umappp 0.1.2

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Files changed (395) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +25 -0
  3. data/README.md +110 -0
  4. data/ext/umappp/extconf.rb +25 -0
  5. data/ext/umappp/numo.hpp +867 -0
  6. data/ext/umappp/umappp.cpp +225 -0
  7. data/lib/umappp/version.rb +5 -0
  8. data/lib/umappp.rb +41 -0
  9. data/vendor/Eigen/Cholesky +45 -0
  10. data/vendor/Eigen/CholmodSupport +48 -0
  11. data/vendor/Eigen/Core +384 -0
  12. data/vendor/Eigen/Dense +7 -0
  13. data/vendor/Eigen/Eigen +2 -0
  14. data/vendor/Eigen/Eigenvalues +60 -0
  15. data/vendor/Eigen/Geometry +59 -0
  16. data/vendor/Eigen/Householder +29 -0
  17. data/vendor/Eigen/IterativeLinearSolvers +48 -0
  18. data/vendor/Eigen/Jacobi +32 -0
  19. data/vendor/Eigen/KLUSupport +41 -0
  20. data/vendor/Eigen/LU +47 -0
  21. data/vendor/Eigen/MetisSupport +35 -0
  22. data/vendor/Eigen/OrderingMethods +70 -0
  23. data/vendor/Eigen/PaStiXSupport +49 -0
  24. data/vendor/Eigen/PardisoSupport +35 -0
  25. data/vendor/Eigen/QR +50 -0
  26. data/vendor/Eigen/QtAlignedMalloc +39 -0
  27. data/vendor/Eigen/SPQRSupport +34 -0
  28. data/vendor/Eigen/SVD +50 -0
  29. data/vendor/Eigen/Sparse +34 -0
  30. data/vendor/Eigen/SparseCholesky +37 -0
  31. data/vendor/Eigen/SparseCore +69 -0
  32. data/vendor/Eigen/SparseLU +50 -0
  33. data/vendor/Eigen/SparseQR +36 -0
  34. data/vendor/Eigen/StdDeque +27 -0
  35. data/vendor/Eigen/StdList +26 -0
  36. data/vendor/Eigen/StdVector +27 -0
  37. data/vendor/Eigen/SuperLUSupport +64 -0
  38. data/vendor/Eigen/UmfPackSupport +40 -0
  39. data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
  40. data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
  41. data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  42. data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
  43. data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
  44. data/vendor/Eigen/src/Core/Array.h +417 -0
  45. data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
  46. data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
  47. data/vendor/Eigen/src/Core/Assign.h +90 -0
  48. data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
  49. data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
  50. data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
  51. data/vendor/Eigen/src/Core/Block.h +448 -0
  52. data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
  53. data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
  54. data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
  55. data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
  56. data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
  57. data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
  58. data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
  59. data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  60. data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  61. data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
  62. data/vendor/Eigen/src/Core/DenseBase.h +701 -0
  63. data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
  64. data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
  65. data/vendor/Eigen/src/Core/Diagonal.h +258 -0
  66. data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
  67. data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
  68. data/vendor/Eigen/src/Core/Dot.h +318 -0
  69. data/vendor/Eigen/src/Core/EigenBase.h +160 -0
  70. data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
  71. data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
  72. data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
  73. data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
  74. data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
  75. data/vendor/Eigen/src/Core/IO.h +258 -0
  76. data/vendor/Eigen/src/Core/IndexedView.h +237 -0
  77. data/vendor/Eigen/src/Core/Inverse.h +117 -0
  78. data/vendor/Eigen/src/Core/Map.h +171 -0
  79. data/vendor/Eigen/src/Core/MapBase.h +310 -0
  80. data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
  81. data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
  82. data/vendor/Eigen/src/Core/Matrix.h +565 -0
  83. data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
  84. data/vendor/Eigen/src/Core/NestByValue.h +85 -0
  85. data/vendor/Eigen/src/Core/NoAlias.h +109 -0
  86. data/vendor/Eigen/src/Core/NumTraits.h +335 -0
  87. data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  88. data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
  89. data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
  90. data/vendor/Eigen/src/Core/Product.h +191 -0
  91. data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
  92. data/vendor/Eigen/src/Core/Random.h +218 -0
  93. data/vendor/Eigen/src/Core/Redux.h +515 -0
  94. data/vendor/Eigen/src/Core/Ref.h +381 -0
  95. data/vendor/Eigen/src/Core/Replicate.h +142 -0
  96. data/vendor/Eigen/src/Core/Reshaped.h +454 -0
  97. data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
  98. data/vendor/Eigen/src/Core/Reverse.h +217 -0
  99. data/vendor/Eigen/src/Core/Select.h +164 -0
  100. data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
  101. data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  102. data/vendor/Eigen/src/Core/Solve.h +188 -0
  103. data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
  104. data/vendor/Eigen/src/Core/SolverBase.h +168 -0
  105. data/vendor/Eigen/src/Core/StableNorm.h +251 -0
  106. data/vendor/Eigen/src/Core/StlIterators.h +463 -0
  107. data/vendor/Eigen/src/Core/Stride.h +116 -0
  108. data/vendor/Eigen/src/Core/Swap.h +68 -0
  109. data/vendor/Eigen/src/Core/Transpose.h +464 -0
  110. data/vendor/Eigen/src/Core/Transpositions.h +386 -0
  111. data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
  112. data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
  113. data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
  114. data/vendor/Eigen/src/Core/Visitor.h +381 -0
  115. data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
  116. data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
  117. data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
  118. data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
  119. data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  120. data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
  121. data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
  122. data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  123. data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
  124. data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
  125. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  126. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  127. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  128. data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
  129. data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
  130. data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  131. data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
  132. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  133. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  134. data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
  135. data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
  136. data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  137. data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
  138. data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  139. data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  140. data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  141. data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  142. data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  143. data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  144. data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
  145. data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  146. data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
  147. data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
  148. data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  149. data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
  150. data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
  151. data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
  152. data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
  153. data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  154. data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  155. data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  156. data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  157. data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  158. data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  159. data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  160. data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  161. data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
  162. data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
  163. data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
  164. data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
  165. data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
  166. data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
  167. data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
  168. data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  169. data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
  170. data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
  171. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
  172. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
  173. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  174. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
  175. data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
  176. data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  177. data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
  178. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
  179. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
  180. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
  181. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  182. data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  183. data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
  184. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
  185. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
  186. data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  187. data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  188. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
  189. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
  190. data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
  191. data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
  192. data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  193. data/vendor/Eigen/src/Core/util/Constants.h +563 -0
  194. data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
  195. data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
  196. data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  197. data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
  198. data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
  199. data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
  200. data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
  201. data/vendor/Eigen/src/Core/util/Meta.h +812 -0
  202. data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
  203. data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
  204. data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  205. data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
  206. data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  207. data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
  208. data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  209. data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
  210. data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  211. data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  212. data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  213. data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  214. data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  215. data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  216. data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
  217. data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
  218. data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  219. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
  220. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  221. data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
  222. data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
  223. data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
  224. data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
  225. data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
  226. data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
  227. data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
  228. data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
  229. data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
  230. data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
  231. data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
  232. data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
  233. data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
  234. data/vendor/Eigen/src/Geometry/Translation.h +202 -0
  235. data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
  236. data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  237. data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
  238. data/vendor/Eigen/src/Householder/Householder.h +176 -0
  239. data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
  240. data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  241. data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
  242. data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
  243. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
  244. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
  245. data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
  246. data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
  247. data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
  248. data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
  249. data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  250. data/vendor/Eigen/src/LU/Determinant.h +117 -0
  251. data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
  252. data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
  253. data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
  254. data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  255. data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
  256. data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  257. data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
  258. data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
  259. data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
  260. data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  261. data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
  262. data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
  263. data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  264. data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
  265. data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
  266. data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
  267. data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  268. data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
  269. data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
  270. data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
  271. data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  272. data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
  273. data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  274. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
  275. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
  276. data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
  277. data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
  278. data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  279. data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  280. data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
  281. data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
  282. data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  283. data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
  284. data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
  285. data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
  286. data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
  287. data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  288. data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
  289. data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  290. data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
  291. data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
  292. data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
  293. data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  294. data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
  295. data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
  296. data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
  297. data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
  298. data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  299. data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  300. data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  301. data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  302. data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
  303. data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
  304. data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
  305. data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  306. data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
  307. data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  308. data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  309. data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  310. data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
  311. data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  312. data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  313. data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  314. data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  315. data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  316. data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  317. data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  318. data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  319. data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  320. data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  321. data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  322. data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  323. data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
  324. data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
  325. data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
  326. data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
  327. data/vendor/Eigen/src/StlSupport/details.h +84 -0
  328. data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
  329. data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
  330. data/vendor/Eigen/src/misc/Image.h +82 -0
  331. data/vendor/Eigen/src/misc/Kernel.h +79 -0
  332. data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
  333. data/vendor/Eigen/src/misc/blas.h +440 -0
  334. data/vendor/Eigen/src/misc/lapack.h +152 -0
  335. data/vendor/Eigen/src/misc/lapacke.h +16292 -0
  336. data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
  337. data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
  338. data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
  339. data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
  340. data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  341. data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
  342. data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  343. data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  344. data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
  345. data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
  346. data/vendor/aarand/aarand.hpp +114 -0
  347. data/vendor/annoy/annoylib.h +1495 -0
  348. data/vendor/annoy/kissrandom.h +120 -0
  349. data/vendor/annoy/mman.h +242 -0
  350. data/vendor/hnswlib/bruteforce.h +152 -0
  351. data/vendor/hnswlib/hnswalg.h +1192 -0
  352. data/vendor/hnswlib/hnswlib.h +108 -0
  353. data/vendor/hnswlib/space_ip.h +282 -0
  354. data/vendor/hnswlib/space_l2.h +281 -0
  355. data/vendor/hnswlib/visited_list_pool.h +79 -0
  356. data/vendor/irlba/irlba.hpp +575 -0
  357. data/vendor/irlba/lanczos.hpp +212 -0
  358. data/vendor/irlba/parallel.hpp +474 -0
  359. data/vendor/irlba/utils.hpp +224 -0
  360. data/vendor/irlba/wrappers.hpp +228 -0
  361. data/vendor/kmeans/Base.hpp +75 -0
  362. data/vendor/kmeans/Details.hpp +79 -0
  363. data/vendor/kmeans/HartiganWong.hpp +492 -0
  364. data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
  365. data/vendor/kmeans/InitializeNone.hpp +44 -0
  366. data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
  367. data/vendor/kmeans/InitializeRandom.hpp +91 -0
  368. data/vendor/kmeans/Kmeans.hpp +161 -0
  369. data/vendor/kmeans/Lloyd.hpp +134 -0
  370. data/vendor/kmeans/MiniBatch.hpp +269 -0
  371. data/vendor/kmeans/QuickSearch.hpp +179 -0
  372. data/vendor/kmeans/compute_centroids.hpp +32 -0
  373. data/vendor/kmeans/compute_wcss.hpp +27 -0
  374. data/vendor/kmeans/is_edge_case.hpp +42 -0
  375. data/vendor/kmeans/random.hpp +55 -0
  376. data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
  377. data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
  378. data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
  379. data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
  380. data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
  381. data/vendor/knncolle/knncolle.hpp +34 -0
  382. data/vendor/knncolle/utils/Base.hpp +100 -0
  383. data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
  384. data/vendor/knncolle/utils/distances.hpp +98 -0
  385. data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
  386. data/vendor/powerit/PowerIterations.hpp +157 -0
  387. data/vendor/umappp/NeighborList.hpp +37 -0
  388. data/vendor/umappp/Umap.hpp +662 -0
  389. data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
  390. data/vendor/umappp/find_ab.hpp +157 -0
  391. data/vendor/umappp/neighbor_similarities.hpp +136 -0
  392. data/vendor/umappp/optimize_layout.hpp +285 -0
  393. data/vendor/umappp/spectral_init.hpp +181 -0
  394. data/vendor/umappp/umappp.hpp +13 -0
  395. metadata +465 -0
@@ -0,0 +1,117 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2014 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_SOLVEWITHGUESS_H
11
+ #define EIGEN_SOLVEWITHGUESS_H
12
+
13
+ namespace Eigen {
14
+
15
+ template<typename Decomposition, typename RhsType, typename GuessType> class SolveWithGuess;
16
+
17
+ /** \class SolveWithGuess
18
+ * \ingroup IterativeLinearSolvers_Module
19
+ *
20
+ * \brief Pseudo expression representing a solving operation
21
+ *
22
+ * \tparam Decomposition the type of the matrix or decomposion object
23
+ * \tparam Rhstype the type of the right-hand side
24
+ *
25
+ * This class represents an expression of A.solve(B)
26
+ * and most of the time this is the only way it is used.
27
+ *
28
+ */
29
+ namespace internal {
30
+
31
+
32
+ template<typename Decomposition, typename RhsType, typename GuessType>
33
+ struct traits<SolveWithGuess<Decomposition, RhsType, GuessType> >
34
+ : traits<Solve<Decomposition,RhsType> >
35
+ {};
36
+
37
+ }
38
+
39
+
40
+ template<typename Decomposition, typename RhsType, typename GuessType>
41
+ class SolveWithGuess : public internal::generic_xpr_base<SolveWithGuess<Decomposition,RhsType,GuessType>, MatrixXpr, typename internal::traits<RhsType>::StorageKind>::type
42
+ {
43
+ public:
44
+ typedef typename internal::traits<SolveWithGuess>::Scalar Scalar;
45
+ typedef typename internal::traits<SolveWithGuess>::PlainObject PlainObject;
46
+ typedef typename internal::generic_xpr_base<SolveWithGuess<Decomposition,RhsType,GuessType>, MatrixXpr, typename internal::traits<RhsType>::StorageKind>::type Base;
47
+ typedef typename internal::ref_selector<SolveWithGuess>::type Nested;
48
+
49
+ SolveWithGuess(const Decomposition &dec, const RhsType &rhs, const GuessType &guess)
50
+ : m_dec(dec), m_rhs(rhs), m_guess(guess)
51
+ {}
52
+
53
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
54
+ Index rows() const EIGEN_NOEXCEPT { return m_dec.cols(); }
55
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
56
+ Index cols() const EIGEN_NOEXCEPT { return m_rhs.cols(); }
57
+
58
+ EIGEN_DEVICE_FUNC const Decomposition& dec() const { return m_dec; }
59
+ EIGEN_DEVICE_FUNC const RhsType& rhs() const { return m_rhs; }
60
+ EIGEN_DEVICE_FUNC const GuessType& guess() const { return m_guess; }
61
+
62
+ protected:
63
+ const Decomposition &m_dec;
64
+ const RhsType &m_rhs;
65
+ const GuessType &m_guess;
66
+
67
+ private:
68
+ Scalar coeff(Index row, Index col) const;
69
+ Scalar coeff(Index i) const;
70
+ };
71
+
72
+ namespace internal {
73
+
74
+ // Evaluator of SolveWithGuess -> eval into a temporary
75
+ template<typename Decomposition, typename RhsType, typename GuessType>
76
+ struct evaluator<SolveWithGuess<Decomposition,RhsType, GuessType> >
77
+ : public evaluator<typename SolveWithGuess<Decomposition,RhsType,GuessType>::PlainObject>
78
+ {
79
+ typedef SolveWithGuess<Decomposition,RhsType,GuessType> SolveType;
80
+ typedef typename SolveType::PlainObject PlainObject;
81
+ typedef evaluator<PlainObject> Base;
82
+
83
+ evaluator(const SolveType& solve)
84
+ : m_result(solve.rows(), solve.cols())
85
+ {
86
+ ::new (static_cast<Base*>(this)) Base(m_result);
87
+ m_result = solve.guess();
88
+ solve.dec()._solve_with_guess_impl(solve.rhs(), m_result);
89
+ }
90
+
91
+ protected:
92
+ PlainObject m_result;
93
+ };
94
+
95
+ // Specialization for "dst = dec.solveWithGuess(rhs)"
96
+ // NOTE we need to specialize it for Dense2Dense to avoid ambiguous specialization error and a Sparse2Sparse specialization must exist somewhere
97
+ template<typename DstXprType, typename DecType, typename RhsType, typename GuessType, typename Scalar>
98
+ struct Assignment<DstXprType, SolveWithGuess<DecType,RhsType,GuessType>, internal::assign_op<Scalar,Scalar>, Dense2Dense>
99
+ {
100
+ typedef SolveWithGuess<DecType,RhsType,GuessType> SrcXprType;
101
+ static void run(DstXprType &dst, const SrcXprType &src, const internal::assign_op<Scalar,Scalar> &)
102
+ {
103
+ Index dstRows = src.rows();
104
+ Index dstCols = src.cols();
105
+ if((dst.rows()!=dstRows) || (dst.cols()!=dstCols))
106
+ dst.resize(dstRows, dstCols);
107
+
108
+ dst = src.guess();
109
+ src.dec()._solve_with_guess_impl(src.rhs(), dst/*, src.guess()*/);
110
+ }
111
+ };
112
+
113
+ } // end namespace internal
114
+
115
+ } // end namespace Eigen
116
+
117
+ #endif // EIGEN_SOLVEWITHGUESS_H
@@ -0,0 +1,483 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2009 Benoit Jacob <jacob.benoit.1@gmail.com>
5
+ // Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_JACOBI_H
12
+ #define EIGEN_JACOBI_H
13
+
14
+ namespace Eigen {
15
+
16
+ /** \ingroup Jacobi_Module
17
+ * \jacobi_module
18
+ * \class JacobiRotation
19
+ * \brief Rotation given by a cosine-sine pair.
20
+ *
21
+ * This class represents a Jacobi or Givens rotation.
22
+ * This is a 2D rotation in the plane \c J of angle \f$ \theta \f$ defined by
23
+ * its cosine \c c and sine \c s as follow:
24
+ * \f$ J = \left ( \begin{array}{cc} c & \overline s \\ -s & \overline c \end{array} \right ) \f$
25
+ *
26
+ * You can apply the respective counter-clockwise rotation to a column vector \c v by
27
+ * applying its adjoint on the left: \f$ v = J^* v \f$ that translates to the following Eigen code:
28
+ * \code
29
+ * v.applyOnTheLeft(J.adjoint());
30
+ * \endcode
31
+ *
32
+ * \sa MatrixBase::applyOnTheLeft(), MatrixBase::applyOnTheRight()
33
+ */
34
+ template<typename Scalar> class JacobiRotation
35
+ {
36
+ public:
37
+ typedef typename NumTraits<Scalar>::Real RealScalar;
38
+
39
+ /** Default constructor without any initialization. */
40
+ EIGEN_DEVICE_FUNC
41
+ JacobiRotation() {}
42
+
43
+ /** Construct a planar rotation from a cosine-sine pair (\a c, \c s). */
44
+ EIGEN_DEVICE_FUNC
45
+ JacobiRotation(const Scalar& c, const Scalar& s) : m_c(c), m_s(s) {}
46
+
47
+ EIGEN_DEVICE_FUNC Scalar& c() { return m_c; }
48
+ EIGEN_DEVICE_FUNC Scalar c() const { return m_c; }
49
+ EIGEN_DEVICE_FUNC Scalar& s() { return m_s; }
50
+ EIGEN_DEVICE_FUNC Scalar s() const { return m_s; }
51
+
52
+ /** Concatenates two planar rotation */
53
+ EIGEN_DEVICE_FUNC
54
+ JacobiRotation operator*(const JacobiRotation& other)
55
+ {
56
+ using numext::conj;
57
+ return JacobiRotation(m_c * other.m_c - conj(m_s) * other.m_s,
58
+ conj(m_c * conj(other.m_s) + conj(m_s) * conj(other.m_c)));
59
+ }
60
+
61
+ /** Returns the transposed transformation */
62
+ EIGEN_DEVICE_FUNC
63
+ JacobiRotation transpose() const { using numext::conj; return JacobiRotation(m_c, -conj(m_s)); }
64
+
65
+ /** Returns the adjoint transformation */
66
+ EIGEN_DEVICE_FUNC
67
+ JacobiRotation adjoint() const { using numext::conj; return JacobiRotation(conj(m_c), -m_s); }
68
+
69
+ template<typename Derived>
70
+ EIGEN_DEVICE_FUNC
71
+ bool makeJacobi(const MatrixBase<Derived>&, Index p, Index q);
72
+ EIGEN_DEVICE_FUNC
73
+ bool makeJacobi(const RealScalar& x, const Scalar& y, const RealScalar& z);
74
+
75
+ EIGEN_DEVICE_FUNC
76
+ void makeGivens(const Scalar& p, const Scalar& q, Scalar* r=0);
77
+
78
+ protected:
79
+ EIGEN_DEVICE_FUNC
80
+ void makeGivens(const Scalar& p, const Scalar& q, Scalar* r, internal::true_type);
81
+ EIGEN_DEVICE_FUNC
82
+ void makeGivens(const Scalar& p, const Scalar& q, Scalar* r, internal::false_type);
83
+
84
+ Scalar m_c, m_s;
85
+ };
86
+
87
+ /** Makes \c *this as a Jacobi rotation \a J such that applying \a J on both the right and left sides of the selfadjoint 2x2 matrix
88
+ * \f$ B = \left ( \begin{array}{cc} x & y \\ \overline y & z \end{array} \right )\f$ yields a diagonal matrix \f$ A = J^* B J \f$
89
+ *
90
+ * \sa MatrixBase::makeJacobi(const MatrixBase<Derived>&, Index, Index), MatrixBase::applyOnTheLeft(), MatrixBase::applyOnTheRight()
91
+ */
92
+ template<typename Scalar>
93
+ EIGEN_DEVICE_FUNC
94
+ bool JacobiRotation<Scalar>::makeJacobi(const RealScalar& x, const Scalar& y, const RealScalar& z)
95
+ {
96
+ using std::sqrt;
97
+ using std::abs;
98
+
99
+ RealScalar deno = RealScalar(2)*abs(y);
100
+ if(deno < (std::numeric_limits<RealScalar>::min)())
101
+ {
102
+ m_c = Scalar(1);
103
+ m_s = Scalar(0);
104
+ return false;
105
+ }
106
+ else
107
+ {
108
+ RealScalar tau = (x-z)/deno;
109
+ RealScalar w = sqrt(numext::abs2(tau) + RealScalar(1));
110
+ RealScalar t;
111
+ if(tau>RealScalar(0))
112
+ {
113
+ t = RealScalar(1) / (tau + w);
114
+ }
115
+ else
116
+ {
117
+ t = RealScalar(1) / (tau - w);
118
+ }
119
+ RealScalar sign_t = t > RealScalar(0) ? RealScalar(1) : RealScalar(-1);
120
+ RealScalar n = RealScalar(1) / sqrt(numext::abs2(t)+RealScalar(1));
121
+ m_s = - sign_t * (numext::conj(y) / abs(y)) * abs(t) * n;
122
+ m_c = n;
123
+ return true;
124
+ }
125
+ }
126
+
127
+ /** Makes \c *this as a Jacobi rotation \c J such that applying \a J on both the right and left sides of the 2x2 selfadjoint matrix
128
+ * \f$ B = \left ( \begin{array}{cc} \text{this}_{pp} & \text{this}_{pq} \\ (\text{this}_{pq})^* & \text{this}_{qq} \end{array} \right )\f$ yields
129
+ * a diagonal matrix \f$ A = J^* B J \f$
130
+ *
131
+ * Example: \include Jacobi_makeJacobi.cpp
132
+ * Output: \verbinclude Jacobi_makeJacobi.out
133
+ *
134
+ * \sa JacobiRotation::makeJacobi(RealScalar, Scalar, RealScalar), MatrixBase::applyOnTheLeft(), MatrixBase::applyOnTheRight()
135
+ */
136
+ template<typename Scalar>
137
+ template<typename Derived>
138
+ EIGEN_DEVICE_FUNC
139
+ inline bool JacobiRotation<Scalar>::makeJacobi(const MatrixBase<Derived>& m, Index p, Index q)
140
+ {
141
+ return makeJacobi(numext::real(m.coeff(p,p)), m.coeff(p,q), numext::real(m.coeff(q,q)));
142
+ }
143
+
144
+ /** Makes \c *this as a Givens rotation \c G such that applying \f$ G^* \f$ to the left of the vector
145
+ * \f$ V = \left ( \begin{array}{c} p \\ q \end{array} \right )\f$ yields:
146
+ * \f$ G^* V = \left ( \begin{array}{c} r \\ 0 \end{array} \right )\f$.
147
+ *
148
+ * The value of \a r is returned if \a r is not null (the default is null).
149
+ * Also note that G is built such that the cosine is always real.
150
+ *
151
+ * Example: \include Jacobi_makeGivens.cpp
152
+ * Output: \verbinclude Jacobi_makeGivens.out
153
+ *
154
+ * This function implements the continuous Givens rotation generation algorithm
155
+ * found in Anderson (2000), Discontinuous Plane Rotations and the Symmetric Eigenvalue Problem.
156
+ * LAPACK Working Note 150, University of Tennessee, UT-CS-00-454, December 4, 2000.
157
+ *
158
+ * \sa MatrixBase::applyOnTheLeft(), MatrixBase::applyOnTheRight()
159
+ */
160
+ template<typename Scalar>
161
+ EIGEN_DEVICE_FUNC
162
+ void JacobiRotation<Scalar>::makeGivens(const Scalar& p, const Scalar& q, Scalar* r)
163
+ {
164
+ makeGivens(p, q, r, typename internal::conditional<NumTraits<Scalar>::IsComplex, internal::true_type, internal::false_type>::type());
165
+ }
166
+
167
+
168
+ // specialization for complexes
169
+ template<typename Scalar>
170
+ EIGEN_DEVICE_FUNC
171
+ void JacobiRotation<Scalar>::makeGivens(const Scalar& p, const Scalar& q, Scalar* r, internal::true_type)
172
+ {
173
+ using std::sqrt;
174
+ using std::abs;
175
+ using numext::conj;
176
+
177
+ if(q==Scalar(0))
178
+ {
179
+ m_c = numext::real(p)<0 ? Scalar(-1) : Scalar(1);
180
+ m_s = 0;
181
+ if(r) *r = m_c * p;
182
+ }
183
+ else if(p==Scalar(0))
184
+ {
185
+ m_c = 0;
186
+ m_s = -q/abs(q);
187
+ if(r) *r = abs(q);
188
+ }
189
+ else
190
+ {
191
+ RealScalar p1 = numext::norm1(p);
192
+ RealScalar q1 = numext::norm1(q);
193
+ if(p1>=q1)
194
+ {
195
+ Scalar ps = p / p1;
196
+ RealScalar p2 = numext::abs2(ps);
197
+ Scalar qs = q / p1;
198
+ RealScalar q2 = numext::abs2(qs);
199
+
200
+ RealScalar u = sqrt(RealScalar(1) + q2/p2);
201
+ if(numext::real(p)<RealScalar(0))
202
+ u = -u;
203
+
204
+ m_c = Scalar(1)/u;
205
+ m_s = -qs*conj(ps)*(m_c/p2);
206
+ if(r) *r = p * u;
207
+ }
208
+ else
209
+ {
210
+ Scalar ps = p / q1;
211
+ RealScalar p2 = numext::abs2(ps);
212
+ Scalar qs = q / q1;
213
+ RealScalar q2 = numext::abs2(qs);
214
+
215
+ RealScalar u = q1 * sqrt(p2 + q2);
216
+ if(numext::real(p)<RealScalar(0))
217
+ u = -u;
218
+
219
+ p1 = abs(p);
220
+ ps = p/p1;
221
+ m_c = p1/u;
222
+ m_s = -conj(ps) * (q/u);
223
+ if(r) *r = ps * u;
224
+ }
225
+ }
226
+ }
227
+
228
+ // specialization for reals
229
+ template<typename Scalar>
230
+ EIGEN_DEVICE_FUNC
231
+ void JacobiRotation<Scalar>::makeGivens(const Scalar& p, const Scalar& q, Scalar* r, internal::false_type)
232
+ {
233
+ using std::sqrt;
234
+ using std::abs;
235
+ if(q==Scalar(0))
236
+ {
237
+ m_c = p<Scalar(0) ? Scalar(-1) : Scalar(1);
238
+ m_s = Scalar(0);
239
+ if(r) *r = abs(p);
240
+ }
241
+ else if(p==Scalar(0))
242
+ {
243
+ m_c = Scalar(0);
244
+ m_s = q<Scalar(0) ? Scalar(1) : Scalar(-1);
245
+ if(r) *r = abs(q);
246
+ }
247
+ else if(abs(p) > abs(q))
248
+ {
249
+ Scalar t = q/p;
250
+ Scalar u = sqrt(Scalar(1) + numext::abs2(t));
251
+ if(p<Scalar(0))
252
+ u = -u;
253
+ m_c = Scalar(1)/u;
254
+ m_s = -t * m_c;
255
+ if(r) *r = p * u;
256
+ }
257
+ else
258
+ {
259
+ Scalar t = p/q;
260
+ Scalar u = sqrt(Scalar(1) + numext::abs2(t));
261
+ if(q<Scalar(0))
262
+ u = -u;
263
+ m_s = -Scalar(1)/u;
264
+ m_c = -t * m_s;
265
+ if(r) *r = q * u;
266
+ }
267
+
268
+ }
269
+
270
+ /****************************************************************************************
271
+ * Implementation of MatrixBase methods
272
+ ****************************************************************************************/
273
+
274
+ namespace internal {
275
+ /** \jacobi_module
276
+ * Applies the clock wise 2D rotation \a j to the set of 2D vectors of coordinates \a x and \a y:
277
+ * \f$ \left ( \begin{array}{cc} x \\ y \end{array} \right ) = J \left ( \begin{array}{cc} x \\ y \end{array} \right ) \f$
278
+ *
279
+ * \sa MatrixBase::applyOnTheLeft(), MatrixBase::applyOnTheRight()
280
+ */
281
+ template<typename VectorX, typename VectorY, typename OtherScalar>
282
+ EIGEN_DEVICE_FUNC
283
+ void apply_rotation_in_the_plane(DenseBase<VectorX>& xpr_x, DenseBase<VectorY>& xpr_y, const JacobiRotation<OtherScalar>& j);
284
+ }
285
+
286
+ /** \jacobi_module
287
+ * Applies the rotation in the plane \a j to the rows \a p and \a q of \c *this, i.e., it computes B = J * B,
288
+ * with \f$ B = \left ( \begin{array}{cc} \text{*this.row}(p) \\ \text{*this.row}(q) \end{array} \right ) \f$.
289
+ *
290
+ * \sa class JacobiRotation, MatrixBase::applyOnTheRight(), internal::apply_rotation_in_the_plane()
291
+ */
292
+ template<typename Derived>
293
+ template<typename OtherScalar>
294
+ EIGEN_DEVICE_FUNC
295
+ inline void MatrixBase<Derived>::applyOnTheLeft(Index p, Index q, const JacobiRotation<OtherScalar>& j)
296
+ {
297
+ RowXpr x(this->row(p));
298
+ RowXpr y(this->row(q));
299
+ internal::apply_rotation_in_the_plane(x, y, j);
300
+ }
301
+
302
+ /** \ingroup Jacobi_Module
303
+ * Applies the rotation in the plane \a j to the columns \a p and \a q of \c *this, i.e., it computes B = B * J
304
+ * with \f$ B = \left ( \begin{array}{cc} \text{*this.col}(p) & \text{*this.col}(q) \end{array} \right ) \f$.
305
+ *
306
+ * \sa class JacobiRotation, MatrixBase::applyOnTheLeft(), internal::apply_rotation_in_the_plane()
307
+ */
308
+ template<typename Derived>
309
+ template<typename OtherScalar>
310
+ EIGEN_DEVICE_FUNC
311
+ inline void MatrixBase<Derived>::applyOnTheRight(Index p, Index q, const JacobiRotation<OtherScalar>& j)
312
+ {
313
+ ColXpr x(this->col(p));
314
+ ColXpr y(this->col(q));
315
+ internal::apply_rotation_in_the_plane(x, y, j.transpose());
316
+ }
317
+
318
+ namespace internal {
319
+
320
+ template<typename Scalar, typename OtherScalar,
321
+ int SizeAtCompileTime, int MinAlignment, bool Vectorizable>
322
+ struct apply_rotation_in_the_plane_selector
323
+ {
324
+ static EIGEN_DEVICE_FUNC
325
+ inline void run(Scalar *x, Index incrx, Scalar *y, Index incry, Index size, OtherScalar c, OtherScalar s)
326
+ {
327
+ for(Index i=0; i<size; ++i)
328
+ {
329
+ Scalar xi = *x;
330
+ Scalar yi = *y;
331
+ *x = c * xi + numext::conj(s) * yi;
332
+ *y = -s * xi + numext::conj(c) * yi;
333
+ x += incrx;
334
+ y += incry;
335
+ }
336
+ }
337
+ };
338
+
339
+ template<typename Scalar, typename OtherScalar,
340
+ int SizeAtCompileTime, int MinAlignment>
341
+ struct apply_rotation_in_the_plane_selector<Scalar,OtherScalar,SizeAtCompileTime,MinAlignment,true /* vectorizable */>
342
+ {
343
+ static inline void run(Scalar *x, Index incrx, Scalar *y, Index incry, Index size, OtherScalar c, OtherScalar s)
344
+ {
345
+ enum {
346
+ PacketSize = packet_traits<Scalar>::size,
347
+ OtherPacketSize = packet_traits<OtherScalar>::size
348
+ };
349
+ typedef typename packet_traits<Scalar>::type Packet;
350
+ typedef typename packet_traits<OtherScalar>::type OtherPacket;
351
+
352
+ /*** dynamic-size vectorized paths ***/
353
+ if(SizeAtCompileTime == Dynamic && ((incrx==1 && incry==1) || PacketSize == 1))
354
+ {
355
+ // both vectors are sequentially stored in memory => vectorization
356
+ enum { Peeling = 2 };
357
+
358
+ Index alignedStart = internal::first_default_aligned(y, size);
359
+ Index alignedEnd = alignedStart + ((size-alignedStart)/PacketSize)*PacketSize;
360
+
361
+ const OtherPacket pc = pset1<OtherPacket>(c);
362
+ const OtherPacket ps = pset1<OtherPacket>(s);
363
+ conj_helper<OtherPacket,Packet,NumTraits<OtherScalar>::IsComplex,false> pcj;
364
+ conj_helper<OtherPacket,Packet,false,false> pm;
365
+
366
+ for(Index i=0; i<alignedStart; ++i)
367
+ {
368
+ Scalar xi = x[i];
369
+ Scalar yi = y[i];
370
+ x[i] = c * xi + numext::conj(s) * yi;
371
+ y[i] = -s * xi + numext::conj(c) * yi;
372
+ }
373
+
374
+ Scalar* EIGEN_RESTRICT px = x + alignedStart;
375
+ Scalar* EIGEN_RESTRICT py = y + alignedStart;
376
+
377
+ if(internal::first_default_aligned(x, size)==alignedStart)
378
+ {
379
+ for(Index i=alignedStart; i<alignedEnd; i+=PacketSize)
380
+ {
381
+ Packet xi = pload<Packet>(px);
382
+ Packet yi = pload<Packet>(py);
383
+ pstore(px, padd(pm.pmul(pc,xi),pcj.pmul(ps,yi)));
384
+ pstore(py, psub(pcj.pmul(pc,yi),pm.pmul(ps,xi)));
385
+ px += PacketSize;
386
+ py += PacketSize;
387
+ }
388
+ }
389
+ else
390
+ {
391
+ Index peelingEnd = alignedStart + ((size-alignedStart)/(Peeling*PacketSize))*(Peeling*PacketSize);
392
+ for(Index i=alignedStart; i<peelingEnd; i+=Peeling*PacketSize)
393
+ {
394
+ Packet xi = ploadu<Packet>(px);
395
+ Packet xi1 = ploadu<Packet>(px+PacketSize);
396
+ Packet yi = pload <Packet>(py);
397
+ Packet yi1 = pload <Packet>(py+PacketSize);
398
+ pstoreu(px, padd(pm.pmul(pc,xi),pcj.pmul(ps,yi)));
399
+ pstoreu(px+PacketSize, padd(pm.pmul(pc,xi1),pcj.pmul(ps,yi1)));
400
+ pstore (py, psub(pcj.pmul(pc,yi),pm.pmul(ps,xi)));
401
+ pstore (py+PacketSize, psub(pcj.pmul(pc,yi1),pm.pmul(ps,xi1)));
402
+ px += Peeling*PacketSize;
403
+ py += Peeling*PacketSize;
404
+ }
405
+ if(alignedEnd!=peelingEnd)
406
+ {
407
+ Packet xi = ploadu<Packet>(x+peelingEnd);
408
+ Packet yi = pload <Packet>(y+peelingEnd);
409
+ pstoreu(x+peelingEnd, padd(pm.pmul(pc,xi),pcj.pmul(ps,yi)));
410
+ pstore (y+peelingEnd, psub(pcj.pmul(pc,yi),pm.pmul(ps,xi)));
411
+ }
412
+ }
413
+
414
+ for(Index i=alignedEnd; i<size; ++i)
415
+ {
416
+ Scalar xi = x[i];
417
+ Scalar yi = y[i];
418
+ x[i] = c * xi + numext::conj(s) * yi;
419
+ y[i] = -s * xi + numext::conj(c) * yi;
420
+ }
421
+ }
422
+
423
+ /*** fixed-size vectorized path ***/
424
+ else if(SizeAtCompileTime != Dynamic && MinAlignment>0) // FIXME should be compared to the required alignment
425
+ {
426
+ const OtherPacket pc = pset1<OtherPacket>(c);
427
+ const OtherPacket ps = pset1<OtherPacket>(s);
428
+ conj_helper<OtherPacket,Packet,NumTraits<OtherPacket>::IsComplex,false> pcj;
429
+ conj_helper<OtherPacket,Packet,false,false> pm;
430
+ Scalar* EIGEN_RESTRICT px = x;
431
+ Scalar* EIGEN_RESTRICT py = y;
432
+ for(Index i=0; i<size; i+=PacketSize)
433
+ {
434
+ Packet xi = pload<Packet>(px);
435
+ Packet yi = pload<Packet>(py);
436
+ pstore(px, padd(pm.pmul(pc,xi),pcj.pmul(ps,yi)));
437
+ pstore(py, psub(pcj.pmul(pc,yi),pm.pmul(ps,xi)));
438
+ px += PacketSize;
439
+ py += PacketSize;
440
+ }
441
+ }
442
+
443
+ /*** non-vectorized path ***/
444
+ else
445
+ {
446
+ apply_rotation_in_the_plane_selector<Scalar,OtherScalar,SizeAtCompileTime,MinAlignment,false>::run(x,incrx,y,incry,size,c,s);
447
+ }
448
+ }
449
+ };
450
+
451
+ template<typename VectorX, typename VectorY, typename OtherScalar>
452
+ EIGEN_DEVICE_FUNC
453
+ void /*EIGEN_DONT_INLINE*/ apply_rotation_in_the_plane(DenseBase<VectorX>& xpr_x, DenseBase<VectorY>& xpr_y, const JacobiRotation<OtherScalar>& j)
454
+ {
455
+ typedef typename VectorX::Scalar Scalar;
456
+ const bool Vectorizable = (int(VectorX::Flags) & int(VectorY::Flags) & PacketAccessBit)
457
+ && (int(packet_traits<Scalar>::size) == int(packet_traits<OtherScalar>::size));
458
+
459
+ eigen_assert(xpr_x.size() == xpr_y.size());
460
+ Index size = xpr_x.size();
461
+ Index incrx = xpr_x.derived().innerStride();
462
+ Index incry = xpr_y.derived().innerStride();
463
+
464
+ Scalar* EIGEN_RESTRICT x = &xpr_x.derived().coeffRef(0);
465
+ Scalar* EIGEN_RESTRICT y = &xpr_y.derived().coeffRef(0);
466
+
467
+ OtherScalar c = j.c();
468
+ OtherScalar s = j.s();
469
+ if (c==OtherScalar(1) && s==OtherScalar(0))
470
+ return;
471
+
472
+ apply_rotation_in_the_plane_selector<
473
+ Scalar,OtherScalar,
474
+ VectorX::SizeAtCompileTime,
475
+ EIGEN_PLAIN_ENUM_MIN(evaluator<VectorX>::Alignment, evaluator<VectorY>::Alignment),
476
+ Vectorizable>::run(x,incrx,y,incry,size,c,s);
477
+ }
478
+
479
+ } // end namespace internal
480
+
481
+ } // end namespace Eigen
482
+
483
+ #endif // EIGEN_JACOBI_H