_evaluator<SparseXprType, DiagCoeffType, SDP_AsCwiseProduct>
94
+ {
95
+ typedef typename SparseXprType::Scalar Scalar;
96
+ typedef typename SparseXprType::StorageIndex StorageIndex;
97
+
98
+ typedef typename nested_eval<DiagCoeffType,SparseXprType::IsRowMajor ? SparseXprType::RowsAtCompileTime
99
+ : SparseXprType::ColsAtCompileTime>::type DiagCoeffNested;
100
+
101
+ class InnerIterator
102
+ {
103
+ typedef typename evaluator<SparseXprType>::InnerIterator SparseXprIter;
104
+ public:
105
+ InnerIterator(const sparse_diagonal_product_evaluator &xprEval, Index outer)
106
+ : m_sparseIter(xprEval.m_sparseXprEval, outer), m_diagCoeffNested(xprEval.m_diagCoeffNested)
107
+ {}
108
+
109
+ inline Scalar value() const { return m_sparseIter.value() * m_diagCoeffNested.coeff(index()); }
110
+ inline StorageIndex index() const { return m_sparseIter.index(); }
111
+ inline Index outer() const { return m_sparseIter.outer(); }
112
+ inline Index col() const { return SparseXprType::IsRowMajor ? m_sparseIter.index() : m_sparseIter.outer(); }
113
+ inline Index row() const { return SparseXprType::IsRowMajor ? m_sparseIter.outer() : m_sparseIter.index(); }
114
+
115
+ EIGEN_STRONG_INLINE InnerIterator& operator++() { ++m_sparseIter; return *this; }
116
+ inline operator bool() const { return m_sparseIter; }
117
+
118
+ protected:
119
+ SparseXprIter m_sparseIter;
120
+ DiagCoeffNested m_diagCoeffNested;
121
+ };
122
+
123
+ sparse_diagonal_product_evaluator(const SparseXprType &sparseXpr, const DiagCoeffType &diagCoeff)
124
+ : m_sparseXprEval(sparseXpr), m_diagCoeffNested(diagCoeff)
125
+ {}
126
+
127
+ Index nonZerosEstimate() const { return m_sparseXprEval.nonZerosEstimate(); }
128
+
129
+ protected:
130
+ evaluator<SparseXprType> m_sparseXprEval;
131
+ DiagCoeffNested m_diagCoeffNested;
132
+ };
133
+
134
+ } // end namespace internal
135
+
136
+ } // end namespace Eigen
137
+
138
+ #endif // EIGEN_SPARSE_DIAGONAL_PRODUCT_H