umappp 0.1.2
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- checksums.yaml +7 -0
- data/LICENSE.txt +25 -0
- data/README.md +110 -0
- data/ext/umappp/extconf.rb +25 -0
- data/ext/umappp/numo.hpp +867 -0
- data/ext/umappp/umappp.cpp +225 -0
- data/lib/umappp/version.rb +5 -0
- data/lib/umappp.rb +41 -0
- data/vendor/Eigen/Cholesky +45 -0
- data/vendor/Eigen/CholmodSupport +48 -0
- data/vendor/Eigen/Core +384 -0
- data/vendor/Eigen/Dense +7 -0
- data/vendor/Eigen/Eigen +2 -0
- data/vendor/Eigen/Eigenvalues +60 -0
- data/vendor/Eigen/Geometry +59 -0
- data/vendor/Eigen/Householder +29 -0
- data/vendor/Eigen/IterativeLinearSolvers +48 -0
- data/vendor/Eigen/Jacobi +32 -0
- data/vendor/Eigen/KLUSupport +41 -0
- data/vendor/Eigen/LU +47 -0
- data/vendor/Eigen/MetisSupport +35 -0
- data/vendor/Eigen/OrderingMethods +70 -0
- data/vendor/Eigen/PaStiXSupport +49 -0
- data/vendor/Eigen/PardisoSupport +35 -0
- data/vendor/Eigen/QR +50 -0
- data/vendor/Eigen/QtAlignedMalloc +39 -0
- data/vendor/Eigen/SPQRSupport +34 -0
- data/vendor/Eigen/SVD +50 -0
- data/vendor/Eigen/Sparse +34 -0
- data/vendor/Eigen/SparseCholesky +37 -0
- data/vendor/Eigen/SparseCore +69 -0
- data/vendor/Eigen/SparseLU +50 -0
- data/vendor/Eigen/SparseQR +36 -0
- data/vendor/Eigen/StdDeque +27 -0
- data/vendor/Eigen/StdList +26 -0
- data/vendor/Eigen/StdVector +27 -0
- data/vendor/Eigen/SuperLUSupport +64 -0
- data/vendor/Eigen/UmfPackSupport +40 -0
- data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
- data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
- data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
- data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
- data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
- data/vendor/Eigen/src/Core/Array.h +417 -0
- data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
- data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
- data/vendor/Eigen/src/Core/Assign.h +90 -0
- data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
- data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
- data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
- data/vendor/Eigen/src/Core/Block.h +448 -0
- data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
- data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
- data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
- data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
- data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
- data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
- data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
- data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
- data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
- data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
- data/vendor/Eigen/src/Core/DenseBase.h +701 -0
- data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
- data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
- data/vendor/Eigen/src/Core/Diagonal.h +258 -0
- data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
- data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
- data/vendor/Eigen/src/Core/Dot.h +318 -0
- data/vendor/Eigen/src/Core/EigenBase.h +160 -0
- data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
- data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
- data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
- data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
- data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
- data/vendor/Eigen/src/Core/IO.h +258 -0
- data/vendor/Eigen/src/Core/IndexedView.h +237 -0
- data/vendor/Eigen/src/Core/Inverse.h +117 -0
- data/vendor/Eigen/src/Core/Map.h +171 -0
- data/vendor/Eigen/src/Core/MapBase.h +310 -0
- data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
- data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
- data/vendor/Eigen/src/Core/Matrix.h +565 -0
- data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
- data/vendor/Eigen/src/Core/NestByValue.h +85 -0
- data/vendor/Eigen/src/Core/NoAlias.h +109 -0
- data/vendor/Eigen/src/Core/NumTraits.h +335 -0
- data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
- data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
- data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
- data/vendor/Eigen/src/Core/Product.h +191 -0
- data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
- data/vendor/Eigen/src/Core/Random.h +218 -0
- data/vendor/Eigen/src/Core/Redux.h +515 -0
- data/vendor/Eigen/src/Core/Ref.h +381 -0
- data/vendor/Eigen/src/Core/Replicate.h +142 -0
- data/vendor/Eigen/src/Core/Reshaped.h +454 -0
- data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
- data/vendor/Eigen/src/Core/Reverse.h +217 -0
- data/vendor/Eigen/src/Core/Select.h +164 -0
- data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
- data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
- data/vendor/Eigen/src/Core/Solve.h +188 -0
- data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
- data/vendor/Eigen/src/Core/SolverBase.h +168 -0
- data/vendor/Eigen/src/Core/StableNorm.h +251 -0
- data/vendor/Eigen/src/Core/StlIterators.h +463 -0
- data/vendor/Eigen/src/Core/Stride.h +116 -0
- data/vendor/Eigen/src/Core/Swap.h +68 -0
- data/vendor/Eigen/src/Core/Transpose.h +464 -0
- data/vendor/Eigen/src/Core/Transpositions.h +386 -0
- data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
- data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
- data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
- data/vendor/Eigen/src/Core/Visitor.h +381 -0
- data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
- data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
- data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
- data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
- data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
- data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
- data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
- data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
- data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
- data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
- data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
- data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
- data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
- data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
- data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
- data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
- data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
- data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
- data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
- data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
- data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
- data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
- data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
- data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
- data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
- data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
- data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
- data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
- data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
- data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
- data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
- data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
- data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
- data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
- data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
- data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
- data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
- data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
- data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
- data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
- data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
- data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
- data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
- data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
- data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
- data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
- data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
- data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
- data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
- data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
- data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
- data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
- data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
- data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
- data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
- data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
- data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
- data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
- data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
- data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
- data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
- data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
- data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
- data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
- data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
- data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
- data/vendor/Eigen/src/Core/util/Constants.h +563 -0
- data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
- data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
- data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
- data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
- data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
- data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
- data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
- data/vendor/Eigen/src/Core/util/Meta.h +812 -0
- data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
- data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
- data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
- data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
- data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
- data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
- data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
- data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
- data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
- data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
- data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
- data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
- data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
- data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
- data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
- data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
- data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
- data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
- data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
- data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
- data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
- data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
- data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
- data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
- data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
- data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
- data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
- data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
- data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
- data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
- data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
- data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
- data/vendor/Eigen/src/Geometry/Translation.h +202 -0
- data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
- data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
- data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
- data/vendor/Eigen/src/Householder/Householder.h +176 -0
- data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
- data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
- data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
- data/vendor/Eigen/src/LU/Determinant.h +117 -0
- data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
- data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
- data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
- data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
- data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
- data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
- data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
- data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
- data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
- data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
- data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
- data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
- data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
- data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
- data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
- data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
- data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
- data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
- data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
- data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
- data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
- data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
- data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
- data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
- data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
- data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
- data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
- data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
- data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
- data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
- data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
- data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
- data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
- data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
- data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
- data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
- data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
- data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
- data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
- data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
- data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
- data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
- data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
- data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
- data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
- data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
- data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
- data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
- data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
- data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
- data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
- data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
- data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
- data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
- data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
- data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
- data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
- data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
- data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
- data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
- data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
- data/vendor/Eigen/src/StlSupport/details.h +84 -0
- data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
- data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
- data/vendor/Eigen/src/misc/Image.h +82 -0
- data/vendor/Eigen/src/misc/Kernel.h +79 -0
- data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
- data/vendor/Eigen/src/misc/blas.h +440 -0
- data/vendor/Eigen/src/misc/lapack.h +152 -0
- data/vendor/Eigen/src/misc/lapacke.h +16292 -0
- data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
- data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
- data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
- data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
- data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
- data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
- data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
- data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
- data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
- data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
- data/vendor/aarand/aarand.hpp +114 -0
- data/vendor/annoy/annoylib.h +1495 -0
- data/vendor/annoy/kissrandom.h +120 -0
- data/vendor/annoy/mman.h +242 -0
- data/vendor/hnswlib/bruteforce.h +152 -0
- data/vendor/hnswlib/hnswalg.h +1192 -0
- data/vendor/hnswlib/hnswlib.h +108 -0
- data/vendor/hnswlib/space_ip.h +282 -0
- data/vendor/hnswlib/space_l2.h +281 -0
- data/vendor/hnswlib/visited_list_pool.h +79 -0
- data/vendor/irlba/irlba.hpp +575 -0
- data/vendor/irlba/lanczos.hpp +212 -0
- data/vendor/irlba/parallel.hpp +474 -0
- data/vendor/irlba/utils.hpp +224 -0
- data/vendor/irlba/wrappers.hpp +228 -0
- data/vendor/kmeans/Base.hpp +75 -0
- data/vendor/kmeans/Details.hpp +79 -0
- data/vendor/kmeans/HartiganWong.hpp +492 -0
- data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
- data/vendor/kmeans/InitializeNone.hpp +44 -0
- data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
- data/vendor/kmeans/InitializeRandom.hpp +91 -0
- data/vendor/kmeans/Kmeans.hpp +161 -0
- data/vendor/kmeans/Lloyd.hpp +134 -0
- data/vendor/kmeans/MiniBatch.hpp +269 -0
- data/vendor/kmeans/QuickSearch.hpp +179 -0
- data/vendor/kmeans/compute_centroids.hpp +32 -0
- data/vendor/kmeans/compute_wcss.hpp +27 -0
- data/vendor/kmeans/is_edge_case.hpp +42 -0
- data/vendor/kmeans/random.hpp +55 -0
- data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
- data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
- data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
- data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
- data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
- data/vendor/knncolle/knncolle.hpp +34 -0
- data/vendor/knncolle/utils/Base.hpp +100 -0
- data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
- data/vendor/knncolle/utils/distances.hpp +98 -0
- data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
- data/vendor/powerit/PowerIterations.hpp +157 -0
- data/vendor/umappp/NeighborList.hpp +37 -0
- data/vendor/umappp/Umap.hpp +662 -0
- data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
- data/vendor/umappp/find_ab.hpp +157 -0
- data/vendor/umappp/neighbor_similarities.hpp +136 -0
- data/vendor/umappp/optimize_layout.hpp +285 -0
- data/vendor/umappp/spectral_init.hpp +181 -0
- data/vendor/umappp/umappp.hpp +13 -0
- metadata +465 -0
@@ -0,0 +1,150 @@
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// This file is part of Eigen, a lightweight C++ template library
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// for linear algebra.
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//
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// Copyright (C) 2008-2015 Gael Guennebaud <gael.guennebaud@inria.fr>
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//
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// This Source Code Form is subject to the terms of the Mozilla
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// Public License v. 2.0. If a copy of the MPL was not distributed
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// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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#ifndef EIGEN_SPARSE_CWISE_UNARY_OP_H
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#define EIGEN_SPARSE_CWISE_UNARY_OP_H
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namespace Eigen {
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namespace internal {
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template<typename UnaryOp, typename ArgType>
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struct unary_evaluator<CwiseUnaryOp<UnaryOp,ArgType>, IteratorBased>
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: public evaluator_base<CwiseUnaryOp<UnaryOp,ArgType> >
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{
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public:
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typedef CwiseUnaryOp<UnaryOp, ArgType> XprType;
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class InnerIterator;
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enum {
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CoeffReadCost = int(evaluator<ArgType>::CoeffReadCost) + int(functor_traits<UnaryOp>::Cost),
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Flags = XprType::Flags
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};
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explicit unary_evaluator(const XprType& op) : m_functor(op.functor()), m_argImpl(op.nestedExpression())
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{
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EIGEN_INTERNAL_CHECK_COST_VALUE(functor_traits<UnaryOp>::Cost);
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EIGEN_INTERNAL_CHECK_COST_VALUE(CoeffReadCost);
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}
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inline Index nonZerosEstimate() const {
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return m_argImpl.nonZerosEstimate();
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}
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protected:
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typedef typename evaluator<ArgType>::InnerIterator EvalIterator;
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const UnaryOp m_functor;
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evaluator<ArgType> m_argImpl;
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};
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template<typename UnaryOp, typename ArgType>
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class unary_evaluator<CwiseUnaryOp<UnaryOp,ArgType>, IteratorBased>::InnerIterator
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: public unary_evaluator<CwiseUnaryOp<UnaryOp,ArgType>, IteratorBased>::EvalIterator
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{
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protected:
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typedef typename XprType::Scalar Scalar;
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typedef typename unary_evaluator<CwiseUnaryOp<UnaryOp,ArgType>, IteratorBased>::EvalIterator Base;
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public:
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EIGEN_STRONG_INLINE InnerIterator(const unary_evaluator& unaryOp, Index outer)
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: Base(unaryOp.m_argImpl,outer), m_functor(unaryOp.m_functor)
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{}
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EIGEN_STRONG_INLINE InnerIterator& operator++()
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{ Base::operator++(); return *this; }
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EIGEN_STRONG_INLINE Scalar value() const { return m_functor(Base::value()); }
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protected:
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const UnaryOp m_functor;
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private:
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Scalar& valueRef();
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};
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template<typename ViewOp, typename ArgType>
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struct unary_evaluator<CwiseUnaryView<ViewOp,ArgType>, IteratorBased>
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: public evaluator_base<CwiseUnaryView<ViewOp,ArgType> >
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{
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public:
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typedef CwiseUnaryView<ViewOp, ArgType> XprType;
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class InnerIterator;
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enum {
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CoeffReadCost = int(evaluator<ArgType>::CoeffReadCost) + int(functor_traits<ViewOp>::Cost),
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Flags = XprType::Flags
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};
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explicit unary_evaluator(const XprType& op) : m_functor(op.functor()), m_argImpl(op.nestedExpression())
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{
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EIGEN_INTERNAL_CHECK_COST_VALUE(functor_traits<ViewOp>::Cost);
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EIGEN_INTERNAL_CHECK_COST_VALUE(CoeffReadCost);
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}
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protected:
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typedef typename evaluator<ArgType>::InnerIterator EvalIterator;
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const ViewOp m_functor;
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evaluator<ArgType> m_argImpl;
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};
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template<typename ViewOp, typename ArgType>
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class unary_evaluator<CwiseUnaryView<ViewOp,ArgType>, IteratorBased>::InnerIterator
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: public unary_evaluator<CwiseUnaryView<ViewOp,ArgType>, IteratorBased>::EvalIterator
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{
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protected:
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typedef typename XprType::Scalar Scalar;
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typedef typename unary_evaluator<CwiseUnaryView<ViewOp,ArgType>, IteratorBased>::EvalIterator Base;
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public:
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EIGEN_STRONG_INLINE InnerIterator(const unary_evaluator& unaryOp, Index outer)
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: Base(unaryOp.m_argImpl,outer), m_functor(unaryOp.m_functor)
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{}
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EIGEN_STRONG_INLINE InnerIterator& operator++()
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{ Base::operator++(); return *this; }
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EIGEN_STRONG_INLINE Scalar value() const { return m_functor(Base::value()); }
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EIGEN_STRONG_INLINE Scalar& valueRef() { return m_functor(Base::valueRef()); }
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protected:
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const ViewOp m_functor;
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};
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} // end namespace internal
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template<typename Derived>
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EIGEN_STRONG_INLINE Derived&
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SparseMatrixBase<Derived>::operator*=(const Scalar& other)
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{
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typedef typename internal::evaluator<Derived>::InnerIterator EvalIterator;
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internal::evaluator<Derived> thisEval(derived());
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for (Index j=0; j<outerSize(); ++j)
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for (EvalIterator i(thisEval,j); i; ++i)
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i.valueRef() *= other;
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return derived();
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}
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template<typename Derived>
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EIGEN_STRONG_INLINE Derived&
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SparseMatrixBase<Derived>::operator/=(const Scalar& other)
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{
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typedef typename internal::evaluator<Derived>::InnerIterator EvalIterator;
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internal::evaluator<Derived> thisEval(derived());
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for (Index j=0; j<outerSize(); ++j)
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for (EvalIterator i(thisEval,j); i; ++i)
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i.valueRef() /= other;
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return derived();
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}
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} // end namespace Eigen
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#endif // EIGEN_SPARSE_CWISE_UNARY_OP_H
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// This file is part of Eigen, a lightweight C++ template library
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// for linear algebra.
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//
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// Copyright (C) 2008-2015 Gael Guennebaud <gael.guennebaud@inria.fr>
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//
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// This Source Code Form is subject to the terms of the Mozilla
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// Public License v. 2.0. If a copy of the MPL was not distributed
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// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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#ifndef EIGEN_SPARSEDENSEPRODUCT_H
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#define EIGEN_SPARSEDENSEPRODUCT_H
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namespace Eigen {
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namespace internal {
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template <> struct product_promote_storage_type<Sparse,Dense, OuterProduct> { typedef Sparse ret; };
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template <> struct product_promote_storage_type<Dense,Sparse, OuterProduct> { typedef Sparse ret; };
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template<typename SparseLhsType, typename DenseRhsType, typename DenseResType,
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typename AlphaType,
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int LhsStorageOrder = ((SparseLhsType::Flags&RowMajorBit)==RowMajorBit) ? RowMajor : ColMajor,
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bool ColPerCol = ((DenseRhsType::Flags&RowMajorBit)==0) || DenseRhsType::ColsAtCompileTime==1>
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struct sparse_time_dense_product_impl;
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template<typename SparseLhsType, typename DenseRhsType, typename DenseResType>
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struct sparse_time_dense_product_impl<SparseLhsType,DenseRhsType,DenseResType, typename DenseResType::Scalar, RowMajor, true>
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{
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typedef typename internal::remove_all<SparseLhsType>::type Lhs;
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typedef typename internal::remove_all<DenseRhsType>::type Rhs;
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typedef typename internal::remove_all<DenseResType>::type Res;
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typedef typename evaluator<Lhs>::InnerIterator LhsInnerIterator;
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typedef evaluator<Lhs> LhsEval;
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static void run(const SparseLhsType& lhs, const DenseRhsType& rhs, DenseResType& res, const typename Res::Scalar& alpha)
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{
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LhsEval lhsEval(lhs);
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Index n = lhs.outerSize();
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#ifdef EIGEN_HAS_OPENMP
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Eigen::initParallel();
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Index threads = Eigen::nbThreads();
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#endif
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for(Index c=0; c<rhs.cols(); ++c)
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{
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#ifdef EIGEN_HAS_OPENMP
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// This 20000 threshold has been found experimentally on 2D and 3D Poisson problems.
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// It basically represents the minimal amount of work to be done to be worth it.
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if(threads>1 && lhsEval.nonZerosEstimate() > 20000)
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{
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#pragma omp parallel for schedule(dynamic,(n+threads*4-1)/(threads*4)) num_threads(threads)
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for(Index i=0; i<n; ++i)
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processRow(lhsEval,rhs,res,alpha,i,c);
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}
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else
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#endif
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{
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for(Index i=0; i<n; ++i)
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processRow(lhsEval,rhs,res,alpha,i,c);
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}
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}
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}
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static void processRow(const LhsEval& lhsEval, const DenseRhsType& rhs, DenseResType& res, const typename Res::Scalar& alpha, Index i, Index col)
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{
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typename Res::Scalar tmp(0);
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for(LhsInnerIterator it(lhsEval,i); it ;++it)
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tmp += it.value() * rhs.coeff(it.index(),col);
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res.coeffRef(i,col) += alpha * tmp;
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}
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};
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// FIXME: what is the purpose of the following specialization? Is it for the BlockedSparse format?
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// -> let's disable it for now as it is conflicting with generic scalar*matrix and matrix*scalar operators
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// template<typename T1, typename T2/*, int _Options, typename _StrideType*/>
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// struct ScalarBinaryOpTraits<T1, Ref<T2/*, _Options, _StrideType*/> >
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// {
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// enum {
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// Defined = 1
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// };
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// typedef typename CwiseUnaryOp<scalar_multiple2_op<T1, typename T2::Scalar>, T2>::PlainObject ReturnType;
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// };
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template<typename SparseLhsType, typename DenseRhsType, typename DenseResType, typename AlphaType>
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struct sparse_time_dense_product_impl<SparseLhsType,DenseRhsType,DenseResType, AlphaType, ColMajor, true>
|
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{
|
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typedef typename internal::remove_all<SparseLhsType>::type Lhs;
|
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typedef typename internal::remove_all<DenseRhsType>::type Rhs;
|
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typedef typename internal::remove_all<DenseResType>::type Res;
|
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typedef evaluator<Lhs> LhsEval;
|
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typedef typename LhsEval::InnerIterator LhsInnerIterator;
|
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static void run(const SparseLhsType& lhs, const DenseRhsType& rhs, DenseResType& res, const AlphaType& alpha)
|
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{
|
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LhsEval lhsEval(lhs);
|
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for(Index c=0; c<rhs.cols(); ++c)
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{
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for(Index j=0; j<lhs.outerSize(); ++j)
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{
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// typename Res::Scalar rhs_j = alpha * rhs.coeff(j,c);
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typename ScalarBinaryOpTraits<AlphaType, typename Rhs::Scalar>::ReturnType rhs_j(alpha * rhs.coeff(j,c));
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for(LhsInnerIterator it(lhsEval,j); it ;++it)
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res.coeffRef(it.index(),c) += it.value() * rhs_j;
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}
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}
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}
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};
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|
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template<typename SparseLhsType, typename DenseRhsType, typename DenseResType>
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struct sparse_time_dense_product_impl<SparseLhsType,DenseRhsType,DenseResType, typename DenseResType::Scalar, RowMajor, false>
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{
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112
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typedef typename internal::remove_all<SparseLhsType>::type Lhs;
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typedef typename internal::remove_all<DenseRhsType>::type Rhs;
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typedef typename internal::remove_all<DenseResType>::type Res;
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typedef evaluator<Lhs> LhsEval;
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typedef typename LhsEval::InnerIterator LhsInnerIterator;
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static void run(const SparseLhsType& lhs, const DenseRhsType& rhs, DenseResType& res, const typename Res::Scalar& alpha)
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{
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Index n = lhs.rows();
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LhsEval lhsEval(lhs);
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|
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#ifdef EIGEN_HAS_OPENMP
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Eigen::initParallel();
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Index threads = Eigen::nbThreads();
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125
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// This 20000 threshold has been found experimentally on 2D and 3D Poisson problems.
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126
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// It basically represents the minimal amount of work to be done to be worth it.
|
127
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if(threads>1 && lhsEval.nonZerosEstimate()*rhs.cols() > 20000)
|
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{
|
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#pragma omp parallel for schedule(dynamic,(n+threads*4-1)/(threads*4)) num_threads(threads)
|
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for(Index i=0; i<n; ++i)
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processRow(lhsEval,rhs,res,alpha,i);
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}
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else
|
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#endif
|
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{
|
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for(Index i=0; i<n; ++i)
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processRow(lhsEval, rhs, res, alpha, i);
|
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|
+
}
|
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+
}
|
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+
|
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+
static void processRow(const LhsEval& lhsEval, const DenseRhsType& rhs, Res& res, const typename Res::Scalar& alpha, Index i)
|
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+
{
|
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+
typename Res::RowXpr res_i(res.row(i));
|
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+
for(LhsInnerIterator it(lhsEval,i); it ;++it)
|
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+
res_i += (alpha*it.value()) * rhs.row(it.index());
|
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+
}
|
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+
};
|
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+
|
149
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+
template<typename SparseLhsType, typename DenseRhsType, typename DenseResType>
|
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+
struct sparse_time_dense_product_impl<SparseLhsType,DenseRhsType,DenseResType, typename DenseResType::Scalar, ColMajor, false>
|
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|
+
{
|
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+
typedef typename internal::remove_all<SparseLhsType>::type Lhs;
|
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typedef typename internal::remove_all<DenseRhsType>::type Rhs;
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typedef typename internal::remove_all<DenseResType>::type Res;
|
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+
typedef typename evaluator<Lhs>::InnerIterator LhsInnerIterator;
|
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static void run(const SparseLhsType& lhs, const DenseRhsType& rhs, DenseResType& res, const typename Res::Scalar& alpha)
|
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+
{
|
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+
evaluator<Lhs> lhsEval(lhs);
|
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+
for(Index j=0; j<lhs.outerSize(); ++j)
|
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+
{
|
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+
typename Rhs::ConstRowXpr rhs_j(rhs.row(j));
|
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+
for(LhsInnerIterator it(lhsEval,j); it ;++it)
|
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|
+
res.row(it.index()) += (alpha*it.value()) * rhs_j;
|
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|
+
}
|
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|
+
}
|
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+
};
|
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+
|
168
|
+
template<typename SparseLhsType, typename DenseRhsType, typename DenseResType,typename AlphaType>
|
169
|
+
inline void sparse_time_dense_product(const SparseLhsType& lhs, const DenseRhsType& rhs, DenseResType& res, const AlphaType& alpha)
|
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|
+
{
|
171
|
+
sparse_time_dense_product_impl<SparseLhsType,DenseRhsType,DenseResType, AlphaType>::run(lhs, rhs, res, alpha);
|
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|
+
}
|
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+
|
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|
+
} // end namespace internal
|
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+
|
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|
+
namespace internal {
|
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+
|
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|
+
template<typename Lhs, typename Rhs, int ProductType>
|
179
|
+
struct generic_product_impl<Lhs, Rhs, SparseShape, DenseShape, ProductType>
|
180
|
+
: generic_product_impl_base<Lhs,Rhs,generic_product_impl<Lhs,Rhs,SparseShape,DenseShape,ProductType> >
|
181
|
+
{
|
182
|
+
typedef typename Product<Lhs,Rhs>::Scalar Scalar;
|
183
|
+
|
184
|
+
template<typename Dest>
|
185
|
+
static void scaleAndAddTo(Dest& dst, const Lhs& lhs, const Rhs& rhs, const Scalar& alpha)
|
186
|
+
{
|
187
|
+
typedef typename nested_eval<Lhs,((Rhs::Flags&RowMajorBit)==0) ? 1 : Rhs::ColsAtCompileTime>::type LhsNested;
|
188
|
+
typedef typename nested_eval<Rhs,((Lhs::Flags&RowMajorBit)==0) ? 1 : Dynamic>::type RhsNested;
|
189
|
+
LhsNested lhsNested(lhs);
|
190
|
+
RhsNested rhsNested(rhs);
|
191
|
+
internal::sparse_time_dense_product(lhsNested, rhsNested, dst, alpha);
|
192
|
+
}
|
193
|
+
};
|
194
|
+
|
195
|
+
template<typename Lhs, typename Rhs, int ProductType>
|
196
|
+
struct generic_product_impl<Lhs, Rhs, SparseTriangularShape, DenseShape, ProductType>
|
197
|
+
: generic_product_impl<Lhs, Rhs, SparseShape, DenseShape, ProductType>
|
198
|
+
{};
|
199
|
+
|
200
|
+
template<typename Lhs, typename Rhs, int ProductType>
|
201
|
+
struct generic_product_impl<Lhs, Rhs, DenseShape, SparseShape, ProductType>
|
202
|
+
: generic_product_impl_base<Lhs,Rhs,generic_product_impl<Lhs,Rhs,DenseShape,SparseShape,ProductType> >
|
203
|
+
{
|
204
|
+
typedef typename Product<Lhs,Rhs>::Scalar Scalar;
|
205
|
+
|
206
|
+
template<typename Dst>
|
207
|
+
static void scaleAndAddTo(Dst& dst, const Lhs& lhs, const Rhs& rhs, const Scalar& alpha)
|
208
|
+
{
|
209
|
+
typedef typename nested_eval<Lhs,((Rhs::Flags&RowMajorBit)==0) ? Dynamic : 1>::type LhsNested;
|
210
|
+
typedef typename nested_eval<Rhs,((Lhs::Flags&RowMajorBit)==RowMajorBit) ? 1 : Lhs::RowsAtCompileTime>::type RhsNested;
|
211
|
+
LhsNested lhsNested(lhs);
|
212
|
+
RhsNested rhsNested(rhs);
|
213
|
+
|
214
|
+
// transpose everything
|
215
|
+
Transpose<Dst> dstT(dst);
|
216
|
+
internal::sparse_time_dense_product(rhsNested.transpose(), lhsNested.transpose(), dstT, alpha);
|
217
|
+
}
|
218
|
+
};
|
219
|
+
|
220
|
+
template<typename Lhs, typename Rhs, int ProductType>
|
221
|
+
struct generic_product_impl<Lhs, Rhs, DenseShape, SparseTriangularShape, ProductType>
|
222
|
+
: generic_product_impl<Lhs, Rhs, DenseShape, SparseShape, ProductType>
|
223
|
+
{};
|
224
|
+
|
225
|
+
template<typename LhsT, typename RhsT, bool NeedToTranspose>
|
226
|
+
struct sparse_dense_outer_product_evaluator
|
227
|
+
{
|
228
|
+
protected:
|
229
|
+
typedef typename conditional<NeedToTranspose,RhsT,LhsT>::type Lhs1;
|
230
|
+
typedef typename conditional<NeedToTranspose,LhsT,RhsT>::type ActualRhs;
|
231
|
+
typedef Product<LhsT,RhsT,DefaultProduct> ProdXprType;
|
232
|
+
|
233
|
+
// if the actual left-hand side is a dense vector,
|
234
|
+
// then build a sparse-view so that we can seamlessly iterate over it.
|
235
|
+
typedef typename conditional<is_same<typename internal::traits<Lhs1>::StorageKind,Sparse>::value,
|
236
|
+
Lhs1, SparseView<Lhs1> >::type ActualLhs;
|
237
|
+
typedef typename conditional<is_same<typename internal::traits<Lhs1>::StorageKind,Sparse>::value,
|
238
|
+
Lhs1 const&, SparseView<Lhs1> >::type LhsArg;
|
239
|
+
|
240
|
+
typedef evaluator<ActualLhs> LhsEval;
|
241
|
+
typedef evaluator<ActualRhs> RhsEval;
|
242
|
+
typedef typename evaluator<ActualLhs>::InnerIterator LhsIterator;
|
243
|
+
typedef typename ProdXprType::Scalar Scalar;
|
244
|
+
|
245
|
+
public:
|
246
|
+
enum {
|
247
|
+
Flags = NeedToTranspose ? RowMajorBit : 0,
|
248
|
+
CoeffReadCost = HugeCost
|
249
|
+
};
|
250
|
+
|
251
|
+
class InnerIterator : public LhsIterator
|
252
|
+
{
|
253
|
+
public:
|
254
|
+
InnerIterator(const sparse_dense_outer_product_evaluator &xprEval, Index outer)
|
255
|
+
: LhsIterator(xprEval.m_lhsXprImpl, 0),
|
256
|
+
m_outer(outer),
|
257
|
+
m_empty(false),
|
258
|
+
m_factor(get(xprEval.m_rhsXprImpl, outer, typename internal::traits<ActualRhs>::StorageKind() ))
|
259
|
+
{}
|
260
|
+
|
261
|
+
EIGEN_STRONG_INLINE Index outer() const { return m_outer; }
|
262
|
+
EIGEN_STRONG_INLINE Index row() const { return NeedToTranspose ? m_outer : LhsIterator::index(); }
|
263
|
+
EIGEN_STRONG_INLINE Index col() const { return NeedToTranspose ? LhsIterator::index() : m_outer; }
|
264
|
+
|
265
|
+
EIGEN_STRONG_INLINE Scalar value() const { return LhsIterator::value() * m_factor; }
|
266
|
+
EIGEN_STRONG_INLINE operator bool() const { return LhsIterator::operator bool() && (!m_empty); }
|
267
|
+
|
268
|
+
protected:
|
269
|
+
Scalar get(const RhsEval &rhs, Index outer, Dense = Dense()) const
|
270
|
+
{
|
271
|
+
return rhs.coeff(outer);
|
272
|
+
}
|
273
|
+
|
274
|
+
Scalar get(const RhsEval &rhs, Index outer, Sparse = Sparse())
|
275
|
+
{
|
276
|
+
typename RhsEval::InnerIterator it(rhs, outer);
|
277
|
+
if (it && it.index()==0 && it.value()!=Scalar(0))
|
278
|
+
return it.value();
|
279
|
+
m_empty = true;
|
280
|
+
return Scalar(0);
|
281
|
+
}
|
282
|
+
|
283
|
+
Index m_outer;
|
284
|
+
bool m_empty;
|
285
|
+
Scalar m_factor;
|
286
|
+
};
|
287
|
+
|
288
|
+
sparse_dense_outer_product_evaluator(const Lhs1 &lhs, const ActualRhs &rhs)
|
289
|
+
: m_lhs(lhs), m_lhsXprImpl(m_lhs), m_rhsXprImpl(rhs)
|
290
|
+
{
|
291
|
+
EIGEN_INTERNAL_CHECK_COST_VALUE(CoeffReadCost);
|
292
|
+
}
|
293
|
+
|
294
|
+
// transpose case
|
295
|
+
sparse_dense_outer_product_evaluator(const ActualRhs &rhs, const Lhs1 &lhs)
|
296
|
+
: m_lhs(lhs), m_lhsXprImpl(m_lhs), m_rhsXprImpl(rhs)
|
297
|
+
{
|
298
|
+
EIGEN_INTERNAL_CHECK_COST_VALUE(CoeffReadCost);
|
299
|
+
}
|
300
|
+
|
301
|
+
protected:
|
302
|
+
const LhsArg m_lhs;
|
303
|
+
evaluator<ActualLhs> m_lhsXprImpl;
|
304
|
+
evaluator<ActualRhs> m_rhsXprImpl;
|
305
|
+
};
|
306
|
+
|
307
|
+
// sparse * dense outer product
|
308
|
+
template<typename Lhs, typename Rhs>
|
309
|
+
struct product_evaluator<Product<Lhs, Rhs, DefaultProduct>, OuterProduct, SparseShape, DenseShape>
|
310
|
+
: sparse_dense_outer_product_evaluator<Lhs,Rhs, Lhs::IsRowMajor>
|
311
|
+
{
|
312
|
+
typedef sparse_dense_outer_product_evaluator<Lhs,Rhs, Lhs::IsRowMajor> Base;
|
313
|
+
|
314
|
+
typedef Product<Lhs, Rhs> XprType;
|
315
|
+
typedef typename XprType::PlainObject PlainObject;
|
316
|
+
|
317
|
+
explicit product_evaluator(const XprType& xpr)
|
318
|
+
: Base(xpr.lhs(), xpr.rhs())
|
319
|
+
{}
|
320
|
+
|
321
|
+
};
|
322
|
+
|
323
|
+
template<typename Lhs, typename Rhs>
|
324
|
+
struct product_evaluator<Product<Lhs, Rhs, DefaultProduct>, OuterProduct, DenseShape, SparseShape>
|
325
|
+
: sparse_dense_outer_product_evaluator<Lhs,Rhs, Rhs::IsRowMajor>
|
326
|
+
{
|
327
|
+
typedef sparse_dense_outer_product_evaluator<Lhs,Rhs, Rhs::IsRowMajor> Base;
|
328
|
+
|
329
|
+
typedef Product<Lhs, Rhs> XprType;
|
330
|
+
typedef typename XprType::PlainObject PlainObject;
|
331
|
+
|
332
|
+
explicit product_evaluator(const XprType& xpr)
|
333
|
+
: Base(xpr.lhs(), xpr.rhs())
|
334
|
+
{}
|
335
|
+
|
336
|
+
};
|
337
|
+
|
338
|
+
} // end namespace internal
|
339
|
+
|
340
|
+
} // end namespace Eigen
|
341
|
+
|
342
|
+
#endif // EIGEN_SPARSEDENSEPRODUCT_H
|
@@ -0,0 +1,138 @@
|
|
1
|
+
// This file is part of Eigen, a lightweight C++ template library
|
2
|
+
// for linear algebra.
|
3
|
+
//
|
4
|
+
// Copyright (C) 2009-2015 Gael Guennebaud <gael.guennebaud@inria.fr>
|
5
|
+
//
|
6
|
+
// This Source Code Form is subject to the terms of the Mozilla
|
7
|
+
// Public License v. 2.0. If a copy of the MPL was not distributed
|
8
|
+
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
|
9
|
+
|
10
|
+
#ifndef EIGEN_SPARSE_DIAGONAL_PRODUCT_H
|
11
|
+
#define EIGEN_SPARSE_DIAGONAL_PRODUCT_H
|
12
|
+
|
13
|
+
namespace Eigen {
|
14
|
+
|
15
|
+
// The product of a diagonal matrix with a sparse matrix can be easily
|
16
|
+
// implemented using expression template.
|
17
|
+
// We have two consider very different cases:
|
18
|
+
// 1 - diag * row-major sparse
|
19
|
+
// => each inner vector <=> scalar * sparse vector product
|
20
|
+
// => so we can reuse CwiseUnaryOp::InnerIterator
|
21
|
+
// 2 - diag * col-major sparse
|
22
|
+
// => each inner vector <=> densevector * sparse vector cwise product
|
23
|
+
// => again, we can reuse specialization of CwiseBinaryOp::InnerIterator
|
24
|
+
// for that particular case
|
25
|
+
// The two other cases are symmetric.
|
26
|
+
|
27
|
+
namespace internal {
|
28
|
+
|
29
|
+
enum {
|
30
|
+
SDP_AsScalarProduct,
|
31
|
+
SDP_AsCwiseProduct
|
32
|
+
};
|
33
|
+
|
34
|
+
template<typename SparseXprType, typename DiagonalCoeffType, int SDP_Tag>
|
35
|
+
struct sparse_diagonal_product_evaluator;
|
36
|
+
|
37
|
+
template<typename Lhs, typename Rhs, int ProductTag>
|
38
|
+
struct product_evaluator<Product<Lhs, Rhs, DefaultProduct>, ProductTag, DiagonalShape, SparseShape>
|
39
|
+
: public sparse_diagonal_product_evaluator<Rhs, typename Lhs::DiagonalVectorType, Rhs::Flags&RowMajorBit?SDP_AsScalarProduct:SDP_AsCwiseProduct>
|
40
|
+
{
|
41
|
+
typedef Product<Lhs, Rhs, DefaultProduct> XprType;
|
42
|
+
enum { CoeffReadCost = HugeCost, Flags = Rhs::Flags&RowMajorBit, Alignment = 0 }; // FIXME CoeffReadCost & Flags
|
43
|
+
|
44
|
+
typedef sparse_diagonal_product_evaluator<Rhs, typename Lhs::DiagonalVectorType, Rhs::Flags&RowMajorBit?SDP_AsScalarProduct:SDP_AsCwiseProduct> Base;
|
45
|
+
explicit product_evaluator(const XprType& xpr) : Base(xpr.rhs(), xpr.lhs().diagonal()) {}
|
46
|
+
};
|
47
|
+
|
48
|
+
template<typename Lhs, typename Rhs, int ProductTag>
|
49
|
+
struct product_evaluator<Product<Lhs, Rhs, DefaultProduct>, ProductTag, SparseShape, DiagonalShape>
|
50
|
+
: public sparse_diagonal_product_evaluator<Lhs, Transpose<const typename Rhs::DiagonalVectorType>, Lhs::Flags&RowMajorBit?SDP_AsCwiseProduct:SDP_AsScalarProduct>
|
51
|
+
{
|
52
|
+
typedef Product<Lhs, Rhs, DefaultProduct> XprType;
|
53
|
+
enum { CoeffReadCost = HugeCost, Flags = Lhs::Flags&RowMajorBit, Alignment = 0 }; // FIXME CoeffReadCost & Flags
|
54
|
+
|
55
|
+
typedef sparse_diagonal_product_evaluator<Lhs, Transpose<const typename Rhs::DiagonalVectorType>, Lhs::Flags&RowMajorBit?SDP_AsCwiseProduct:SDP_AsScalarProduct> Base;
|
56
|
+
explicit product_evaluator(const XprType& xpr) : Base(xpr.lhs(), xpr.rhs().diagonal().transpose()) {}
|
57
|
+
};
|
58
|
+
|
59
|
+
template<typename SparseXprType, typename DiagonalCoeffType>
|
60
|
+
struct sparse_diagonal_product_evaluator<SparseXprType, DiagonalCoeffType, SDP_AsScalarProduct>
|
61
|
+
{
|
62
|
+
protected:
|
63
|
+
typedef typename evaluator<SparseXprType>::InnerIterator SparseXprInnerIterator;
|
64
|
+
typedef typename SparseXprType::Scalar Scalar;
|
65
|
+
|
66
|
+
public:
|
67
|
+
class InnerIterator : public SparseXprInnerIterator
|
68
|
+
{
|
69
|
+
public:
|
70
|
+
InnerIterator(const sparse_diagonal_product_evaluator &xprEval, Index outer)
|
71
|
+
: SparseXprInnerIterator(xprEval.m_sparseXprImpl, outer),
|
72
|
+
m_coeff(xprEval.m_diagCoeffImpl.coeff(outer))
|
73
|
+
{}
|
74
|
+
|
75
|
+
EIGEN_STRONG_INLINE Scalar value() const { return m_coeff * SparseXprInnerIterator::value(); }
|
76
|
+
protected:
|
77
|
+
typename DiagonalCoeffType::Scalar m_coeff;
|
78
|
+
};
|
79
|
+
|
80
|
+
sparse_diagonal_product_evaluator(const SparseXprType &sparseXpr, const DiagonalCoeffType &diagCoeff)
|
81
|
+
: m_sparseXprImpl(sparseXpr), m_diagCoeffImpl(diagCoeff)
|
82
|
+
{}
|
83
|
+
|
84
|
+
Index nonZerosEstimate() const { return m_sparseXprImpl.nonZerosEstimate(); }
|
85
|
+
|
86
|
+
protected:
|
87
|
+
evaluator<SparseXprType> m_sparseXprImpl;
|
88
|
+
evaluator<DiagonalCoeffType> m_diagCoeffImpl;
|
89
|
+
};
|
90
|
+
|
91
|
+
|
92
|
+
template<typename SparseXprType, typename DiagCoeffType>
|
93
|
+
struct sparse_diagonal_product_evaluator<SparseXprType, DiagCoeffType, SDP_AsCwiseProduct>
|
94
|
+
{
|
95
|
+
typedef typename SparseXprType::Scalar Scalar;
|
96
|
+
typedef typename SparseXprType::StorageIndex StorageIndex;
|
97
|
+
|
98
|
+
typedef typename nested_eval<DiagCoeffType,SparseXprType::IsRowMajor ? SparseXprType::RowsAtCompileTime
|
99
|
+
: SparseXprType::ColsAtCompileTime>::type DiagCoeffNested;
|
100
|
+
|
101
|
+
class InnerIterator
|
102
|
+
{
|
103
|
+
typedef typename evaluator<SparseXprType>::InnerIterator SparseXprIter;
|
104
|
+
public:
|
105
|
+
InnerIterator(const sparse_diagonal_product_evaluator &xprEval, Index outer)
|
106
|
+
: m_sparseIter(xprEval.m_sparseXprEval, outer), m_diagCoeffNested(xprEval.m_diagCoeffNested)
|
107
|
+
{}
|
108
|
+
|
109
|
+
inline Scalar value() const { return m_sparseIter.value() * m_diagCoeffNested.coeff(index()); }
|
110
|
+
inline StorageIndex index() const { return m_sparseIter.index(); }
|
111
|
+
inline Index outer() const { return m_sparseIter.outer(); }
|
112
|
+
inline Index col() const { return SparseXprType::IsRowMajor ? m_sparseIter.index() : m_sparseIter.outer(); }
|
113
|
+
inline Index row() const { return SparseXprType::IsRowMajor ? m_sparseIter.outer() : m_sparseIter.index(); }
|
114
|
+
|
115
|
+
EIGEN_STRONG_INLINE InnerIterator& operator++() { ++m_sparseIter; return *this; }
|
116
|
+
inline operator bool() const { return m_sparseIter; }
|
117
|
+
|
118
|
+
protected:
|
119
|
+
SparseXprIter m_sparseIter;
|
120
|
+
DiagCoeffNested m_diagCoeffNested;
|
121
|
+
};
|
122
|
+
|
123
|
+
sparse_diagonal_product_evaluator(const SparseXprType &sparseXpr, const DiagCoeffType &diagCoeff)
|
124
|
+
: m_sparseXprEval(sparseXpr), m_diagCoeffNested(diagCoeff)
|
125
|
+
{}
|
126
|
+
|
127
|
+
Index nonZerosEstimate() const { return m_sparseXprEval.nonZerosEstimate(); }
|
128
|
+
|
129
|
+
protected:
|
130
|
+
evaluator<SparseXprType> m_sparseXprEval;
|
131
|
+
DiagCoeffNested m_diagCoeffNested;
|
132
|
+
};
|
133
|
+
|
134
|
+
} // end namespace internal
|
135
|
+
|
136
|
+
} // end namespace Eigen
|
137
|
+
|
138
|
+
#endif // EIGEN_SPARSE_DIAGONAL_PRODUCT_H
|