umappp 0.1.2
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- checksums.yaml +7 -0
- data/LICENSE.txt +25 -0
- data/README.md +110 -0
- data/ext/umappp/extconf.rb +25 -0
- data/ext/umappp/numo.hpp +867 -0
- data/ext/umappp/umappp.cpp +225 -0
- data/lib/umappp/version.rb +5 -0
- data/lib/umappp.rb +41 -0
- data/vendor/Eigen/Cholesky +45 -0
- data/vendor/Eigen/CholmodSupport +48 -0
- data/vendor/Eigen/Core +384 -0
- data/vendor/Eigen/Dense +7 -0
- data/vendor/Eigen/Eigen +2 -0
- data/vendor/Eigen/Eigenvalues +60 -0
- data/vendor/Eigen/Geometry +59 -0
- data/vendor/Eigen/Householder +29 -0
- data/vendor/Eigen/IterativeLinearSolvers +48 -0
- data/vendor/Eigen/Jacobi +32 -0
- data/vendor/Eigen/KLUSupport +41 -0
- data/vendor/Eigen/LU +47 -0
- data/vendor/Eigen/MetisSupport +35 -0
- data/vendor/Eigen/OrderingMethods +70 -0
- data/vendor/Eigen/PaStiXSupport +49 -0
- data/vendor/Eigen/PardisoSupport +35 -0
- data/vendor/Eigen/QR +50 -0
- data/vendor/Eigen/QtAlignedMalloc +39 -0
- data/vendor/Eigen/SPQRSupport +34 -0
- data/vendor/Eigen/SVD +50 -0
- data/vendor/Eigen/Sparse +34 -0
- data/vendor/Eigen/SparseCholesky +37 -0
- data/vendor/Eigen/SparseCore +69 -0
- data/vendor/Eigen/SparseLU +50 -0
- data/vendor/Eigen/SparseQR +36 -0
- data/vendor/Eigen/StdDeque +27 -0
- data/vendor/Eigen/StdList +26 -0
- data/vendor/Eigen/StdVector +27 -0
- data/vendor/Eigen/SuperLUSupport +64 -0
- data/vendor/Eigen/UmfPackSupport +40 -0
- data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
- data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
- data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
- data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
- data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
- data/vendor/Eigen/src/Core/Array.h +417 -0
- data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
- data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
- data/vendor/Eigen/src/Core/Assign.h +90 -0
- data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
- data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
- data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
- data/vendor/Eigen/src/Core/Block.h +448 -0
- data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
- data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
- data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
- data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
- data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
- data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
- data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
- data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
- data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
- data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
- data/vendor/Eigen/src/Core/DenseBase.h +701 -0
- data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
- data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
- data/vendor/Eigen/src/Core/Diagonal.h +258 -0
- data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
- data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
- data/vendor/Eigen/src/Core/Dot.h +318 -0
- data/vendor/Eigen/src/Core/EigenBase.h +160 -0
- data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
- data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
- data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
- data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
- data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
- data/vendor/Eigen/src/Core/IO.h +258 -0
- data/vendor/Eigen/src/Core/IndexedView.h +237 -0
- data/vendor/Eigen/src/Core/Inverse.h +117 -0
- data/vendor/Eigen/src/Core/Map.h +171 -0
- data/vendor/Eigen/src/Core/MapBase.h +310 -0
- data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
- data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
- data/vendor/Eigen/src/Core/Matrix.h +565 -0
- data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
- data/vendor/Eigen/src/Core/NestByValue.h +85 -0
- data/vendor/Eigen/src/Core/NoAlias.h +109 -0
- data/vendor/Eigen/src/Core/NumTraits.h +335 -0
- data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
- data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
- data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
- data/vendor/Eigen/src/Core/Product.h +191 -0
- data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
- data/vendor/Eigen/src/Core/Random.h +218 -0
- data/vendor/Eigen/src/Core/Redux.h +515 -0
- data/vendor/Eigen/src/Core/Ref.h +381 -0
- data/vendor/Eigen/src/Core/Replicate.h +142 -0
- data/vendor/Eigen/src/Core/Reshaped.h +454 -0
- data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
- data/vendor/Eigen/src/Core/Reverse.h +217 -0
- data/vendor/Eigen/src/Core/Select.h +164 -0
- data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
- data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
- data/vendor/Eigen/src/Core/Solve.h +188 -0
- data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
- data/vendor/Eigen/src/Core/SolverBase.h +168 -0
- data/vendor/Eigen/src/Core/StableNorm.h +251 -0
- data/vendor/Eigen/src/Core/StlIterators.h +463 -0
- data/vendor/Eigen/src/Core/Stride.h +116 -0
- data/vendor/Eigen/src/Core/Swap.h +68 -0
- data/vendor/Eigen/src/Core/Transpose.h +464 -0
- data/vendor/Eigen/src/Core/Transpositions.h +386 -0
- data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
- data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
- data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
- data/vendor/Eigen/src/Core/Visitor.h +381 -0
- data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
- data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
- data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
- data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
- data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
- data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
- data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
- data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
- data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
- data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
- data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
- data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
- data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
- data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
- data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
- data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
- data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
- data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
- data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
- data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
- data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
- data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
- data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
- data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
- data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
- data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
- data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
- data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
- data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
- data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
- data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
- data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
- data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
- data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
- data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
- data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
- data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
- data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
- data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
- data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
- data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
- data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
- data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
- data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
- data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
- data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
- data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
- data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
- data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
- data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
- data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
- data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
- data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
- data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
- data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
- data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
- data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
- data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
- data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
- data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
- data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
- data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
- data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
- data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
- data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
- data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
- data/vendor/Eigen/src/Core/util/Constants.h +563 -0
- data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
- data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
- data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
- data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
- data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
- data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
- data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
- data/vendor/Eigen/src/Core/util/Meta.h +812 -0
- data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
- data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
- data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
- data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
- data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
- data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
- data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
- data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
- data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
- data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
- data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
- data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
- data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
- data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
- data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
- data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
- data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
- data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
- data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
- data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
- data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
- data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
- data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
- data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
- data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
- data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
- data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
- data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
- data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
- data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
- data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
- data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
- data/vendor/Eigen/src/Geometry/Translation.h +202 -0
- data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
- data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
- data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
- data/vendor/Eigen/src/Householder/Householder.h +176 -0
- data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
- data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
- data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
- data/vendor/Eigen/src/LU/Determinant.h +117 -0
- data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
- data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
- data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
- data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
- data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
- data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
- data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
- data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
- data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
- data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
- data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
- data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
- data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
- data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
- data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
- data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
- data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
- data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
- data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
- data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
- data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
- data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
- data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
- data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
- data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
- data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
- data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
- data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
- data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
- data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
- data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
- data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
- data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
- data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
- data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
- data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
- data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
- data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
- data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
- data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
- data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
- data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
- data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
- data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
- data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
- data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
- data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
- data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
- data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
- data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
- data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
- data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
- data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
- data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
- data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
- data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
- data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
- data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
- data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
- data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
- data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
- data/vendor/Eigen/src/StlSupport/details.h +84 -0
- data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
- data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
- data/vendor/Eigen/src/misc/Image.h +82 -0
- data/vendor/Eigen/src/misc/Kernel.h +79 -0
- data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
- data/vendor/Eigen/src/misc/blas.h +440 -0
- data/vendor/Eigen/src/misc/lapack.h +152 -0
- data/vendor/Eigen/src/misc/lapacke.h +16292 -0
- data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
- data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
- data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
- data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
- data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
- data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
- data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
- data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
- data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
- data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
- data/vendor/aarand/aarand.hpp +114 -0
- data/vendor/annoy/annoylib.h +1495 -0
- data/vendor/annoy/kissrandom.h +120 -0
- data/vendor/annoy/mman.h +242 -0
- data/vendor/hnswlib/bruteforce.h +152 -0
- data/vendor/hnswlib/hnswalg.h +1192 -0
- data/vendor/hnswlib/hnswlib.h +108 -0
- data/vendor/hnswlib/space_ip.h +282 -0
- data/vendor/hnswlib/space_l2.h +281 -0
- data/vendor/hnswlib/visited_list_pool.h +79 -0
- data/vendor/irlba/irlba.hpp +575 -0
- data/vendor/irlba/lanczos.hpp +212 -0
- data/vendor/irlba/parallel.hpp +474 -0
- data/vendor/irlba/utils.hpp +224 -0
- data/vendor/irlba/wrappers.hpp +228 -0
- data/vendor/kmeans/Base.hpp +75 -0
- data/vendor/kmeans/Details.hpp +79 -0
- data/vendor/kmeans/HartiganWong.hpp +492 -0
- data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
- data/vendor/kmeans/InitializeNone.hpp +44 -0
- data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
- data/vendor/kmeans/InitializeRandom.hpp +91 -0
- data/vendor/kmeans/Kmeans.hpp +161 -0
- data/vendor/kmeans/Lloyd.hpp +134 -0
- data/vendor/kmeans/MiniBatch.hpp +269 -0
- data/vendor/kmeans/QuickSearch.hpp +179 -0
- data/vendor/kmeans/compute_centroids.hpp +32 -0
- data/vendor/kmeans/compute_wcss.hpp +27 -0
- data/vendor/kmeans/is_edge_case.hpp +42 -0
- data/vendor/kmeans/random.hpp +55 -0
- data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
- data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
- data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
- data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
- data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
- data/vendor/knncolle/knncolle.hpp +34 -0
- data/vendor/knncolle/utils/Base.hpp +100 -0
- data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
- data/vendor/knncolle/utils/distances.hpp +98 -0
- data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
- data/vendor/powerit/PowerIterations.hpp +157 -0
- data/vendor/umappp/NeighborList.hpp +37 -0
- data/vendor/umappp/Umap.hpp +662 -0
- data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
- data/vendor/umappp/find_ab.hpp +157 -0
- data/vendor/umappp/neighbor_similarities.hpp +136 -0
- data/vendor/umappp/optimize_layout.hpp +285 -0
- data/vendor/umappp/spectral_init.hpp +181 -0
- data/vendor/umappp/umappp.hpp +13 -0
- metadata +465 -0
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// This file is part of Eigen, a lightweight C++ template library
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// for linear algebra.
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//
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// Copyright (C) 2008-2014 Gael Guennebaud <gael.guennebaud@inria.fr>
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//
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// This Source Code Form is subject to the terms of the Mozilla
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// Public License v. 2.0. If a copy of the MPL was not distributed
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// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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#ifndef EIGEN_SPARSEMATRIXBASE_H
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#define EIGEN_SPARSEMATRIXBASE_H
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namespace Eigen {
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/** \ingroup SparseCore_Module
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*
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* \class SparseMatrixBase
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*
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* \brief Base class of any sparse matrices or sparse expressions
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*
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* \tparam Derived is the derived type, e.g. a sparse matrix type, or an expression, etc.
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*
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* This class can be extended with the help of the plugin mechanism described on the page
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* \ref TopicCustomizing_Plugins by defining the preprocessor symbol \c EIGEN_SPARSEMATRIXBASE_PLUGIN.
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*/
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template<typename Derived> class SparseMatrixBase
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: public EigenBase<Derived>
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{
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public:
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typedef typename internal::traits<Derived>::Scalar Scalar;
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/** The numeric type of the expression' coefficients, e.g. float, double, int or std::complex<float>, etc.
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*
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* It is an alias for the Scalar type */
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typedef Scalar value_type;
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typedef typename internal::packet_traits<Scalar>::type PacketScalar;
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typedef typename internal::traits<Derived>::StorageKind StorageKind;
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/** The integer type used to \b store indices within a SparseMatrix.
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* For a \c SparseMatrix<Scalar,Options,IndexType> it an alias of the third template parameter \c IndexType. */
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typedef typename internal::traits<Derived>::StorageIndex StorageIndex;
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typedef typename internal::add_const_on_value_type_if_arithmetic<
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typename internal::packet_traits<Scalar>::type
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>::type PacketReturnType;
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typedef SparseMatrixBase StorageBaseType;
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typedef Matrix<StorageIndex,Dynamic,1> IndexVector;
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typedef Matrix<Scalar,Dynamic,1> ScalarVector;
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template<typename OtherDerived>
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Derived& operator=(const EigenBase<OtherDerived> &other);
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enum {
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RowsAtCompileTime = internal::traits<Derived>::RowsAtCompileTime,
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/**< The number of rows at compile-time. This is just a copy of the value provided
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* by the \a Derived type. If a value is not known at compile-time,
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* it is set to the \a Dynamic constant.
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* \sa MatrixBase::rows(), MatrixBase::cols(), ColsAtCompileTime, SizeAtCompileTime */
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ColsAtCompileTime = internal::traits<Derived>::ColsAtCompileTime,
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/**< The number of columns at compile-time. This is just a copy of the value provided
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* by the \a Derived type. If a value is not known at compile-time,
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* it is set to the \a Dynamic constant.
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* \sa MatrixBase::rows(), MatrixBase::cols(), RowsAtCompileTime, SizeAtCompileTime */
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SizeAtCompileTime = (internal::size_at_compile_time<internal::traits<Derived>::RowsAtCompileTime,
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internal::traits<Derived>::ColsAtCompileTime>::ret),
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/**< This is equal to the number of coefficients, i.e. the number of
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* rows times the number of columns, or to \a Dynamic if this is not
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* known at compile-time. \sa RowsAtCompileTime, ColsAtCompileTime */
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MaxRowsAtCompileTime = RowsAtCompileTime,
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MaxColsAtCompileTime = ColsAtCompileTime,
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MaxSizeAtCompileTime = (internal::size_at_compile_time<MaxRowsAtCompileTime,
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MaxColsAtCompileTime>::ret),
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IsVectorAtCompileTime = RowsAtCompileTime == 1 || ColsAtCompileTime == 1,
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/**< This is set to true if either the number of rows or the number of
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* columns is known at compile-time to be equal to 1. Indeed, in that case,
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* we are dealing with a column-vector (if there is only one column) or with
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* a row-vector (if there is only one row). */
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NumDimensions = int(MaxSizeAtCompileTime) == 1 ? 0 : bool(IsVectorAtCompileTime) ? 1 : 2,
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/**< This value is equal to Tensor::NumDimensions, i.e. 0 for scalars, 1 for vectors,
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* and 2 for matrices.
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*/
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Flags = internal::traits<Derived>::Flags,
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/**< This stores expression \ref flags flags which may or may not be inherited by new expressions
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* constructed from this one. See the \ref flags "list of flags".
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*/
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IsRowMajor = Flags&RowMajorBit ? 1 : 0,
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InnerSizeAtCompileTime = int(IsVectorAtCompileTime) ? int(SizeAtCompileTime)
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: int(IsRowMajor) ? int(ColsAtCompileTime) : int(RowsAtCompileTime),
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#ifndef EIGEN_PARSED_BY_DOXYGEN
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_HasDirectAccess = (int(Flags)&DirectAccessBit) ? 1 : 0 // workaround sunCC
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#endif
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};
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/** \internal the return type of MatrixBase::adjoint() */
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typedef typename internal::conditional<NumTraits<Scalar>::IsComplex,
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CwiseUnaryOp<internal::scalar_conjugate_op<Scalar>, Eigen::Transpose<const Derived> >,
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Transpose<const Derived>
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>::type AdjointReturnType;
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typedef Transpose<Derived> TransposeReturnType;
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typedef typename internal::add_const<Transpose<const Derived> >::type ConstTransposeReturnType;
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// FIXME storage order do not match evaluator storage order
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typedef SparseMatrix<Scalar, Flags&RowMajorBit ? RowMajor : ColMajor, StorageIndex> PlainObject;
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#ifndef EIGEN_PARSED_BY_DOXYGEN
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/** This is the "real scalar" type; if the \a Scalar type is already real numbers
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* (e.g. int, float or double) then \a RealScalar is just the same as \a Scalar. If
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* \a Scalar is \a std::complex<T> then RealScalar is \a T.
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*
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* \sa class NumTraits
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*/
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typedef typename NumTraits<Scalar>::Real RealScalar;
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/** \internal the return type of coeff()
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*/
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typedef typename internal::conditional<_HasDirectAccess, const Scalar&, Scalar>::type CoeffReturnType;
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/** \internal Represents a matrix with all coefficients equal to one another*/
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typedef CwiseNullaryOp<internal::scalar_constant_op<Scalar>,Matrix<Scalar,Dynamic,Dynamic> > ConstantReturnType;
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/** type of the equivalent dense matrix */
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typedef Matrix<Scalar,RowsAtCompileTime,ColsAtCompileTime> DenseMatrixType;
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/** type of the equivalent square matrix */
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typedef Matrix<Scalar,EIGEN_SIZE_MAX(RowsAtCompileTime,ColsAtCompileTime),
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EIGEN_SIZE_MAX(RowsAtCompileTime,ColsAtCompileTime)> SquareMatrixType;
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inline const Derived& derived() const { return *static_cast<const Derived*>(this); }
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inline Derived& derived() { return *static_cast<Derived*>(this); }
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inline Derived& const_cast_derived() const
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{ return *static_cast<Derived*>(const_cast<SparseMatrixBase*>(this)); }
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typedef EigenBase<Derived> Base;
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#endif // not EIGEN_PARSED_BY_DOXYGEN
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#define EIGEN_CURRENT_STORAGE_BASE_CLASS Eigen::SparseMatrixBase
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#ifdef EIGEN_PARSED_BY_DOXYGEN
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#define EIGEN_DOC_UNARY_ADDONS(METHOD,OP) /** <p>This method does not change the sparsity of \c *this: the OP is applied to explicitly stored coefficients only. \sa SparseCompressedBase::coeffs() </p> */
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#define EIGEN_DOC_BLOCK_ADDONS_NOT_INNER_PANEL /** <p> \warning This method returns a read-only expression for any sparse matrices. \sa \ref TutorialSparse_SubMatrices "Sparse block operations" </p> */
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#define EIGEN_DOC_BLOCK_ADDONS_INNER_PANEL_IF(COND) /** <p> \warning This method returns a read-write expression for COND sparse matrices only. Otherwise, the returned expression is read-only. \sa \ref TutorialSparse_SubMatrices "Sparse block operations" </p> */
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#else
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#define EIGEN_DOC_UNARY_ADDONS(X,Y)
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#define EIGEN_DOC_BLOCK_ADDONS_NOT_INNER_PANEL
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#define EIGEN_DOC_BLOCK_ADDONS_INNER_PANEL_IF(COND)
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#endif
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# include "../plugins/CommonCwiseUnaryOps.h"
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# include "../plugins/CommonCwiseBinaryOps.h"
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# include "../plugins/MatrixCwiseUnaryOps.h"
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# include "../plugins/MatrixCwiseBinaryOps.h"
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# include "../plugins/BlockMethods.h"
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# ifdef EIGEN_SPARSEMATRIXBASE_PLUGIN
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# include EIGEN_SPARSEMATRIXBASE_PLUGIN
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# endif
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#undef EIGEN_CURRENT_STORAGE_BASE_CLASS
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#undef EIGEN_DOC_UNARY_ADDONS
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#undef EIGEN_DOC_BLOCK_ADDONS_NOT_INNER_PANEL
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#undef EIGEN_DOC_BLOCK_ADDONS_INNER_PANEL_IF
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/** \returns the number of rows. \sa cols() */
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inline Index rows() const { return derived().rows(); }
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/** \returns the number of columns. \sa rows() */
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inline Index cols() const { return derived().cols(); }
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/** \returns the number of coefficients, which is \a rows()*cols().
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* \sa rows(), cols(). */
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inline Index size() const { return rows() * cols(); }
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/** \returns true if either the number of rows or the number of columns is equal to 1.
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* In other words, this function returns
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* \code rows()==1 || cols()==1 \endcode
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* \sa rows(), cols(), IsVectorAtCompileTime. */
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inline bool isVector() const { return rows()==1 || cols()==1; }
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/** \returns the size of the storage major dimension,
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* i.e., the number of columns for a columns major matrix, and the number of rows otherwise */
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Index outerSize() const { return (int(Flags)&RowMajorBit) ? this->rows() : this->cols(); }
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/** \returns the size of the inner dimension according to the storage order,
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* i.e., the number of rows for a columns major matrix, and the number of cols otherwise */
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Index innerSize() const { return (int(Flags)&RowMajorBit) ? this->cols() : this->rows(); }
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bool isRValue() const { return m_isRValue; }
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Derived& markAsRValue() { m_isRValue = true; return derived(); }
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SparseMatrixBase() : m_isRValue(false) { /* TODO check flags */ }
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template<typename OtherDerived>
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Derived& operator=(const ReturnByValue<OtherDerived>& other);
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template<typename OtherDerived>
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inline Derived& operator=(const SparseMatrixBase<OtherDerived>& other);
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inline Derived& operator=(const Derived& other);
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protected:
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template<typename OtherDerived>
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inline Derived& assign(const OtherDerived& other);
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template<typename OtherDerived>
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inline void assignGeneric(const OtherDerived& other);
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public:
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friend std::ostream & operator << (std::ostream & s, const SparseMatrixBase& m)
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{
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typedef typename Derived::Nested Nested;
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typedef typename internal::remove_all<Nested>::type NestedCleaned;
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if (Flags&RowMajorBit)
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{
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Nested nm(m.derived());
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internal::evaluator<NestedCleaned> thisEval(nm);
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for (Index row=0; row<nm.outerSize(); ++row)
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{
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Index col = 0;
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for (typename internal::evaluator<NestedCleaned>::InnerIterator it(thisEval, row); it; ++it)
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{
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for ( ; col<it.index(); ++col)
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s << "0 ";
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s << it.value() << " ";
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++col;
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}
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for ( ; col<m.cols(); ++col)
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s << "0 ";
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s << std::endl;
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}
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}
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else
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{
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Nested nm(m.derived());
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internal::evaluator<NestedCleaned> thisEval(nm);
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if (m.cols() == 1) {
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Index row = 0;
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for (typename internal::evaluator<NestedCleaned>::InnerIterator it(thisEval, 0); it; ++it)
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{
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for ( ; row<it.index(); ++row)
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s << "0" << std::endl;
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s << it.value() << std::endl;
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++row;
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}
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for ( ; row<m.rows(); ++row)
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s << "0" << std::endl;
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}
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else
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{
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SparseMatrix<Scalar, RowMajorBit, StorageIndex> trans = m;
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s << static_cast<const SparseMatrixBase<SparseMatrix<Scalar, RowMajorBit, StorageIndex> >&>(trans);
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}
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}
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return s;
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}
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template<typename OtherDerived>
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Derived& operator+=(const SparseMatrixBase<OtherDerived>& other);
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template<typename OtherDerived>
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Derived& operator-=(const SparseMatrixBase<OtherDerived>& other);
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template<typename OtherDerived>
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Derived& operator+=(const DiagonalBase<OtherDerived>& other);
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template<typename OtherDerived>
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Derived& operator-=(const DiagonalBase<OtherDerived>& other);
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template<typename OtherDerived>
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Derived& operator+=(const EigenBase<OtherDerived> &other);
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template<typename OtherDerived>
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Derived& operator-=(const EigenBase<OtherDerived> &other);
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Derived& operator*=(const Scalar& other);
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Derived& operator/=(const Scalar& other);
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template<typename OtherDerived> struct CwiseProductDenseReturnType {
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typedef CwiseBinaryOp<internal::scalar_product_op<typename ScalarBinaryOpTraits<
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typename internal::traits<Derived>::Scalar,
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typename internal::traits<OtherDerived>::Scalar
|
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>::ReturnType>,
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const Derived,
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const OtherDerived
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> Type;
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};
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template<typename OtherDerived>
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EIGEN_STRONG_INLINE const typename CwiseProductDenseReturnType<OtherDerived>::Type
|
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cwiseProduct(const MatrixBase<OtherDerived> &other) const;
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+
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// sparse * diagonal
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template<typename OtherDerived>
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const Product<Derived,OtherDerived>
|
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operator*(const DiagonalBase<OtherDerived> &other) const
|
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{ return Product<Derived,OtherDerived>(derived(), other.derived()); }
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+
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// diagonal * sparse
|
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template<typename OtherDerived> friend
|
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const Product<OtherDerived,Derived>
|
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|
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operator*(const DiagonalBase<OtherDerived> &lhs, const SparseMatrixBase& rhs)
|
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|
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{ return Product<OtherDerived,Derived>(lhs.derived(), rhs.derived()); }
|
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+
|
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// sparse * sparse
|
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template<typename OtherDerived>
|
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const Product<Derived,OtherDerived,AliasFreeProduct>
|
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operator*(const SparseMatrixBase<OtherDerived> &other) const;
|
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+
|
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// sparse * dense
|
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template<typename OtherDerived>
|
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const Product<Derived,OtherDerived>
|
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|
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operator*(const MatrixBase<OtherDerived> &other) const
|
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|
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{ return Product<Derived,OtherDerived>(derived(), other.derived()); }
|
321
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+
|
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+
// dense * sparse
|
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+
template<typename OtherDerived> friend
|
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|
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const Product<OtherDerived,Derived>
|
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|
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operator*(const MatrixBase<OtherDerived> &lhs, const SparseMatrixBase& rhs)
|
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|
+
{ return Product<OtherDerived,Derived>(lhs.derived(), rhs.derived()); }
|
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+
|
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|
+
/** \returns an expression of P H P^-1 where H is the matrix represented by \c *this */
|
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|
+
SparseSymmetricPermutationProduct<Derived,Upper|Lower> twistedBy(const PermutationMatrix<Dynamic,Dynamic,StorageIndex>& perm) const
|
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|
+
{
|
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+
return SparseSymmetricPermutationProduct<Derived,Upper|Lower>(derived(), perm);
|
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|
+
}
|
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|
+
|
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+
template<typename OtherDerived>
|
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|
+
Derived& operator*=(const SparseMatrixBase<OtherDerived>& other);
|
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+
|
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|
+
template<int Mode>
|
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|
+
inline const TriangularView<const Derived, Mode> triangularView() const;
|
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|
+
|
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|
+
template<unsigned int UpLo> struct SelfAdjointViewReturnType { typedef SparseSelfAdjointView<Derived, UpLo> Type; };
|
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|
+
template<unsigned int UpLo> struct ConstSelfAdjointViewReturnType { typedef const SparseSelfAdjointView<const Derived, UpLo> Type; };
|
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|
+
|
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|
+
template<unsigned int UpLo> inline
|
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|
+
typename ConstSelfAdjointViewReturnType<UpLo>::Type selfadjointView() const;
|
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|
+
template<unsigned int UpLo> inline
|
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|
+
typename SelfAdjointViewReturnType<UpLo>::Type selfadjointView();
|
347
|
+
|
348
|
+
template<typename OtherDerived> Scalar dot(const MatrixBase<OtherDerived>& other) const;
|
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|
+
template<typename OtherDerived> Scalar dot(const SparseMatrixBase<OtherDerived>& other) const;
|
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|
+
RealScalar squaredNorm() const;
|
351
|
+
RealScalar norm() const;
|
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|
+
RealScalar blueNorm() const;
|
353
|
+
|
354
|
+
TransposeReturnType transpose() { return TransposeReturnType(derived()); }
|
355
|
+
const ConstTransposeReturnType transpose() const { return ConstTransposeReturnType(derived()); }
|
356
|
+
const AdjointReturnType adjoint() const { return AdjointReturnType(transpose()); }
|
357
|
+
|
358
|
+
DenseMatrixType toDense() const
|
359
|
+
{
|
360
|
+
return DenseMatrixType(derived());
|
361
|
+
}
|
362
|
+
|
363
|
+
template<typename OtherDerived>
|
364
|
+
bool isApprox(const SparseMatrixBase<OtherDerived>& other,
|
365
|
+
const RealScalar& prec = NumTraits<Scalar>::dummy_precision()) const;
|
366
|
+
|
367
|
+
template<typename OtherDerived>
|
368
|
+
bool isApprox(const MatrixBase<OtherDerived>& other,
|
369
|
+
const RealScalar& prec = NumTraits<Scalar>::dummy_precision()) const
|
370
|
+
{ return toDense().isApprox(other,prec); }
|
371
|
+
|
372
|
+
/** \returns the matrix or vector obtained by evaluating this expression.
|
373
|
+
*
|
374
|
+
* Notice that in the case of a plain matrix or vector (not an expression) this function just returns
|
375
|
+
* a const reference, in order to avoid a useless copy.
|
376
|
+
*/
|
377
|
+
inline const typename internal::eval<Derived>::type eval() const
|
378
|
+
{ return typename internal::eval<Derived>::type(derived()); }
|
379
|
+
|
380
|
+
Scalar sum() const;
|
381
|
+
|
382
|
+
inline const SparseView<Derived>
|
383
|
+
pruned(const Scalar& reference = Scalar(0), const RealScalar& epsilon = NumTraits<Scalar>::dummy_precision()) const;
|
384
|
+
|
385
|
+
protected:
|
386
|
+
|
387
|
+
bool m_isRValue;
|
388
|
+
|
389
|
+
static inline StorageIndex convert_index(const Index idx) {
|
390
|
+
return internal::convert_index<StorageIndex>(idx);
|
391
|
+
}
|
392
|
+
private:
|
393
|
+
template<typename Dest> void evalTo(Dest &) const;
|
394
|
+
};
|
395
|
+
|
396
|
+
} // end namespace Eigen
|
397
|
+
|
398
|
+
#endif // EIGEN_SPARSEMATRIXBASE_H
|
@@ -0,0 +1,178 @@
|
|
1
|
+
// This file is part of Eigen, a lightweight C++ template library
|
2
|
+
// for linear algebra.
|
3
|
+
//
|
4
|
+
// Copyright (C) 2012 Gael Guennebaud <gael.guennebaud@inria.fr>
|
5
|
+
//
|
6
|
+
// This Source Code Form is subject to the terms of the Mozilla
|
7
|
+
// Public License v. 2.0. If a copy of the MPL was not distributed
|
8
|
+
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
|
9
|
+
|
10
|
+
#ifndef EIGEN_SPARSE_PERMUTATION_H
|
11
|
+
#define EIGEN_SPARSE_PERMUTATION_H
|
12
|
+
|
13
|
+
// This file implements sparse * permutation products
|
14
|
+
|
15
|
+
namespace Eigen {
|
16
|
+
|
17
|
+
namespace internal {
|
18
|
+
|
19
|
+
template<typename ExpressionType, int Side, bool Transposed>
|
20
|
+
struct permutation_matrix_product<ExpressionType, Side, Transposed, SparseShape>
|
21
|
+
{
|
22
|
+
typedef typename nested_eval<ExpressionType, 1>::type MatrixType;
|
23
|
+
typedef typename remove_all<MatrixType>::type MatrixTypeCleaned;
|
24
|
+
|
25
|
+
typedef typename MatrixTypeCleaned::Scalar Scalar;
|
26
|
+
typedef typename MatrixTypeCleaned::StorageIndex StorageIndex;
|
27
|
+
|
28
|
+
enum {
|
29
|
+
SrcStorageOrder = MatrixTypeCleaned::Flags&RowMajorBit ? RowMajor : ColMajor,
|
30
|
+
MoveOuter = SrcStorageOrder==RowMajor ? Side==OnTheLeft : Side==OnTheRight
|
31
|
+
};
|
32
|
+
|
33
|
+
typedef typename internal::conditional<MoveOuter,
|
34
|
+
SparseMatrix<Scalar,SrcStorageOrder,StorageIndex>,
|
35
|
+
SparseMatrix<Scalar,int(SrcStorageOrder)==RowMajor?ColMajor:RowMajor,StorageIndex> >::type ReturnType;
|
36
|
+
|
37
|
+
template<typename Dest,typename PermutationType>
|
38
|
+
static inline void run(Dest& dst, const PermutationType& perm, const ExpressionType& xpr)
|
39
|
+
{
|
40
|
+
MatrixType mat(xpr);
|
41
|
+
if(MoveOuter)
|
42
|
+
{
|
43
|
+
SparseMatrix<Scalar,SrcStorageOrder,StorageIndex> tmp(mat.rows(), mat.cols());
|
44
|
+
Matrix<StorageIndex,Dynamic,1> sizes(mat.outerSize());
|
45
|
+
for(Index j=0; j<mat.outerSize(); ++j)
|
46
|
+
{
|
47
|
+
Index jp = perm.indices().coeff(j);
|
48
|
+
sizes[((Side==OnTheLeft) ^ Transposed) ? jp : j] = StorageIndex(mat.innerVector(((Side==OnTheRight) ^ Transposed) ? jp : j).nonZeros());
|
49
|
+
}
|
50
|
+
tmp.reserve(sizes);
|
51
|
+
for(Index j=0; j<mat.outerSize(); ++j)
|
52
|
+
{
|
53
|
+
Index jp = perm.indices().coeff(j);
|
54
|
+
Index jsrc = ((Side==OnTheRight) ^ Transposed) ? jp : j;
|
55
|
+
Index jdst = ((Side==OnTheLeft) ^ Transposed) ? jp : j;
|
56
|
+
for(typename MatrixTypeCleaned::InnerIterator it(mat,jsrc); it; ++it)
|
57
|
+
tmp.insertByOuterInner(jdst,it.index()) = it.value();
|
58
|
+
}
|
59
|
+
dst = tmp;
|
60
|
+
}
|
61
|
+
else
|
62
|
+
{
|
63
|
+
SparseMatrix<Scalar,int(SrcStorageOrder)==RowMajor?ColMajor:RowMajor,StorageIndex> tmp(mat.rows(), mat.cols());
|
64
|
+
Matrix<StorageIndex,Dynamic,1> sizes(tmp.outerSize());
|
65
|
+
sizes.setZero();
|
66
|
+
PermutationMatrix<Dynamic,Dynamic,StorageIndex> perm_cpy;
|
67
|
+
if((Side==OnTheLeft) ^ Transposed)
|
68
|
+
perm_cpy = perm;
|
69
|
+
else
|
70
|
+
perm_cpy = perm.transpose();
|
71
|
+
|
72
|
+
for(Index j=0; j<mat.outerSize(); ++j)
|
73
|
+
for(typename MatrixTypeCleaned::InnerIterator it(mat,j); it; ++it)
|
74
|
+
sizes[perm_cpy.indices().coeff(it.index())]++;
|
75
|
+
tmp.reserve(sizes);
|
76
|
+
for(Index j=0; j<mat.outerSize(); ++j)
|
77
|
+
for(typename MatrixTypeCleaned::InnerIterator it(mat,j); it; ++it)
|
78
|
+
tmp.insertByOuterInner(perm_cpy.indices().coeff(it.index()),j) = it.value();
|
79
|
+
dst = tmp;
|
80
|
+
}
|
81
|
+
}
|
82
|
+
};
|
83
|
+
|
84
|
+
}
|
85
|
+
|
86
|
+
namespace internal {
|
87
|
+
|
88
|
+
template <int ProductTag> struct product_promote_storage_type<Sparse, PermutationStorage, ProductTag> { typedef Sparse ret; };
|
89
|
+
template <int ProductTag> struct product_promote_storage_type<PermutationStorage, Sparse, ProductTag> { typedef Sparse ret; };
|
90
|
+
|
91
|
+
// TODO, the following two overloads are only needed to define the right temporary type through
|
92
|
+
// typename traits<permutation_sparse_matrix_product<Rhs,Lhs,OnTheRight,false> >::ReturnType
|
93
|
+
// whereas it should be correctly handled by traits<Product<> >::PlainObject
|
94
|
+
|
95
|
+
template<typename Lhs, typename Rhs, int ProductTag>
|
96
|
+
struct product_evaluator<Product<Lhs, Rhs, AliasFreeProduct>, ProductTag, PermutationShape, SparseShape>
|
97
|
+
: public evaluator<typename permutation_matrix_product<Rhs,OnTheLeft,false,SparseShape>::ReturnType>
|
98
|
+
{
|
99
|
+
typedef Product<Lhs, Rhs, AliasFreeProduct> XprType;
|
100
|
+
typedef typename permutation_matrix_product<Rhs,OnTheLeft,false,SparseShape>::ReturnType PlainObject;
|
101
|
+
typedef evaluator<PlainObject> Base;
|
102
|
+
|
103
|
+
enum {
|
104
|
+
Flags = Base::Flags | EvalBeforeNestingBit
|
105
|
+
};
|
106
|
+
|
107
|
+
explicit product_evaluator(const XprType& xpr)
|
108
|
+
: m_result(xpr.rows(), xpr.cols())
|
109
|
+
{
|
110
|
+
::new (static_cast<Base*>(this)) Base(m_result);
|
111
|
+
generic_product_impl<Lhs, Rhs, PermutationShape, SparseShape, ProductTag>::evalTo(m_result, xpr.lhs(), xpr.rhs());
|
112
|
+
}
|
113
|
+
|
114
|
+
protected:
|
115
|
+
PlainObject m_result;
|
116
|
+
};
|
117
|
+
|
118
|
+
template<typename Lhs, typename Rhs, int ProductTag>
|
119
|
+
struct product_evaluator<Product<Lhs, Rhs, AliasFreeProduct>, ProductTag, SparseShape, PermutationShape >
|
120
|
+
: public evaluator<typename permutation_matrix_product<Lhs,OnTheRight,false,SparseShape>::ReturnType>
|
121
|
+
{
|
122
|
+
typedef Product<Lhs, Rhs, AliasFreeProduct> XprType;
|
123
|
+
typedef typename permutation_matrix_product<Lhs,OnTheRight,false,SparseShape>::ReturnType PlainObject;
|
124
|
+
typedef evaluator<PlainObject> Base;
|
125
|
+
|
126
|
+
enum {
|
127
|
+
Flags = Base::Flags | EvalBeforeNestingBit
|
128
|
+
};
|
129
|
+
|
130
|
+
explicit product_evaluator(const XprType& xpr)
|
131
|
+
: m_result(xpr.rows(), xpr.cols())
|
132
|
+
{
|
133
|
+
::new (static_cast<Base*>(this)) Base(m_result);
|
134
|
+
generic_product_impl<Lhs, Rhs, SparseShape, PermutationShape, ProductTag>::evalTo(m_result, xpr.lhs(), xpr.rhs());
|
135
|
+
}
|
136
|
+
|
137
|
+
protected:
|
138
|
+
PlainObject m_result;
|
139
|
+
};
|
140
|
+
|
141
|
+
} // end namespace internal
|
142
|
+
|
143
|
+
/** \returns the matrix with the permutation applied to the columns
|
144
|
+
*/
|
145
|
+
template<typename SparseDerived, typename PermDerived>
|
146
|
+
inline const Product<SparseDerived, PermDerived, AliasFreeProduct>
|
147
|
+
operator*(const SparseMatrixBase<SparseDerived>& matrix, const PermutationBase<PermDerived>& perm)
|
148
|
+
{ return Product<SparseDerived, PermDerived, AliasFreeProduct>(matrix.derived(), perm.derived()); }
|
149
|
+
|
150
|
+
/** \returns the matrix with the permutation applied to the rows
|
151
|
+
*/
|
152
|
+
template<typename SparseDerived, typename PermDerived>
|
153
|
+
inline const Product<PermDerived, SparseDerived, AliasFreeProduct>
|
154
|
+
operator*( const PermutationBase<PermDerived>& perm, const SparseMatrixBase<SparseDerived>& matrix)
|
155
|
+
{ return Product<PermDerived, SparseDerived, AliasFreeProduct>(perm.derived(), matrix.derived()); }
|
156
|
+
|
157
|
+
|
158
|
+
/** \returns the matrix with the inverse permutation applied to the columns.
|
159
|
+
*/
|
160
|
+
template<typename SparseDerived, typename PermutationType>
|
161
|
+
inline const Product<SparseDerived, Inverse<PermutationType>, AliasFreeProduct>
|
162
|
+
operator*(const SparseMatrixBase<SparseDerived>& matrix, const InverseImpl<PermutationType, PermutationStorage>& tperm)
|
163
|
+
{
|
164
|
+
return Product<SparseDerived, Inverse<PermutationType>, AliasFreeProduct>(matrix.derived(), tperm.derived());
|
165
|
+
}
|
166
|
+
|
167
|
+
/** \returns the matrix with the inverse permutation applied to the rows.
|
168
|
+
*/
|
169
|
+
template<typename SparseDerived, typename PermutationType>
|
170
|
+
inline const Product<Inverse<PermutationType>, SparseDerived, AliasFreeProduct>
|
171
|
+
operator*(const InverseImpl<PermutationType,PermutationStorage>& tperm, const SparseMatrixBase<SparseDerived>& matrix)
|
172
|
+
{
|
173
|
+
return Product<Inverse<PermutationType>, SparseDerived, AliasFreeProduct>(tperm.derived(), matrix.derived());
|
174
|
+
}
|
175
|
+
|
176
|
+
} // end namespace Eigen
|
177
|
+
|
178
|
+
#endif // EIGEN_SPARSE_SELFADJOINTVIEW_H
|