umappp 0.1.2

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Files changed (395) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +25 -0
  3. data/README.md +110 -0
  4. data/ext/umappp/extconf.rb +25 -0
  5. data/ext/umappp/numo.hpp +867 -0
  6. data/ext/umappp/umappp.cpp +225 -0
  7. data/lib/umappp/version.rb +5 -0
  8. data/lib/umappp.rb +41 -0
  9. data/vendor/Eigen/Cholesky +45 -0
  10. data/vendor/Eigen/CholmodSupport +48 -0
  11. data/vendor/Eigen/Core +384 -0
  12. data/vendor/Eigen/Dense +7 -0
  13. data/vendor/Eigen/Eigen +2 -0
  14. data/vendor/Eigen/Eigenvalues +60 -0
  15. data/vendor/Eigen/Geometry +59 -0
  16. data/vendor/Eigen/Householder +29 -0
  17. data/vendor/Eigen/IterativeLinearSolvers +48 -0
  18. data/vendor/Eigen/Jacobi +32 -0
  19. data/vendor/Eigen/KLUSupport +41 -0
  20. data/vendor/Eigen/LU +47 -0
  21. data/vendor/Eigen/MetisSupport +35 -0
  22. data/vendor/Eigen/OrderingMethods +70 -0
  23. data/vendor/Eigen/PaStiXSupport +49 -0
  24. data/vendor/Eigen/PardisoSupport +35 -0
  25. data/vendor/Eigen/QR +50 -0
  26. data/vendor/Eigen/QtAlignedMalloc +39 -0
  27. data/vendor/Eigen/SPQRSupport +34 -0
  28. data/vendor/Eigen/SVD +50 -0
  29. data/vendor/Eigen/Sparse +34 -0
  30. data/vendor/Eigen/SparseCholesky +37 -0
  31. data/vendor/Eigen/SparseCore +69 -0
  32. data/vendor/Eigen/SparseLU +50 -0
  33. data/vendor/Eigen/SparseQR +36 -0
  34. data/vendor/Eigen/StdDeque +27 -0
  35. data/vendor/Eigen/StdList +26 -0
  36. data/vendor/Eigen/StdVector +27 -0
  37. data/vendor/Eigen/SuperLUSupport +64 -0
  38. data/vendor/Eigen/UmfPackSupport +40 -0
  39. data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
  40. data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
  41. data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  42. data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
  43. data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
  44. data/vendor/Eigen/src/Core/Array.h +417 -0
  45. data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
  46. data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
  47. data/vendor/Eigen/src/Core/Assign.h +90 -0
  48. data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
  49. data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
  50. data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
  51. data/vendor/Eigen/src/Core/Block.h +448 -0
  52. data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
  53. data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
  54. data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
  55. data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
  56. data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
  57. data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
  58. data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
  59. data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  60. data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  61. data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
  62. data/vendor/Eigen/src/Core/DenseBase.h +701 -0
  63. data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
  64. data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
  65. data/vendor/Eigen/src/Core/Diagonal.h +258 -0
  66. data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
  67. data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
  68. data/vendor/Eigen/src/Core/Dot.h +318 -0
  69. data/vendor/Eigen/src/Core/EigenBase.h +160 -0
  70. data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
  71. data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
  72. data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
  73. data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
  74. data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
  75. data/vendor/Eigen/src/Core/IO.h +258 -0
  76. data/vendor/Eigen/src/Core/IndexedView.h +237 -0
  77. data/vendor/Eigen/src/Core/Inverse.h +117 -0
  78. data/vendor/Eigen/src/Core/Map.h +171 -0
  79. data/vendor/Eigen/src/Core/MapBase.h +310 -0
  80. data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
  81. data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
  82. data/vendor/Eigen/src/Core/Matrix.h +565 -0
  83. data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
  84. data/vendor/Eigen/src/Core/NestByValue.h +85 -0
  85. data/vendor/Eigen/src/Core/NoAlias.h +109 -0
  86. data/vendor/Eigen/src/Core/NumTraits.h +335 -0
  87. data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  88. data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
  89. data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
  90. data/vendor/Eigen/src/Core/Product.h +191 -0
  91. data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
  92. data/vendor/Eigen/src/Core/Random.h +218 -0
  93. data/vendor/Eigen/src/Core/Redux.h +515 -0
  94. data/vendor/Eigen/src/Core/Ref.h +381 -0
  95. data/vendor/Eigen/src/Core/Replicate.h +142 -0
  96. data/vendor/Eigen/src/Core/Reshaped.h +454 -0
  97. data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
  98. data/vendor/Eigen/src/Core/Reverse.h +217 -0
  99. data/vendor/Eigen/src/Core/Select.h +164 -0
  100. data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
  101. data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  102. data/vendor/Eigen/src/Core/Solve.h +188 -0
  103. data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
  104. data/vendor/Eigen/src/Core/SolverBase.h +168 -0
  105. data/vendor/Eigen/src/Core/StableNorm.h +251 -0
  106. data/vendor/Eigen/src/Core/StlIterators.h +463 -0
  107. data/vendor/Eigen/src/Core/Stride.h +116 -0
  108. data/vendor/Eigen/src/Core/Swap.h +68 -0
  109. data/vendor/Eigen/src/Core/Transpose.h +464 -0
  110. data/vendor/Eigen/src/Core/Transpositions.h +386 -0
  111. data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
  112. data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
  113. data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
  114. data/vendor/Eigen/src/Core/Visitor.h +381 -0
  115. data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
  116. data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
  117. data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
  118. data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
  119. data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  120. data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
  121. data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
  122. data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  123. data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
  124. data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
  125. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  126. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  127. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  128. data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
  129. data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
  130. data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  131. data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
  132. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  133. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  134. data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
  135. data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
  136. data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  137. data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
  138. data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  139. data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  140. data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  141. data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  142. data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  143. data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  144. data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
  145. data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  146. data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
  147. data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
  148. data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  149. data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
  150. data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
  151. data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
  152. data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
  153. data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  154. data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  155. data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  156. data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  157. data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  158. data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  159. data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  160. data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  161. data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
  162. data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
  163. data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
  164. data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
  165. data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
  166. data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
  167. data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
  168. data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  169. data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
  170. data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
  171. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
  172. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
  173. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  174. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
  175. data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
  176. data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  177. data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
  178. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
  179. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
  180. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
  181. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  182. data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  183. data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
  184. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
  185. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
  186. data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  187. data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  188. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
  189. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
  190. data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
  191. data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
  192. data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  193. data/vendor/Eigen/src/Core/util/Constants.h +563 -0
  194. data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
  195. data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
  196. data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  197. data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
  198. data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
  199. data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
  200. data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
  201. data/vendor/Eigen/src/Core/util/Meta.h +812 -0
  202. data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
  203. data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
  204. data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  205. data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
  206. data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  207. data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
  208. data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  209. data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
  210. data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  211. data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  212. data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  213. data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  214. data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  215. data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  216. data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
  217. data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
  218. data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  219. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
  220. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  221. data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
  222. data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
  223. data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
  224. data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
  225. data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
  226. data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
  227. data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
  228. data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
  229. data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
  230. data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
  231. data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
  232. data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
  233. data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
  234. data/vendor/Eigen/src/Geometry/Translation.h +202 -0
  235. data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
  236. data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  237. data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
  238. data/vendor/Eigen/src/Householder/Householder.h +176 -0
  239. data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
  240. data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  241. data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
  242. data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
  243. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
  244. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
  245. data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
  246. data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
  247. data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
  248. data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
  249. data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  250. data/vendor/Eigen/src/LU/Determinant.h +117 -0
  251. data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
  252. data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
  253. data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
  254. data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  255. data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
  256. data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  257. data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
  258. data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
  259. data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
  260. data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  261. data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
  262. data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
  263. data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  264. data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
  265. data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
  266. data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
  267. data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  268. data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
  269. data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
  270. data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
  271. data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  272. data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
  273. data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  274. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
  275. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
  276. data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
  277. data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
  278. data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  279. data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  280. data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
  281. data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
  282. data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  283. data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
  284. data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
  285. data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
  286. data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
  287. data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  288. data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
  289. data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  290. data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
  291. data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
  292. data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
  293. data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  294. data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
  295. data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
  296. data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
  297. data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
  298. data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  299. data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  300. data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  301. data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  302. data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
  303. data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
  304. data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
  305. data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  306. data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
  307. data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  308. data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  309. data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  310. data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
  311. data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  312. data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  313. data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  314. data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  315. data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  316. data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  317. data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  318. data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  319. data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  320. data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  321. data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  322. data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  323. data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
  324. data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
  325. data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
  326. data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
  327. data/vendor/Eigen/src/StlSupport/details.h +84 -0
  328. data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
  329. data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
  330. data/vendor/Eigen/src/misc/Image.h +82 -0
  331. data/vendor/Eigen/src/misc/Kernel.h +79 -0
  332. data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
  333. data/vendor/Eigen/src/misc/blas.h +440 -0
  334. data/vendor/Eigen/src/misc/lapack.h +152 -0
  335. data/vendor/Eigen/src/misc/lapacke.h +16292 -0
  336. data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
  337. data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
  338. data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
  339. data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
  340. data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  341. data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
  342. data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  343. data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  344. data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
  345. data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
  346. data/vendor/aarand/aarand.hpp +114 -0
  347. data/vendor/annoy/annoylib.h +1495 -0
  348. data/vendor/annoy/kissrandom.h +120 -0
  349. data/vendor/annoy/mman.h +242 -0
  350. data/vendor/hnswlib/bruteforce.h +152 -0
  351. data/vendor/hnswlib/hnswalg.h +1192 -0
  352. data/vendor/hnswlib/hnswlib.h +108 -0
  353. data/vendor/hnswlib/space_ip.h +282 -0
  354. data/vendor/hnswlib/space_l2.h +281 -0
  355. data/vendor/hnswlib/visited_list_pool.h +79 -0
  356. data/vendor/irlba/irlba.hpp +575 -0
  357. data/vendor/irlba/lanczos.hpp +212 -0
  358. data/vendor/irlba/parallel.hpp +474 -0
  359. data/vendor/irlba/utils.hpp +224 -0
  360. data/vendor/irlba/wrappers.hpp +228 -0
  361. data/vendor/kmeans/Base.hpp +75 -0
  362. data/vendor/kmeans/Details.hpp +79 -0
  363. data/vendor/kmeans/HartiganWong.hpp +492 -0
  364. data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
  365. data/vendor/kmeans/InitializeNone.hpp +44 -0
  366. data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
  367. data/vendor/kmeans/InitializeRandom.hpp +91 -0
  368. data/vendor/kmeans/Kmeans.hpp +161 -0
  369. data/vendor/kmeans/Lloyd.hpp +134 -0
  370. data/vendor/kmeans/MiniBatch.hpp +269 -0
  371. data/vendor/kmeans/QuickSearch.hpp +179 -0
  372. data/vendor/kmeans/compute_centroids.hpp +32 -0
  373. data/vendor/kmeans/compute_wcss.hpp +27 -0
  374. data/vendor/kmeans/is_edge_case.hpp +42 -0
  375. data/vendor/kmeans/random.hpp +55 -0
  376. data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
  377. data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
  378. data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
  379. data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
  380. data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
  381. data/vendor/knncolle/knncolle.hpp +34 -0
  382. data/vendor/knncolle/utils/Base.hpp +100 -0
  383. data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
  384. data/vendor/knncolle/utils/distances.hpp +98 -0
  385. data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
  386. data/vendor/powerit/PowerIterations.hpp +157 -0
  387. data/vendor/umappp/NeighborList.hpp +37 -0
  388. data/vendor/umappp/Umap.hpp +662 -0
  389. data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
  390. data/vendor/umappp/find_ab.hpp +157 -0
  391. data/vendor/umappp/neighbor_similarities.hpp +136 -0
  392. data/vendor/umappp/optimize_layout.hpp +285 -0
  393. data/vendor/umappp/spectral_init.hpp +181 -0
  394. data/vendor/umappp/umappp.hpp +13 -0
  395. metadata +465 -0
@@ -0,0 +1,642 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008-2011 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_UMFPACKSUPPORT_H
11
+ #define EIGEN_UMFPACKSUPPORT_H
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+
13
+ // for compatibility with super old version of umfpack,
14
+ // not sure this is really needed, but this is harmless.
15
+ #ifndef SuiteSparse_long
16
+ #ifdef UF_long
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+ #define SuiteSparse_long UF_long
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+ #else
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+ #error neither SuiteSparse_long nor UF_long are defined
20
+ #endif
21
+ #endif
22
+
23
+ namespace Eigen {
24
+
25
+ /* TODO extract L, extract U, compute det, etc... */
26
+
27
+ // generic double/complex<double> wrapper functions:
28
+
29
+
30
+ // Defaults
31
+ inline void umfpack_defaults(double control[UMFPACK_CONTROL], double, int)
32
+ { umfpack_di_defaults(control); }
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+
34
+ inline void umfpack_defaults(double control[UMFPACK_CONTROL], std::complex<double>, int)
35
+ { umfpack_zi_defaults(control); }
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+
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+ inline void umfpack_defaults(double control[UMFPACK_CONTROL], double, SuiteSparse_long)
38
+ { umfpack_dl_defaults(control); }
39
+
40
+ inline void umfpack_defaults(double control[UMFPACK_CONTROL], std::complex<double>, SuiteSparse_long)
41
+ { umfpack_zl_defaults(control); }
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+
43
+ // Report info
44
+ inline void umfpack_report_info(double control[UMFPACK_CONTROL], double info[UMFPACK_INFO], double, int)
45
+ { umfpack_di_report_info(control, info);}
46
+
47
+ inline void umfpack_report_info(double control[UMFPACK_CONTROL], double info[UMFPACK_INFO], std::complex<double>, int)
48
+ { umfpack_zi_report_info(control, info);}
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+
50
+ inline void umfpack_report_info(double control[UMFPACK_CONTROL], double info[UMFPACK_INFO], double, SuiteSparse_long)
51
+ { umfpack_dl_report_info(control, info);}
52
+
53
+ inline void umfpack_report_info(double control[UMFPACK_CONTROL], double info[UMFPACK_INFO], std::complex<double>, SuiteSparse_long)
54
+ { umfpack_zl_report_info(control, info);}
55
+
56
+ // Report status
57
+ inline void umfpack_report_status(double control[UMFPACK_CONTROL], int status, double, int)
58
+ { umfpack_di_report_status(control, status);}
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+
60
+ inline void umfpack_report_status(double control[UMFPACK_CONTROL], int status, std::complex<double>, int)
61
+ { umfpack_zi_report_status(control, status);}
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+
63
+ inline void umfpack_report_status(double control[UMFPACK_CONTROL], int status, double, SuiteSparse_long)
64
+ { umfpack_dl_report_status(control, status);}
65
+
66
+ inline void umfpack_report_status(double control[UMFPACK_CONTROL], int status, std::complex<double>, SuiteSparse_long)
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+ { umfpack_zl_report_status(control, status);}
68
+
69
+ // report control
70
+ inline void umfpack_report_control(double control[UMFPACK_CONTROL], double, int)
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+ { umfpack_di_report_control(control);}
72
+
73
+ inline void umfpack_report_control(double control[UMFPACK_CONTROL], std::complex<double>, int)
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+ { umfpack_zi_report_control(control);}
75
+
76
+ inline void umfpack_report_control(double control[UMFPACK_CONTROL], double, SuiteSparse_long)
77
+ { umfpack_dl_report_control(control);}
78
+
79
+ inline void umfpack_report_control(double control[UMFPACK_CONTROL], std::complex<double>, SuiteSparse_long)
80
+ { umfpack_zl_report_control(control);}
81
+
82
+ // Free numeric
83
+ inline void umfpack_free_numeric(void **Numeric, double, int)
84
+ { umfpack_di_free_numeric(Numeric); *Numeric = 0; }
85
+
86
+ inline void umfpack_free_numeric(void **Numeric, std::complex<double>, int)
87
+ { umfpack_zi_free_numeric(Numeric); *Numeric = 0; }
88
+
89
+ inline void umfpack_free_numeric(void **Numeric, double, SuiteSparse_long)
90
+ { umfpack_dl_free_numeric(Numeric); *Numeric = 0; }
91
+
92
+ inline void umfpack_free_numeric(void **Numeric, std::complex<double>, SuiteSparse_long)
93
+ { umfpack_zl_free_numeric(Numeric); *Numeric = 0; }
94
+
95
+ // Free symbolic
96
+ inline void umfpack_free_symbolic(void **Symbolic, double, int)
97
+ { umfpack_di_free_symbolic(Symbolic); *Symbolic = 0; }
98
+
99
+ inline void umfpack_free_symbolic(void **Symbolic, std::complex<double>, int)
100
+ { umfpack_zi_free_symbolic(Symbolic); *Symbolic = 0; }
101
+
102
+ inline void umfpack_free_symbolic(void **Symbolic, double, SuiteSparse_long)
103
+ { umfpack_dl_free_symbolic(Symbolic); *Symbolic = 0; }
104
+
105
+ inline void umfpack_free_symbolic(void **Symbolic, std::complex<double>, SuiteSparse_long)
106
+ { umfpack_zl_free_symbolic(Symbolic); *Symbolic = 0; }
107
+
108
+ // Symbolic
109
+ inline int umfpack_symbolic(int n_row,int n_col,
110
+ const int Ap[], const int Ai[], const double Ax[], void **Symbolic,
111
+ const double Control [UMFPACK_CONTROL], double Info [UMFPACK_INFO])
112
+ {
113
+ return umfpack_di_symbolic(n_row,n_col,Ap,Ai,Ax,Symbolic,Control,Info);
114
+ }
115
+
116
+ inline int umfpack_symbolic(int n_row,int n_col,
117
+ const int Ap[], const int Ai[], const std::complex<double> Ax[], void **Symbolic,
118
+ const double Control [UMFPACK_CONTROL], double Info [UMFPACK_INFO])
119
+ {
120
+ return umfpack_zi_symbolic(n_row,n_col,Ap,Ai,&numext::real_ref(Ax[0]),0,Symbolic,Control,Info);
121
+ }
122
+ inline SuiteSparse_long umfpack_symbolic( SuiteSparse_long n_row,SuiteSparse_long n_col,
123
+ const SuiteSparse_long Ap[], const SuiteSparse_long Ai[], const double Ax[], void **Symbolic,
124
+ const double Control [UMFPACK_CONTROL], double Info [UMFPACK_INFO])
125
+ {
126
+ return umfpack_dl_symbolic(n_row,n_col,Ap,Ai,Ax,Symbolic,Control,Info);
127
+ }
128
+
129
+ inline SuiteSparse_long umfpack_symbolic( SuiteSparse_long n_row,SuiteSparse_long n_col,
130
+ const SuiteSparse_long Ap[], const SuiteSparse_long Ai[], const std::complex<double> Ax[], void **Symbolic,
131
+ const double Control [UMFPACK_CONTROL], double Info [UMFPACK_INFO])
132
+ {
133
+ return umfpack_zl_symbolic(n_row,n_col,Ap,Ai,&numext::real_ref(Ax[0]),0,Symbolic,Control,Info);
134
+ }
135
+
136
+ // Numeric
137
+ inline int umfpack_numeric( const int Ap[], const int Ai[], const double Ax[],
138
+ void *Symbolic, void **Numeric,
139
+ const double Control[UMFPACK_CONTROL],double Info [UMFPACK_INFO])
140
+ {
141
+ return umfpack_di_numeric(Ap,Ai,Ax,Symbolic,Numeric,Control,Info);
142
+ }
143
+
144
+ inline int umfpack_numeric( const int Ap[], const int Ai[], const std::complex<double> Ax[],
145
+ void *Symbolic, void **Numeric,
146
+ const double Control[UMFPACK_CONTROL],double Info [UMFPACK_INFO])
147
+ {
148
+ return umfpack_zi_numeric(Ap,Ai,&numext::real_ref(Ax[0]),0,Symbolic,Numeric,Control,Info);
149
+ }
150
+ inline SuiteSparse_long umfpack_numeric(const SuiteSparse_long Ap[], const SuiteSparse_long Ai[], const double Ax[],
151
+ void *Symbolic, void **Numeric,
152
+ const double Control[UMFPACK_CONTROL],double Info [UMFPACK_INFO])
153
+ {
154
+ return umfpack_dl_numeric(Ap,Ai,Ax,Symbolic,Numeric,Control,Info);
155
+ }
156
+
157
+ inline SuiteSparse_long umfpack_numeric(const SuiteSparse_long Ap[], const SuiteSparse_long Ai[], const std::complex<double> Ax[],
158
+ void *Symbolic, void **Numeric,
159
+ const double Control[UMFPACK_CONTROL],double Info [UMFPACK_INFO])
160
+ {
161
+ return umfpack_zl_numeric(Ap,Ai,&numext::real_ref(Ax[0]),0,Symbolic,Numeric,Control,Info);
162
+ }
163
+
164
+ // solve
165
+ inline int umfpack_solve( int sys, const int Ap[], const int Ai[], const double Ax[],
166
+ double X[], const double B[], void *Numeric,
167
+ const double Control[UMFPACK_CONTROL], double Info[UMFPACK_INFO])
168
+ {
169
+ return umfpack_di_solve(sys,Ap,Ai,Ax,X,B,Numeric,Control,Info);
170
+ }
171
+
172
+ inline int umfpack_solve( int sys, const int Ap[], const int Ai[], const std::complex<double> Ax[],
173
+ std::complex<double> X[], const std::complex<double> B[], void *Numeric,
174
+ const double Control[UMFPACK_CONTROL], double Info[UMFPACK_INFO])
175
+ {
176
+ return umfpack_zi_solve(sys,Ap,Ai,&numext::real_ref(Ax[0]),0,&numext::real_ref(X[0]),0,&numext::real_ref(B[0]),0,Numeric,Control,Info);
177
+ }
178
+
179
+ inline SuiteSparse_long umfpack_solve(int sys, const SuiteSparse_long Ap[], const SuiteSparse_long Ai[], const double Ax[],
180
+ double X[], const double B[], void *Numeric,
181
+ const double Control[UMFPACK_CONTROL], double Info[UMFPACK_INFO])
182
+ {
183
+ return umfpack_dl_solve(sys,Ap,Ai,Ax,X,B,Numeric,Control,Info);
184
+ }
185
+
186
+ inline SuiteSparse_long umfpack_solve(int sys, const SuiteSparse_long Ap[], const SuiteSparse_long Ai[], const std::complex<double> Ax[],
187
+ std::complex<double> X[], const std::complex<double> B[], void *Numeric,
188
+ const double Control[UMFPACK_CONTROL], double Info[UMFPACK_INFO])
189
+ {
190
+ return umfpack_zl_solve(sys,Ap,Ai,&numext::real_ref(Ax[0]),0,&numext::real_ref(X[0]),0,&numext::real_ref(B[0]),0,Numeric,Control,Info);
191
+ }
192
+
193
+ // Get Lunz
194
+ inline int umfpack_get_lunz(int *lnz, int *unz, int *n_row, int *n_col, int *nz_udiag, void *Numeric, double)
195
+ {
196
+ return umfpack_di_get_lunz(lnz,unz,n_row,n_col,nz_udiag,Numeric);
197
+ }
198
+
199
+ inline int umfpack_get_lunz(int *lnz, int *unz, int *n_row, int *n_col, int *nz_udiag, void *Numeric, std::complex<double>)
200
+ {
201
+ return umfpack_zi_get_lunz(lnz,unz,n_row,n_col,nz_udiag,Numeric);
202
+ }
203
+
204
+ inline SuiteSparse_long umfpack_get_lunz( SuiteSparse_long *lnz, SuiteSparse_long *unz, SuiteSparse_long *n_row, SuiteSparse_long *n_col,
205
+ SuiteSparse_long *nz_udiag, void *Numeric, double)
206
+ {
207
+ return umfpack_dl_get_lunz(lnz,unz,n_row,n_col,nz_udiag,Numeric);
208
+ }
209
+
210
+ inline SuiteSparse_long umfpack_get_lunz( SuiteSparse_long *lnz, SuiteSparse_long *unz, SuiteSparse_long *n_row, SuiteSparse_long *n_col,
211
+ SuiteSparse_long *nz_udiag, void *Numeric, std::complex<double>)
212
+ {
213
+ return umfpack_zl_get_lunz(lnz,unz,n_row,n_col,nz_udiag,Numeric);
214
+ }
215
+
216
+ // Get Numeric
217
+ inline int umfpack_get_numeric(int Lp[], int Lj[], double Lx[], int Up[], int Ui[], double Ux[],
218
+ int P[], int Q[], double Dx[], int *do_recip, double Rs[], void *Numeric)
219
+ {
220
+ return umfpack_di_get_numeric(Lp,Lj,Lx,Up,Ui,Ux,P,Q,Dx,do_recip,Rs,Numeric);
221
+ }
222
+
223
+ inline int umfpack_get_numeric(int Lp[], int Lj[], std::complex<double> Lx[], int Up[], int Ui[], std::complex<double> Ux[],
224
+ int P[], int Q[], std::complex<double> Dx[], int *do_recip, double Rs[], void *Numeric)
225
+ {
226
+ double& lx0_real = numext::real_ref(Lx[0]);
227
+ double& ux0_real = numext::real_ref(Ux[0]);
228
+ double& dx0_real = numext::real_ref(Dx[0]);
229
+ return umfpack_zi_get_numeric(Lp,Lj,Lx?&lx0_real:0,0,Up,Ui,Ux?&ux0_real:0,0,P,Q,
230
+ Dx?&dx0_real:0,0,do_recip,Rs,Numeric);
231
+ }
232
+ inline SuiteSparse_long umfpack_get_numeric(SuiteSparse_long Lp[], SuiteSparse_long Lj[], double Lx[], SuiteSparse_long Up[], SuiteSparse_long Ui[], double Ux[],
233
+ SuiteSparse_long P[], SuiteSparse_long Q[], double Dx[], SuiteSparse_long *do_recip, double Rs[], void *Numeric)
234
+ {
235
+ return umfpack_dl_get_numeric(Lp,Lj,Lx,Up,Ui,Ux,P,Q,Dx,do_recip,Rs,Numeric);
236
+ }
237
+
238
+ inline SuiteSparse_long umfpack_get_numeric(SuiteSparse_long Lp[], SuiteSparse_long Lj[], std::complex<double> Lx[], SuiteSparse_long Up[], SuiteSparse_long Ui[], std::complex<double> Ux[],
239
+ SuiteSparse_long P[], SuiteSparse_long Q[], std::complex<double> Dx[], SuiteSparse_long *do_recip, double Rs[], void *Numeric)
240
+ {
241
+ double& lx0_real = numext::real_ref(Lx[0]);
242
+ double& ux0_real = numext::real_ref(Ux[0]);
243
+ double& dx0_real = numext::real_ref(Dx[0]);
244
+ return umfpack_zl_get_numeric(Lp,Lj,Lx?&lx0_real:0,0,Up,Ui,Ux?&ux0_real:0,0,P,Q,
245
+ Dx?&dx0_real:0,0,do_recip,Rs,Numeric);
246
+ }
247
+
248
+ // Get Determinant
249
+ inline int umfpack_get_determinant(double *Mx, double *Ex, void *NumericHandle, double User_Info [UMFPACK_INFO], int)
250
+ {
251
+ return umfpack_di_get_determinant(Mx,Ex,NumericHandle,User_Info);
252
+ }
253
+
254
+ inline int umfpack_get_determinant(std::complex<double> *Mx, double *Ex, void *NumericHandle, double User_Info [UMFPACK_INFO], int)
255
+ {
256
+ double& mx_real = numext::real_ref(*Mx);
257
+ return umfpack_zi_get_determinant(&mx_real,0,Ex,NumericHandle,User_Info);
258
+ }
259
+
260
+ inline SuiteSparse_long umfpack_get_determinant(double *Mx, double *Ex, void *NumericHandle, double User_Info [UMFPACK_INFO], SuiteSparse_long)
261
+ {
262
+ return umfpack_dl_get_determinant(Mx,Ex,NumericHandle,User_Info);
263
+ }
264
+
265
+ inline SuiteSparse_long umfpack_get_determinant(std::complex<double> *Mx, double *Ex, void *NumericHandle, double User_Info [UMFPACK_INFO], SuiteSparse_long)
266
+ {
267
+ double& mx_real = numext::real_ref(*Mx);
268
+ return umfpack_zl_get_determinant(&mx_real,0,Ex,NumericHandle,User_Info);
269
+ }
270
+
271
+
272
+ /** \ingroup UmfPackSupport_Module
273
+ * \brief A sparse LU factorization and solver based on UmfPack
274
+ *
275
+ * This class allows to solve for A.X = B sparse linear problems via a LU factorization
276
+ * using the UmfPack library. The sparse matrix A must be squared and full rank.
277
+ * The vectors or matrices X and B can be either dense or sparse.
278
+ *
279
+ * \warning The input matrix A should be in a \b compressed and \b column-major form.
280
+ * Otherwise an expensive copy will be made. You can call the inexpensive makeCompressed() to get a compressed matrix.
281
+ * \tparam _MatrixType the type of the sparse matrix A, it must be a SparseMatrix<>
282
+ *
283
+ * \implsparsesolverconcept
284
+ *
285
+ * \sa \ref TutorialSparseSolverConcept, class SparseLU
286
+ */
287
+ template<typename _MatrixType>
288
+ class UmfPackLU : public SparseSolverBase<UmfPackLU<_MatrixType> >
289
+ {
290
+ protected:
291
+ typedef SparseSolverBase<UmfPackLU<_MatrixType> > Base;
292
+ using Base::m_isInitialized;
293
+ public:
294
+ using Base::_solve_impl;
295
+ typedef _MatrixType MatrixType;
296
+ typedef typename MatrixType::Scalar Scalar;
297
+ typedef typename MatrixType::RealScalar RealScalar;
298
+ typedef typename MatrixType::StorageIndex StorageIndex;
299
+ typedef Matrix<Scalar,Dynamic,1> Vector;
300
+ typedef Matrix<int, 1, MatrixType::ColsAtCompileTime> IntRowVectorType;
301
+ typedef Matrix<int, MatrixType::RowsAtCompileTime, 1> IntColVectorType;
302
+ typedef SparseMatrix<Scalar> LUMatrixType;
303
+ typedef SparseMatrix<Scalar,ColMajor,StorageIndex> UmfpackMatrixType;
304
+ typedef Ref<const UmfpackMatrixType, StandardCompressedFormat> UmfpackMatrixRef;
305
+ enum {
306
+ ColsAtCompileTime = MatrixType::ColsAtCompileTime,
307
+ MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime
308
+ };
309
+
310
+ public:
311
+
312
+ typedef Array<double, UMFPACK_CONTROL, 1> UmfpackControl;
313
+ typedef Array<double, UMFPACK_INFO, 1> UmfpackInfo;
314
+
315
+ UmfPackLU()
316
+ : m_dummy(0,0), mp_matrix(m_dummy)
317
+ {
318
+ init();
319
+ }
320
+
321
+ template<typename InputMatrixType>
322
+ explicit UmfPackLU(const InputMatrixType& matrix)
323
+ : mp_matrix(matrix)
324
+ {
325
+ init();
326
+ compute(matrix);
327
+ }
328
+
329
+ ~UmfPackLU()
330
+ {
331
+ if(m_symbolic) umfpack_free_symbolic(&m_symbolic,Scalar(), StorageIndex());
332
+ if(m_numeric) umfpack_free_numeric(&m_numeric,Scalar(), StorageIndex());
333
+ }
334
+
335
+ inline Index rows() const { return mp_matrix.rows(); }
336
+ inline Index cols() const { return mp_matrix.cols(); }
337
+
338
+ /** \brief Reports whether previous computation was successful.
339
+ *
340
+ * \returns \c Success if computation was successful,
341
+ * \c NumericalIssue if the matrix.appears to be negative.
342
+ */
343
+ ComputationInfo info() const
344
+ {
345
+ eigen_assert(m_isInitialized && "Decomposition is not initialized.");
346
+ return m_info;
347
+ }
348
+
349
+ inline const LUMatrixType& matrixL() const
350
+ {
351
+ if (m_extractedDataAreDirty) extractData();
352
+ return m_l;
353
+ }
354
+
355
+ inline const LUMatrixType& matrixU() const
356
+ {
357
+ if (m_extractedDataAreDirty) extractData();
358
+ return m_u;
359
+ }
360
+
361
+ inline const IntColVectorType& permutationP() const
362
+ {
363
+ if (m_extractedDataAreDirty) extractData();
364
+ return m_p;
365
+ }
366
+
367
+ inline const IntRowVectorType& permutationQ() const
368
+ {
369
+ if (m_extractedDataAreDirty) extractData();
370
+ return m_q;
371
+ }
372
+
373
+ /** Computes the sparse Cholesky decomposition of \a matrix
374
+ * Note that the matrix should be column-major, and in compressed format for best performance.
375
+ * \sa SparseMatrix::makeCompressed().
376
+ */
377
+ template<typename InputMatrixType>
378
+ void compute(const InputMatrixType& matrix)
379
+ {
380
+ if(m_symbolic) umfpack_free_symbolic(&m_symbolic,Scalar(),StorageIndex());
381
+ if(m_numeric) umfpack_free_numeric(&m_numeric,Scalar(),StorageIndex());
382
+ grab(matrix.derived());
383
+ analyzePattern_impl();
384
+ factorize_impl();
385
+ }
386
+
387
+ /** Performs a symbolic decomposition on the sparcity of \a matrix.
388
+ *
389
+ * This function is particularly useful when solving for several problems having the same structure.
390
+ *
391
+ * \sa factorize(), compute()
392
+ */
393
+ template<typename InputMatrixType>
394
+ void analyzePattern(const InputMatrixType& matrix)
395
+ {
396
+ if(m_symbolic) umfpack_free_symbolic(&m_symbolic,Scalar(),StorageIndex());
397
+ if(m_numeric) umfpack_free_numeric(&m_numeric,Scalar(),StorageIndex());
398
+
399
+ grab(matrix.derived());
400
+
401
+ analyzePattern_impl();
402
+ }
403
+
404
+ /** Provides the return status code returned by UmfPack during the numeric
405
+ * factorization.
406
+ *
407
+ * \sa factorize(), compute()
408
+ */
409
+ inline int umfpackFactorizeReturncode() const
410
+ {
411
+ eigen_assert(m_numeric && "UmfPackLU: you must first call factorize()");
412
+ return m_fact_errorCode;
413
+ }
414
+
415
+ /** Provides access to the control settings array used by UmfPack.
416
+ *
417
+ * If this array contains NaN's, the default values are used.
418
+ *
419
+ * See UMFPACK documentation for details.
420
+ */
421
+ inline const UmfpackControl& umfpackControl() const
422
+ {
423
+ return m_control;
424
+ }
425
+
426
+ /** Provides access to the control settings array used by UmfPack.
427
+ *
428
+ * If this array contains NaN's, the default values are used.
429
+ *
430
+ * See UMFPACK documentation for details.
431
+ */
432
+ inline UmfpackControl& umfpackControl()
433
+ {
434
+ return m_control;
435
+ }
436
+
437
+ /** Performs a numeric decomposition of \a matrix
438
+ *
439
+ * The given matrix must has the same sparcity than the matrix on which the pattern anylysis has been performed.
440
+ *
441
+ * \sa analyzePattern(), compute()
442
+ */
443
+ template<typename InputMatrixType>
444
+ void factorize(const InputMatrixType& matrix)
445
+ {
446
+ eigen_assert(m_analysisIsOk && "UmfPackLU: you must first call analyzePattern()");
447
+ if(m_numeric)
448
+ umfpack_free_numeric(&m_numeric,Scalar(),StorageIndex());
449
+
450
+ grab(matrix.derived());
451
+
452
+ factorize_impl();
453
+ }
454
+
455
+ /** Prints the current UmfPack control settings.
456
+ *
457
+ * \sa umfpackControl()
458
+ */
459
+ void printUmfpackControl()
460
+ {
461
+ umfpack_report_control(m_control.data(), Scalar(),StorageIndex());
462
+ }
463
+
464
+ /** Prints statistics collected by UmfPack.
465
+ *
466
+ * \sa analyzePattern(), compute()
467
+ */
468
+ void printUmfpackInfo()
469
+ {
470
+ eigen_assert(m_analysisIsOk && "UmfPackLU: you must first call analyzePattern()");
471
+ umfpack_report_info(m_control.data(), m_umfpackInfo.data(), Scalar(),StorageIndex());
472
+ }
473
+
474
+ /** Prints the status of the previous factorization operation performed by UmfPack (symbolic or numerical factorization).
475
+ *
476
+ * \sa analyzePattern(), compute()
477
+ */
478
+ void printUmfpackStatus() {
479
+ eigen_assert(m_analysisIsOk && "UmfPackLU: you must first call analyzePattern()");
480
+ umfpack_report_status(m_control.data(), m_fact_errorCode, Scalar(),StorageIndex());
481
+ }
482
+
483
+ /** \internal */
484
+ template<typename BDerived,typename XDerived>
485
+ bool _solve_impl(const MatrixBase<BDerived> &b, MatrixBase<XDerived> &x) const;
486
+
487
+ Scalar determinant() const;
488
+
489
+ void extractData() const;
490
+
491
+ protected:
492
+
493
+ void init()
494
+ {
495
+ m_info = InvalidInput;
496
+ m_isInitialized = false;
497
+ m_numeric = 0;
498
+ m_symbolic = 0;
499
+ m_extractedDataAreDirty = true;
500
+
501
+ umfpack_defaults(m_control.data(), Scalar(),StorageIndex());
502
+ }
503
+
504
+ void analyzePattern_impl()
505
+ {
506
+ m_fact_errorCode = umfpack_symbolic(internal::convert_index<StorageIndex>(mp_matrix.rows()),
507
+ internal::convert_index<StorageIndex>(mp_matrix.cols()),
508
+ mp_matrix.outerIndexPtr(), mp_matrix.innerIndexPtr(), mp_matrix.valuePtr(),
509
+ &m_symbolic, m_control.data(), m_umfpackInfo.data());
510
+
511
+ m_isInitialized = true;
512
+ m_info = m_fact_errorCode ? InvalidInput : Success;
513
+ m_analysisIsOk = true;
514
+ m_factorizationIsOk = false;
515
+ m_extractedDataAreDirty = true;
516
+ }
517
+
518
+ void factorize_impl()
519
+ {
520
+
521
+ m_fact_errorCode = umfpack_numeric(mp_matrix.outerIndexPtr(), mp_matrix.innerIndexPtr(), mp_matrix.valuePtr(),
522
+ m_symbolic, &m_numeric, m_control.data(), m_umfpackInfo.data());
523
+
524
+ m_info = m_fact_errorCode == UMFPACK_OK ? Success : NumericalIssue;
525
+ m_factorizationIsOk = true;
526
+ m_extractedDataAreDirty = true;
527
+ }
528
+
529
+ template<typename MatrixDerived>
530
+ void grab(const EigenBase<MatrixDerived> &A)
531
+ {
532
+ mp_matrix.~UmfpackMatrixRef();
533
+ ::new (&mp_matrix) UmfpackMatrixRef(A.derived());
534
+ }
535
+
536
+ void grab(const UmfpackMatrixRef &A)
537
+ {
538
+ if(&(A.derived()) != &mp_matrix)
539
+ {
540
+ mp_matrix.~UmfpackMatrixRef();
541
+ ::new (&mp_matrix) UmfpackMatrixRef(A);
542
+ }
543
+ }
544
+
545
+ // cached data to reduce reallocation, etc.
546
+ mutable LUMatrixType m_l;
547
+ StorageIndex m_fact_errorCode;
548
+ UmfpackControl m_control;
549
+ mutable UmfpackInfo m_umfpackInfo;
550
+
551
+ mutable LUMatrixType m_u;
552
+ mutable IntColVectorType m_p;
553
+ mutable IntRowVectorType m_q;
554
+
555
+ UmfpackMatrixType m_dummy;
556
+ UmfpackMatrixRef mp_matrix;
557
+
558
+ void* m_numeric;
559
+ void* m_symbolic;
560
+
561
+ mutable ComputationInfo m_info;
562
+ int m_factorizationIsOk;
563
+ int m_analysisIsOk;
564
+ mutable bool m_extractedDataAreDirty;
565
+
566
+ private:
567
+ UmfPackLU(const UmfPackLU& ) { }
568
+ };
569
+
570
+
571
+ template<typename MatrixType>
572
+ void UmfPackLU<MatrixType>::extractData() const
573
+ {
574
+ if (m_extractedDataAreDirty)
575
+ {
576
+ // get size of the data
577
+ StorageIndex lnz, unz, rows, cols, nz_udiag;
578
+ umfpack_get_lunz(&lnz, &unz, &rows, &cols, &nz_udiag, m_numeric, Scalar());
579
+
580
+ // allocate data
581
+ m_l.resize(rows,(std::min)(rows,cols));
582
+ m_l.resizeNonZeros(lnz);
583
+
584
+ m_u.resize((std::min)(rows,cols),cols);
585
+ m_u.resizeNonZeros(unz);
586
+
587
+ m_p.resize(rows);
588
+ m_q.resize(cols);
589
+
590
+ // extract
591
+ umfpack_get_numeric(m_l.outerIndexPtr(), m_l.innerIndexPtr(), m_l.valuePtr(),
592
+ m_u.outerIndexPtr(), m_u.innerIndexPtr(), m_u.valuePtr(),
593
+ m_p.data(), m_q.data(), 0, 0, 0, m_numeric);
594
+
595
+ m_extractedDataAreDirty = false;
596
+ }
597
+ }
598
+
599
+ template<typename MatrixType>
600
+ typename UmfPackLU<MatrixType>::Scalar UmfPackLU<MatrixType>::determinant() const
601
+ {
602
+ Scalar det;
603
+ umfpack_get_determinant(&det, 0, m_numeric, 0, StorageIndex());
604
+ return det;
605
+ }
606
+
607
+ template<typename MatrixType>
608
+ template<typename BDerived,typename XDerived>
609
+ bool UmfPackLU<MatrixType>::_solve_impl(const MatrixBase<BDerived> &b, MatrixBase<XDerived> &x) const
610
+ {
611
+ Index rhsCols = b.cols();
612
+ eigen_assert((BDerived::Flags&RowMajorBit)==0 && "UmfPackLU backend does not support non col-major rhs yet");
613
+ eigen_assert((XDerived::Flags&RowMajorBit)==0 && "UmfPackLU backend does not support non col-major result yet");
614
+ eigen_assert(b.derived().data() != x.derived().data() && " Umfpack does not support inplace solve");
615
+
616
+ Scalar* x_ptr = 0;
617
+ Matrix<Scalar,Dynamic,1> x_tmp;
618
+ if(x.innerStride()!=1)
619
+ {
620
+ x_tmp.resize(x.rows());
621
+ x_ptr = x_tmp.data();
622
+ }
623
+ for (int j=0; j<rhsCols; ++j)
624
+ {
625
+ if(x.innerStride()==1)
626
+ x_ptr = &x.col(j).coeffRef(0);
627
+ StorageIndex errorCode = umfpack_solve(UMFPACK_A,
628
+ mp_matrix.outerIndexPtr(), mp_matrix.innerIndexPtr(), mp_matrix.valuePtr(),
629
+ x_ptr, &b.const_cast_derived().col(j).coeffRef(0),
630
+ m_numeric, m_control.data(), m_umfpackInfo.data());
631
+ if(x.innerStride()!=1)
632
+ x.col(j) = x_tmp;
633
+ if (errorCode!=0)
634
+ return false;
635
+ }
636
+
637
+ return true;
638
+ }
639
+
640
+ } // end namespace Eigen
641
+
642
+ #endif // EIGEN_UMFPACKSUPPORT_H