umappp 0.1.2
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- checksums.yaml +7 -0
- data/LICENSE.txt +25 -0
- data/README.md +110 -0
- data/ext/umappp/extconf.rb +25 -0
- data/ext/umappp/numo.hpp +867 -0
- data/ext/umappp/umappp.cpp +225 -0
- data/lib/umappp/version.rb +5 -0
- data/lib/umappp.rb +41 -0
- data/vendor/Eigen/Cholesky +45 -0
- data/vendor/Eigen/CholmodSupport +48 -0
- data/vendor/Eigen/Core +384 -0
- data/vendor/Eigen/Dense +7 -0
- data/vendor/Eigen/Eigen +2 -0
- data/vendor/Eigen/Eigenvalues +60 -0
- data/vendor/Eigen/Geometry +59 -0
- data/vendor/Eigen/Householder +29 -0
- data/vendor/Eigen/IterativeLinearSolvers +48 -0
- data/vendor/Eigen/Jacobi +32 -0
- data/vendor/Eigen/KLUSupport +41 -0
- data/vendor/Eigen/LU +47 -0
- data/vendor/Eigen/MetisSupport +35 -0
- data/vendor/Eigen/OrderingMethods +70 -0
- data/vendor/Eigen/PaStiXSupport +49 -0
- data/vendor/Eigen/PardisoSupport +35 -0
- data/vendor/Eigen/QR +50 -0
- data/vendor/Eigen/QtAlignedMalloc +39 -0
- data/vendor/Eigen/SPQRSupport +34 -0
- data/vendor/Eigen/SVD +50 -0
- data/vendor/Eigen/Sparse +34 -0
- data/vendor/Eigen/SparseCholesky +37 -0
- data/vendor/Eigen/SparseCore +69 -0
- data/vendor/Eigen/SparseLU +50 -0
- data/vendor/Eigen/SparseQR +36 -0
- data/vendor/Eigen/StdDeque +27 -0
- data/vendor/Eigen/StdList +26 -0
- data/vendor/Eigen/StdVector +27 -0
- data/vendor/Eigen/SuperLUSupport +64 -0
- data/vendor/Eigen/UmfPackSupport +40 -0
- data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
- data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
- data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
- data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
- data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
- data/vendor/Eigen/src/Core/Array.h +417 -0
- data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
- data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
- data/vendor/Eigen/src/Core/Assign.h +90 -0
- data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
- data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
- data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
- data/vendor/Eigen/src/Core/Block.h +448 -0
- data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
- data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
- data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
- data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
- data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
- data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
- data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
- data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
- data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
- data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
- data/vendor/Eigen/src/Core/DenseBase.h +701 -0
- data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
- data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
- data/vendor/Eigen/src/Core/Diagonal.h +258 -0
- data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
- data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
- data/vendor/Eigen/src/Core/Dot.h +318 -0
- data/vendor/Eigen/src/Core/EigenBase.h +160 -0
- data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
- data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
- data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
- data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
- data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
- data/vendor/Eigen/src/Core/IO.h +258 -0
- data/vendor/Eigen/src/Core/IndexedView.h +237 -0
- data/vendor/Eigen/src/Core/Inverse.h +117 -0
- data/vendor/Eigen/src/Core/Map.h +171 -0
- data/vendor/Eigen/src/Core/MapBase.h +310 -0
- data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
- data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
- data/vendor/Eigen/src/Core/Matrix.h +565 -0
- data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
- data/vendor/Eigen/src/Core/NestByValue.h +85 -0
- data/vendor/Eigen/src/Core/NoAlias.h +109 -0
- data/vendor/Eigen/src/Core/NumTraits.h +335 -0
- data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
- data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
- data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
- data/vendor/Eigen/src/Core/Product.h +191 -0
- data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
- data/vendor/Eigen/src/Core/Random.h +218 -0
- data/vendor/Eigen/src/Core/Redux.h +515 -0
- data/vendor/Eigen/src/Core/Ref.h +381 -0
- data/vendor/Eigen/src/Core/Replicate.h +142 -0
- data/vendor/Eigen/src/Core/Reshaped.h +454 -0
- data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
- data/vendor/Eigen/src/Core/Reverse.h +217 -0
- data/vendor/Eigen/src/Core/Select.h +164 -0
- data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
- data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
- data/vendor/Eigen/src/Core/Solve.h +188 -0
- data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
- data/vendor/Eigen/src/Core/SolverBase.h +168 -0
- data/vendor/Eigen/src/Core/StableNorm.h +251 -0
- data/vendor/Eigen/src/Core/StlIterators.h +463 -0
- data/vendor/Eigen/src/Core/Stride.h +116 -0
- data/vendor/Eigen/src/Core/Swap.h +68 -0
- data/vendor/Eigen/src/Core/Transpose.h +464 -0
- data/vendor/Eigen/src/Core/Transpositions.h +386 -0
- data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
- data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
- data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
- data/vendor/Eigen/src/Core/Visitor.h +381 -0
- data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
- data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
- data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
- data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
- data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
- data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
- data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
- data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
- data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
- data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
- data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
- data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
- data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
- data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
- data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
- data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
- data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
- data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
- data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
- data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
- data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
- data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
- data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
- data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
- data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
- data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
- data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
- data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
- data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
- data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
- data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
- data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
- data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
- data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
- data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
- data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
- data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
- data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
- data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
- data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
- data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
- data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
- data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
- data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
- data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
- data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
- data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
- data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
- data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
- data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
- data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
- data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
- data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
- data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
- data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
- data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
- data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
- data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
- data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
- data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
- data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
- data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
- data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
- data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
- data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
- data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
- data/vendor/Eigen/src/Core/util/Constants.h +563 -0
- data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
- data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
- data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
- data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
- data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
- data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
- data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
- data/vendor/Eigen/src/Core/util/Meta.h +812 -0
- data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
- data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
- data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
- data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
- data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
- data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
- data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
- data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
- data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
- data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
- data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
- data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
- data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
- data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
- data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
- data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
- data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
- data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
- data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
- data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
- data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
- data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
- data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
- data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
- data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
- data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
- data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
- data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
- data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
- data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
- data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
- data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
- data/vendor/Eigen/src/Geometry/Translation.h +202 -0
- data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
- data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
- data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
- data/vendor/Eigen/src/Householder/Householder.h +176 -0
- data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
- data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
- data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
- data/vendor/Eigen/src/LU/Determinant.h +117 -0
- data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
- data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
- data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
- data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
- data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
- data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
- data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
- data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
- data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
- data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
- data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
- data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
- data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
- data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
- data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
- data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
- data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
- data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
- data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
- data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
- data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
- data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
- data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
- data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
- data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
- data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
- data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
- data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
- data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
- data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
- data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
- data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
- data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
- data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
- data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
- data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
- data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
- data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
- data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
- data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
- data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
- data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
- data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
- data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
- data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
- data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
- data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
- data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
- data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
- data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
- data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
- data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
- data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
- data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
- data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
- data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
- data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
- data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
- data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
- data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
- data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
- data/vendor/Eigen/src/StlSupport/details.h +84 -0
- data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
- data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
- data/vendor/Eigen/src/misc/Image.h +82 -0
- data/vendor/Eigen/src/misc/Kernel.h +79 -0
- data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
- data/vendor/Eigen/src/misc/blas.h +440 -0
- data/vendor/Eigen/src/misc/lapack.h +152 -0
- data/vendor/Eigen/src/misc/lapacke.h +16292 -0
- data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
- data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
- data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
- data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
- data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
- data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
- data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
- data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
- data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
- data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
- data/vendor/aarand/aarand.hpp +114 -0
- data/vendor/annoy/annoylib.h +1495 -0
- data/vendor/annoy/kissrandom.h +120 -0
- data/vendor/annoy/mman.h +242 -0
- data/vendor/hnswlib/bruteforce.h +152 -0
- data/vendor/hnswlib/hnswalg.h +1192 -0
- data/vendor/hnswlib/hnswlib.h +108 -0
- data/vendor/hnswlib/space_ip.h +282 -0
- data/vendor/hnswlib/space_l2.h +281 -0
- data/vendor/hnswlib/visited_list_pool.h +79 -0
- data/vendor/irlba/irlba.hpp +575 -0
- data/vendor/irlba/lanczos.hpp +212 -0
- data/vendor/irlba/parallel.hpp +474 -0
- data/vendor/irlba/utils.hpp +224 -0
- data/vendor/irlba/wrappers.hpp +228 -0
- data/vendor/kmeans/Base.hpp +75 -0
- data/vendor/kmeans/Details.hpp +79 -0
- data/vendor/kmeans/HartiganWong.hpp +492 -0
- data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
- data/vendor/kmeans/InitializeNone.hpp +44 -0
- data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
- data/vendor/kmeans/InitializeRandom.hpp +91 -0
- data/vendor/kmeans/Kmeans.hpp +161 -0
- data/vendor/kmeans/Lloyd.hpp +134 -0
- data/vendor/kmeans/MiniBatch.hpp +269 -0
- data/vendor/kmeans/QuickSearch.hpp +179 -0
- data/vendor/kmeans/compute_centroids.hpp +32 -0
- data/vendor/kmeans/compute_wcss.hpp +27 -0
- data/vendor/kmeans/is_edge_case.hpp +42 -0
- data/vendor/kmeans/random.hpp +55 -0
- data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
- data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
- data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
- data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
- data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
- data/vendor/knncolle/knncolle.hpp +34 -0
- data/vendor/knncolle/utils/Base.hpp +100 -0
- data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
- data/vendor/knncolle/utils/distances.hpp +98 -0
- data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
- data/vendor/powerit/PowerIterations.hpp +157 -0
- data/vendor/umappp/NeighborList.hpp +37 -0
- data/vendor/umappp/Umap.hpp +662 -0
- data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
- data/vendor/umappp/find_ab.hpp +157 -0
- data/vendor/umappp/neighbor_similarities.hpp +136 -0
- data/vendor/umappp/optimize_layout.hpp +285 -0
- data/vendor/umappp/spectral_init.hpp +181 -0
- data/vendor/umappp/umappp.hpp +13 -0
- metadata +465 -0
@@ -0,0 +1,272 @@
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// This file is part of Eigen, a lightweight C++ template library
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// for linear algebra.
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//
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// Copyright (C) 2017 Gael Guennebaud <gael.guennebaud@inria.fr>
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//
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// This Source Code Form is subject to the terms of the Mozilla
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// Public License v. 2.0. If a copy of the MPL was not distributed
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// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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#ifndef EIGEN_INTEGRAL_CONSTANT_H
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#define EIGEN_INTEGRAL_CONSTANT_H
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namespace Eigen {
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namespace internal {
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template<int N> class FixedInt;
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template<int N> class VariableAndFixedInt;
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/** \internal
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* \class FixedInt
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*
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* This class embeds a compile-time integer \c N.
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*
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* It is similar to c++11 std::integral_constant<int,N> but with some additional features
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* such as:
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* - implicit conversion to int
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* - arithmetic and some bitwise operators: -, +, *, /, %, &, |
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* - c++98/14 compatibility with fix<N> and fix<N>() syntax to define integral constants.
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*
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* It is strongly discouraged to directly deal with this class FixedInt. Instances are expcected to
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* be created by the user using Eigen::fix<N> or Eigen::fix<N>(). In C++98-11, the former syntax does
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* not create a FixedInt<N> instance but rather a point to function that needs to be \em cleaned-up
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* using the generic helper:
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* \code
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* internal::cleanup_index_type<T>::type
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* internal::cleanup_index_type<T,DynamicKey>::type
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* \endcode
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* where T can a FixedInt<N>, a pointer to function FixedInt<N> (*)(), or numerous other integer-like representations.
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* \c DynamicKey is either Dynamic (default) or DynamicIndex and used to identify true compile-time values.
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*
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* For convenience, you can extract the compile-time value \c N in a generic way using the following helper:
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* \code
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* internal::get_fixed_value<T,DefaultVal>::value
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* \endcode
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* that will give you \c N if T equals FixedInt<N> or FixedInt<N> (*)(), and \c DefaultVal if T does not embed any compile-time value (e.g., T==int).
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*
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* \sa fix<N>, class VariableAndFixedInt
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*/
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template<int N> class FixedInt
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{
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public:
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static const int value = N;
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EIGEN_CONSTEXPR operator int() const { return value; }
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FixedInt() {}
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FixedInt( VariableAndFixedInt<N> other) {
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#ifndef EIGEN_INTERNAL_DEBUGGING
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EIGEN_UNUSED_VARIABLE(other);
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#endif
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eigen_internal_assert(int(other)==N);
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}
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FixedInt<-N> operator-() const { return FixedInt<-N>(); }
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template<int M>
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FixedInt<N+M> operator+( FixedInt<M>) const { return FixedInt<N+M>(); }
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template<int M>
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FixedInt<N-M> operator-( FixedInt<M>) const { return FixedInt<N-M>(); }
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template<int M>
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FixedInt<N*M> operator*( FixedInt<M>) const { return FixedInt<N*M>(); }
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template<int M>
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FixedInt<N/M> operator/( FixedInt<M>) const { return FixedInt<N/M>(); }
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template<int M>
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FixedInt<N%M> operator%( FixedInt<M>) const { return FixedInt<N%M>(); }
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template<int M>
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FixedInt<N|M> operator|( FixedInt<M>) const { return FixedInt<N|M>(); }
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template<int M>
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FixedInt<N&M> operator&( FixedInt<M>) const { return FixedInt<N&M>(); }
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#if EIGEN_HAS_CXX14_VARIABLE_TEMPLATES
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// Needed in C++14 to allow fix<N>():
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FixedInt operator() () const { return *this; }
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VariableAndFixedInt<N> operator() (int val) const { return VariableAndFixedInt<N>(val); }
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#else
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FixedInt ( FixedInt<N> (*)() ) {}
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#endif
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#if EIGEN_HAS_CXX11
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FixedInt(std::integral_constant<int,N>) {}
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#endif
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};
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/** \internal
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* \class VariableAndFixedInt
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*
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* This class embeds both a compile-time integer \c N and a runtime integer.
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* Both values are supposed to be equal unless the compile-time value \c N has a special
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* value meaning that the runtime-value should be used. Depending on the context, this special
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* value can be either Eigen::Dynamic (for positive quantities) or Eigen::DynamicIndex (for
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* quantities that can be negative).
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*
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* It is the return-type of the function Eigen::fix<N>(int), and most of the time this is the only
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* way it is used. It is strongly discouraged to directly deal with instances of VariableAndFixedInt.
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* Indeed, in order to write generic code, it is the responsibility of the callee to properly convert
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* it to either a true compile-time quantity (i.e. a FixedInt<N>), or to a runtime quantity (e.g., an Index)
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* using the following generic helper:
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* \code
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* internal::cleanup_index_type<T>::type
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* internal::cleanup_index_type<T,DynamicKey>::type
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* \endcode
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* where T can be a template instantiation of VariableAndFixedInt or numerous other integer-like representations.
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* \c DynamicKey is either Dynamic (default) or DynamicIndex and used to identify true compile-time values.
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*
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* For convenience, you can also extract the compile-time value \c N using the following helper:
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* \code
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* internal::get_fixed_value<T,DefaultVal>::value
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* \endcode
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* that will give you \c N if T equals VariableAndFixedInt<N>, and \c DefaultVal if T does not embed any compile-time value (e.g., T==int).
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*
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* \sa fix<N>(int), class FixedInt
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*/
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template<int N> class VariableAndFixedInt
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{
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public:
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static const int value = N;
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operator int() const { return m_value; }
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VariableAndFixedInt(int val) { m_value = val; }
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protected:
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int m_value;
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};
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template<typename T, int Default=Dynamic> struct get_fixed_value {
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static const int value = Default;
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};
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template<int N,int Default> struct get_fixed_value<FixedInt<N>,Default> {
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static const int value = N;
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};
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#if !EIGEN_HAS_CXX14
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template<int N,int Default> struct get_fixed_value<FixedInt<N> (*)(),Default> {
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static const int value = N;
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};
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#endif
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template<int N,int Default> struct get_fixed_value<VariableAndFixedInt<N>,Default> {
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static const int value = N ;
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};
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template<typename T, int N, int Default>
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struct get_fixed_value<variable_if_dynamic<T,N>,Default> {
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static const int value = N;
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};
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template<typename T> EIGEN_DEVICE_FUNC Index get_runtime_value(const T &x) { return x; }
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#if !EIGEN_HAS_CXX14
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template<int N> EIGEN_DEVICE_FUNC Index get_runtime_value(FixedInt<N> (*)()) { return N; }
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#endif
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// Cleanup integer/FixedInt/VariableAndFixedInt/etc types:
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// By default, no cleanup:
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template<typename T, int DynamicKey=Dynamic, typename EnableIf=void> struct cleanup_index_type { typedef T type; };
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// Convert any integral type (e.g., short, int, unsigned int, etc.) to Eigen::Index
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template<typename T, int DynamicKey> struct cleanup_index_type<T,DynamicKey,typename internal::enable_if<internal::is_integral<T>::value>::type> { typedef Index type; };
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#if !EIGEN_HAS_CXX14
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// In c++98/c++11, fix<N> is a pointer to function that we better cleanup to a true FixedInt<N>:
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template<int N, int DynamicKey> struct cleanup_index_type<FixedInt<N> (*)(), DynamicKey> { typedef FixedInt<N> type; };
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#endif
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// If VariableAndFixedInt does not match DynamicKey, then we turn it to a pure compile-time value:
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template<int N, int DynamicKey> struct cleanup_index_type<VariableAndFixedInt<N>, DynamicKey> { typedef FixedInt<N> type; };
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// If VariableAndFixedInt matches DynamicKey, then we turn it to a pure runtime-value (aka Index):
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template<int DynamicKey> struct cleanup_index_type<VariableAndFixedInt<DynamicKey>, DynamicKey> { typedef Index type; };
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#if EIGEN_HAS_CXX11
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template<int N, int DynamicKey> struct cleanup_index_type<std::integral_constant<int,N>, DynamicKey> { typedef FixedInt<N> type; };
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#endif
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} // end namespace internal
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#ifndef EIGEN_PARSED_BY_DOXYGEN
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#if EIGEN_HAS_CXX14_VARIABLE_TEMPLATES
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template<int N>
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static const internal::FixedInt<N> fix{};
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#else
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template<int N>
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inline internal::FixedInt<N> fix() { return internal::FixedInt<N>(); }
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// The generic typename T is mandatory. Otherwise, a code like fix<N> could refer to either the function above or this next overload.
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// This way a code like fix<N> can only refer to the previous function.
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template<int N,typename T>
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inline internal::VariableAndFixedInt<N> fix(T val) { return internal::VariableAndFixedInt<N>(internal::convert_index<int>(val)); }
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#endif
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#else // EIGEN_PARSED_BY_DOXYGEN
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/** \var fix<N>()
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* \ingroup Core_Module
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*
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* This \em identifier permits to construct an object embedding a compile-time integer \c N.
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*
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* \tparam N the compile-time integer value
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*
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* It is typically used in conjunction with the Eigen::seq and Eigen::seqN functions to pass compile-time values to them:
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* \code
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* seqN(10,fix<4>,fix<-3>) // <=> [10 7 4 1]
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* \endcode
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*
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* See also the function fix(int) to pass both a compile-time and runtime value.
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*
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* In c++14, it is implemented as:
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* \code
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* template<int N> static const internal::FixedInt<N> fix{};
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* \endcode
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* where internal::FixedInt<N> is an internal template class similar to
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* <a href="http://en.cppreference.com/w/cpp/types/integral_constant">\c std::integral_constant </a><tt> <int,N> </tt>
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* Here, \c fix<N> is thus an object of type \c internal::FixedInt<N>.
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*
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* In c++98/11, it is implemented as a function:
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* \code
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* template<int N> inline internal::FixedInt<N> fix();
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* \endcode
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* Here internal::FixedInt<N> is thus a pointer to function.
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*
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* If for some reason you want a true object in c++98 then you can write: \code fix<N>() \endcode which is also valid in c++14.
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*
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* \sa fix<N>(int), seq, seqN
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*/
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template<int N>
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static const auto fix();
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/** \fn fix<N>(int)
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* \ingroup Core_Module
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*
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* This function returns an object embedding both a compile-time integer \c N, and a fallback runtime value \a val.
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*
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* \tparam N the compile-time integer value
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* \param val the fallback runtime integer value
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*
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* This function is a more general version of the \ref fix identifier/function that can be used in template code
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* where the compile-time value could turn out to actually mean "undefined at compile-time". For positive integers
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* such as a size or a dimension, this case is identified by Eigen::Dynamic, whereas runtime signed integers
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* (e.g., an increment/stride) are identified as Eigen::DynamicIndex. In such a case, the runtime value \a val
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* will be used as a fallback.
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*
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* A typical use case would be:
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* \code
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* template<typename Derived> void foo(const MatrixBase<Derived> &mat) {
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* const int N = Derived::RowsAtCompileTime==Dynamic ? Dynamic : Derived::RowsAtCompileTime/2;
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* const int n = mat.rows()/2;
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* ... mat( seqN(0,fix<N>(n) ) ...;
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* }
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* \endcode
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* In this example, the function Eigen::seqN knows that the second argument is expected to be a size.
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* If the passed compile-time value N equals Eigen::Dynamic, then the proxy object returned by fix will be dissmissed, and converted to an Eigen::Index of value \c n.
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* Otherwise, the runtime-value \c n will be dissmissed, and the returned ArithmeticSequence will be of the exact same type as <tt> seqN(0,fix<N>) </tt>.
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*
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* \sa fix, seqN, class ArithmeticSequence
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*/
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template<int N>
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static const auto fix(int val);
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#endif // EIGEN_PARSED_BY_DOXYGEN
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} // end namespace Eigen
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#endif // EIGEN_INTEGRAL_CONSTANT_H
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/*
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Copyright (c) 2011, Intel Corporation. All rights reserved.
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Redistribution and use in source and binary forms, with or without modification,
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are permitted provided that the following conditions are met:
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* Redistributions of source code must retain the above copyright notice, this
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list of conditions and the following disclaimer.
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* Redistributions in binary form must reproduce the above copyright notice,
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this list of conditions and the following disclaimer in the documentation
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and/or other materials provided with the distribution.
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* Neither the name of Intel Corporation nor the names of its contributors may
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be used to endorse or promote products derived from this software without
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specific prior written permission.
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
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ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
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WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
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ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
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(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
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LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
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ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
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SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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********************************************************************************
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* Content : Eigen bindings to Intel(R) MKL
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* Include file with common MKL declarations
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********************************************************************************
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*/
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#ifndef EIGEN_MKL_SUPPORT_H
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#define EIGEN_MKL_SUPPORT_H
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#ifdef EIGEN_USE_MKL_ALL
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#ifndef EIGEN_USE_BLAS
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#define EIGEN_USE_BLAS
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#endif
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#ifndef EIGEN_USE_LAPACKE
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#define EIGEN_USE_LAPACKE
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#endif
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#ifndef EIGEN_USE_MKL_VML
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#define EIGEN_USE_MKL_VML
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#endif
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#endif
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#ifdef EIGEN_USE_LAPACKE_STRICT
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#define EIGEN_USE_LAPACKE
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#endif
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#if defined(EIGEN_USE_MKL_VML) && !defined(EIGEN_USE_MKL)
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#define EIGEN_USE_MKL
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#endif
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#if defined EIGEN_USE_MKL
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# if (!defined MKL_DIRECT_CALL) && (!defined EIGEN_MKL_NO_DIRECT_CALL)
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# define MKL_DIRECT_CALL
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# define MKL_DIRECT_CALL_JUST_SET
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# endif
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# include <mkl.h>
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/*Check IMKL version for compatibility: < 10.3 is not usable with Eigen*/
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# ifndef INTEL_MKL_VERSION
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# undef EIGEN_USE_MKL /* INTEL_MKL_VERSION is not even defined on older versions */
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# elif INTEL_MKL_VERSION < 100305 /* the intel-mkl-103-release-notes say this was when the lapacke.h interface was added*/
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# undef EIGEN_USE_MKL
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# endif
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# ifndef EIGEN_USE_MKL
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/*If the MKL version is too old, undef everything*/
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# undef EIGEN_USE_MKL_ALL
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# undef EIGEN_USE_LAPACKE
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# undef EIGEN_USE_MKL_VML
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# undef EIGEN_USE_LAPACKE_STRICT
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# undef EIGEN_USE_LAPACKE
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# ifdef MKL_DIRECT_CALL_JUST_SET
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# undef MKL_DIRECT_CALL
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# endif
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# endif
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#endif
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#if defined EIGEN_USE_MKL
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#define EIGEN_MKL_VML_THRESHOLD 128
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/* MKL_DOMAIN_BLAS, etc are defined only in 10.3 update 7 */
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/* MKL_BLAS, etc are not defined in 11.2 */
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#ifdef MKL_DOMAIN_ALL
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#define EIGEN_MKL_DOMAIN_ALL MKL_DOMAIN_ALL
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#else
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#define EIGEN_MKL_DOMAIN_ALL MKL_ALL
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#endif
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#ifdef MKL_DOMAIN_BLAS
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#define EIGEN_MKL_DOMAIN_BLAS MKL_DOMAIN_BLAS
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#else
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#define EIGEN_MKL_DOMAIN_BLAS MKL_BLAS
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#endif
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#ifdef MKL_DOMAIN_FFT
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#define EIGEN_MKL_DOMAIN_FFT MKL_DOMAIN_FFT
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#else
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#define EIGEN_MKL_DOMAIN_FFT MKL_FFT
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#endif
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#ifdef MKL_DOMAIN_VML
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#define EIGEN_MKL_DOMAIN_VML MKL_DOMAIN_VML
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#else
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#define EIGEN_MKL_DOMAIN_VML MKL_VML
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#endif
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#ifdef MKL_DOMAIN_PARDISO
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#define EIGEN_MKL_DOMAIN_PARDISO MKL_DOMAIN_PARDISO
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#else
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#define EIGEN_MKL_DOMAIN_PARDISO MKL_PARDISO
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#endif
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#endif
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#if defined(EIGEN_USE_BLAS) && !defined(EIGEN_USE_MKL)
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#include "../../misc/blas.h"
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#endif
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namespace Eigen {
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typedef std::complex<double> dcomplex;
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typedef std::complex<float> scomplex;
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#if defined(EIGEN_USE_MKL)
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typedef MKL_INT BlasIndex;
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#else
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typedef int BlasIndex;
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#endif
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} // end namespace Eigen
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#endif // EIGEN_MKL_SUPPORT_H
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