umappp 0.1.2

data/vendor/Eigen/src/Core/GlobalFunctions.h

@@ -0,0 +1,194 @@
+// This file is part of Eigen, a lightweight C++ template library
+// for linear algebra.
+//
+// Copyright (C) 2010-2016 Gael Guennebaud <gael.guennebaud@inria.fr>
+// Copyright (C) 2010 Benoit Jacob <jacob.benoit.1@gmail.com>
+//
+// This Source Code Form is subject to the terms of the Mozilla
+// Public License v. 2.0. If a copy of the MPL was not distributed
+// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
+
+#ifndef EIGEN_GLOBAL_FUNCTIONS_H
+#define EIGEN_GLOBAL_FUNCTIONS_H
+
+#ifdef EIGEN_PARSED_BY_DOXYGEN
+
+#define EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(NAME,FUNCTOR,DOC_OP,DOC_DETAILS) \
+  /** \returns an expression of the coefficient-wise DOC_OP of \a x
+
+    DOC_DETAILS
+
+    \sa <a href="group__CoeffwiseMathFunctions.html#cwisetable_##NAME">Math functions</a>, class CwiseUnaryOp
+    */ \
+  template<typename Derived> \
+  inline const Eigen::CwiseUnaryOp<Eigen::internal::FUNCTOR<typename Derived::Scalar>, const Derived> \
+  NAME(const Eigen::ArrayBase<Derived>& x);
+
+#else
+
+#define EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(NAME,FUNCTOR,DOC_OP,DOC_DETAILS) \
+  template<typename Derived> \
+  inline const Eigen::CwiseUnaryOp<Eigen::internal::FUNCTOR<typename Derived::Scalar>, const Derived> \
+  (NAME)(const Eigen::ArrayBase<Derived>& x) { \
+    return Eigen::CwiseUnaryOp<Eigen::internal::FUNCTOR<typename Derived::Scalar>, const Derived>(x.derived()); \
+  }
+
+#endif // EIGEN_PARSED_BY_DOXYGEN
+
+#define EIGEN_ARRAY_DECLARE_GLOBAL_EIGEN_UNARY(NAME,FUNCTOR) \
+  \
+  template<typename Derived> \
+  struct NAME##_retval<ArrayBase<Derived> > \
+  { \
+    typedef const Eigen::CwiseUnaryOp<Eigen::internal::FUNCTOR<typename Derived::Scalar>, const Derived> type; \
+  }; \
+  template<typename Derived> \
+  struct NAME##_impl<ArrayBase<Derived> > \
+  { \
+    static inline typename NAME##_retval<ArrayBase<Derived> >::type run(const Eigen::ArrayBase<Derived>& x) \
+    { \
+      return typename NAME##_retval<ArrayBase<Derived> >::type(x.derived()); \
+    } \
+  };
+
+namespace Eigen
+{
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(real,scalar_real_op,real part,\sa ArrayBase::real)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(imag,scalar_imag_op,imaginary part,\sa ArrayBase::imag)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(conj,scalar_conjugate_op,complex conjugate,\sa ArrayBase::conjugate)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(inverse,scalar_inverse_op,inverse,\sa ArrayBase::inverse)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(sin,scalar_sin_op,sine,\sa ArrayBase::sin)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(cos,scalar_cos_op,cosine,\sa ArrayBase::cos)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(tan,scalar_tan_op,tangent,\sa ArrayBase::tan)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(atan,scalar_atan_op,arc-tangent,\sa ArrayBase::atan)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(asin,scalar_asin_op,arc-sine,\sa ArrayBase::asin)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(acos,scalar_acos_op,arc-consine,\sa ArrayBase::acos)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(sinh,scalar_sinh_op,hyperbolic sine,\sa ArrayBase::sinh)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(cosh,scalar_cosh_op,hyperbolic cosine,\sa ArrayBase::cosh)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(tanh,scalar_tanh_op,hyperbolic tangent,\sa ArrayBase::tanh)
+#if EIGEN_HAS_CXX11_MATH
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(asinh,scalar_asinh_op,inverse hyperbolic sine,\sa ArrayBase::asinh)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(acosh,scalar_acosh_op,inverse hyperbolic cosine,\sa ArrayBase::acosh)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(atanh,scalar_atanh_op,inverse hyperbolic tangent,\sa ArrayBase::atanh)
+#endif
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(logistic,scalar_logistic_op,logistic function,\sa ArrayBase::logistic)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(lgamma,scalar_lgamma_op,natural logarithm of the gamma function,\sa ArrayBase::lgamma)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(digamma,scalar_digamma_op,derivative of lgamma,\sa ArrayBase::digamma)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(erf,scalar_erf_op,error function,\sa ArrayBase::erf)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(erfc,scalar_erfc_op,complement error function,\sa ArrayBase::erfc)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(ndtri,scalar_ndtri_op,inverse normal distribution function,\sa ArrayBase::ndtri)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(exp,scalar_exp_op,exponential,\sa ArrayBase::exp)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(expm1,scalar_expm1_op,exponential of a value minus 1,\sa ArrayBase::expm1)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(log,scalar_log_op,natural logarithm,\sa Eigen::log10 DOXCOMMA ArrayBase::log)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(log1p,scalar_log1p_op,natural logarithm of 1 plus the value,\sa ArrayBase::log1p)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(log10,scalar_log10_op,base 10 logarithm,\sa Eigen::log DOXCOMMA ArrayBase::log10)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(log2,scalar_log2_op,base 2 logarithm,\sa Eigen::log DOXCOMMA ArrayBase::log2)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(abs,scalar_abs_op,absolute value,\sa ArrayBase::abs DOXCOMMA MatrixBase::cwiseAbs)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(abs2,scalar_abs2_op,squared absolute value,\sa ArrayBase::abs2 DOXCOMMA MatrixBase::cwiseAbs2)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(arg,scalar_arg_op,complex argument,\sa ArrayBase::arg DOXCOMMA MatrixBase::cwiseArg)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(sqrt,scalar_sqrt_op,square root,\sa ArrayBase::sqrt DOXCOMMA MatrixBase::cwiseSqrt)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(rsqrt,scalar_rsqrt_op,reciprocal square root,\sa ArrayBase::rsqrt)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(square,scalar_square_op,square (power 2),\sa Eigen::abs2 DOXCOMMA Eigen::pow DOXCOMMA ArrayBase::square)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(cube,scalar_cube_op,cube (power 3),\sa Eigen::pow DOXCOMMA ArrayBase::cube)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(rint,scalar_rint_op,nearest integer,\sa Eigen::floor DOXCOMMA Eigen::ceil DOXCOMMA ArrayBase::round)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(round,scalar_round_op,nearest integer,\sa Eigen::floor DOXCOMMA Eigen::ceil DOXCOMMA ArrayBase::round)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(floor,scalar_floor_op,nearest integer not greater than the giben value,\sa Eigen::ceil DOXCOMMA ArrayBase::floor)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(ceil,scalar_ceil_op,nearest integer not less than the giben value,\sa Eigen::floor DOXCOMMA ArrayBase::ceil)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(isnan,scalar_isnan_op,not-a-number test,\sa Eigen::isinf DOXCOMMA Eigen::isfinite DOXCOMMA ArrayBase::isnan)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(isinf,scalar_isinf_op,infinite value test,\sa Eigen::isnan DOXCOMMA Eigen::isfinite DOXCOMMA ArrayBase::isinf)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(isfinite,scalar_isfinite_op,finite value test,\sa Eigen::isinf DOXCOMMA Eigen::isnan DOXCOMMA ArrayBase::isfinite)
+  EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(sign,scalar_sign_op,sign (or 0),\sa ArrayBase::sign)
+
+  /** \returns an expression of the coefficient-wise power of \a x to the given constant \a exponent.
+    *
+    * \tparam ScalarExponent is the scalar type of \a exponent. It must be compatible with the scalar type of the given expression (\c Derived::Scalar).
+    *
+    * \sa ArrayBase::pow()
+    *
+    * \relates ArrayBase
+    */
+#ifdef EIGEN_PARSED_BY_DOXYGEN
+  template<typename Derived,typename ScalarExponent>
+  inline const CwiseBinaryOp<internal::scalar_pow_op<Derived::Scalar,ScalarExponent>,Derived,Constant<ScalarExponent> >
+  pow(const Eigen::ArrayBase<Derived>& x, const ScalarExponent& exponent);
+#else
+  template <typename Derived,typename ScalarExponent>
+  EIGEN_DEVICE_FUNC inline
+  EIGEN_MSVC10_WORKAROUND_BINARYOP_RETURN_TYPE(
+    const EIGEN_EXPR_BINARYOP_SCALAR_RETURN_TYPE(Derived,typename internal::promote_scalar_arg<typename Derived::Scalar
+                                                 EIGEN_COMMA ScalarExponent EIGEN_COMMA
+                                                 EIGEN_SCALAR_BINARY_SUPPORTED(pow,typename Derived::Scalar,ScalarExponent)>::type,pow))
+  pow(const Eigen::ArrayBase<Derived>& x, const ScalarExponent& exponent)
+  {
+    typedef typename internal::promote_scalar_arg<typename Derived::Scalar,ScalarExponent,
+                                                  EIGEN_SCALAR_BINARY_SUPPORTED(pow,typename Derived::Scalar,ScalarExponent)>::type PromotedExponent;
+    return EIGEN_EXPR_BINARYOP_SCALAR_RETURN_TYPE(Derived,PromotedExponent,pow)(x.derived(),
+           typename internal::plain_constant_type<Derived,PromotedExponent>::type(x.derived().rows(), x.derived().cols(), internal::scalar_constant_op<PromotedExponent>(exponent)));
+  }
+#endif
+
+  /** \returns an expression of the coefficient-wise power of \a x to the given array of \a exponents.
+    *
+    * This function computes the coefficient-wise power.
+    *
+    * Example: \include Cwise_array_power_array.cpp
+    * Output: \verbinclude Cwise_array_power_array.out
+    *
+    * \sa ArrayBase::pow()
+    *
+    * \relates ArrayBase
+    */
+  template<typename Derived,typename ExponentDerived>
+  inline const Eigen::CwiseBinaryOp<Eigen::internal::scalar_pow_op<typename Derived::Scalar, typename ExponentDerived::Scalar>, const Derived, const ExponentDerived>
+  pow(const Eigen::ArrayBase<Derived>& x, const Eigen::ArrayBase<ExponentDerived>& exponents)
+  {
+    return Eigen::CwiseBinaryOp<Eigen::internal::scalar_pow_op<typename Derived::Scalar, typename ExponentDerived::Scalar>, const Derived, const ExponentDerived>(
+      x.derived(),
+      exponents.derived()
+    );
+  }
+
+  /** \returns an expression of the coefficient-wise power of the scalar \a x to the given array of \a exponents.
+    *
+    * This function computes the coefficient-wise power between a scalar and an array of exponents.
+    *
+    * \tparam Scalar is the scalar type of \a x. It must be compatible with the scalar type of the given array expression (\c Derived::Scalar).
+    *
+    * Example: \include Cwise_scalar_power_array.cpp
+    * Output: \verbinclude Cwise_scalar_power_array.out
+    *
+    * \sa ArrayBase::pow()
+    *
+    * \relates ArrayBase
+    */
+#ifdef EIGEN_PARSED_BY_DOXYGEN
+  template<typename Scalar,typename Derived>
+  inline const CwiseBinaryOp<internal::scalar_pow_op<Scalar,Derived::Scalar>,Constant<Scalar>,Derived>
+  pow(const Scalar& x,const Eigen::ArrayBase<Derived>& x);
+#else
+  template <typename Scalar, typename Derived>
+  EIGEN_DEVICE_FUNC inline
+  EIGEN_MSVC10_WORKAROUND_BINARYOP_RETURN_TYPE(
+    const EIGEN_SCALAR_BINARYOP_EXPR_RETURN_TYPE(typename internal::promote_scalar_arg<typename Derived::Scalar
+                                                 EIGEN_COMMA Scalar EIGEN_COMMA
+                                                 EIGEN_SCALAR_BINARY_SUPPORTED(pow,Scalar,typename Derived::Scalar)>::type,Derived,pow))
+  pow(const Scalar& x, const Eigen::ArrayBase<Derived>& exponents) {
+    typedef typename internal::promote_scalar_arg<typename Derived::Scalar,Scalar,
+                                                  EIGEN_SCALAR_BINARY_SUPPORTED(pow,Scalar,typename Derived::Scalar)>::type PromotedScalar;
+    return EIGEN_SCALAR_BINARYOP_EXPR_RETURN_TYPE(PromotedScalar,Derived,pow)(
+           typename internal::plain_constant_type<Derived,PromotedScalar>::type(exponents.derived().rows(), exponents.derived().cols(), internal::scalar_constant_op<PromotedScalar>(x)), exponents.derived());
+  }
+#endif
+
+
+  namespace internal
+  {
+    EIGEN_ARRAY_DECLARE_GLOBAL_EIGEN_UNARY(real,scalar_real_op)
+    EIGEN_ARRAY_DECLARE_GLOBAL_EIGEN_UNARY(imag,scalar_imag_op)
+    EIGEN_ARRAY_DECLARE_GLOBAL_EIGEN_UNARY(abs2,scalar_abs2_op)
+  }
+}
+
+// TODO: cleanly disable those functions that are not supported on Array (numext::real_ref, internal::random, internal::isApprox...)
+
+#endif // EIGEN_GLOBAL_FUNCTIONS_H

data/vendor/Eigen/src/Core/IO.h

@@ -0,0 +1,258 @@
+// This file is part of Eigen, a lightweight C++ template library
+// for linear algebra.
+//
+// Copyright (C) 2006-2008 Benoit Jacob <jacob.benoit.1@gmail.com>
+// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
+//
+// This Source Code Form is subject to the terms of the Mozilla
+// Public License v. 2.0. If a copy of the MPL was not distributed
+// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
+
+#ifndef EIGEN_IO_H
+#define EIGEN_IO_H
+
+namespace Eigen { 
+
+enum { DontAlignCols = 1 };
+enum { StreamPrecision = -1,
+       FullPrecision = -2 };
+
+namespace internal {
+template<typename Derived>
+std::ostream & print_matrix(std::ostream & s, const Derived& _m, const IOFormat& fmt);
+}
+
+/** \class IOFormat
+  * \ingroup Core_Module
+  *
+  * \brief Stores a set of parameters controlling the way matrices are printed
+  *
+  * List of available parameters:
+  *  - \b precision number of digits for floating point values, or one of the special constants \c StreamPrecision and \c FullPrecision.
+  *                 The default is the special value \c StreamPrecision which means to use the
+  *                 stream's own precision setting, as set for instance using \c cout.precision(3). The other special value
+  *                 \c FullPrecision means that the number of digits will be computed to match the full precision of each floating-point
+  *                 type.
+  *  - \b flags an OR-ed combination of flags, the default value is 0, the only currently available flag is \c DontAlignCols which
+  *             allows to disable the alignment of columns, resulting in faster code.
+  *  - \b coeffSeparator string printed between two coefficients of the same row
+  *  - \b rowSeparator string printed between two rows
+  *  - \b rowPrefix string printed at the beginning of each row
+  *  - \b rowSuffix string printed at the end of each row
+  *  - \b matPrefix string printed at the beginning of the matrix
+  *  - \b matSuffix string printed at the end of the matrix
+  *  - \b fill character printed to fill the empty space in aligned columns
+  *
+  * Example: \include IOFormat.cpp
+  * Output: \verbinclude IOFormat.out
+  *
+  * \sa DenseBase::format(), class WithFormat
+  */
+struct IOFormat
+{
+  /** Default constructor, see class IOFormat for the meaning of the parameters */
+  IOFormat(int _precision = StreamPrecision, int _flags = 0,
+    const std::string& _coeffSeparator = " ",
+    const std::string& _rowSeparator = "\n", const std::string& _rowPrefix="", const std::string& _rowSuffix="",
+    const std::string& _matPrefix="", const std::string& _matSuffix="", const char _fill=' ')
+  : matPrefix(_matPrefix), matSuffix(_matSuffix), rowPrefix(_rowPrefix), rowSuffix(_rowSuffix), rowSeparator(_rowSeparator),
+    rowSpacer(""), coeffSeparator(_coeffSeparator), fill(_fill), precision(_precision), flags(_flags)
+  {
+    // TODO check if rowPrefix, rowSuffix or rowSeparator contains a newline
+    // don't add rowSpacer if columns are not to be aligned
+    if((flags & DontAlignCols))
+      return;
+    int i = int(matSuffix.length())-1;
+    while (i>=0 && matSuffix[i]!='\n')
+    {
+      rowSpacer += ' ';
+      i--;
+    }
+  }
+  std::string matPrefix, matSuffix;
+  std::string rowPrefix, rowSuffix, rowSeparator, rowSpacer;
+  std::string coeffSeparator;
+  char fill;
+  int precision;
+  int flags;
+};
+
+/** \class WithFormat
+  * \ingroup Core_Module
+  *
+  * \brief Pseudo expression providing matrix output with given format
+  *
+  * \tparam ExpressionType the type of the object on which IO stream operations are performed
+  *
+  * This class represents an expression with stream operators controlled by a given IOFormat.
+  * It is the return type of DenseBase::format()
+  * and most of the time this is the only way it is used.
+  *
+  * See class IOFormat for some examples.
+  *
+  * \sa DenseBase::format(), class IOFormat
+  */
+template<typename ExpressionType>
+class WithFormat
+{
+  public:
+
+    WithFormat(const ExpressionType& matrix, const IOFormat& format)
+      : m_matrix(matrix), m_format(format)
+    {}
+
+    friend std::ostream & operator << (std::ostream & s, const WithFormat& wf)
+    {
+      return internal::print_matrix(s, wf.m_matrix.eval(), wf.m_format);
+    }
+
+  protected:
+    typename ExpressionType::Nested m_matrix;
+    IOFormat m_format;
+};
+
+namespace internal {
+
+// NOTE: This helper is kept for backward compatibility with previous code specializing
+//       this internal::significant_decimals_impl structure. In the future we should directly
+//       call digits10() which has been introduced in July 2016 in 3.3.
+template<typename Scalar>
+struct significant_decimals_impl
+{
+  static inline int run()
+  {
+    return NumTraits<Scalar>::digits10();
+  }
+};
+
+/** \internal
+  * print the matrix \a _m to the output stream \a s using the output format \a fmt */
+template<typename Derived>
+std::ostream & print_matrix(std::ostream & s, const Derived& _m, const IOFormat& fmt)
+{
+  using internal::is_same;
+  using internal::conditional;
+
+  if(_m.size() == 0)
+  {
+    s << fmt.matPrefix << fmt.matSuffix;
+    return s;
+  }
+  
+  typename Derived::Nested m = _m;
+  typedef typename Derived::Scalar Scalar;
+  typedef typename
+      conditional<
+          is_same<Scalar, char>::value ||
+            is_same<Scalar, unsigned char>::value ||
+            is_same<Scalar, numext::int8_t>::value ||
+            is_same<Scalar, numext::uint8_t>::value,
+          int,
+          typename conditional<
+              is_same<Scalar, std::complex<char> >::value ||
+                is_same<Scalar, std::complex<unsigned char> >::value ||
+                is_same<Scalar, std::complex<numext::int8_t> >::value ||
+                is_same<Scalar, std::complex<numext::uint8_t> >::value,
+              std::complex<int>,
+              const Scalar&
+            >::type
+        >::type PrintType;
+
+  Index width = 0;
+
+  std::streamsize explicit_precision;
+  if(fmt.precision == StreamPrecision)
+  {
+    explicit_precision = 0;
+  }
+  else if(fmt.precision == FullPrecision)
+  {
+    if (NumTraits<Scalar>::IsInteger)
+    {
+      explicit_precision = 0;
+    }
+    else
+    {
+      explicit_precision = significant_decimals_impl<Scalar>::run();
+    }
+  }
+  else
+  {
+    explicit_precision = fmt.precision;
+  }
+
+  std::streamsize old_precision = 0;
+  if(explicit_precision) old_precision = s.precision(explicit_precision);
+
+  bool align_cols = !(fmt.flags & DontAlignCols);
+  if(align_cols)
+  {
+    // compute the largest width
+    for(Index j = 0; j < m.cols(); ++j)
+      for(Index i = 0; i < m.rows(); ++i)
+      {
+        std::stringstream sstr;
+        sstr.copyfmt(s);
+        sstr << static_cast<PrintType>(m.coeff(i,j));
+        width = std::max<Index>(width, Index(sstr.str().length()));
+      }
+  }
+  std::streamsize old_width = s.width();
+  char old_fill_character = s.fill();
+  s << fmt.matPrefix;
+  for(Index i = 0; i < m.rows(); ++i)
+  {
+    if (i)
+      s << fmt.rowSpacer;
+    s << fmt.rowPrefix;
+    if(width) {
+      s.fill(fmt.fill);
+      s.width(width);
+    }
+    s << static_cast<PrintType>(m.coeff(i, 0));
+    for(Index j = 1; j < m.cols(); ++j)
+    {
+      s << fmt.coeffSeparator;
+      if(width) {
+        s.fill(fmt.fill);
+        s.width(width);
+      }
+      s << static_cast<PrintType>(m.coeff(i, j));
+    }
+    s << fmt.rowSuffix;
+    if( i < m.rows() - 1)
+      s << fmt.rowSeparator;
+  }
+  s << fmt.matSuffix;
+  if(explicit_precision) s.precision(old_precision);
+  if(width) {
+    s.fill(old_fill_character);
+    s.width(old_width);
+  }
+  return s;
+}
+
+} // end namespace internal
+
+/** \relates DenseBase
+  *
+  * Outputs the matrix, to the given stream.
+  *
+  * If you wish to print the matrix with a format different than the default, use DenseBase::format().
+  *
+  * It is also possible to change the default format by defining EIGEN_DEFAULT_IO_FORMAT before including Eigen headers.
+  * If not defined, this will automatically be defined to Eigen::IOFormat(), that is the Eigen::IOFormat with default parameters.
+  *
+  * \sa DenseBase::format()
+  */
+template<typename Derived>
+std::ostream & operator <<
+(std::ostream & s,
+ const DenseBase<Derived> & m)
+{
+  return internal::print_matrix(s, m.eval(), EIGEN_DEFAULT_IO_FORMAT);
+}
+
+} // end namespace Eigen
+
+#endif // EIGEN_IO_H

data/vendor/Eigen/src/Core/IndexedView.h

@@ -0,0 +1,237 @@
+// This file is part of Eigen, a lightweight C++ template library
+// for linear algebra.
+//
+// Copyright (C) 2017 Gael Guennebaud <gael.guennebaud@inria.fr>
+//
+// This Source Code Form is subject to the terms of the Mozilla
+// Public License v. 2.0. If a copy of the MPL was not distributed
+// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
+
+#ifndef EIGEN_INDEXED_VIEW_H
+#define EIGEN_INDEXED_VIEW_H
+
+namespace Eigen {
+
+namespace internal {
+
+template<typename XprType, typename RowIndices, typename ColIndices>
+struct traits<IndexedView<XprType, RowIndices, ColIndices> >
+ : traits<XprType>
+{
+  enum {
+    RowsAtCompileTime = int(array_size<RowIndices>::value),
+    ColsAtCompileTime = int(array_size<ColIndices>::value),
+    MaxRowsAtCompileTime = RowsAtCompileTime != Dynamic ? int(RowsAtCompileTime) : Dynamic,
+    MaxColsAtCompileTime = ColsAtCompileTime != Dynamic ? int(ColsAtCompileTime) : Dynamic,
+
+    XprTypeIsRowMajor = (int(traits<XprType>::Flags)&RowMajorBit) != 0,
+    IsRowMajor = (MaxRowsAtCompileTime==1&&MaxColsAtCompileTime!=1) ? 1
+               : (MaxColsAtCompileTime==1&&MaxRowsAtCompileTime!=1) ? 0
+               : XprTypeIsRowMajor,
+
+    RowIncr = int(get_compile_time_incr<RowIndices>::value),
+    ColIncr = int(get_compile_time_incr<ColIndices>::value),
+    InnerIncr = IsRowMajor ? ColIncr : RowIncr,
+    OuterIncr = IsRowMajor ? RowIncr : ColIncr,
+
+    HasSameStorageOrderAsXprType = (IsRowMajor == XprTypeIsRowMajor),
+    XprInnerStride = HasSameStorageOrderAsXprType ? int(inner_stride_at_compile_time<XprType>::ret) : int(outer_stride_at_compile_time<XprType>::ret),
+    XprOuterstride = HasSameStorageOrderAsXprType ? int(outer_stride_at_compile_time<XprType>::ret) : int(inner_stride_at_compile_time<XprType>::ret),
+
+    InnerSize = XprTypeIsRowMajor ? ColsAtCompileTime : RowsAtCompileTime,
+    IsBlockAlike = InnerIncr==1 && OuterIncr==1,
+    IsInnerPannel = HasSameStorageOrderAsXprType && is_same<AllRange<InnerSize>,typename conditional<XprTypeIsRowMajor,ColIndices,RowIndices>::type>::value,
+
+    InnerStrideAtCompileTime = InnerIncr<0 || InnerIncr==DynamicIndex || XprInnerStride==Dynamic ? Dynamic : XprInnerStride * InnerIncr,
+    OuterStrideAtCompileTime = OuterIncr<0 || OuterIncr==DynamicIndex || XprOuterstride==Dynamic ? Dynamic : XprOuterstride * OuterIncr,
+
+    ReturnAsScalar = is_same<RowIndices,SingleRange>::value && is_same<ColIndices,SingleRange>::value,
+    ReturnAsBlock = (!ReturnAsScalar) && IsBlockAlike,
+    ReturnAsIndexedView = (!ReturnAsScalar) && (!ReturnAsBlock),
+
+    // FIXME we deal with compile-time strides if and only if we have DirectAccessBit flag,
+    // but this is too strict regarding negative strides...
+    DirectAccessMask = (int(InnerIncr)!=UndefinedIncr && int(OuterIncr)!=UndefinedIncr && InnerIncr>=0 && OuterIncr>=0) ? DirectAccessBit : 0,
+    FlagsRowMajorBit = IsRowMajor ? RowMajorBit : 0,
+    FlagsLvalueBit = is_lvalue<XprType>::value ? LvalueBit : 0,
+    FlagsLinearAccessBit = (RowsAtCompileTime == 1 || ColsAtCompileTime == 1) ? LinearAccessBit : 0,
+    Flags = (traits<XprType>::Flags & (HereditaryBits | DirectAccessMask )) | FlagsLvalueBit | FlagsRowMajorBit | FlagsLinearAccessBit
+  };
+
+  typedef Block<XprType,RowsAtCompileTime,ColsAtCompileTime,IsInnerPannel> BlockType;
+};
+
+}
+
+template<typename XprType, typename RowIndices, typename ColIndices, typename StorageKind>
+class IndexedViewImpl;
+
+
+/** \class IndexedView
+  * \ingroup Core_Module
+  *
+  * \brief Expression of a non-sequential sub-matrix defined by arbitrary sequences of row and column indices
+  *
+  * \tparam XprType the type of the expression in which we are taking the intersections of sub-rows and sub-columns
+  * \tparam RowIndices the type of the object defining the sequence of row indices
+  * \tparam ColIndices the type of the object defining the sequence of column indices
+  *
+  * This class represents an expression of a sub-matrix (or sub-vector) defined as the intersection
+  * of sub-sets of rows and columns, that are themself defined by generic sequences of row indices \f$ \{r_0,r_1,..r_{m-1}\} \f$
+  * and column indices \f$ \{c_0,c_1,..c_{n-1} \}\f$. Let \f$ A \f$  be the nested matrix, then the resulting matrix \f$ B \f$ has \c m
+  * rows and \c n columns, and its entries are given by: \f$ B(i,j) = A(r_i,c_j) \f$.
+  *
+  * The \c RowIndices and \c ColIndices types must be compatible with the following API:
+  * \code
+  * <integral type> operator[](Index) const;
+  * Index size() const;
+  * \endcode
+  *
+  * Typical supported types thus include:
+  *  - std::vector<int>
+  *  - std::valarray<int>
+  *  - std::array<int>
+  *  - Plain C arrays: int[N]
+  *  - Eigen::ArrayXi
+  *  - decltype(ArrayXi::LinSpaced(...))
+  *  - Any view/expressions of the previous types
+  *  - Eigen::ArithmeticSequence
+  *  - Eigen::internal::AllRange      (helper for Eigen::all)
+  *  - Eigen::internal::SingleRange  (helper for single index)
+  *  - etc.
+  *
+  * In typical usages of %Eigen, this class should never be used directly. It is the return type of
+  * DenseBase::operator()(const RowIndices&, const ColIndices&).
+  *
+  * \sa class Block
+  */
+template<typename XprType, typename RowIndices, typename ColIndices>
+class IndexedView : public IndexedViewImpl<XprType, RowIndices, ColIndices, typename internal::traits<XprType>::StorageKind>
+{
+public:
+  typedef typename IndexedViewImpl<XprType, RowIndices, ColIndices, typename internal::traits<XprType>::StorageKind>::Base Base;
+  EIGEN_GENERIC_PUBLIC_INTERFACE(IndexedView)
+  EIGEN_INHERIT_ASSIGNMENT_OPERATORS(IndexedView)
+
+  typedef typename internal::ref_selector<XprType>::non_const_type MatrixTypeNested;
+  typedef typename internal::remove_all<XprType>::type NestedExpression;
+
+  template<typename T0, typename T1>
+  IndexedView(XprType& xpr, const T0& rowIndices, const T1& colIndices)
+    : m_xpr(xpr), m_rowIndices(rowIndices), m_colIndices(colIndices)
+  {}
+
+  /** \returns number of rows */
+  Index rows() const { return internal::size(m_rowIndices); }
+
+  /** \returns number of columns */
+  Index cols() const { return internal::size(m_colIndices); }
+
+  /** \returns the nested expression */
+  const typename internal::remove_all<XprType>::type&
+  nestedExpression() const { return m_xpr; }
+
+  /** \returns the nested expression */
+  typename internal::remove_reference<XprType>::type&
+  nestedExpression() { return m_xpr; }
+
+  /** \returns a const reference to the object storing/generating the row indices */
+  const RowIndices& rowIndices() const { return m_rowIndices; }
+
+  /** \returns a const reference to the object storing/generating the column indices */
+  const ColIndices& colIndices() const { return m_colIndices; }
+
+protected:
+  MatrixTypeNested m_xpr;
+  RowIndices m_rowIndices;
+  ColIndices m_colIndices;
+};
+
+
+// Generic API dispatcher
+template<typename XprType, typename RowIndices, typename ColIndices, typename StorageKind>
+class IndexedViewImpl
+  : public internal::generic_xpr_base<IndexedView<XprType, RowIndices, ColIndices> >::type
+{
+public:
+  typedef typename internal::generic_xpr_base<IndexedView<XprType, RowIndices, ColIndices> >::type Base;
+};
+
+namespace internal {
+
+
+template<typename ArgType, typename RowIndices, typename ColIndices>
+struct unary_evaluator<IndexedView<ArgType, RowIndices, ColIndices>, IndexBased>
+  : evaluator_base<IndexedView<ArgType, RowIndices, ColIndices> >
+{
+  typedef IndexedView<ArgType, RowIndices, ColIndices> XprType;
+
+  enum {
+    CoeffReadCost = evaluator<ArgType>::CoeffReadCost /* TODO + cost of row/col index */,
+
+    FlagsLinearAccessBit = (traits<XprType>::RowsAtCompileTime == 1 || traits<XprType>::ColsAtCompileTime == 1) ? LinearAccessBit : 0,
+
+    FlagsRowMajorBit = traits<XprType>::FlagsRowMajorBit, 
+
+    Flags = (evaluator<ArgType>::Flags & (HereditaryBits & ~RowMajorBit /*| LinearAccessBit | DirectAccessBit*/)) | FlagsLinearAccessBit | FlagsRowMajorBit,
+
+    Alignment = 0
+  };
+
+  EIGEN_DEVICE_FUNC explicit unary_evaluator(const XprType& xpr) : m_argImpl(xpr.nestedExpression()), m_xpr(xpr)
+  {
+    EIGEN_INTERNAL_CHECK_COST_VALUE(CoeffReadCost);
+  }
+
+  typedef typename XprType::Scalar Scalar;
+  typedef typename XprType::CoeffReturnType CoeffReturnType;
+
+  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
+  CoeffReturnType coeff(Index row, Index col) const
+  {
+    return m_argImpl.coeff(m_xpr.rowIndices()[row], m_xpr.colIndices()[col]);
+  }
+
+  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
+  Scalar& coeffRef(Index row, Index col)
+  {
+    return m_argImpl.coeffRef(m_xpr.rowIndices()[row], m_xpr.colIndices()[col]);
+  }
+
+  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
+  Scalar& coeffRef(Index index)
+  {
+    EIGEN_STATIC_ASSERT_LVALUE(XprType)
+    Index row = XprType::RowsAtCompileTime == 1 ? 0 : index;
+    Index col = XprType::RowsAtCompileTime == 1 ? index : 0;
+    return m_argImpl.coeffRef( m_xpr.rowIndices()[row], m_xpr.colIndices()[col]);
+  }
+
+  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
+  const Scalar& coeffRef(Index index) const
+  {
+    Index row = XprType::RowsAtCompileTime == 1 ? 0 : index;
+    Index col = XprType::RowsAtCompileTime == 1 ? index : 0;
+    return m_argImpl.coeffRef( m_xpr.rowIndices()[row], m_xpr.colIndices()[col]);
+  }
+
+  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
+  const CoeffReturnType coeff(Index index) const
+  {
+    Index row = XprType::RowsAtCompileTime == 1 ? 0 : index;
+    Index col = XprType::RowsAtCompileTime == 1 ? index : 0;
+    return m_argImpl.coeff( m_xpr.rowIndices()[row], m_xpr.colIndices()[col]);
+  }
+
+protected:
+
+  evaluator<ArgType> m_argImpl;
+  const XprType& m_xpr;
+
+};
+
+} // end namespace internal
+
+} // end namespace Eigen
+
+#endif // EIGEN_INDEXED_VIEW_H