umappp 0.1.2

Sign up to get free protection for your applications and to get access to all the features.
Files changed (395) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +25 -0
  3. data/README.md +110 -0
  4. data/ext/umappp/extconf.rb +25 -0
  5. data/ext/umappp/numo.hpp +867 -0
  6. data/ext/umappp/umappp.cpp +225 -0
  7. data/lib/umappp/version.rb +5 -0
  8. data/lib/umappp.rb +41 -0
  9. data/vendor/Eigen/Cholesky +45 -0
  10. data/vendor/Eigen/CholmodSupport +48 -0
  11. data/vendor/Eigen/Core +384 -0
  12. data/vendor/Eigen/Dense +7 -0
  13. data/vendor/Eigen/Eigen +2 -0
  14. data/vendor/Eigen/Eigenvalues +60 -0
  15. data/vendor/Eigen/Geometry +59 -0
  16. data/vendor/Eigen/Householder +29 -0
  17. data/vendor/Eigen/IterativeLinearSolvers +48 -0
  18. data/vendor/Eigen/Jacobi +32 -0
  19. data/vendor/Eigen/KLUSupport +41 -0
  20. data/vendor/Eigen/LU +47 -0
  21. data/vendor/Eigen/MetisSupport +35 -0
  22. data/vendor/Eigen/OrderingMethods +70 -0
  23. data/vendor/Eigen/PaStiXSupport +49 -0
  24. data/vendor/Eigen/PardisoSupport +35 -0
  25. data/vendor/Eigen/QR +50 -0
  26. data/vendor/Eigen/QtAlignedMalloc +39 -0
  27. data/vendor/Eigen/SPQRSupport +34 -0
  28. data/vendor/Eigen/SVD +50 -0
  29. data/vendor/Eigen/Sparse +34 -0
  30. data/vendor/Eigen/SparseCholesky +37 -0
  31. data/vendor/Eigen/SparseCore +69 -0
  32. data/vendor/Eigen/SparseLU +50 -0
  33. data/vendor/Eigen/SparseQR +36 -0
  34. data/vendor/Eigen/StdDeque +27 -0
  35. data/vendor/Eigen/StdList +26 -0
  36. data/vendor/Eigen/StdVector +27 -0
  37. data/vendor/Eigen/SuperLUSupport +64 -0
  38. data/vendor/Eigen/UmfPackSupport +40 -0
  39. data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
  40. data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
  41. data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  42. data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
  43. data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
  44. data/vendor/Eigen/src/Core/Array.h +417 -0
  45. data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
  46. data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
  47. data/vendor/Eigen/src/Core/Assign.h +90 -0
  48. data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
  49. data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
  50. data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
  51. data/vendor/Eigen/src/Core/Block.h +448 -0
  52. data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
  53. data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
  54. data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
  55. data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
  56. data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
  57. data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
  58. data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
  59. data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  60. data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  61. data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
  62. data/vendor/Eigen/src/Core/DenseBase.h +701 -0
  63. data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
  64. data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
  65. data/vendor/Eigen/src/Core/Diagonal.h +258 -0
  66. data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
  67. data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
  68. data/vendor/Eigen/src/Core/Dot.h +318 -0
  69. data/vendor/Eigen/src/Core/EigenBase.h +160 -0
  70. data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
  71. data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
  72. data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
  73. data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
  74. data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
  75. data/vendor/Eigen/src/Core/IO.h +258 -0
  76. data/vendor/Eigen/src/Core/IndexedView.h +237 -0
  77. data/vendor/Eigen/src/Core/Inverse.h +117 -0
  78. data/vendor/Eigen/src/Core/Map.h +171 -0
  79. data/vendor/Eigen/src/Core/MapBase.h +310 -0
  80. data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
  81. data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
  82. data/vendor/Eigen/src/Core/Matrix.h +565 -0
  83. data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
  84. data/vendor/Eigen/src/Core/NestByValue.h +85 -0
  85. data/vendor/Eigen/src/Core/NoAlias.h +109 -0
  86. data/vendor/Eigen/src/Core/NumTraits.h +335 -0
  87. data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  88. data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
  89. data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
  90. data/vendor/Eigen/src/Core/Product.h +191 -0
  91. data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
  92. data/vendor/Eigen/src/Core/Random.h +218 -0
  93. data/vendor/Eigen/src/Core/Redux.h +515 -0
  94. data/vendor/Eigen/src/Core/Ref.h +381 -0
  95. data/vendor/Eigen/src/Core/Replicate.h +142 -0
  96. data/vendor/Eigen/src/Core/Reshaped.h +454 -0
  97. data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
  98. data/vendor/Eigen/src/Core/Reverse.h +217 -0
  99. data/vendor/Eigen/src/Core/Select.h +164 -0
  100. data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
  101. data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  102. data/vendor/Eigen/src/Core/Solve.h +188 -0
  103. data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
  104. data/vendor/Eigen/src/Core/SolverBase.h +168 -0
  105. data/vendor/Eigen/src/Core/StableNorm.h +251 -0
  106. data/vendor/Eigen/src/Core/StlIterators.h +463 -0
  107. data/vendor/Eigen/src/Core/Stride.h +116 -0
  108. data/vendor/Eigen/src/Core/Swap.h +68 -0
  109. data/vendor/Eigen/src/Core/Transpose.h +464 -0
  110. data/vendor/Eigen/src/Core/Transpositions.h +386 -0
  111. data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
  112. data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
  113. data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
  114. data/vendor/Eigen/src/Core/Visitor.h +381 -0
  115. data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
  116. data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
  117. data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
  118. data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
  119. data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  120. data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
  121. data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
  122. data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  123. data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
  124. data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
  125. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  126. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  127. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  128. data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
  129. data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
  130. data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  131. data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
  132. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  133. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  134. data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
  135. data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
  136. data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  137. data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
  138. data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  139. data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  140. data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  141. data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  142. data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  143. data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  144. data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
  145. data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  146. data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
  147. data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
  148. data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  149. data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
  150. data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
  151. data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
  152. data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
  153. data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  154. data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  155. data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  156. data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  157. data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  158. data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  159. data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  160. data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  161. data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
  162. data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
  163. data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
  164. data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
  165. data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
  166. data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
  167. data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
  168. data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  169. data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
  170. data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
  171. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
  172. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
  173. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  174. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
  175. data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
  176. data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  177. data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
  178. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
  179. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
  180. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
  181. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  182. data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  183. data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
  184. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
  185. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
  186. data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  187. data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  188. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
  189. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
  190. data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
  191. data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
  192. data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  193. data/vendor/Eigen/src/Core/util/Constants.h +563 -0
  194. data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
  195. data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
  196. data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  197. data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
  198. data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
  199. data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
  200. data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
  201. data/vendor/Eigen/src/Core/util/Meta.h +812 -0
  202. data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
  203. data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
  204. data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  205. data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
  206. data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  207. data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
  208. data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  209. data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
  210. data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  211. data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  212. data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  213. data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  214. data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  215. data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  216. data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
  217. data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
  218. data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  219. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
  220. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  221. data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
  222. data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
  223. data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
  224. data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
  225. data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
  226. data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
  227. data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
  228. data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
  229. data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
  230. data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
  231. data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
  232. data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
  233. data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
  234. data/vendor/Eigen/src/Geometry/Translation.h +202 -0
  235. data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
  236. data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  237. data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
  238. data/vendor/Eigen/src/Householder/Householder.h +176 -0
  239. data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
  240. data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  241. data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
  242. data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
  243. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
  244. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
  245. data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
  246. data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
  247. data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
  248. data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
  249. data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  250. data/vendor/Eigen/src/LU/Determinant.h +117 -0
  251. data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
  252. data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
  253. data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
  254. data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  255. data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
  256. data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  257. data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
  258. data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
  259. data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
  260. data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  261. data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
  262. data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
  263. data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  264. data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
  265. data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
  266. data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
  267. data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  268. data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
  269. data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
  270. data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
  271. data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  272. data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
  273. data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  274. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
  275. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
  276. data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
  277. data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
  278. data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  279. data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  280. data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
  281. data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
  282. data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  283. data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
  284. data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
  285. data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
  286. data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
  287. data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  288. data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
  289. data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  290. data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
  291. data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
  292. data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
  293. data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  294. data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
  295. data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
  296. data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
  297. data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
  298. data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  299. data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  300. data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  301. data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  302. data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
  303. data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
  304. data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
  305. data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  306. data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
  307. data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  308. data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  309. data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  310. data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
  311. data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  312. data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  313. data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  314. data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  315. data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  316. data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  317. data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  318. data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  319. data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  320. data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  321. data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  322. data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  323. data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
  324. data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
  325. data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
  326. data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
  327. data/vendor/Eigen/src/StlSupport/details.h +84 -0
  328. data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
  329. data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
  330. data/vendor/Eigen/src/misc/Image.h +82 -0
  331. data/vendor/Eigen/src/misc/Kernel.h +79 -0
  332. data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
  333. data/vendor/Eigen/src/misc/blas.h +440 -0
  334. data/vendor/Eigen/src/misc/lapack.h +152 -0
  335. data/vendor/Eigen/src/misc/lapacke.h +16292 -0
  336. data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
  337. data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
  338. data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
  339. data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
  340. data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  341. data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
  342. data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  343. data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  344. data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
  345. data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
  346. data/vendor/aarand/aarand.hpp +114 -0
  347. data/vendor/annoy/annoylib.h +1495 -0
  348. data/vendor/annoy/kissrandom.h +120 -0
  349. data/vendor/annoy/mman.h +242 -0
  350. data/vendor/hnswlib/bruteforce.h +152 -0
  351. data/vendor/hnswlib/hnswalg.h +1192 -0
  352. data/vendor/hnswlib/hnswlib.h +108 -0
  353. data/vendor/hnswlib/space_ip.h +282 -0
  354. data/vendor/hnswlib/space_l2.h +281 -0
  355. data/vendor/hnswlib/visited_list_pool.h +79 -0
  356. data/vendor/irlba/irlba.hpp +575 -0
  357. data/vendor/irlba/lanczos.hpp +212 -0
  358. data/vendor/irlba/parallel.hpp +474 -0
  359. data/vendor/irlba/utils.hpp +224 -0
  360. data/vendor/irlba/wrappers.hpp +228 -0
  361. data/vendor/kmeans/Base.hpp +75 -0
  362. data/vendor/kmeans/Details.hpp +79 -0
  363. data/vendor/kmeans/HartiganWong.hpp +492 -0
  364. data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
  365. data/vendor/kmeans/InitializeNone.hpp +44 -0
  366. data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
  367. data/vendor/kmeans/InitializeRandom.hpp +91 -0
  368. data/vendor/kmeans/Kmeans.hpp +161 -0
  369. data/vendor/kmeans/Lloyd.hpp +134 -0
  370. data/vendor/kmeans/MiniBatch.hpp +269 -0
  371. data/vendor/kmeans/QuickSearch.hpp +179 -0
  372. data/vendor/kmeans/compute_centroids.hpp +32 -0
  373. data/vendor/kmeans/compute_wcss.hpp +27 -0
  374. data/vendor/kmeans/is_edge_case.hpp +42 -0
  375. data/vendor/kmeans/random.hpp +55 -0
  376. data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
  377. data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
  378. data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
  379. data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
  380. data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
  381. data/vendor/knncolle/knncolle.hpp +34 -0
  382. data/vendor/knncolle/utils/Base.hpp +100 -0
  383. data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
  384. data/vendor/knncolle/utils/distances.hpp +98 -0
  385. data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
  386. data/vendor/powerit/PowerIterations.hpp +157 -0
  387. data/vendor/umappp/NeighborList.hpp +37 -0
  388. data/vendor/umappp/Umap.hpp +662 -0
  389. data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
  390. data/vendor/umappp/find_ab.hpp +157 -0
  391. data/vendor/umappp/neighbor_similarities.hpp +136 -0
  392. data/vendor/umappp/optimize_layout.hpp +285 -0
  393. data/vendor/umappp/spectral_init.hpp +181 -0
  394. data/vendor/umappp/umappp.hpp +13 -0
  395. metadata +465 -0
@@ -0,0 +1,624 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2006-2009 Benoit Jacob <jacob.benoit.1@gmail.com>
5
+ // Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_PARTIALLU_H
12
+ #define EIGEN_PARTIALLU_H
13
+
14
+ namespace Eigen {
15
+
16
+ namespace internal {
17
+ template<typename _MatrixType> struct traits<PartialPivLU<_MatrixType> >
18
+ : traits<_MatrixType>
19
+ {
20
+ typedef MatrixXpr XprKind;
21
+ typedef SolverStorage StorageKind;
22
+ typedef int StorageIndex;
23
+ typedef traits<_MatrixType> BaseTraits;
24
+ enum {
25
+ Flags = BaseTraits::Flags & RowMajorBit,
26
+ CoeffReadCost = Dynamic
27
+ };
28
+ };
29
+
30
+ template<typename T,typename Derived>
31
+ struct enable_if_ref;
32
+ // {
33
+ // typedef Derived type;
34
+ // };
35
+
36
+ template<typename T,typename Derived>
37
+ struct enable_if_ref<Ref<T>,Derived> {
38
+ typedef Derived type;
39
+ };
40
+
41
+ } // end namespace internal
42
+
43
+ /** \ingroup LU_Module
44
+ *
45
+ * \class PartialPivLU
46
+ *
47
+ * \brief LU decomposition of a matrix with partial pivoting, and related features
48
+ *
49
+ * \tparam _MatrixType the type of the matrix of which we are computing the LU decomposition
50
+ *
51
+ * This class represents a LU decomposition of a \b square \b invertible matrix, with partial pivoting: the matrix A
52
+ * is decomposed as A = PLU where L is unit-lower-triangular, U is upper-triangular, and P
53
+ * is a permutation matrix.
54
+ *
55
+ * Typically, partial pivoting LU decomposition is only considered numerically stable for square invertible
56
+ * matrices. Thus LAPACK's dgesv and dgesvx require the matrix to be square and invertible. The present class
57
+ * does the same. It will assert that the matrix is square, but it won't (actually it can't) check that the
58
+ * matrix is invertible: it is your task to check that you only use this decomposition on invertible matrices.
59
+ *
60
+ * The guaranteed safe alternative, working for all matrices, is the full pivoting LU decomposition, provided
61
+ * by class FullPivLU.
62
+ *
63
+ * This is \b not a rank-revealing LU decomposition. Many features are intentionally absent from this class,
64
+ * such as rank computation. If you need these features, use class FullPivLU.
65
+ *
66
+ * This LU decomposition is suitable to invert invertible matrices. It is what MatrixBase::inverse() uses
67
+ * in the general case.
68
+ * On the other hand, it is \b not suitable to determine whether a given matrix is invertible.
69
+ *
70
+ * The data of the LU decomposition can be directly accessed through the methods matrixLU(), permutationP().
71
+ *
72
+ * This class supports the \link InplaceDecomposition inplace decomposition \endlink mechanism.
73
+ *
74
+ * \sa MatrixBase::partialPivLu(), MatrixBase::determinant(), MatrixBase::inverse(), MatrixBase::computeInverse(), class FullPivLU
75
+ */
76
+ template<typename _MatrixType> class PartialPivLU
77
+ : public SolverBase<PartialPivLU<_MatrixType> >
78
+ {
79
+ public:
80
+
81
+ typedef _MatrixType MatrixType;
82
+ typedef SolverBase<PartialPivLU> Base;
83
+ friend class SolverBase<PartialPivLU>;
84
+
85
+ EIGEN_GENERIC_PUBLIC_INTERFACE(PartialPivLU)
86
+ enum {
87
+ MaxRowsAtCompileTime = MatrixType::MaxRowsAtCompileTime,
88
+ MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime
89
+ };
90
+ typedef PermutationMatrix<RowsAtCompileTime, MaxRowsAtCompileTime> PermutationType;
91
+ typedef Transpositions<RowsAtCompileTime, MaxRowsAtCompileTime> TranspositionType;
92
+ typedef typename MatrixType::PlainObject PlainObject;
93
+
94
+ /**
95
+ * \brief Default Constructor.
96
+ *
97
+ * The default constructor is useful in cases in which the user intends to
98
+ * perform decompositions via PartialPivLU::compute(const MatrixType&).
99
+ */
100
+ PartialPivLU();
101
+
102
+ /** \brief Default Constructor with memory preallocation
103
+ *
104
+ * Like the default constructor but with preallocation of the internal data
105
+ * according to the specified problem \a size.
106
+ * \sa PartialPivLU()
107
+ */
108
+ explicit PartialPivLU(Index size);
109
+
110
+ /** Constructor.
111
+ *
112
+ * \param matrix the matrix of which to compute the LU decomposition.
113
+ *
114
+ * \warning The matrix should have full rank (e.g. if it's square, it should be invertible).
115
+ * If you need to deal with non-full rank, use class FullPivLU instead.
116
+ */
117
+ template<typename InputType>
118
+ explicit PartialPivLU(const EigenBase<InputType>& matrix);
119
+
120
+ /** Constructor for \link InplaceDecomposition inplace decomposition \endlink
121
+ *
122
+ * \param matrix the matrix of which to compute the LU decomposition.
123
+ *
124
+ * \warning The matrix should have full rank (e.g. if it's square, it should be invertible).
125
+ * If you need to deal with non-full rank, use class FullPivLU instead.
126
+ */
127
+ template<typename InputType>
128
+ explicit PartialPivLU(EigenBase<InputType>& matrix);
129
+
130
+ template<typename InputType>
131
+ PartialPivLU& compute(const EigenBase<InputType>& matrix) {
132
+ m_lu = matrix.derived();
133
+ compute();
134
+ return *this;
135
+ }
136
+
137
+ /** \returns the LU decomposition matrix: the upper-triangular part is U, the
138
+ * unit-lower-triangular part is L (at least for square matrices; in the non-square
139
+ * case, special care is needed, see the documentation of class FullPivLU).
140
+ *
141
+ * \sa matrixL(), matrixU()
142
+ */
143
+ inline const MatrixType& matrixLU() const
144
+ {
145
+ eigen_assert(m_isInitialized && "PartialPivLU is not initialized.");
146
+ return m_lu;
147
+ }
148
+
149
+ /** \returns the permutation matrix P.
150
+ */
151
+ inline const PermutationType& permutationP() const
152
+ {
153
+ eigen_assert(m_isInitialized && "PartialPivLU is not initialized.");
154
+ return m_p;
155
+ }
156
+
157
+ #ifdef EIGEN_PARSED_BY_DOXYGEN
158
+ /** This method returns the solution x to the equation Ax=b, where A is the matrix of which
159
+ * *this is the LU decomposition.
160
+ *
161
+ * \param b the right-hand-side of the equation to solve. Can be a vector or a matrix,
162
+ * the only requirement in order for the equation to make sense is that
163
+ * b.rows()==A.rows(), where A is the matrix of which *this is the LU decomposition.
164
+ *
165
+ * \returns the solution.
166
+ *
167
+ * Example: \include PartialPivLU_solve.cpp
168
+ * Output: \verbinclude PartialPivLU_solve.out
169
+ *
170
+ * Since this PartialPivLU class assumes anyway that the matrix A is invertible, the solution
171
+ * theoretically exists and is unique regardless of b.
172
+ *
173
+ * \sa TriangularView::solve(), inverse(), computeInverse()
174
+ */
175
+ template<typename Rhs>
176
+ inline const Solve<PartialPivLU, Rhs>
177
+ solve(const MatrixBase<Rhs>& b) const;
178
+ #endif
179
+
180
+ /** \returns an estimate of the reciprocal condition number of the matrix of which \c *this is
181
+ the LU decomposition.
182
+ */
183
+ inline RealScalar rcond() const
184
+ {
185
+ eigen_assert(m_isInitialized && "PartialPivLU is not initialized.");
186
+ return internal::rcond_estimate_helper(m_l1_norm, *this);
187
+ }
188
+
189
+ /** \returns the inverse of the matrix of which *this is the LU decomposition.
190
+ *
191
+ * \warning The matrix being decomposed here is assumed to be invertible. If you need to check for
192
+ * invertibility, use class FullPivLU instead.
193
+ *
194
+ * \sa MatrixBase::inverse(), LU::inverse()
195
+ */
196
+ inline const Inverse<PartialPivLU> inverse() const
197
+ {
198
+ eigen_assert(m_isInitialized && "PartialPivLU is not initialized.");
199
+ return Inverse<PartialPivLU>(*this);
200
+ }
201
+
202
+ /** \returns the determinant of the matrix of which
203
+ * *this is the LU decomposition. It has only linear complexity
204
+ * (that is, O(n) where n is the dimension of the square matrix)
205
+ * as the LU decomposition has already been computed.
206
+ *
207
+ * \note For fixed-size matrices of size up to 4, MatrixBase::determinant() offers
208
+ * optimized paths.
209
+ *
210
+ * \warning a determinant can be very big or small, so for matrices
211
+ * of large enough dimension, there is a risk of overflow/underflow.
212
+ *
213
+ * \sa MatrixBase::determinant()
214
+ */
215
+ Scalar determinant() const;
216
+
217
+ MatrixType reconstructedMatrix() const;
218
+
219
+ EIGEN_CONSTEXPR inline Index rows() const EIGEN_NOEXCEPT { return m_lu.rows(); }
220
+ EIGEN_CONSTEXPR inline Index cols() const EIGEN_NOEXCEPT { return m_lu.cols(); }
221
+
222
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
223
+ template<typename RhsType, typename DstType>
224
+ EIGEN_DEVICE_FUNC
225
+ void _solve_impl(const RhsType &rhs, DstType &dst) const {
226
+ /* The decomposition PA = LU can be rewritten as A = P^{-1} L U.
227
+ * So we proceed as follows:
228
+ * Step 1: compute c = Pb.
229
+ * Step 2: replace c by the solution x to Lx = c.
230
+ * Step 3: replace c by the solution x to Ux = c.
231
+ */
232
+
233
+ // Step 1
234
+ dst = permutationP() * rhs;
235
+
236
+ // Step 2
237
+ m_lu.template triangularView<UnitLower>().solveInPlace(dst);
238
+
239
+ // Step 3
240
+ m_lu.template triangularView<Upper>().solveInPlace(dst);
241
+ }
242
+
243
+ template<bool Conjugate, typename RhsType, typename DstType>
244
+ EIGEN_DEVICE_FUNC
245
+ void _solve_impl_transposed(const RhsType &rhs, DstType &dst) const {
246
+ /* The decomposition PA = LU can be rewritten as A^T = U^T L^T P.
247
+ * So we proceed as follows:
248
+ * Step 1: compute c as the solution to L^T c = b
249
+ * Step 2: replace c by the solution x to U^T x = c.
250
+ * Step 3: update c = P^-1 c.
251
+ */
252
+
253
+ eigen_assert(rhs.rows() == m_lu.cols());
254
+
255
+ // Step 1
256
+ dst = m_lu.template triangularView<Upper>().transpose()
257
+ .template conjugateIf<Conjugate>().solve(rhs);
258
+ // Step 2
259
+ m_lu.template triangularView<UnitLower>().transpose()
260
+ .template conjugateIf<Conjugate>().solveInPlace(dst);
261
+ // Step 3
262
+ dst = permutationP().transpose() * dst;
263
+ }
264
+ #endif
265
+
266
+ protected:
267
+
268
+ static void check_template_parameters()
269
+ {
270
+ EIGEN_STATIC_ASSERT_NON_INTEGER(Scalar);
271
+ }
272
+
273
+ void compute();
274
+
275
+ MatrixType m_lu;
276
+ PermutationType m_p;
277
+ TranspositionType m_rowsTranspositions;
278
+ RealScalar m_l1_norm;
279
+ signed char m_det_p;
280
+ bool m_isInitialized;
281
+ };
282
+
283
+ template<typename MatrixType>
284
+ PartialPivLU<MatrixType>::PartialPivLU()
285
+ : m_lu(),
286
+ m_p(),
287
+ m_rowsTranspositions(),
288
+ m_l1_norm(0),
289
+ m_det_p(0),
290
+ m_isInitialized(false)
291
+ {
292
+ }
293
+
294
+ template<typename MatrixType>
295
+ PartialPivLU<MatrixType>::PartialPivLU(Index size)
296
+ : m_lu(size, size),
297
+ m_p(size),
298
+ m_rowsTranspositions(size),
299
+ m_l1_norm(0),
300
+ m_det_p(0),
301
+ m_isInitialized(false)
302
+ {
303
+ }
304
+
305
+ template<typename MatrixType>
306
+ template<typename InputType>
307
+ PartialPivLU<MatrixType>::PartialPivLU(const EigenBase<InputType>& matrix)
308
+ : m_lu(matrix.rows(),matrix.cols()),
309
+ m_p(matrix.rows()),
310
+ m_rowsTranspositions(matrix.rows()),
311
+ m_l1_norm(0),
312
+ m_det_p(0),
313
+ m_isInitialized(false)
314
+ {
315
+ compute(matrix.derived());
316
+ }
317
+
318
+ template<typename MatrixType>
319
+ template<typename InputType>
320
+ PartialPivLU<MatrixType>::PartialPivLU(EigenBase<InputType>& matrix)
321
+ : m_lu(matrix.derived()),
322
+ m_p(matrix.rows()),
323
+ m_rowsTranspositions(matrix.rows()),
324
+ m_l1_norm(0),
325
+ m_det_p(0),
326
+ m_isInitialized(false)
327
+ {
328
+ compute();
329
+ }
330
+
331
+ namespace internal {
332
+
333
+ /** \internal This is the blocked version of fullpivlu_unblocked() */
334
+ template<typename Scalar, int StorageOrder, typename PivIndex, int SizeAtCompileTime=Dynamic>
335
+ struct partial_lu_impl
336
+ {
337
+ static const int UnBlockedBound = 16;
338
+ static const bool UnBlockedAtCompileTime = SizeAtCompileTime!=Dynamic && SizeAtCompileTime<=UnBlockedBound;
339
+ static const int ActualSizeAtCompileTime = UnBlockedAtCompileTime ? SizeAtCompileTime : Dynamic;
340
+ // Remaining rows and columns at compile-time:
341
+ static const int RRows = SizeAtCompileTime==2 ? 1 : Dynamic;
342
+ static const int RCols = SizeAtCompileTime==2 ? 1 : Dynamic;
343
+ typedef Matrix<Scalar, ActualSizeAtCompileTime, ActualSizeAtCompileTime, StorageOrder> MatrixType;
344
+ typedef Ref<MatrixType> MatrixTypeRef;
345
+ typedef Ref<Matrix<Scalar, Dynamic, Dynamic, StorageOrder> > BlockType;
346
+ typedef typename MatrixType::RealScalar RealScalar;
347
+
348
+ /** \internal performs the LU decomposition in-place of the matrix \a lu
349
+ * using an unblocked algorithm.
350
+ *
351
+ * In addition, this function returns the row transpositions in the
352
+ * vector \a row_transpositions which must have a size equal to the number
353
+ * of columns of the matrix \a lu, and an integer \a nb_transpositions
354
+ * which returns the actual number of transpositions.
355
+ *
356
+ * \returns The index of the first pivot which is exactly zero if any, or a negative number otherwise.
357
+ */
358
+ static Index unblocked_lu(MatrixTypeRef& lu, PivIndex* row_transpositions, PivIndex& nb_transpositions)
359
+ {
360
+ typedef scalar_score_coeff_op<Scalar> Scoring;
361
+ typedef typename Scoring::result_type Score;
362
+ const Index rows = lu.rows();
363
+ const Index cols = lu.cols();
364
+ const Index size = (std::min)(rows,cols);
365
+ // For small compile-time matrices it is worth processing the last row separately:
366
+ // speedup: +100% for 2x2, +10% for others.
367
+ const Index endk = UnBlockedAtCompileTime ? size-1 : size;
368
+ nb_transpositions = 0;
369
+ Index first_zero_pivot = -1;
370
+ for(Index k = 0; k < endk; ++k)
371
+ {
372
+ int rrows = internal::convert_index<int>(rows-k-1);
373
+ int rcols = internal::convert_index<int>(cols-k-1);
374
+
375
+ Index row_of_biggest_in_col;
376
+ Score biggest_in_corner
377
+ = lu.col(k).tail(rows-k).unaryExpr(Scoring()).maxCoeff(&row_of_biggest_in_col);
378
+ row_of_biggest_in_col += k;
379
+
380
+ row_transpositions[k] = PivIndex(row_of_biggest_in_col);
381
+
382
+ if(biggest_in_corner != Score(0))
383
+ {
384
+ if(k != row_of_biggest_in_col)
385
+ {
386
+ lu.row(k).swap(lu.row(row_of_biggest_in_col));
387
+ ++nb_transpositions;
388
+ }
389
+
390
+ lu.col(k).tail(fix<RRows>(rrows)) /= lu.coeff(k,k);
391
+ }
392
+ else if(first_zero_pivot==-1)
393
+ {
394
+ // the pivot is exactly zero, we record the index of the first pivot which is exactly 0,
395
+ // and continue the factorization such we still have A = PLU
396
+ first_zero_pivot = k;
397
+ }
398
+
399
+ if(k<rows-1)
400
+ lu.bottomRightCorner(fix<RRows>(rrows),fix<RCols>(rcols)).noalias() -= lu.col(k).tail(fix<RRows>(rrows)) * lu.row(k).tail(fix<RCols>(rcols));
401
+ }
402
+
403
+ // special handling of the last entry
404
+ if(UnBlockedAtCompileTime)
405
+ {
406
+ Index k = endk;
407
+ row_transpositions[k] = PivIndex(k);
408
+ if (Scoring()(lu(k, k)) == Score(0) && first_zero_pivot == -1)
409
+ first_zero_pivot = k;
410
+ }
411
+
412
+ return first_zero_pivot;
413
+ }
414
+
415
+ /** \internal performs the LU decomposition in-place of the matrix represented
416
+ * by the variables \a rows, \a cols, \a lu_data, and \a lu_stride using a
417
+ * recursive, blocked algorithm.
418
+ *
419
+ * In addition, this function returns the row transpositions in the
420
+ * vector \a row_transpositions which must have a size equal to the number
421
+ * of columns of the matrix \a lu, and an integer \a nb_transpositions
422
+ * which returns the actual number of transpositions.
423
+ *
424
+ * \returns The index of the first pivot which is exactly zero if any, or a negative number otherwise.
425
+ *
426
+ * \note This very low level interface using pointers, etc. is to:
427
+ * 1 - reduce the number of instantiations to the strict minimum
428
+ * 2 - avoid infinite recursion of the instantiations with Block<Block<Block<...> > >
429
+ */
430
+ static Index blocked_lu(Index rows, Index cols, Scalar* lu_data, Index luStride, PivIndex* row_transpositions, PivIndex& nb_transpositions, Index maxBlockSize=256)
431
+ {
432
+ MatrixTypeRef lu = MatrixType::Map(lu_data,rows, cols, OuterStride<>(luStride));
433
+
434
+ const Index size = (std::min)(rows,cols);
435
+
436
+ // if the matrix is too small, no blocking:
437
+ if(UnBlockedAtCompileTime || size<=UnBlockedBound)
438
+ {
439
+ return unblocked_lu(lu, row_transpositions, nb_transpositions);
440
+ }
441
+
442
+ // automatically adjust the number of subdivisions to the size
443
+ // of the matrix so that there is enough sub blocks:
444
+ Index blockSize;
445
+ {
446
+ blockSize = size/8;
447
+ blockSize = (blockSize/16)*16;
448
+ blockSize = (std::min)((std::max)(blockSize,Index(8)), maxBlockSize);
449
+ }
450
+
451
+ nb_transpositions = 0;
452
+ Index first_zero_pivot = -1;
453
+ for(Index k = 0; k < size; k+=blockSize)
454
+ {
455
+ Index bs = (std::min)(size-k,blockSize); // actual size of the block
456
+ Index trows = rows - k - bs; // trailing rows
457
+ Index tsize = size - k - bs; // trailing size
458
+
459
+ // partition the matrix:
460
+ // A00 | A01 | A02
461
+ // lu = A_0 | A_1 | A_2 = A10 | A11 | A12
462
+ // A20 | A21 | A22
463
+ BlockType A_0 = lu.block(0,0,rows,k);
464
+ BlockType A_2 = lu.block(0,k+bs,rows,tsize);
465
+ BlockType A11 = lu.block(k,k,bs,bs);
466
+ BlockType A12 = lu.block(k,k+bs,bs,tsize);
467
+ BlockType A21 = lu.block(k+bs,k,trows,bs);
468
+ BlockType A22 = lu.block(k+bs,k+bs,trows,tsize);
469
+
470
+ PivIndex nb_transpositions_in_panel;
471
+ // recursively call the blocked LU algorithm on [A11^T A21^T]^T
472
+ // with a very small blocking size:
473
+ Index ret = blocked_lu(trows+bs, bs, &lu.coeffRef(k,k), luStride,
474
+ row_transpositions+k, nb_transpositions_in_panel, 16);
475
+ if(ret>=0 && first_zero_pivot==-1)
476
+ first_zero_pivot = k+ret;
477
+
478
+ nb_transpositions += nb_transpositions_in_panel;
479
+ // update permutations and apply them to A_0
480
+ for(Index i=k; i<k+bs; ++i)
481
+ {
482
+ Index piv = (row_transpositions[i] += internal::convert_index<PivIndex>(k));
483
+ A_0.row(i).swap(A_0.row(piv));
484
+ }
485
+
486
+ if(trows)
487
+ {
488
+ // apply permutations to A_2
489
+ for(Index i=k;i<k+bs; ++i)
490
+ A_2.row(i).swap(A_2.row(row_transpositions[i]));
491
+
492
+ // A12 = A11^-1 A12
493
+ A11.template triangularView<UnitLower>().solveInPlace(A12);
494
+
495
+ A22.noalias() -= A21 * A12;
496
+ }
497
+ }
498
+ return first_zero_pivot;
499
+ }
500
+ };
501
+
502
+ /** \internal performs the LU decomposition with partial pivoting in-place.
503
+ */
504
+ template<typename MatrixType, typename TranspositionType>
505
+ void partial_lu_inplace(MatrixType& lu, TranspositionType& row_transpositions, typename TranspositionType::StorageIndex& nb_transpositions)
506
+ {
507
+ // Special-case of zero matrix.
508
+ if (lu.rows() == 0 || lu.cols() == 0) {
509
+ nb_transpositions = 0;
510
+ return;
511
+ }
512
+ eigen_assert(lu.cols() == row_transpositions.size());
513
+ eigen_assert(row_transpositions.size() < 2 || (&row_transpositions.coeffRef(1)-&row_transpositions.coeffRef(0)) == 1);
514
+
515
+ partial_lu_impl
516
+ < typename MatrixType::Scalar, MatrixType::Flags&RowMajorBit?RowMajor:ColMajor,
517
+ typename TranspositionType::StorageIndex,
518
+ EIGEN_SIZE_MIN_PREFER_FIXED(MatrixType::RowsAtCompileTime,MatrixType::ColsAtCompileTime)>
519
+ ::blocked_lu(lu.rows(), lu.cols(), &lu.coeffRef(0,0), lu.outerStride(), &row_transpositions.coeffRef(0), nb_transpositions);
520
+ }
521
+
522
+ } // end namespace internal
523
+
524
+ template<typename MatrixType>
525
+ void PartialPivLU<MatrixType>::compute()
526
+ {
527
+ check_template_parameters();
528
+
529
+ // the row permutation is stored as int indices, so just to be sure:
530
+ eigen_assert(m_lu.rows()<NumTraits<int>::highest());
531
+
532
+ if(m_lu.cols()>0)
533
+ m_l1_norm = m_lu.cwiseAbs().colwise().sum().maxCoeff();
534
+ else
535
+ m_l1_norm = RealScalar(0);
536
+
537
+ eigen_assert(m_lu.rows() == m_lu.cols() && "PartialPivLU is only for square (and moreover invertible) matrices");
538
+ const Index size = m_lu.rows();
539
+
540
+ m_rowsTranspositions.resize(size);
541
+
542
+ typename TranspositionType::StorageIndex nb_transpositions;
543
+ internal::partial_lu_inplace(m_lu, m_rowsTranspositions, nb_transpositions);
544
+ m_det_p = (nb_transpositions%2) ? -1 : 1;
545
+
546
+ m_p = m_rowsTranspositions;
547
+
548
+ m_isInitialized = true;
549
+ }
550
+
551
+ template<typename MatrixType>
552
+ typename PartialPivLU<MatrixType>::Scalar PartialPivLU<MatrixType>::determinant() const
553
+ {
554
+ eigen_assert(m_isInitialized && "PartialPivLU is not initialized.");
555
+ return Scalar(m_det_p) * m_lu.diagonal().prod();
556
+ }
557
+
558
+ /** \returns the matrix represented by the decomposition,
559
+ * i.e., it returns the product: P^{-1} L U.
560
+ * This function is provided for debug purpose. */
561
+ template<typename MatrixType>
562
+ MatrixType PartialPivLU<MatrixType>::reconstructedMatrix() const
563
+ {
564
+ eigen_assert(m_isInitialized && "LU is not initialized.");
565
+ // LU
566
+ MatrixType res = m_lu.template triangularView<UnitLower>().toDenseMatrix()
567
+ * m_lu.template triangularView<Upper>();
568
+
569
+ // P^{-1}(LU)
570
+ res = m_p.inverse() * res;
571
+
572
+ return res;
573
+ }
574
+
575
+ /***** Implementation details *****************************************************/
576
+
577
+ namespace internal {
578
+
579
+ /***** Implementation of inverse() *****************************************************/
580
+ template<typename DstXprType, typename MatrixType>
581
+ struct Assignment<DstXprType, Inverse<PartialPivLU<MatrixType> >, internal::assign_op<typename DstXprType::Scalar,typename PartialPivLU<MatrixType>::Scalar>, Dense2Dense>
582
+ {
583
+ typedef PartialPivLU<MatrixType> LuType;
584
+ typedef Inverse<LuType> SrcXprType;
585
+ static void run(DstXprType &dst, const SrcXprType &src, const internal::assign_op<typename DstXprType::Scalar,typename LuType::Scalar> &)
586
+ {
587
+ dst = src.nestedExpression().solve(MatrixType::Identity(src.rows(), src.cols()));
588
+ }
589
+ };
590
+ } // end namespace internal
591
+
592
+ /******** MatrixBase methods *******/
593
+
594
+ /** \lu_module
595
+ *
596
+ * \return the partial-pivoting LU decomposition of \c *this.
597
+ *
598
+ * \sa class PartialPivLU
599
+ */
600
+ template<typename Derived>
601
+ inline const PartialPivLU<typename MatrixBase<Derived>::PlainObject>
602
+ MatrixBase<Derived>::partialPivLu() const
603
+ {
604
+ return PartialPivLU<PlainObject>(eval());
605
+ }
606
+
607
+ /** \lu_module
608
+ *
609
+ * Synonym of partialPivLu().
610
+ *
611
+ * \return the partial-pivoting LU decomposition of \c *this.
612
+ *
613
+ * \sa class PartialPivLU
614
+ */
615
+ template<typename Derived>
616
+ inline const PartialPivLU<typename MatrixBase<Derived>::PlainObject>
617
+ MatrixBase<Derived>::lu() const
618
+ {
619
+ return PartialPivLU<PlainObject>(eval());
620
+ }
621
+
622
+ } // end namespace Eigen
623
+
624
+ #endif // EIGEN_PARTIALLU_H
@@ -0,0 +1,83 @@
1
+ /*
2
+ Copyright (c) 2011, Intel Corporation. All rights reserved.
3
+
4
+ Redistribution and use in source and binary forms, with or without modification,
5
+ are permitted provided that the following conditions are met:
6
+
7
+ * Redistributions of source code must retain the above copyright notice, this
8
+ list of conditions and the following disclaimer.
9
+ * Redistributions in binary form must reproduce the above copyright notice,
10
+ this list of conditions and the following disclaimer in the documentation
11
+ and/or other materials provided with the distribution.
12
+ * Neither the name of Intel Corporation nor the names of its contributors may
13
+ be used to endorse or promote products derived from this software without
14
+ specific prior written permission.
15
+
16
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
17
+ ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
18
+ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
19
+ DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
20
+ ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
21
+ (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
22
+ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
23
+ ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
24
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
25
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
26
+
27
+ ********************************************************************************
28
+ * Content : Eigen bindings to LAPACKe
29
+ * LU decomposition with partial pivoting based on LAPACKE_?getrf function.
30
+ ********************************************************************************
31
+ */
32
+
33
+ #ifndef EIGEN_PARTIALLU_LAPACK_H
34
+ #define EIGEN_PARTIALLU_LAPACK_H
35
+
36
+ namespace Eigen {
37
+
38
+ namespace internal {
39
+
40
+ /** \internal Specialization for the data types supported by LAPACKe */
41
+
42
+ #define EIGEN_LAPACKE_LU_PARTPIV(EIGTYPE, LAPACKE_TYPE, LAPACKE_PREFIX) \
43
+ template<int StorageOrder> \
44
+ struct partial_lu_impl<EIGTYPE, StorageOrder, lapack_int> \
45
+ { \
46
+ /* \internal performs the LU decomposition in-place of the matrix represented */ \
47
+ static lapack_int blocked_lu(Index rows, Index cols, EIGTYPE* lu_data, Index luStride, lapack_int* row_transpositions, lapack_int& nb_transpositions, lapack_int maxBlockSize=256) \
48
+ { \
49
+ EIGEN_UNUSED_VARIABLE(maxBlockSize);\
50
+ lapack_int matrix_order, first_zero_pivot; \
51
+ lapack_int m, n, lda, *ipiv, info; \
52
+ EIGTYPE* a; \
53
+ /* Set up parameters for ?getrf */ \
54
+ matrix_order = StorageOrder==RowMajor ? LAPACK_ROW_MAJOR : LAPACK_COL_MAJOR; \
55
+ lda = convert_index<lapack_int>(luStride); \
56
+ a = lu_data; \
57
+ ipiv = row_transpositions; \
58
+ m = convert_index<lapack_int>(rows); \
59
+ n = convert_index<lapack_int>(cols); \
60
+ nb_transpositions = 0; \
61
+ \
62
+ info = LAPACKE_##LAPACKE_PREFIX##getrf( matrix_order, m, n, (LAPACKE_TYPE*)a, lda, ipiv ); \
63
+ \
64
+ for(int i=0;i<m;i++) { ipiv[i]--; if (ipiv[i]!=i) nb_transpositions++; } \
65
+ \
66
+ eigen_assert(info >= 0); \
67
+ /* something should be done with nb_transpositions */ \
68
+ \
69
+ first_zero_pivot = info; \
70
+ return first_zero_pivot; \
71
+ } \
72
+ };
73
+
74
+ EIGEN_LAPACKE_LU_PARTPIV(double, double, d)
75
+ EIGEN_LAPACKE_LU_PARTPIV(float, float, s)
76
+ EIGEN_LAPACKE_LU_PARTPIV(dcomplex, lapack_complex_double, z)
77
+ EIGEN_LAPACKE_LU_PARTPIV(scomplex, lapack_complex_float, c)
78
+
79
+ } // end namespace internal
80
+
81
+ } // end namespace Eigen
82
+
83
+ #endif // EIGEN_PARTIALLU_LAPACK_H