umappp 0.1.2

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Files changed (395) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +25 -0
  3. data/README.md +110 -0
  4. data/ext/umappp/extconf.rb +25 -0
  5. data/ext/umappp/numo.hpp +867 -0
  6. data/ext/umappp/umappp.cpp +225 -0
  7. data/lib/umappp/version.rb +5 -0
  8. data/lib/umappp.rb +41 -0
  9. data/vendor/Eigen/Cholesky +45 -0
  10. data/vendor/Eigen/CholmodSupport +48 -0
  11. data/vendor/Eigen/Core +384 -0
  12. data/vendor/Eigen/Dense +7 -0
  13. data/vendor/Eigen/Eigen +2 -0
  14. data/vendor/Eigen/Eigenvalues +60 -0
  15. data/vendor/Eigen/Geometry +59 -0
  16. data/vendor/Eigen/Householder +29 -0
  17. data/vendor/Eigen/IterativeLinearSolvers +48 -0
  18. data/vendor/Eigen/Jacobi +32 -0
  19. data/vendor/Eigen/KLUSupport +41 -0
  20. data/vendor/Eigen/LU +47 -0
  21. data/vendor/Eigen/MetisSupport +35 -0
  22. data/vendor/Eigen/OrderingMethods +70 -0
  23. data/vendor/Eigen/PaStiXSupport +49 -0
  24. data/vendor/Eigen/PardisoSupport +35 -0
  25. data/vendor/Eigen/QR +50 -0
  26. data/vendor/Eigen/QtAlignedMalloc +39 -0
  27. data/vendor/Eigen/SPQRSupport +34 -0
  28. data/vendor/Eigen/SVD +50 -0
  29. data/vendor/Eigen/Sparse +34 -0
  30. data/vendor/Eigen/SparseCholesky +37 -0
  31. data/vendor/Eigen/SparseCore +69 -0
  32. data/vendor/Eigen/SparseLU +50 -0
  33. data/vendor/Eigen/SparseQR +36 -0
  34. data/vendor/Eigen/StdDeque +27 -0
  35. data/vendor/Eigen/StdList +26 -0
  36. data/vendor/Eigen/StdVector +27 -0
  37. data/vendor/Eigen/SuperLUSupport +64 -0
  38. data/vendor/Eigen/UmfPackSupport +40 -0
  39. data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
  40. data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
  41. data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  42. data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
  43. data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
  44. data/vendor/Eigen/src/Core/Array.h +417 -0
  45. data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
  46. data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
  47. data/vendor/Eigen/src/Core/Assign.h +90 -0
  48. data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
  49. data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
  50. data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
  51. data/vendor/Eigen/src/Core/Block.h +448 -0
  52. data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
  53. data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
  54. data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
  55. data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
  56. data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
  57. data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
  58. data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
  59. data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  60. data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  61. data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
  62. data/vendor/Eigen/src/Core/DenseBase.h +701 -0
  63. data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
  64. data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
  65. data/vendor/Eigen/src/Core/Diagonal.h +258 -0
  66. data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
  67. data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
  68. data/vendor/Eigen/src/Core/Dot.h +318 -0
  69. data/vendor/Eigen/src/Core/EigenBase.h +160 -0
  70. data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
  71. data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
  72. data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
  73. data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
  74. data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
  75. data/vendor/Eigen/src/Core/IO.h +258 -0
  76. data/vendor/Eigen/src/Core/IndexedView.h +237 -0
  77. data/vendor/Eigen/src/Core/Inverse.h +117 -0
  78. data/vendor/Eigen/src/Core/Map.h +171 -0
  79. data/vendor/Eigen/src/Core/MapBase.h +310 -0
  80. data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
  81. data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
  82. data/vendor/Eigen/src/Core/Matrix.h +565 -0
  83. data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
  84. data/vendor/Eigen/src/Core/NestByValue.h +85 -0
  85. data/vendor/Eigen/src/Core/NoAlias.h +109 -0
  86. data/vendor/Eigen/src/Core/NumTraits.h +335 -0
  87. data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  88. data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
  89. data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
  90. data/vendor/Eigen/src/Core/Product.h +191 -0
  91. data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
  92. data/vendor/Eigen/src/Core/Random.h +218 -0
  93. data/vendor/Eigen/src/Core/Redux.h +515 -0
  94. data/vendor/Eigen/src/Core/Ref.h +381 -0
  95. data/vendor/Eigen/src/Core/Replicate.h +142 -0
  96. data/vendor/Eigen/src/Core/Reshaped.h +454 -0
  97. data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
  98. data/vendor/Eigen/src/Core/Reverse.h +217 -0
  99. data/vendor/Eigen/src/Core/Select.h +164 -0
  100. data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
  101. data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  102. data/vendor/Eigen/src/Core/Solve.h +188 -0
  103. data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
  104. data/vendor/Eigen/src/Core/SolverBase.h +168 -0
  105. data/vendor/Eigen/src/Core/StableNorm.h +251 -0
  106. data/vendor/Eigen/src/Core/StlIterators.h +463 -0
  107. data/vendor/Eigen/src/Core/Stride.h +116 -0
  108. data/vendor/Eigen/src/Core/Swap.h +68 -0
  109. data/vendor/Eigen/src/Core/Transpose.h +464 -0
  110. data/vendor/Eigen/src/Core/Transpositions.h +386 -0
  111. data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
  112. data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
  113. data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
  114. data/vendor/Eigen/src/Core/Visitor.h +381 -0
  115. data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
  116. data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
  117. data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
  118. data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
  119. data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  120. data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
  121. data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
  122. data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  123. data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
  124. data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
  125. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  126. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  127. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  128. data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
  129. data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
  130. data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  131. data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
  132. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  133. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  134. data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
  135. data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
  136. data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  137. data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
  138. data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  139. data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  140. data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  141. data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  142. data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  143. data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  144. data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
  145. data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  146. data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
  147. data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
  148. data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  149. data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
  150. data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
  151. data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
  152. data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
  153. data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  154. data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  155. data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  156. data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  157. data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  158. data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  159. data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  160. data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  161. data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
  162. data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
  163. data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
  164. data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
  165. data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
  166. data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
  167. data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
  168. data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  169. data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
  170. data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
  171. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
  172. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
  173. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  174. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
  175. data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
  176. data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  177. data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
  178. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
  179. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
  180. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
  181. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  182. data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  183. data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
  184. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
  185. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
  186. data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  187. data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  188. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
  189. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
  190. data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
  191. data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
  192. data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  193. data/vendor/Eigen/src/Core/util/Constants.h +563 -0
  194. data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
  195. data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
  196. data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  197. data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
  198. data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
  199. data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
  200. data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
  201. data/vendor/Eigen/src/Core/util/Meta.h +812 -0
  202. data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
  203. data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
  204. data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  205. data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
  206. data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  207. data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
  208. data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  209. data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
  210. data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  211. data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  212. data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  213. data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  214. data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  215. data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  216. data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
  217. data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
  218. data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  219. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
  220. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  221. data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
  222. data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
  223. data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
  224. data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
  225. data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
  226. data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
  227. data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
  228. data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
  229. data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
  230. data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
  231. data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
  232. data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
  233. data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
  234. data/vendor/Eigen/src/Geometry/Translation.h +202 -0
  235. data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
  236. data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  237. data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
  238. data/vendor/Eigen/src/Householder/Householder.h +176 -0
  239. data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
  240. data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  241. data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
  242. data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
  243. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
  244. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
  245. data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
  246. data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
  247. data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
  248. data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
  249. data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  250. data/vendor/Eigen/src/LU/Determinant.h +117 -0
  251. data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
  252. data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
  253. data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
  254. data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  255. data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
  256. data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  257. data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
  258. data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
  259. data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
  260. data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  261. data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
  262. data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
  263. data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  264. data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
  265. data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
  266. data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
  267. data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  268. data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
  269. data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
  270. data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
  271. data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  272. data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
  273. data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  274. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
  275. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
  276. data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
  277. data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
  278. data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  279. data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  280. data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
  281. data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
  282. data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  283. data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
  284. data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
  285. data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
  286. data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
  287. data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  288. data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
  289. data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  290. data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
  291. data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
  292. data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
  293. data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  294. data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
  295. data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
  296. data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
  297. data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
  298. data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  299. data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  300. data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  301. data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  302. data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
  303. data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
  304. data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
  305. data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  306. data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
  307. data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  308. data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  309. data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  310. data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
  311. data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  312. data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  313. data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  314. data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  315. data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  316. data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  317. data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  318. data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  319. data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  320. data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  321. data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  322. data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  323. data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
  324. data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
  325. data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
  326. data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
  327. data/vendor/Eigen/src/StlSupport/details.h +84 -0
  328. data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
  329. data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
  330. data/vendor/Eigen/src/misc/Image.h +82 -0
  331. data/vendor/Eigen/src/misc/Kernel.h +79 -0
  332. data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
  333. data/vendor/Eigen/src/misc/blas.h +440 -0
  334. data/vendor/Eigen/src/misc/lapack.h +152 -0
  335. data/vendor/Eigen/src/misc/lapacke.h +16292 -0
  336. data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
  337. data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
  338. data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
  339. data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
  340. data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  341. data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
  342. data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  343. data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  344. data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
  345. data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
  346. data/vendor/aarand/aarand.hpp +114 -0
  347. data/vendor/annoy/annoylib.h +1495 -0
  348. data/vendor/annoy/kissrandom.h +120 -0
  349. data/vendor/annoy/mman.h +242 -0
  350. data/vendor/hnswlib/bruteforce.h +152 -0
  351. data/vendor/hnswlib/hnswalg.h +1192 -0
  352. data/vendor/hnswlib/hnswlib.h +108 -0
  353. data/vendor/hnswlib/space_ip.h +282 -0
  354. data/vendor/hnswlib/space_l2.h +281 -0
  355. data/vendor/hnswlib/visited_list_pool.h +79 -0
  356. data/vendor/irlba/irlba.hpp +575 -0
  357. data/vendor/irlba/lanczos.hpp +212 -0
  358. data/vendor/irlba/parallel.hpp +474 -0
  359. data/vendor/irlba/utils.hpp +224 -0
  360. data/vendor/irlba/wrappers.hpp +228 -0
  361. data/vendor/kmeans/Base.hpp +75 -0
  362. data/vendor/kmeans/Details.hpp +79 -0
  363. data/vendor/kmeans/HartiganWong.hpp +492 -0
  364. data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
  365. data/vendor/kmeans/InitializeNone.hpp +44 -0
  366. data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
  367. data/vendor/kmeans/InitializeRandom.hpp +91 -0
  368. data/vendor/kmeans/Kmeans.hpp +161 -0
  369. data/vendor/kmeans/Lloyd.hpp +134 -0
  370. data/vendor/kmeans/MiniBatch.hpp +269 -0
  371. data/vendor/kmeans/QuickSearch.hpp +179 -0
  372. data/vendor/kmeans/compute_centroids.hpp +32 -0
  373. data/vendor/kmeans/compute_wcss.hpp +27 -0
  374. data/vendor/kmeans/is_edge_case.hpp +42 -0
  375. data/vendor/kmeans/random.hpp +55 -0
  376. data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
  377. data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
  378. data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
  379. data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
  380. data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
  381. data/vendor/knncolle/knncolle.hpp +34 -0
  382. data/vendor/knncolle/utils/Base.hpp +100 -0
  383. data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
  384. data/vendor/knncolle/utils/distances.hpp +98 -0
  385. data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
  386. data/vendor/powerit/PowerIterations.hpp +157 -0
  387. data/vendor/umappp/NeighborList.hpp +37 -0
  388. data/vendor/umappp/Umap.hpp +662 -0
  389. data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
  390. data/vendor/umappp/find_ab.hpp +157 -0
  391. data/vendor/umappp/neighbor_similarities.hpp +136 -0
  392. data/vendor/umappp/optimize_layout.hpp +285 -0
  393. data/vendor/umappp/spectral_init.hpp +181 -0
  394. data/vendor/umappp/umappp.hpp +13 -0
  395. metadata +465 -0
@@ -0,0 +1,657 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2012 Alexey Korepanov <kaikaikai@yandex.ru>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_REAL_QZ_H
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+ #define EIGEN_REAL_QZ_H
12
+
13
+ namespace Eigen {
14
+
15
+ /** \eigenvalues_module \ingroup Eigenvalues_Module
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+ *
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+ *
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+ * \class RealQZ
19
+ *
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+ * \brief Performs a real QZ decomposition of a pair of square matrices
21
+ *
22
+ * \tparam _MatrixType the type of the matrix of which we are computing the
23
+ * real QZ decomposition; this is expected to be an instantiation of the
24
+ * Matrix class template.
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+ *
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+ * Given a real square matrices A and B, this class computes the real QZ
27
+ * decomposition: \f$ A = Q S Z \f$, \f$ B = Q T Z \f$ where Q and Z are
28
+ * real orthogonal matrixes, T is upper-triangular matrix, and S is upper
29
+ * quasi-triangular matrix. An orthogonal matrix is a matrix whose
30
+ * inverse is equal to its transpose, \f$ U^{-1} = U^T \f$. A quasi-triangular
31
+ * matrix is a block-triangular matrix whose diagonal consists of 1-by-1
32
+ * blocks and 2-by-2 blocks where further reduction is impossible due to
33
+ * complex eigenvalues.
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+ *
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+ * The eigenvalues of the pencil \f$ A - z B \f$ can be obtained from
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+ * 1x1 and 2x2 blocks on the diagonals of S and T.
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+ *
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+ * Call the function compute() to compute the real QZ decomposition of a
39
+ * given pair of matrices. Alternatively, you can use the
40
+ * RealQZ(const MatrixType& B, const MatrixType& B, bool computeQZ)
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+ * constructor which computes the real QZ decomposition at construction
42
+ * time. Once the decomposition is computed, you can use the matrixS(),
43
+ * matrixT(), matrixQ() and matrixZ() functions to retrieve the matrices
44
+ * S, T, Q and Z in the decomposition. If computeQZ==false, some time
45
+ * is saved by not computing matrices Q and Z.
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+ *
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+ * Example: \include RealQZ_compute.cpp
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+ * Output: \include RealQZ_compute.out
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+ *
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+ * \note The implementation is based on the algorithm in "Matrix Computations"
51
+ * by Gene H. Golub and Charles F. Van Loan, and a paper "An algorithm for
52
+ * generalized eigenvalue problems" by C.B.Moler and G.W.Stewart.
53
+ *
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+ * \sa class RealSchur, class ComplexSchur, class EigenSolver, class ComplexEigenSolver
55
+ */
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+
57
+ template<typename _MatrixType> class RealQZ
58
+ {
59
+ public:
60
+ typedef _MatrixType MatrixType;
61
+ enum {
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+ RowsAtCompileTime = MatrixType::RowsAtCompileTime,
63
+ ColsAtCompileTime = MatrixType::ColsAtCompileTime,
64
+ Options = MatrixType::Options,
65
+ MaxRowsAtCompileTime = MatrixType::MaxRowsAtCompileTime,
66
+ MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime
67
+ };
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+ typedef typename MatrixType::Scalar Scalar;
69
+ typedef std::complex<typename NumTraits<Scalar>::Real> ComplexScalar;
70
+ typedef Eigen::Index Index; ///< \deprecated since Eigen 3.3
71
+
72
+ typedef Matrix<ComplexScalar, ColsAtCompileTime, 1, Options & ~RowMajor, MaxColsAtCompileTime, 1> EigenvalueType;
73
+ typedef Matrix<Scalar, ColsAtCompileTime, 1, Options & ~RowMajor, MaxColsAtCompileTime, 1> ColumnVectorType;
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+
75
+ /** \brief Default constructor.
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+ *
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+ * \param [in] size Positive integer, size of the matrix whose QZ decomposition will be computed.
78
+ *
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+ * The default constructor is useful in cases in which the user intends to
80
+ * perform decompositions via compute(). The \p size parameter is only
81
+ * used as a hint. It is not an error to give a wrong \p size, but it may
82
+ * impair performance.
83
+ *
84
+ * \sa compute() for an example.
85
+ */
86
+ explicit RealQZ(Index size = RowsAtCompileTime==Dynamic ? 1 : RowsAtCompileTime) :
87
+ m_S(size, size),
88
+ m_T(size, size),
89
+ m_Q(size, size),
90
+ m_Z(size, size),
91
+ m_workspace(size*2),
92
+ m_maxIters(400),
93
+ m_isInitialized(false),
94
+ m_computeQZ(true)
95
+ {}
96
+
97
+ /** \brief Constructor; computes real QZ decomposition of given matrices
98
+ *
99
+ * \param[in] A Matrix A.
100
+ * \param[in] B Matrix B.
101
+ * \param[in] computeQZ If false, A and Z are not computed.
102
+ *
103
+ * This constructor calls compute() to compute the QZ decomposition.
104
+ */
105
+ RealQZ(const MatrixType& A, const MatrixType& B, bool computeQZ = true) :
106
+ m_S(A.rows(),A.cols()),
107
+ m_T(A.rows(),A.cols()),
108
+ m_Q(A.rows(),A.cols()),
109
+ m_Z(A.rows(),A.cols()),
110
+ m_workspace(A.rows()*2),
111
+ m_maxIters(400),
112
+ m_isInitialized(false),
113
+ m_computeQZ(true)
114
+ {
115
+ compute(A, B, computeQZ);
116
+ }
117
+
118
+ /** \brief Returns matrix Q in the QZ decomposition.
119
+ *
120
+ * \returns A const reference to the matrix Q.
121
+ */
122
+ const MatrixType& matrixQ() const {
123
+ eigen_assert(m_isInitialized && "RealQZ is not initialized.");
124
+ eigen_assert(m_computeQZ && "The matrices Q and Z have not been computed during the QZ decomposition.");
125
+ return m_Q;
126
+ }
127
+
128
+ /** \brief Returns matrix Z in the QZ decomposition.
129
+ *
130
+ * \returns A const reference to the matrix Z.
131
+ */
132
+ const MatrixType& matrixZ() const {
133
+ eigen_assert(m_isInitialized && "RealQZ is not initialized.");
134
+ eigen_assert(m_computeQZ && "The matrices Q and Z have not been computed during the QZ decomposition.");
135
+ return m_Z;
136
+ }
137
+
138
+ /** \brief Returns matrix S in the QZ decomposition.
139
+ *
140
+ * \returns A const reference to the matrix S.
141
+ */
142
+ const MatrixType& matrixS() const {
143
+ eigen_assert(m_isInitialized && "RealQZ is not initialized.");
144
+ return m_S;
145
+ }
146
+
147
+ /** \brief Returns matrix S in the QZ decomposition.
148
+ *
149
+ * \returns A const reference to the matrix S.
150
+ */
151
+ const MatrixType& matrixT() const {
152
+ eigen_assert(m_isInitialized && "RealQZ is not initialized.");
153
+ return m_T;
154
+ }
155
+
156
+ /** \brief Computes QZ decomposition of given matrix.
157
+ *
158
+ * \param[in] A Matrix A.
159
+ * \param[in] B Matrix B.
160
+ * \param[in] computeQZ If false, A and Z are not computed.
161
+ * \returns Reference to \c *this
162
+ */
163
+ RealQZ& compute(const MatrixType& A, const MatrixType& B, bool computeQZ = true);
164
+
165
+ /** \brief Reports whether previous computation was successful.
166
+ *
167
+ * \returns \c Success if computation was successful, \c NoConvergence otherwise.
168
+ */
169
+ ComputationInfo info() const
170
+ {
171
+ eigen_assert(m_isInitialized && "RealQZ is not initialized.");
172
+ return m_info;
173
+ }
174
+
175
+ /** \brief Returns number of performed QR-like iterations.
176
+ */
177
+ Index iterations() const
178
+ {
179
+ eigen_assert(m_isInitialized && "RealQZ is not initialized.");
180
+ return m_global_iter;
181
+ }
182
+
183
+ /** Sets the maximal number of iterations allowed to converge to one eigenvalue
184
+ * or decouple the problem.
185
+ */
186
+ RealQZ& setMaxIterations(Index maxIters)
187
+ {
188
+ m_maxIters = maxIters;
189
+ return *this;
190
+ }
191
+
192
+ private:
193
+
194
+ MatrixType m_S, m_T, m_Q, m_Z;
195
+ Matrix<Scalar,Dynamic,1> m_workspace;
196
+ ComputationInfo m_info;
197
+ Index m_maxIters;
198
+ bool m_isInitialized;
199
+ bool m_computeQZ;
200
+ Scalar m_normOfT, m_normOfS;
201
+ Index m_global_iter;
202
+
203
+ typedef Matrix<Scalar,3,1> Vector3s;
204
+ typedef Matrix<Scalar,2,1> Vector2s;
205
+ typedef Matrix<Scalar,2,2> Matrix2s;
206
+ typedef JacobiRotation<Scalar> JRs;
207
+
208
+ void hessenbergTriangular();
209
+ void computeNorms();
210
+ Index findSmallSubdiagEntry(Index iu);
211
+ Index findSmallDiagEntry(Index f, Index l);
212
+ void splitOffTwoRows(Index i);
213
+ void pushDownZero(Index z, Index f, Index l);
214
+ void step(Index f, Index l, Index iter);
215
+
216
+ }; // RealQZ
217
+
218
+ /** \internal Reduces S and T to upper Hessenberg - triangular form */
219
+ template<typename MatrixType>
220
+ void RealQZ<MatrixType>::hessenbergTriangular()
221
+ {
222
+
223
+ const Index dim = m_S.cols();
224
+
225
+ // perform QR decomposition of T, overwrite T with R, save Q
226
+ HouseholderQR<MatrixType> qrT(m_T);
227
+ m_T = qrT.matrixQR();
228
+ m_T.template triangularView<StrictlyLower>().setZero();
229
+ m_Q = qrT.householderQ();
230
+ // overwrite S with Q* S
231
+ m_S.applyOnTheLeft(m_Q.adjoint());
232
+ // init Z as Identity
233
+ if (m_computeQZ)
234
+ m_Z = MatrixType::Identity(dim,dim);
235
+ // reduce S to upper Hessenberg with Givens rotations
236
+ for (Index j=0; j<=dim-3; j++) {
237
+ for (Index i=dim-1; i>=j+2; i--) {
238
+ JRs G;
239
+ // kill S(i,j)
240
+ if(m_S.coeff(i,j) != 0)
241
+ {
242
+ G.makeGivens(m_S.coeff(i-1,j), m_S.coeff(i,j), &m_S.coeffRef(i-1, j));
243
+ m_S.coeffRef(i,j) = Scalar(0.0);
244
+ m_S.rightCols(dim-j-1).applyOnTheLeft(i-1,i,G.adjoint());
245
+ m_T.rightCols(dim-i+1).applyOnTheLeft(i-1,i,G.adjoint());
246
+ // update Q
247
+ if (m_computeQZ)
248
+ m_Q.applyOnTheRight(i-1,i,G);
249
+ }
250
+ // kill T(i,i-1)
251
+ if(m_T.coeff(i,i-1)!=Scalar(0))
252
+ {
253
+ G.makeGivens(m_T.coeff(i,i), m_T.coeff(i,i-1), &m_T.coeffRef(i,i));
254
+ m_T.coeffRef(i,i-1) = Scalar(0.0);
255
+ m_S.applyOnTheRight(i,i-1,G);
256
+ m_T.topRows(i).applyOnTheRight(i,i-1,G);
257
+ // update Z
258
+ if (m_computeQZ)
259
+ m_Z.applyOnTheLeft(i,i-1,G.adjoint());
260
+ }
261
+ }
262
+ }
263
+ }
264
+
265
+ /** \internal Computes vector L1 norms of S and T when in Hessenberg-Triangular form already */
266
+ template<typename MatrixType>
267
+ inline void RealQZ<MatrixType>::computeNorms()
268
+ {
269
+ const Index size = m_S.cols();
270
+ m_normOfS = Scalar(0.0);
271
+ m_normOfT = Scalar(0.0);
272
+ for (Index j = 0; j < size; ++j)
273
+ {
274
+ m_normOfS += m_S.col(j).segment(0, (std::min)(size,j+2)).cwiseAbs().sum();
275
+ m_normOfT += m_T.row(j).segment(j, size - j).cwiseAbs().sum();
276
+ }
277
+ }
278
+
279
+
280
+ /** \internal Look for single small sub-diagonal element S(res, res-1) and return res (or 0) */
281
+ template<typename MatrixType>
282
+ inline Index RealQZ<MatrixType>::findSmallSubdiagEntry(Index iu)
283
+ {
284
+ using std::abs;
285
+ Index res = iu;
286
+ while (res > 0)
287
+ {
288
+ Scalar s = abs(m_S.coeff(res-1,res-1)) + abs(m_S.coeff(res,res));
289
+ if (s == Scalar(0.0))
290
+ s = m_normOfS;
291
+ if (abs(m_S.coeff(res,res-1)) < NumTraits<Scalar>::epsilon() * s)
292
+ break;
293
+ res--;
294
+ }
295
+ return res;
296
+ }
297
+
298
+ /** \internal Look for single small diagonal element T(res, res) for res between f and l, and return res (or f-1) */
299
+ template<typename MatrixType>
300
+ inline Index RealQZ<MatrixType>::findSmallDiagEntry(Index f, Index l)
301
+ {
302
+ using std::abs;
303
+ Index res = l;
304
+ while (res >= f) {
305
+ if (abs(m_T.coeff(res,res)) <= NumTraits<Scalar>::epsilon() * m_normOfT)
306
+ break;
307
+ res--;
308
+ }
309
+ return res;
310
+ }
311
+
312
+ /** \internal decouple 2x2 diagonal block in rows i, i+1 if eigenvalues are real */
313
+ template<typename MatrixType>
314
+ inline void RealQZ<MatrixType>::splitOffTwoRows(Index i)
315
+ {
316
+ using std::abs;
317
+ using std::sqrt;
318
+ const Index dim=m_S.cols();
319
+ if (abs(m_S.coeff(i+1,i))==Scalar(0))
320
+ return;
321
+ Index j = findSmallDiagEntry(i,i+1);
322
+ if (j==i-1)
323
+ {
324
+ // block of (S T^{-1})
325
+ Matrix2s STi = m_T.template block<2,2>(i,i).template triangularView<Upper>().
326
+ template solve<OnTheRight>(m_S.template block<2,2>(i,i));
327
+ Scalar p = Scalar(0.5)*(STi(0,0)-STi(1,1));
328
+ Scalar q = p*p + STi(1,0)*STi(0,1);
329
+ if (q>=0) {
330
+ Scalar z = sqrt(q);
331
+ // one QR-like iteration for ABi - lambda I
332
+ // is enough - when we know exact eigenvalue in advance,
333
+ // convergence is immediate
334
+ JRs G;
335
+ if (p>=0)
336
+ G.makeGivens(p + z, STi(1,0));
337
+ else
338
+ G.makeGivens(p - z, STi(1,0));
339
+ m_S.rightCols(dim-i).applyOnTheLeft(i,i+1,G.adjoint());
340
+ m_T.rightCols(dim-i).applyOnTheLeft(i,i+1,G.adjoint());
341
+ // update Q
342
+ if (m_computeQZ)
343
+ m_Q.applyOnTheRight(i,i+1,G);
344
+
345
+ G.makeGivens(m_T.coeff(i+1,i+1), m_T.coeff(i+1,i));
346
+ m_S.topRows(i+2).applyOnTheRight(i+1,i,G);
347
+ m_T.topRows(i+2).applyOnTheRight(i+1,i,G);
348
+ // update Z
349
+ if (m_computeQZ)
350
+ m_Z.applyOnTheLeft(i+1,i,G.adjoint());
351
+
352
+ m_S.coeffRef(i+1,i) = Scalar(0.0);
353
+ m_T.coeffRef(i+1,i) = Scalar(0.0);
354
+ }
355
+ }
356
+ else
357
+ {
358
+ pushDownZero(j,i,i+1);
359
+ }
360
+ }
361
+
362
+ /** \internal use zero in T(z,z) to zero S(l,l-1), working in block f..l */
363
+ template<typename MatrixType>
364
+ inline void RealQZ<MatrixType>::pushDownZero(Index z, Index f, Index l)
365
+ {
366
+ JRs G;
367
+ const Index dim = m_S.cols();
368
+ for (Index zz=z; zz<l; zz++)
369
+ {
370
+ // push 0 down
371
+ Index firstColS = zz>f ? (zz-1) : zz;
372
+ G.makeGivens(m_T.coeff(zz, zz+1), m_T.coeff(zz+1, zz+1));
373
+ m_S.rightCols(dim-firstColS).applyOnTheLeft(zz,zz+1,G.adjoint());
374
+ m_T.rightCols(dim-zz).applyOnTheLeft(zz,zz+1,G.adjoint());
375
+ m_T.coeffRef(zz+1,zz+1) = Scalar(0.0);
376
+ // update Q
377
+ if (m_computeQZ)
378
+ m_Q.applyOnTheRight(zz,zz+1,G);
379
+ // kill S(zz+1, zz-1)
380
+ if (zz>f)
381
+ {
382
+ G.makeGivens(m_S.coeff(zz+1, zz), m_S.coeff(zz+1,zz-1));
383
+ m_S.topRows(zz+2).applyOnTheRight(zz, zz-1,G);
384
+ m_T.topRows(zz+1).applyOnTheRight(zz, zz-1,G);
385
+ m_S.coeffRef(zz+1,zz-1) = Scalar(0.0);
386
+ // update Z
387
+ if (m_computeQZ)
388
+ m_Z.applyOnTheLeft(zz,zz-1,G.adjoint());
389
+ }
390
+ }
391
+ // finally kill S(l,l-1)
392
+ G.makeGivens(m_S.coeff(l,l), m_S.coeff(l,l-1));
393
+ m_S.applyOnTheRight(l,l-1,G);
394
+ m_T.applyOnTheRight(l,l-1,G);
395
+ m_S.coeffRef(l,l-1)=Scalar(0.0);
396
+ // update Z
397
+ if (m_computeQZ)
398
+ m_Z.applyOnTheLeft(l,l-1,G.adjoint());
399
+ }
400
+
401
+ /** \internal QR-like iterative step for block f..l */
402
+ template<typename MatrixType>
403
+ inline void RealQZ<MatrixType>::step(Index f, Index l, Index iter)
404
+ {
405
+ using std::abs;
406
+ const Index dim = m_S.cols();
407
+
408
+ // x, y, z
409
+ Scalar x, y, z;
410
+ if (iter==10)
411
+ {
412
+ // Wilkinson ad hoc shift
413
+ const Scalar
414
+ a11=m_S.coeff(f+0,f+0), a12=m_S.coeff(f+0,f+1),
415
+ a21=m_S.coeff(f+1,f+0), a22=m_S.coeff(f+1,f+1), a32=m_S.coeff(f+2,f+1),
416
+ b12=m_T.coeff(f+0,f+1),
417
+ b11i=Scalar(1.0)/m_T.coeff(f+0,f+0),
418
+ b22i=Scalar(1.0)/m_T.coeff(f+1,f+1),
419
+ a87=m_S.coeff(l-1,l-2),
420
+ a98=m_S.coeff(l-0,l-1),
421
+ b77i=Scalar(1.0)/m_T.coeff(l-2,l-2),
422
+ b88i=Scalar(1.0)/m_T.coeff(l-1,l-1);
423
+ Scalar ss = abs(a87*b77i) + abs(a98*b88i),
424
+ lpl = Scalar(1.5)*ss,
425
+ ll = ss*ss;
426
+ x = ll + a11*a11*b11i*b11i - lpl*a11*b11i + a12*a21*b11i*b22i
427
+ - a11*a21*b12*b11i*b11i*b22i;
428
+ y = a11*a21*b11i*b11i - lpl*a21*b11i + a21*a22*b11i*b22i
429
+ - a21*a21*b12*b11i*b11i*b22i;
430
+ z = a21*a32*b11i*b22i;
431
+ }
432
+ else if (iter==16)
433
+ {
434
+ // another exceptional shift
435
+ x = m_S.coeff(f,f)/m_T.coeff(f,f)-m_S.coeff(l,l)/m_T.coeff(l,l) + m_S.coeff(l,l-1)*m_T.coeff(l-1,l) /
436
+ (m_T.coeff(l-1,l-1)*m_T.coeff(l,l));
437
+ y = m_S.coeff(f+1,f)/m_T.coeff(f,f);
438
+ z = 0;
439
+ }
440
+ else if (iter>23 && !(iter%8))
441
+ {
442
+ // extremely exceptional shift
443
+ x = internal::random<Scalar>(-1.0,1.0);
444
+ y = internal::random<Scalar>(-1.0,1.0);
445
+ z = internal::random<Scalar>(-1.0,1.0);
446
+ }
447
+ else
448
+ {
449
+ // Compute the shifts: (x,y,z,0...) = (AB^-1 - l1 I) (AB^-1 - l2 I) e1
450
+ // where l1 and l2 are the eigenvalues of the 2x2 matrix C = U V^-1 where
451
+ // U and V are 2x2 bottom right sub matrices of A and B. Thus:
452
+ // = AB^-1AB^-1 + l1 l2 I - (l1+l2)(AB^-1)
453
+ // = AB^-1AB^-1 + det(M) - tr(M)(AB^-1)
454
+ // Since we are only interested in having x, y, z with a correct ratio, we have:
455
+ const Scalar
456
+ a11 = m_S.coeff(f,f), a12 = m_S.coeff(f,f+1),
457
+ a21 = m_S.coeff(f+1,f), a22 = m_S.coeff(f+1,f+1),
458
+ a32 = m_S.coeff(f+2,f+1),
459
+
460
+ a88 = m_S.coeff(l-1,l-1), a89 = m_S.coeff(l-1,l),
461
+ a98 = m_S.coeff(l,l-1), a99 = m_S.coeff(l,l),
462
+
463
+ b11 = m_T.coeff(f,f), b12 = m_T.coeff(f,f+1),
464
+ b22 = m_T.coeff(f+1,f+1),
465
+
466
+ b88 = m_T.coeff(l-1,l-1), b89 = m_T.coeff(l-1,l),
467
+ b99 = m_T.coeff(l,l);
468
+
469
+ x = ( (a88/b88 - a11/b11)*(a99/b99 - a11/b11) - (a89/b99)*(a98/b88) + (a98/b88)*(b89/b99)*(a11/b11) ) * (b11/a21)
470
+ + a12/b22 - (a11/b11)*(b12/b22);
471
+ y = (a22/b22-a11/b11) - (a21/b11)*(b12/b22) - (a88/b88-a11/b11) - (a99/b99-a11/b11) + (a98/b88)*(b89/b99);
472
+ z = a32/b22;
473
+ }
474
+
475
+ JRs G;
476
+
477
+ for (Index k=f; k<=l-2; k++)
478
+ {
479
+ // variables for Householder reflections
480
+ Vector2s essential2;
481
+ Scalar tau, beta;
482
+
483
+ Vector3s hr(x,y,z);
484
+
485
+ // Q_k to annihilate S(k+1,k-1) and S(k+2,k-1)
486
+ hr.makeHouseholderInPlace(tau, beta);
487
+ essential2 = hr.template bottomRows<2>();
488
+ Index fc=(std::max)(k-1,Index(0)); // first col to update
489
+ m_S.template middleRows<3>(k).rightCols(dim-fc).applyHouseholderOnTheLeft(essential2, tau, m_workspace.data());
490
+ m_T.template middleRows<3>(k).rightCols(dim-fc).applyHouseholderOnTheLeft(essential2, tau, m_workspace.data());
491
+ if (m_computeQZ)
492
+ m_Q.template middleCols<3>(k).applyHouseholderOnTheRight(essential2, tau, m_workspace.data());
493
+ if (k>f)
494
+ m_S.coeffRef(k+2,k-1) = m_S.coeffRef(k+1,k-1) = Scalar(0.0);
495
+
496
+ // Z_{k1} to annihilate T(k+2,k+1) and T(k+2,k)
497
+ hr << m_T.coeff(k+2,k+2),m_T.coeff(k+2,k),m_T.coeff(k+2,k+1);
498
+ hr.makeHouseholderInPlace(tau, beta);
499
+ essential2 = hr.template bottomRows<2>();
500
+ {
501
+ Index lr = (std::min)(k+4,dim); // last row to update
502
+ Map<Matrix<Scalar,Dynamic,1> > tmp(m_workspace.data(),lr);
503
+ // S
504
+ tmp = m_S.template middleCols<2>(k).topRows(lr) * essential2;
505
+ tmp += m_S.col(k+2).head(lr);
506
+ m_S.col(k+2).head(lr) -= tau*tmp;
507
+ m_S.template middleCols<2>(k).topRows(lr) -= (tau*tmp) * essential2.adjoint();
508
+ // T
509
+ tmp = m_T.template middleCols<2>(k).topRows(lr) * essential2;
510
+ tmp += m_T.col(k+2).head(lr);
511
+ m_T.col(k+2).head(lr) -= tau*tmp;
512
+ m_T.template middleCols<2>(k).topRows(lr) -= (tau*tmp) * essential2.adjoint();
513
+ }
514
+ if (m_computeQZ)
515
+ {
516
+ // Z
517
+ Map<Matrix<Scalar,1,Dynamic> > tmp(m_workspace.data(),dim);
518
+ tmp = essential2.adjoint()*(m_Z.template middleRows<2>(k));
519
+ tmp += m_Z.row(k+2);
520
+ m_Z.row(k+2) -= tau*tmp;
521
+ m_Z.template middleRows<2>(k) -= essential2 * (tau*tmp);
522
+ }
523
+ m_T.coeffRef(k+2,k) = m_T.coeffRef(k+2,k+1) = Scalar(0.0);
524
+
525
+ // Z_{k2} to annihilate T(k+1,k)
526
+ G.makeGivens(m_T.coeff(k+1,k+1), m_T.coeff(k+1,k));
527
+ m_S.applyOnTheRight(k+1,k,G);
528
+ m_T.applyOnTheRight(k+1,k,G);
529
+ // update Z
530
+ if (m_computeQZ)
531
+ m_Z.applyOnTheLeft(k+1,k,G.adjoint());
532
+ m_T.coeffRef(k+1,k) = Scalar(0.0);
533
+
534
+ // update x,y,z
535
+ x = m_S.coeff(k+1,k);
536
+ y = m_S.coeff(k+2,k);
537
+ if (k < l-2)
538
+ z = m_S.coeff(k+3,k);
539
+ } // loop over k
540
+
541
+ // Q_{n-1} to annihilate y = S(l,l-2)
542
+ G.makeGivens(x,y);
543
+ m_S.applyOnTheLeft(l-1,l,G.adjoint());
544
+ m_T.applyOnTheLeft(l-1,l,G.adjoint());
545
+ if (m_computeQZ)
546
+ m_Q.applyOnTheRight(l-1,l,G);
547
+ m_S.coeffRef(l,l-2) = Scalar(0.0);
548
+
549
+ // Z_{n-1} to annihilate T(l,l-1)
550
+ G.makeGivens(m_T.coeff(l,l),m_T.coeff(l,l-1));
551
+ m_S.applyOnTheRight(l,l-1,G);
552
+ m_T.applyOnTheRight(l,l-1,G);
553
+ if (m_computeQZ)
554
+ m_Z.applyOnTheLeft(l,l-1,G.adjoint());
555
+ m_T.coeffRef(l,l-1) = Scalar(0.0);
556
+ }
557
+
558
+ template<typename MatrixType>
559
+ RealQZ<MatrixType>& RealQZ<MatrixType>::compute(const MatrixType& A_in, const MatrixType& B_in, bool computeQZ)
560
+ {
561
+
562
+ const Index dim = A_in.cols();
563
+
564
+ eigen_assert (A_in.rows()==dim && A_in.cols()==dim
565
+ && B_in.rows()==dim && B_in.cols()==dim
566
+ && "Need square matrices of the same dimension");
567
+
568
+ m_isInitialized = true;
569
+ m_computeQZ = computeQZ;
570
+ m_S = A_in; m_T = B_in;
571
+ m_workspace.resize(dim*2);
572
+ m_global_iter = 0;
573
+
574
+ // entrance point: hessenberg triangular decomposition
575
+ hessenbergTriangular();
576
+ // compute L1 vector norms of T, S into m_normOfS, m_normOfT
577
+ computeNorms();
578
+
579
+ Index l = dim-1,
580
+ f,
581
+ local_iter = 0;
582
+
583
+ while (l>0 && local_iter<m_maxIters)
584
+ {
585
+ f = findSmallSubdiagEntry(l);
586
+ // now rows and columns f..l (including) decouple from the rest of the problem
587
+ if (f>0) m_S.coeffRef(f,f-1) = Scalar(0.0);
588
+ if (f == l) // One root found
589
+ {
590
+ l--;
591
+ local_iter = 0;
592
+ }
593
+ else if (f == l-1) // Two roots found
594
+ {
595
+ splitOffTwoRows(f);
596
+ l -= 2;
597
+ local_iter = 0;
598
+ }
599
+ else // No convergence yet
600
+ {
601
+ // if there's zero on diagonal of T, we can isolate an eigenvalue with Givens rotations
602
+ Index z = findSmallDiagEntry(f,l);
603
+ if (z>=f)
604
+ {
605
+ // zero found
606
+ pushDownZero(z,f,l);
607
+ }
608
+ else
609
+ {
610
+ // We are sure now that S.block(f,f, l-f+1,l-f+1) is underuced upper-Hessenberg
611
+ // and T.block(f,f, l-f+1,l-f+1) is invertible uper-triangular, which allows to
612
+ // apply a QR-like iteration to rows and columns f..l.
613
+ step(f,l, local_iter);
614
+ local_iter++;
615
+ m_global_iter++;
616
+ }
617
+ }
618
+ }
619
+ // check if we converged before reaching iterations limit
620
+ m_info = (local_iter<m_maxIters) ? Success : NoConvergence;
621
+
622
+ // For each non triangular 2x2 diagonal block of S,
623
+ // reduce the respective 2x2 diagonal block of T to positive diagonal form using 2x2 SVD.
624
+ // This step is not mandatory for QZ, but it does help further extraction of eigenvalues/eigenvectors,
625
+ // and is in par with Lapack/Matlab QZ.
626
+ if(m_info==Success)
627
+ {
628
+ for(Index i=0; i<dim-1; ++i)
629
+ {
630
+ if(m_S.coeff(i+1, i) != Scalar(0))
631
+ {
632
+ JacobiRotation<Scalar> j_left, j_right;
633
+ internal::real_2x2_jacobi_svd(m_T, i, i+1, &j_left, &j_right);
634
+
635
+ // Apply resulting Jacobi rotations
636
+ m_S.applyOnTheLeft(i,i+1,j_left);
637
+ m_S.applyOnTheRight(i,i+1,j_right);
638
+ m_T.applyOnTheLeft(i,i+1,j_left);
639
+ m_T.applyOnTheRight(i,i+1,j_right);
640
+ m_T(i+1,i) = m_T(i,i+1) = Scalar(0);
641
+
642
+ if(m_computeQZ) {
643
+ m_Q.applyOnTheRight(i,i+1,j_left.transpose());
644
+ m_Z.applyOnTheLeft(i,i+1,j_right.transpose());
645
+ }
646
+
647
+ i++;
648
+ }
649
+ }
650
+ }
651
+
652
+ return *this;
653
+ } // end compute
654
+
655
+ } // end namespace Eigen
656
+
657
+ #endif //EIGEN_REAL_QZ