umappp 0.1.2
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- checksums.yaml +7 -0
- data/LICENSE.txt +25 -0
- data/README.md +110 -0
- data/ext/umappp/extconf.rb +25 -0
- data/ext/umappp/numo.hpp +867 -0
- data/ext/umappp/umappp.cpp +225 -0
- data/lib/umappp/version.rb +5 -0
- data/lib/umappp.rb +41 -0
- data/vendor/Eigen/Cholesky +45 -0
- data/vendor/Eigen/CholmodSupport +48 -0
- data/vendor/Eigen/Core +384 -0
- data/vendor/Eigen/Dense +7 -0
- data/vendor/Eigen/Eigen +2 -0
- data/vendor/Eigen/Eigenvalues +60 -0
- data/vendor/Eigen/Geometry +59 -0
- data/vendor/Eigen/Householder +29 -0
- data/vendor/Eigen/IterativeLinearSolvers +48 -0
- data/vendor/Eigen/Jacobi +32 -0
- data/vendor/Eigen/KLUSupport +41 -0
- data/vendor/Eigen/LU +47 -0
- data/vendor/Eigen/MetisSupport +35 -0
- data/vendor/Eigen/OrderingMethods +70 -0
- data/vendor/Eigen/PaStiXSupport +49 -0
- data/vendor/Eigen/PardisoSupport +35 -0
- data/vendor/Eigen/QR +50 -0
- data/vendor/Eigen/QtAlignedMalloc +39 -0
- data/vendor/Eigen/SPQRSupport +34 -0
- data/vendor/Eigen/SVD +50 -0
- data/vendor/Eigen/Sparse +34 -0
- data/vendor/Eigen/SparseCholesky +37 -0
- data/vendor/Eigen/SparseCore +69 -0
- data/vendor/Eigen/SparseLU +50 -0
- data/vendor/Eigen/SparseQR +36 -0
- data/vendor/Eigen/StdDeque +27 -0
- data/vendor/Eigen/StdList +26 -0
- data/vendor/Eigen/StdVector +27 -0
- data/vendor/Eigen/SuperLUSupport +64 -0
- data/vendor/Eigen/UmfPackSupport +40 -0
- data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
- data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
- data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
- data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
- data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
- data/vendor/Eigen/src/Core/Array.h +417 -0
- data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
- data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
- data/vendor/Eigen/src/Core/Assign.h +90 -0
- data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
- data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
- data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
- data/vendor/Eigen/src/Core/Block.h +448 -0
- data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
- data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
- data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
- data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
- data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
- data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
- data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
- data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
- data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
- data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
- data/vendor/Eigen/src/Core/DenseBase.h +701 -0
- data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
- data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
- data/vendor/Eigen/src/Core/Diagonal.h +258 -0
- data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
- data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
- data/vendor/Eigen/src/Core/Dot.h +318 -0
- data/vendor/Eigen/src/Core/EigenBase.h +160 -0
- data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
- data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
- data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
- data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
- data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
- data/vendor/Eigen/src/Core/IO.h +258 -0
- data/vendor/Eigen/src/Core/IndexedView.h +237 -0
- data/vendor/Eigen/src/Core/Inverse.h +117 -0
- data/vendor/Eigen/src/Core/Map.h +171 -0
- data/vendor/Eigen/src/Core/MapBase.h +310 -0
- data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
- data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
- data/vendor/Eigen/src/Core/Matrix.h +565 -0
- data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
- data/vendor/Eigen/src/Core/NestByValue.h +85 -0
- data/vendor/Eigen/src/Core/NoAlias.h +109 -0
- data/vendor/Eigen/src/Core/NumTraits.h +335 -0
- data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
- data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
- data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
- data/vendor/Eigen/src/Core/Product.h +191 -0
- data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
- data/vendor/Eigen/src/Core/Random.h +218 -0
- data/vendor/Eigen/src/Core/Redux.h +515 -0
- data/vendor/Eigen/src/Core/Ref.h +381 -0
- data/vendor/Eigen/src/Core/Replicate.h +142 -0
- data/vendor/Eigen/src/Core/Reshaped.h +454 -0
- data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
- data/vendor/Eigen/src/Core/Reverse.h +217 -0
- data/vendor/Eigen/src/Core/Select.h +164 -0
- data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
- data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
- data/vendor/Eigen/src/Core/Solve.h +188 -0
- data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
- data/vendor/Eigen/src/Core/SolverBase.h +168 -0
- data/vendor/Eigen/src/Core/StableNorm.h +251 -0
- data/vendor/Eigen/src/Core/StlIterators.h +463 -0
- data/vendor/Eigen/src/Core/Stride.h +116 -0
- data/vendor/Eigen/src/Core/Swap.h +68 -0
- data/vendor/Eigen/src/Core/Transpose.h +464 -0
- data/vendor/Eigen/src/Core/Transpositions.h +386 -0
- data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
- data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
- data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
- data/vendor/Eigen/src/Core/Visitor.h +381 -0
- data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
- data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
- data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
- data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
- data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
- data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
- data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
- data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
- data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
- data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
- data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
- data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
- data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
- data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
- data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
- data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
- data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
- data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
- data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
- data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
- data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
- data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
- data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
- data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
- data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
- data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
- data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
- data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
- data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
- data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
- data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
- data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
- data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
- data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
- data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
- data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
- data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
- data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
- data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
- data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
- data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
- data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
- data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
- data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
- data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
- data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
- data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
- data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
- data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
- data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
- data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
- data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
- data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
- data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
- data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
- data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
- data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
- data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
- data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
- data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
- data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
- data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
- data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
- data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
- data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
- data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
- data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
- data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
- data/vendor/Eigen/src/Core/util/Constants.h +563 -0
- data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
- data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
- data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
- data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
- data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
- data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
- data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
- data/vendor/Eigen/src/Core/util/Meta.h +812 -0
- data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
- data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
- data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
- data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
- data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
- data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
- data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
- data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
- data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
- data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
- data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
- data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
- data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
- data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
- data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
- data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
- data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
- data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
- data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
- data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
- data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
- data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
- data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
- data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
- data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
- data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
- data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
- data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
- data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
- data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
- data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
- data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
- data/vendor/Eigen/src/Geometry/Translation.h +202 -0
- data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
- data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
- data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
- data/vendor/Eigen/src/Householder/Householder.h +176 -0
- data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
- data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
- data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
- data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
- data/vendor/Eigen/src/LU/Determinant.h +117 -0
- data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
- data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
- data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
- data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
- data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
- data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
- data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
- data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
- data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
- data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
- data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
- data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
- data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
- data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
- data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
- data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
- data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
- data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
- data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
- data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
- data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
- data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
- data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
- data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
- data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
- data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
- data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
- data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
- data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
- data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
- data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
- data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
- data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
- data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
- data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
- data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
- data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
- data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
- data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
- data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
- data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
- data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
- data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
- data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
- data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
- data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
- data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
- data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
- data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
- data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
- data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
- data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
- data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
- data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
- data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
- data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
- data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
- data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
- data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
- data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
- data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
- data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
- data/vendor/Eigen/src/StlSupport/details.h +84 -0
- data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
- data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
- data/vendor/Eigen/src/misc/Image.h +82 -0
- data/vendor/Eigen/src/misc/Kernel.h +79 -0
- data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
- data/vendor/Eigen/src/misc/blas.h +440 -0
- data/vendor/Eigen/src/misc/lapack.h +152 -0
- data/vendor/Eigen/src/misc/lapacke.h +16292 -0
- data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
- data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
- data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
- data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
- data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
- data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
- data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
- data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
- data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
- data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
- data/vendor/aarand/aarand.hpp +114 -0
- data/vendor/annoy/annoylib.h +1495 -0
- data/vendor/annoy/kissrandom.h +120 -0
- data/vendor/annoy/mman.h +242 -0
- data/vendor/hnswlib/bruteforce.h +152 -0
- data/vendor/hnswlib/hnswalg.h +1192 -0
- data/vendor/hnswlib/hnswlib.h +108 -0
- data/vendor/hnswlib/space_ip.h +282 -0
- data/vendor/hnswlib/space_l2.h +281 -0
- data/vendor/hnswlib/visited_list_pool.h +79 -0
- data/vendor/irlba/irlba.hpp +575 -0
- data/vendor/irlba/lanczos.hpp +212 -0
- data/vendor/irlba/parallel.hpp +474 -0
- data/vendor/irlba/utils.hpp +224 -0
- data/vendor/irlba/wrappers.hpp +228 -0
- data/vendor/kmeans/Base.hpp +75 -0
- data/vendor/kmeans/Details.hpp +79 -0
- data/vendor/kmeans/HartiganWong.hpp +492 -0
- data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
- data/vendor/kmeans/InitializeNone.hpp +44 -0
- data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
- data/vendor/kmeans/InitializeRandom.hpp +91 -0
- data/vendor/kmeans/Kmeans.hpp +161 -0
- data/vendor/kmeans/Lloyd.hpp +134 -0
- data/vendor/kmeans/MiniBatch.hpp +269 -0
- data/vendor/kmeans/QuickSearch.hpp +179 -0
- data/vendor/kmeans/compute_centroids.hpp +32 -0
- data/vendor/kmeans/compute_wcss.hpp +27 -0
- data/vendor/kmeans/is_edge_case.hpp +42 -0
- data/vendor/kmeans/random.hpp +55 -0
- data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
- data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
- data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
- data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
- data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
- data/vendor/knncolle/knncolle.hpp +34 -0
- data/vendor/knncolle/utils/Base.hpp +100 -0
- data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
- data/vendor/knncolle/utils/distances.hpp +98 -0
- data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
- data/vendor/powerit/PowerIterations.hpp +157 -0
- data/vendor/umappp/NeighborList.hpp +37 -0
- data/vendor/umappp/Umap.hpp +662 -0
- data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
- data/vendor/umappp/find_ab.hpp +157 -0
- data/vendor/umappp/neighbor_similarities.hpp +136 -0
- data/vendor/umappp/optimize_layout.hpp +285 -0
- data/vendor/umappp/spectral_init.hpp +181 -0
- data/vendor/umappp/umappp.hpp +13 -0
- metadata +465 -0
@@ -0,0 +1,117 @@
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// This file is part of Eigen, a lightweight C++ template library
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// for linear algebra.
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//
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// Copyright (C) 2014 Gael Guennebaud <gael.guennebaud@inria.fr>
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//
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// This Source Code Form is subject to the terms of the Mozilla
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// Public License v. 2.0. If a copy of the MPL was not distributed
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// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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#ifndef EIGEN_SOLVEWITHGUESS_H
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#define EIGEN_SOLVEWITHGUESS_H
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namespace Eigen {
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template<typename Decomposition, typename RhsType, typename GuessType> class SolveWithGuess;
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/** \class SolveWithGuess
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* \ingroup IterativeLinearSolvers_Module
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*
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* \brief Pseudo expression representing a solving operation
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*
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* \tparam Decomposition the type of the matrix or decomposion object
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* \tparam Rhstype the type of the right-hand side
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*
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* This class represents an expression of A.solve(B)
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* and most of the time this is the only way it is used.
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*
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*/
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namespace internal {
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template<typename Decomposition, typename RhsType, typename GuessType>
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struct traits<SolveWithGuess<Decomposition, RhsType, GuessType> >
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: traits<Solve<Decomposition,RhsType> >
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{};
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}
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template<typename Decomposition, typename RhsType, typename GuessType>
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class SolveWithGuess : public internal::generic_xpr_base<SolveWithGuess<Decomposition,RhsType,GuessType>, MatrixXpr, typename internal::traits<RhsType>::StorageKind>::type
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{
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public:
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typedef typename internal::traits<SolveWithGuess>::Scalar Scalar;
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typedef typename internal::traits<SolveWithGuess>::PlainObject PlainObject;
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typedef typename internal::generic_xpr_base<SolveWithGuess<Decomposition,RhsType,GuessType>, MatrixXpr, typename internal::traits<RhsType>::StorageKind>::type Base;
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typedef typename internal::ref_selector<SolveWithGuess>::type Nested;
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SolveWithGuess(const Decomposition &dec, const RhsType &rhs, const GuessType &guess)
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: m_dec(dec), m_rhs(rhs), m_guess(guess)
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{}
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EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
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Index rows() const EIGEN_NOEXCEPT { return m_dec.cols(); }
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EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
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Index cols() const EIGEN_NOEXCEPT { return m_rhs.cols(); }
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EIGEN_DEVICE_FUNC const Decomposition& dec() const { return m_dec; }
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EIGEN_DEVICE_FUNC const RhsType& rhs() const { return m_rhs; }
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EIGEN_DEVICE_FUNC const GuessType& guess() const { return m_guess; }
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protected:
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const Decomposition &m_dec;
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const RhsType &m_rhs;
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const GuessType &m_guess;
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private:
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Scalar coeff(Index row, Index col) const;
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Scalar coeff(Index i) const;
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};
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namespace internal {
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// Evaluator of SolveWithGuess -> eval into a temporary
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template<typename Decomposition, typename RhsType, typename GuessType>
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struct evaluator<SolveWithGuess<Decomposition,RhsType, GuessType> >
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: public evaluator<typename SolveWithGuess<Decomposition,RhsType,GuessType>::PlainObject>
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{
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typedef SolveWithGuess<Decomposition,RhsType,GuessType> SolveType;
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typedef typename SolveType::PlainObject PlainObject;
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typedef evaluator<PlainObject> Base;
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evaluator(const SolveType& solve)
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: m_result(solve.rows(), solve.cols())
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{
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::new (static_cast<Base*>(this)) Base(m_result);
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m_result = solve.guess();
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solve.dec()._solve_with_guess_impl(solve.rhs(), m_result);
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}
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protected:
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PlainObject m_result;
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};
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// Specialization for "dst = dec.solveWithGuess(rhs)"
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// NOTE we need to specialize it for Dense2Dense to avoid ambiguous specialization error and a Sparse2Sparse specialization must exist somewhere
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template<typename DstXprType, typename DecType, typename RhsType, typename GuessType, typename Scalar>
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struct Assignment<DstXprType, SolveWithGuess<DecType,RhsType,GuessType>, internal::assign_op<Scalar,Scalar>, Dense2Dense>
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{
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typedef SolveWithGuess<DecType,RhsType,GuessType> SrcXprType;
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static void run(DstXprType &dst, const SrcXprType &src, const internal::assign_op<Scalar,Scalar> &)
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{
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Index dstRows = src.rows();
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Index dstCols = src.cols();
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if((dst.rows()!=dstRows) || (dst.cols()!=dstCols))
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dst.resize(dstRows, dstCols);
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dst = src.guess();
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src.dec()._solve_with_guess_impl(src.rhs(), dst/*, src.guess()*/);
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}
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};
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} // end namespace internal
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} // end namespace Eigen
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#endif // EIGEN_SOLVEWITHGUESS_H
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// This file is part of Eigen, a lightweight C++ template library
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// for linear algebra.
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//
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// Copyright (C) 2009 Benoit Jacob <jacob.benoit.1@gmail.com>
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// Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
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//
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// This Source Code Form is subject to the terms of the Mozilla
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// Public License v. 2.0. If a copy of the MPL was not distributed
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// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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#ifndef EIGEN_JACOBI_H
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#define EIGEN_JACOBI_H
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namespace Eigen {
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/** \ingroup Jacobi_Module
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* \jacobi_module
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* \class JacobiRotation
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* \brief Rotation given by a cosine-sine pair.
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*
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* This class represents a Jacobi or Givens rotation.
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* This is a 2D rotation in the plane \c J of angle \f$ \theta \f$ defined by
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* its cosine \c c and sine \c s as follow:
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* \f$ J = \left ( \begin{array}{cc} c & \overline s \\ -s & \overline c \end{array} \right ) \f$
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*
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* You can apply the respective counter-clockwise rotation to a column vector \c v by
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* applying its adjoint on the left: \f$ v = J^* v \f$ that translates to the following Eigen code:
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* \code
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* v.applyOnTheLeft(J.adjoint());
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* \endcode
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*
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* \sa MatrixBase::applyOnTheLeft(), MatrixBase::applyOnTheRight()
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*/
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template<typename Scalar> class JacobiRotation
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{
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public:
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typedef typename NumTraits<Scalar>::Real RealScalar;
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/** Default constructor without any initialization. */
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EIGEN_DEVICE_FUNC
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JacobiRotation() {}
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/** Construct a planar rotation from a cosine-sine pair (\a c, \c s). */
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EIGEN_DEVICE_FUNC
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JacobiRotation(const Scalar& c, const Scalar& s) : m_c(c), m_s(s) {}
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EIGEN_DEVICE_FUNC Scalar& c() { return m_c; }
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EIGEN_DEVICE_FUNC Scalar c() const { return m_c; }
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EIGEN_DEVICE_FUNC Scalar& s() { return m_s; }
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EIGEN_DEVICE_FUNC Scalar s() const { return m_s; }
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/** Concatenates two planar rotation */
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EIGEN_DEVICE_FUNC
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JacobiRotation operator*(const JacobiRotation& other)
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{
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using numext::conj;
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return JacobiRotation(m_c * other.m_c - conj(m_s) * other.m_s,
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conj(m_c * conj(other.m_s) + conj(m_s) * conj(other.m_c)));
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}
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/** Returns the transposed transformation */
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EIGEN_DEVICE_FUNC
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JacobiRotation transpose() const { using numext::conj; return JacobiRotation(m_c, -conj(m_s)); }
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/** Returns the adjoint transformation */
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EIGEN_DEVICE_FUNC
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JacobiRotation adjoint() const { using numext::conj; return JacobiRotation(conj(m_c), -m_s); }
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template<typename Derived>
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EIGEN_DEVICE_FUNC
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bool makeJacobi(const MatrixBase<Derived>&, Index p, Index q);
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EIGEN_DEVICE_FUNC
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bool makeJacobi(const RealScalar& x, const Scalar& y, const RealScalar& z);
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EIGEN_DEVICE_FUNC
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void makeGivens(const Scalar& p, const Scalar& q, Scalar* r=0);
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protected:
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EIGEN_DEVICE_FUNC
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void makeGivens(const Scalar& p, const Scalar& q, Scalar* r, internal::true_type);
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EIGEN_DEVICE_FUNC
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void makeGivens(const Scalar& p, const Scalar& q, Scalar* r, internal::false_type);
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Scalar m_c, m_s;
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};
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/** Makes \c *this as a Jacobi rotation \a J such that applying \a J on both the right and left sides of the selfadjoint 2x2 matrix
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* \f$ B = \left ( \begin{array}{cc} x & y \\ \overline y & z \end{array} \right )\f$ yields a diagonal matrix \f$ A = J^* B J \f$
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*
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* \sa MatrixBase::makeJacobi(const MatrixBase<Derived>&, Index, Index), MatrixBase::applyOnTheLeft(), MatrixBase::applyOnTheRight()
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*/
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template<typename Scalar>
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EIGEN_DEVICE_FUNC
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bool JacobiRotation<Scalar>::makeJacobi(const RealScalar& x, const Scalar& y, const RealScalar& z)
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{
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using std::sqrt;
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using std::abs;
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RealScalar deno = RealScalar(2)*abs(y);
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if(deno < (std::numeric_limits<RealScalar>::min)())
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{
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m_c = Scalar(1);
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m_s = Scalar(0);
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return false;
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}
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else
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{
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RealScalar tau = (x-z)/deno;
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RealScalar w = sqrt(numext::abs2(tau) + RealScalar(1));
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RealScalar t;
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if(tau>RealScalar(0))
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{
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t = RealScalar(1) / (tau + w);
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}
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else
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{
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t = RealScalar(1) / (tau - w);
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}
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RealScalar sign_t = t > RealScalar(0) ? RealScalar(1) : RealScalar(-1);
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RealScalar n = RealScalar(1) / sqrt(numext::abs2(t)+RealScalar(1));
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m_s = - sign_t * (numext::conj(y) / abs(y)) * abs(t) * n;
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m_c = n;
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return true;
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}
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}
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/** Makes \c *this as a Jacobi rotation \c J such that applying \a J on both the right and left sides of the 2x2 selfadjoint matrix
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* \f$ B = \left ( \begin{array}{cc} \text{this}_{pp} & \text{this}_{pq} \\ (\text{this}_{pq})^* & \text{this}_{qq} \end{array} \right )\f$ yields
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* a diagonal matrix \f$ A = J^* B J \f$
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*
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* Example: \include Jacobi_makeJacobi.cpp
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* Output: \verbinclude Jacobi_makeJacobi.out
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*
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* \sa JacobiRotation::makeJacobi(RealScalar, Scalar, RealScalar), MatrixBase::applyOnTheLeft(), MatrixBase::applyOnTheRight()
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*/
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template<typename Scalar>
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template<typename Derived>
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EIGEN_DEVICE_FUNC
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inline bool JacobiRotation<Scalar>::makeJacobi(const MatrixBase<Derived>& m, Index p, Index q)
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{
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return makeJacobi(numext::real(m.coeff(p,p)), m.coeff(p,q), numext::real(m.coeff(q,q)));
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}
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/** Makes \c *this as a Givens rotation \c G such that applying \f$ G^* \f$ to the left of the vector
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* \f$ V = \left ( \begin{array}{c} p \\ q \end{array} \right )\f$ yields:
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* \f$ G^* V = \left ( \begin{array}{c} r \\ 0 \end{array} \right )\f$.
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*
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* The value of \a r is returned if \a r is not null (the default is null).
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* Also note that G is built such that the cosine is always real.
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*
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* Example: \include Jacobi_makeGivens.cpp
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* Output: \verbinclude Jacobi_makeGivens.out
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*
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* This function implements the continuous Givens rotation generation algorithm
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* found in Anderson (2000), Discontinuous Plane Rotations and the Symmetric Eigenvalue Problem.
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156
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* LAPACK Working Note 150, University of Tennessee, UT-CS-00-454, December 4, 2000.
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*
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158
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* \sa MatrixBase::applyOnTheLeft(), MatrixBase::applyOnTheRight()
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+
*/
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template<typename Scalar>
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EIGEN_DEVICE_FUNC
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void JacobiRotation<Scalar>::makeGivens(const Scalar& p, const Scalar& q, Scalar* r)
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{
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makeGivens(p, q, r, typename internal::conditional<NumTraits<Scalar>::IsComplex, internal::true_type, internal::false_type>::type());
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}
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+
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+
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// specialization for complexes
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template<typename Scalar>
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EIGEN_DEVICE_FUNC
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void JacobiRotation<Scalar>::makeGivens(const Scalar& p, const Scalar& q, Scalar* r, internal::true_type)
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{
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+
using std::sqrt;
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using std::abs;
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using numext::conj;
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+
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if(q==Scalar(0))
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{
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m_c = numext::real(p)<0 ? Scalar(-1) : Scalar(1);
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m_s = 0;
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if(r) *r = m_c * p;
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+
}
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+
else if(p==Scalar(0))
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{
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m_c = 0;
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m_s = -q/abs(q);
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if(r) *r = abs(q);
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+
}
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else
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{
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+
RealScalar p1 = numext::norm1(p);
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RealScalar q1 = numext::norm1(q);
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if(p1>=q1)
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{
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Scalar ps = p / p1;
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RealScalar p2 = numext::abs2(ps);
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Scalar qs = q / p1;
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RealScalar q2 = numext::abs2(qs);
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+
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+
RealScalar u = sqrt(RealScalar(1) + q2/p2);
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+
if(numext::real(p)<RealScalar(0))
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+
u = -u;
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+
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+
m_c = Scalar(1)/u;
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+
m_s = -qs*conj(ps)*(m_c/p2);
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+
if(r) *r = p * u;
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+
}
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+
else
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+
{
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210
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Scalar ps = p / q1;
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+
RealScalar p2 = numext::abs2(ps);
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+
Scalar qs = q / q1;
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+
RealScalar q2 = numext::abs2(qs);
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214
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+
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+
RealScalar u = q1 * sqrt(p2 + q2);
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216
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+
if(numext::real(p)<RealScalar(0))
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+
u = -u;
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218
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+
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+
p1 = abs(p);
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+
ps = p/p1;
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+
m_c = p1/u;
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+
m_s = -conj(ps) * (q/u);
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+
if(r) *r = ps * u;
|
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+
}
|
225
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+
}
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+
}
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227
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+
|
228
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+
// specialization for reals
|
229
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+
template<typename Scalar>
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230
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+
EIGEN_DEVICE_FUNC
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231
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+
void JacobiRotation<Scalar>::makeGivens(const Scalar& p, const Scalar& q, Scalar* r, internal::false_type)
|
232
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+
{
|
233
|
+
using std::sqrt;
|
234
|
+
using std::abs;
|
235
|
+
if(q==Scalar(0))
|
236
|
+
{
|
237
|
+
m_c = p<Scalar(0) ? Scalar(-1) : Scalar(1);
|
238
|
+
m_s = Scalar(0);
|
239
|
+
if(r) *r = abs(p);
|
240
|
+
}
|
241
|
+
else if(p==Scalar(0))
|
242
|
+
{
|
243
|
+
m_c = Scalar(0);
|
244
|
+
m_s = q<Scalar(0) ? Scalar(1) : Scalar(-1);
|
245
|
+
if(r) *r = abs(q);
|
246
|
+
}
|
247
|
+
else if(abs(p) > abs(q))
|
248
|
+
{
|
249
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+
Scalar t = q/p;
|
250
|
+
Scalar u = sqrt(Scalar(1) + numext::abs2(t));
|
251
|
+
if(p<Scalar(0))
|
252
|
+
u = -u;
|
253
|
+
m_c = Scalar(1)/u;
|
254
|
+
m_s = -t * m_c;
|
255
|
+
if(r) *r = p * u;
|
256
|
+
}
|
257
|
+
else
|
258
|
+
{
|
259
|
+
Scalar t = p/q;
|
260
|
+
Scalar u = sqrt(Scalar(1) + numext::abs2(t));
|
261
|
+
if(q<Scalar(0))
|
262
|
+
u = -u;
|
263
|
+
m_s = -Scalar(1)/u;
|
264
|
+
m_c = -t * m_s;
|
265
|
+
if(r) *r = q * u;
|
266
|
+
}
|
267
|
+
|
268
|
+
}
|
269
|
+
|
270
|
+
/****************************************************************************************
|
271
|
+
* Implementation of MatrixBase methods
|
272
|
+
****************************************************************************************/
|
273
|
+
|
274
|
+
namespace internal {
|
275
|
+
/** \jacobi_module
|
276
|
+
* Applies the clock wise 2D rotation \a j to the set of 2D vectors of coordinates \a x and \a y:
|
277
|
+
* \f$ \left ( \begin{array}{cc} x \\ y \end{array} \right ) = J \left ( \begin{array}{cc} x \\ y \end{array} \right ) \f$
|
278
|
+
*
|
279
|
+
* \sa MatrixBase::applyOnTheLeft(), MatrixBase::applyOnTheRight()
|
280
|
+
*/
|
281
|
+
template<typename VectorX, typename VectorY, typename OtherScalar>
|
282
|
+
EIGEN_DEVICE_FUNC
|
283
|
+
void apply_rotation_in_the_plane(DenseBase<VectorX>& xpr_x, DenseBase<VectorY>& xpr_y, const JacobiRotation<OtherScalar>& j);
|
284
|
+
}
|
285
|
+
|
286
|
+
/** \jacobi_module
|
287
|
+
* Applies the rotation in the plane \a j to the rows \a p and \a q of \c *this, i.e., it computes B = J * B,
|
288
|
+
* with \f$ B = \left ( \begin{array}{cc} \text{*this.row}(p) \\ \text{*this.row}(q) \end{array} \right ) \f$.
|
289
|
+
*
|
290
|
+
* \sa class JacobiRotation, MatrixBase::applyOnTheRight(), internal::apply_rotation_in_the_plane()
|
291
|
+
*/
|
292
|
+
template<typename Derived>
|
293
|
+
template<typename OtherScalar>
|
294
|
+
EIGEN_DEVICE_FUNC
|
295
|
+
inline void MatrixBase<Derived>::applyOnTheLeft(Index p, Index q, const JacobiRotation<OtherScalar>& j)
|
296
|
+
{
|
297
|
+
RowXpr x(this->row(p));
|
298
|
+
RowXpr y(this->row(q));
|
299
|
+
internal::apply_rotation_in_the_plane(x, y, j);
|
300
|
+
}
|
301
|
+
|
302
|
+
/** \ingroup Jacobi_Module
|
303
|
+
* Applies the rotation in the plane \a j to the columns \a p and \a q of \c *this, i.e., it computes B = B * J
|
304
|
+
* with \f$ B = \left ( \begin{array}{cc} \text{*this.col}(p) & \text{*this.col}(q) \end{array} \right ) \f$.
|
305
|
+
*
|
306
|
+
* \sa class JacobiRotation, MatrixBase::applyOnTheLeft(), internal::apply_rotation_in_the_plane()
|
307
|
+
*/
|
308
|
+
template<typename Derived>
|
309
|
+
template<typename OtherScalar>
|
310
|
+
EIGEN_DEVICE_FUNC
|
311
|
+
inline void MatrixBase<Derived>::applyOnTheRight(Index p, Index q, const JacobiRotation<OtherScalar>& j)
|
312
|
+
{
|
313
|
+
ColXpr x(this->col(p));
|
314
|
+
ColXpr y(this->col(q));
|
315
|
+
internal::apply_rotation_in_the_plane(x, y, j.transpose());
|
316
|
+
}
|
317
|
+
|
318
|
+
namespace internal {
|
319
|
+
|
320
|
+
template<typename Scalar, typename OtherScalar,
|
321
|
+
int SizeAtCompileTime, int MinAlignment, bool Vectorizable>
|
322
|
+
struct apply_rotation_in_the_plane_selector
|
323
|
+
{
|
324
|
+
static EIGEN_DEVICE_FUNC
|
325
|
+
inline void run(Scalar *x, Index incrx, Scalar *y, Index incry, Index size, OtherScalar c, OtherScalar s)
|
326
|
+
{
|
327
|
+
for(Index i=0; i<size; ++i)
|
328
|
+
{
|
329
|
+
Scalar xi = *x;
|
330
|
+
Scalar yi = *y;
|
331
|
+
*x = c * xi + numext::conj(s) * yi;
|
332
|
+
*y = -s * xi + numext::conj(c) * yi;
|
333
|
+
x += incrx;
|
334
|
+
y += incry;
|
335
|
+
}
|
336
|
+
}
|
337
|
+
};
|
338
|
+
|
339
|
+
template<typename Scalar, typename OtherScalar,
|
340
|
+
int SizeAtCompileTime, int MinAlignment>
|
341
|
+
struct apply_rotation_in_the_plane_selector<Scalar,OtherScalar,SizeAtCompileTime,MinAlignment,true /* vectorizable */>
|
342
|
+
{
|
343
|
+
static inline void run(Scalar *x, Index incrx, Scalar *y, Index incry, Index size, OtherScalar c, OtherScalar s)
|
344
|
+
{
|
345
|
+
enum {
|
346
|
+
PacketSize = packet_traits<Scalar>::size,
|
347
|
+
OtherPacketSize = packet_traits<OtherScalar>::size
|
348
|
+
};
|
349
|
+
typedef typename packet_traits<Scalar>::type Packet;
|
350
|
+
typedef typename packet_traits<OtherScalar>::type OtherPacket;
|
351
|
+
|
352
|
+
/*** dynamic-size vectorized paths ***/
|
353
|
+
if(SizeAtCompileTime == Dynamic && ((incrx==1 && incry==1) || PacketSize == 1))
|
354
|
+
{
|
355
|
+
// both vectors are sequentially stored in memory => vectorization
|
356
|
+
enum { Peeling = 2 };
|
357
|
+
|
358
|
+
Index alignedStart = internal::first_default_aligned(y, size);
|
359
|
+
Index alignedEnd = alignedStart + ((size-alignedStart)/PacketSize)*PacketSize;
|
360
|
+
|
361
|
+
const OtherPacket pc = pset1<OtherPacket>(c);
|
362
|
+
const OtherPacket ps = pset1<OtherPacket>(s);
|
363
|
+
conj_helper<OtherPacket,Packet,NumTraits<OtherScalar>::IsComplex,false> pcj;
|
364
|
+
conj_helper<OtherPacket,Packet,false,false> pm;
|
365
|
+
|
366
|
+
for(Index i=0; i<alignedStart; ++i)
|
367
|
+
{
|
368
|
+
Scalar xi = x[i];
|
369
|
+
Scalar yi = y[i];
|
370
|
+
x[i] = c * xi + numext::conj(s) * yi;
|
371
|
+
y[i] = -s * xi + numext::conj(c) * yi;
|
372
|
+
}
|
373
|
+
|
374
|
+
Scalar* EIGEN_RESTRICT px = x + alignedStart;
|
375
|
+
Scalar* EIGEN_RESTRICT py = y + alignedStart;
|
376
|
+
|
377
|
+
if(internal::first_default_aligned(x, size)==alignedStart)
|
378
|
+
{
|
379
|
+
for(Index i=alignedStart; i<alignedEnd; i+=PacketSize)
|
380
|
+
{
|
381
|
+
Packet xi = pload<Packet>(px);
|
382
|
+
Packet yi = pload<Packet>(py);
|
383
|
+
pstore(px, padd(pm.pmul(pc,xi),pcj.pmul(ps,yi)));
|
384
|
+
pstore(py, psub(pcj.pmul(pc,yi),pm.pmul(ps,xi)));
|
385
|
+
px += PacketSize;
|
386
|
+
py += PacketSize;
|
387
|
+
}
|
388
|
+
}
|
389
|
+
else
|
390
|
+
{
|
391
|
+
Index peelingEnd = alignedStart + ((size-alignedStart)/(Peeling*PacketSize))*(Peeling*PacketSize);
|
392
|
+
for(Index i=alignedStart; i<peelingEnd; i+=Peeling*PacketSize)
|
393
|
+
{
|
394
|
+
Packet xi = ploadu<Packet>(px);
|
395
|
+
Packet xi1 = ploadu<Packet>(px+PacketSize);
|
396
|
+
Packet yi = pload <Packet>(py);
|
397
|
+
Packet yi1 = pload <Packet>(py+PacketSize);
|
398
|
+
pstoreu(px, padd(pm.pmul(pc,xi),pcj.pmul(ps,yi)));
|
399
|
+
pstoreu(px+PacketSize, padd(pm.pmul(pc,xi1),pcj.pmul(ps,yi1)));
|
400
|
+
pstore (py, psub(pcj.pmul(pc,yi),pm.pmul(ps,xi)));
|
401
|
+
pstore (py+PacketSize, psub(pcj.pmul(pc,yi1),pm.pmul(ps,xi1)));
|
402
|
+
px += Peeling*PacketSize;
|
403
|
+
py += Peeling*PacketSize;
|
404
|
+
}
|
405
|
+
if(alignedEnd!=peelingEnd)
|
406
|
+
{
|
407
|
+
Packet xi = ploadu<Packet>(x+peelingEnd);
|
408
|
+
Packet yi = pload <Packet>(y+peelingEnd);
|
409
|
+
pstoreu(x+peelingEnd, padd(pm.pmul(pc,xi),pcj.pmul(ps,yi)));
|
410
|
+
pstore (y+peelingEnd, psub(pcj.pmul(pc,yi),pm.pmul(ps,xi)));
|
411
|
+
}
|
412
|
+
}
|
413
|
+
|
414
|
+
for(Index i=alignedEnd; i<size; ++i)
|
415
|
+
{
|
416
|
+
Scalar xi = x[i];
|
417
|
+
Scalar yi = y[i];
|
418
|
+
x[i] = c * xi + numext::conj(s) * yi;
|
419
|
+
y[i] = -s * xi + numext::conj(c) * yi;
|
420
|
+
}
|
421
|
+
}
|
422
|
+
|
423
|
+
/*** fixed-size vectorized path ***/
|
424
|
+
else if(SizeAtCompileTime != Dynamic && MinAlignment>0) // FIXME should be compared to the required alignment
|
425
|
+
{
|
426
|
+
const OtherPacket pc = pset1<OtherPacket>(c);
|
427
|
+
const OtherPacket ps = pset1<OtherPacket>(s);
|
428
|
+
conj_helper<OtherPacket,Packet,NumTraits<OtherPacket>::IsComplex,false> pcj;
|
429
|
+
conj_helper<OtherPacket,Packet,false,false> pm;
|
430
|
+
Scalar* EIGEN_RESTRICT px = x;
|
431
|
+
Scalar* EIGEN_RESTRICT py = y;
|
432
|
+
for(Index i=0; i<size; i+=PacketSize)
|
433
|
+
{
|
434
|
+
Packet xi = pload<Packet>(px);
|
435
|
+
Packet yi = pload<Packet>(py);
|
436
|
+
pstore(px, padd(pm.pmul(pc,xi),pcj.pmul(ps,yi)));
|
437
|
+
pstore(py, psub(pcj.pmul(pc,yi),pm.pmul(ps,xi)));
|
438
|
+
px += PacketSize;
|
439
|
+
py += PacketSize;
|
440
|
+
}
|
441
|
+
}
|
442
|
+
|
443
|
+
/*** non-vectorized path ***/
|
444
|
+
else
|
445
|
+
{
|
446
|
+
apply_rotation_in_the_plane_selector<Scalar,OtherScalar,SizeAtCompileTime,MinAlignment,false>::run(x,incrx,y,incry,size,c,s);
|
447
|
+
}
|
448
|
+
}
|
449
|
+
};
|
450
|
+
|
451
|
+
template<typename VectorX, typename VectorY, typename OtherScalar>
|
452
|
+
EIGEN_DEVICE_FUNC
|
453
|
+
void /*EIGEN_DONT_INLINE*/ apply_rotation_in_the_plane(DenseBase<VectorX>& xpr_x, DenseBase<VectorY>& xpr_y, const JacobiRotation<OtherScalar>& j)
|
454
|
+
{
|
455
|
+
typedef typename VectorX::Scalar Scalar;
|
456
|
+
const bool Vectorizable = (int(VectorX::Flags) & int(VectorY::Flags) & PacketAccessBit)
|
457
|
+
&& (int(packet_traits<Scalar>::size) == int(packet_traits<OtherScalar>::size));
|
458
|
+
|
459
|
+
eigen_assert(xpr_x.size() == xpr_y.size());
|
460
|
+
Index size = xpr_x.size();
|
461
|
+
Index incrx = xpr_x.derived().innerStride();
|
462
|
+
Index incry = xpr_y.derived().innerStride();
|
463
|
+
|
464
|
+
Scalar* EIGEN_RESTRICT x = &xpr_x.derived().coeffRef(0);
|
465
|
+
Scalar* EIGEN_RESTRICT y = &xpr_y.derived().coeffRef(0);
|
466
|
+
|
467
|
+
OtherScalar c = j.c();
|
468
|
+
OtherScalar s = j.s();
|
469
|
+
if (c==OtherScalar(1) && s==OtherScalar(0))
|
470
|
+
return;
|
471
|
+
|
472
|
+
apply_rotation_in_the_plane_selector<
|
473
|
+
Scalar,OtherScalar,
|
474
|
+
VectorX::SizeAtCompileTime,
|
475
|
+
EIGEN_PLAIN_ENUM_MIN(evaluator<VectorX>::Alignment, evaluator<VectorY>::Alignment),
|
476
|
+
Vectorizable>::run(x,incrx,y,incry,size,c,s);
|
477
|
+
}
|
478
|
+
|
479
|
+
} // end namespace internal
|
480
|
+
|
481
|
+
} // end namespace Eigen
|
482
|
+
|
483
|
+
#endif // EIGEN_JACOBI_H
|