umappp 0.1.2

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Files changed (395) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +25 -0
  3. data/README.md +110 -0
  4. data/ext/umappp/extconf.rb +25 -0
  5. data/ext/umappp/numo.hpp +867 -0
  6. data/ext/umappp/umappp.cpp +225 -0
  7. data/lib/umappp/version.rb +5 -0
  8. data/lib/umappp.rb +41 -0
  9. data/vendor/Eigen/Cholesky +45 -0
  10. data/vendor/Eigen/CholmodSupport +48 -0
  11. data/vendor/Eigen/Core +384 -0
  12. data/vendor/Eigen/Dense +7 -0
  13. data/vendor/Eigen/Eigen +2 -0
  14. data/vendor/Eigen/Eigenvalues +60 -0
  15. data/vendor/Eigen/Geometry +59 -0
  16. data/vendor/Eigen/Householder +29 -0
  17. data/vendor/Eigen/IterativeLinearSolvers +48 -0
  18. data/vendor/Eigen/Jacobi +32 -0
  19. data/vendor/Eigen/KLUSupport +41 -0
  20. data/vendor/Eigen/LU +47 -0
  21. data/vendor/Eigen/MetisSupport +35 -0
  22. data/vendor/Eigen/OrderingMethods +70 -0
  23. data/vendor/Eigen/PaStiXSupport +49 -0
  24. data/vendor/Eigen/PardisoSupport +35 -0
  25. data/vendor/Eigen/QR +50 -0
  26. data/vendor/Eigen/QtAlignedMalloc +39 -0
  27. data/vendor/Eigen/SPQRSupport +34 -0
  28. data/vendor/Eigen/SVD +50 -0
  29. data/vendor/Eigen/Sparse +34 -0
  30. data/vendor/Eigen/SparseCholesky +37 -0
  31. data/vendor/Eigen/SparseCore +69 -0
  32. data/vendor/Eigen/SparseLU +50 -0
  33. data/vendor/Eigen/SparseQR +36 -0
  34. data/vendor/Eigen/StdDeque +27 -0
  35. data/vendor/Eigen/StdList +26 -0
  36. data/vendor/Eigen/StdVector +27 -0
  37. data/vendor/Eigen/SuperLUSupport +64 -0
  38. data/vendor/Eigen/UmfPackSupport +40 -0
  39. data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
  40. data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
  41. data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  42. data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
  43. data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
  44. data/vendor/Eigen/src/Core/Array.h +417 -0
  45. data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
  46. data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
  47. data/vendor/Eigen/src/Core/Assign.h +90 -0
  48. data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
  49. data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
  50. data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
  51. data/vendor/Eigen/src/Core/Block.h +448 -0
  52. data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
  53. data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
  54. data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
  55. data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
  56. data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
  57. data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
  58. data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
  59. data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  60. data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  61. data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
  62. data/vendor/Eigen/src/Core/DenseBase.h +701 -0
  63. data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
  64. data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
  65. data/vendor/Eigen/src/Core/Diagonal.h +258 -0
  66. data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
  67. data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
  68. data/vendor/Eigen/src/Core/Dot.h +318 -0
  69. data/vendor/Eigen/src/Core/EigenBase.h +160 -0
  70. data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
  71. data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
  72. data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
  73. data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
  74. data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
  75. data/vendor/Eigen/src/Core/IO.h +258 -0
  76. data/vendor/Eigen/src/Core/IndexedView.h +237 -0
  77. data/vendor/Eigen/src/Core/Inverse.h +117 -0
  78. data/vendor/Eigen/src/Core/Map.h +171 -0
  79. data/vendor/Eigen/src/Core/MapBase.h +310 -0
  80. data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
  81. data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
  82. data/vendor/Eigen/src/Core/Matrix.h +565 -0
  83. data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
  84. data/vendor/Eigen/src/Core/NestByValue.h +85 -0
  85. data/vendor/Eigen/src/Core/NoAlias.h +109 -0
  86. data/vendor/Eigen/src/Core/NumTraits.h +335 -0
  87. data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  88. data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
  89. data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
  90. data/vendor/Eigen/src/Core/Product.h +191 -0
  91. data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
  92. data/vendor/Eigen/src/Core/Random.h +218 -0
  93. data/vendor/Eigen/src/Core/Redux.h +515 -0
  94. data/vendor/Eigen/src/Core/Ref.h +381 -0
  95. data/vendor/Eigen/src/Core/Replicate.h +142 -0
  96. data/vendor/Eigen/src/Core/Reshaped.h +454 -0
  97. data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
  98. data/vendor/Eigen/src/Core/Reverse.h +217 -0
  99. data/vendor/Eigen/src/Core/Select.h +164 -0
  100. data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
  101. data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  102. data/vendor/Eigen/src/Core/Solve.h +188 -0
  103. data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
  104. data/vendor/Eigen/src/Core/SolverBase.h +168 -0
  105. data/vendor/Eigen/src/Core/StableNorm.h +251 -0
  106. data/vendor/Eigen/src/Core/StlIterators.h +463 -0
  107. data/vendor/Eigen/src/Core/Stride.h +116 -0
  108. data/vendor/Eigen/src/Core/Swap.h +68 -0
  109. data/vendor/Eigen/src/Core/Transpose.h +464 -0
  110. data/vendor/Eigen/src/Core/Transpositions.h +386 -0
  111. data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
  112. data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
  113. data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
  114. data/vendor/Eigen/src/Core/Visitor.h +381 -0
  115. data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
  116. data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
  117. data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
  118. data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
  119. data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  120. data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
  121. data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
  122. data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  123. data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
  124. data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
  125. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  126. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  127. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  128. data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
  129. data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
  130. data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  131. data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
  132. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  133. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  134. data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
  135. data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
  136. data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  137. data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
  138. data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  139. data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  140. data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  141. data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  142. data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  143. data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  144. data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
  145. data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  146. data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
  147. data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
  148. data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  149. data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
  150. data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
  151. data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
  152. data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
  153. data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  154. data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  155. data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  156. data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  157. data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  158. data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  159. data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  160. data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  161. data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
  162. data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
  163. data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
  164. data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
  165. data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
  166. data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
  167. data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
  168. data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  169. data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
  170. data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
  171. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
  172. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
  173. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  174. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
  175. data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
  176. data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  177. data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
  178. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
  179. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
  180. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
  181. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  182. data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  183. data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
  184. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
  185. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
  186. data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  187. data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  188. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
  189. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
  190. data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
  191. data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
  192. data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  193. data/vendor/Eigen/src/Core/util/Constants.h +563 -0
  194. data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
  195. data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
  196. data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  197. data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
  198. data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
  199. data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
  200. data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
  201. data/vendor/Eigen/src/Core/util/Meta.h +812 -0
  202. data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
  203. data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
  204. data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  205. data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
  206. data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  207. data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
  208. data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  209. data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
  210. data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  211. data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  212. data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  213. data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  214. data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  215. data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  216. data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
  217. data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
  218. data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  219. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
  220. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  221. data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
  222. data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
  223. data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
  224. data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
  225. data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
  226. data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
  227. data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
  228. data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
  229. data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
  230. data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
  231. data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
  232. data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
  233. data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
  234. data/vendor/Eigen/src/Geometry/Translation.h +202 -0
  235. data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
  236. data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  237. data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
  238. data/vendor/Eigen/src/Householder/Householder.h +176 -0
  239. data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
  240. data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  241. data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
  242. data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
  243. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
  244. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
  245. data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
  246. data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
  247. data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
  248. data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
  249. data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  250. data/vendor/Eigen/src/LU/Determinant.h +117 -0
  251. data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
  252. data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
  253. data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
  254. data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  255. data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
  256. data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  257. data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
  258. data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
  259. data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
  260. data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  261. data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
  262. data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
  263. data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  264. data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
  265. data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
  266. data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
  267. data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  268. data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
  269. data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
  270. data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
  271. data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  272. data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
  273. data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  274. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
  275. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
  276. data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
  277. data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
  278. data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  279. data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  280. data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
  281. data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
  282. data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  283. data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
  284. data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
  285. data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
  286. data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
  287. data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  288. data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
  289. data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  290. data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
  291. data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
  292. data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
  293. data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  294. data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
  295. data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
  296. data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
  297. data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
  298. data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  299. data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  300. data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  301. data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  302. data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
  303. data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
  304. data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
  305. data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  306. data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
  307. data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  308. data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  309. data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  310. data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
  311. data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  312. data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  313. data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  314. data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  315. data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  316. data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  317. data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  318. data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  319. data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  320. data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  321. data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  322. data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  323. data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
  324. data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
  325. data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
  326. data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
  327. data/vendor/Eigen/src/StlSupport/details.h +84 -0
  328. data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
  329. data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
  330. data/vendor/Eigen/src/misc/Image.h +82 -0
  331. data/vendor/Eigen/src/misc/Kernel.h +79 -0
  332. data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
  333. data/vendor/Eigen/src/misc/blas.h +440 -0
  334. data/vendor/Eigen/src/misc/lapack.h +152 -0
  335. data/vendor/Eigen/src/misc/lapacke.h +16292 -0
  336. data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
  337. data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
  338. data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
  339. data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
  340. data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  341. data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
  342. data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  343. data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  344. data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
  345. data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
  346. data/vendor/aarand/aarand.hpp +114 -0
  347. data/vendor/annoy/annoylib.h +1495 -0
  348. data/vendor/annoy/kissrandom.h +120 -0
  349. data/vendor/annoy/mman.h +242 -0
  350. data/vendor/hnswlib/bruteforce.h +152 -0
  351. data/vendor/hnswlib/hnswalg.h +1192 -0
  352. data/vendor/hnswlib/hnswlib.h +108 -0
  353. data/vendor/hnswlib/space_ip.h +282 -0
  354. data/vendor/hnswlib/space_l2.h +281 -0
  355. data/vendor/hnswlib/visited_list_pool.h +79 -0
  356. data/vendor/irlba/irlba.hpp +575 -0
  357. data/vendor/irlba/lanczos.hpp +212 -0
  358. data/vendor/irlba/parallel.hpp +474 -0
  359. data/vendor/irlba/utils.hpp +224 -0
  360. data/vendor/irlba/wrappers.hpp +228 -0
  361. data/vendor/kmeans/Base.hpp +75 -0
  362. data/vendor/kmeans/Details.hpp +79 -0
  363. data/vendor/kmeans/HartiganWong.hpp +492 -0
  364. data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
  365. data/vendor/kmeans/InitializeNone.hpp +44 -0
  366. data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
  367. data/vendor/kmeans/InitializeRandom.hpp +91 -0
  368. data/vendor/kmeans/Kmeans.hpp +161 -0
  369. data/vendor/kmeans/Lloyd.hpp +134 -0
  370. data/vendor/kmeans/MiniBatch.hpp +269 -0
  371. data/vendor/kmeans/QuickSearch.hpp +179 -0
  372. data/vendor/kmeans/compute_centroids.hpp +32 -0
  373. data/vendor/kmeans/compute_wcss.hpp +27 -0
  374. data/vendor/kmeans/is_edge_case.hpp +42 -0
  375. data/vendor/kmeans/random.hpp +55 -0
  376. data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
  377. data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
  378. data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
  379. data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
  380. data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
  381. data/vendor/knncolle/knncolle.hpp +34 -0
  382. data/vendor/knncolle/utils/Base.hpp +100 -0
  383. data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
  384. data/vendor/knncolle/utils/distances.hpp +98 -0
  385. data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
  386. data/vendor/powerit/PowerIterations.hpp +157 -0
  387. data/vendor/umappp/NeighborList.hpp +37 -0
  388. data/vendor/umappp/Umap.hpp +662 -0
  389. data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
  390. data/vendor/umappp/find_ab.hpp +157 -0
  391. data/vendor/umappp/neighbor_similarities.hpp +136 -0
  392. data/vendor/umappp/optimize_layout.hpp +285 -0
  393. data/vendor/umappp/spectral_init.hpp +181 -0
  394. data/vendor/umappp/umappp.hpp +13 -0
  395. metadata +465 -0
@@ -0,0 +1,713 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
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+ //
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+ // Copyright (C) 2008-2009 Gael Guennebaud <gael.guennebaud@inria.fr>
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+ // Copyright (C) 2009 Benoit Jacob <jacob.benoit.1@gmail.com>
6
+ //
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+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_FULLPIVOTINGHOUSEHOLDERQR_H
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+ #define EIGEN_FULLPIVOTINGHOUSEHOLDERQR_H
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+
14
+ namespace Eigen {
15
+
16
+ namespace internal {
17
+
18
+ template<typename _MatrixType> struct traits<FullPivHouseholderQR<_MatrixType> >
19
+ : traits<_MatrixType>
20
+ {
21
+ typedef MatrixXpr XprKind;
22
+ typedef SolverStorage StorageKind;
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+ typedef int StorageIndex;
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+ enum { Flags = 0 };
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+ };
26
+
27
+ template<typename MatrixType> struct FullPivHouseholderQRMatrixQReturnType;
28
+
29
+ template<typename MatrixType>
30
+ struct traits<FullPivHouseholderQRMatrixQReturnType<MatrixType> >
31
+ {
32
+ typedef typename MatrixType::PlainObject ReturnType;
33
+ };
34
+
35
+ } // end namespace internal
36
+
37
+ /** \ingroup QR_Module
38
+ *
39
+ * \class FullPivHouseholderQR
40
+ *
41
+ * \brief Householder rank-revealing QR decomposition of a matrix with full pivoting
42
+ *
43
+ * \tparam _MatrixType the type of the matrix of which we are computing the QR decomposition
44
+ *
45
+ * This class performs a rank-revealing QR decomposition of a matrix \b A into matrices \b P, \b P', \b Q and \b R
46
+ * such that
47
+ * \f[
48
+ * \mathbf{P} \, \mathbf{A} \, \mathbf{P}' = \mathbf{Q} \, \mathbf{R}
49
+ * \f]
50
+ * by using Householder transformations. Here, \b P and \b P' are permutation matrices, \b Q a unitary matrix
51
+ * and \b R an upper triangular matrix.
52
+ *
53
+ * This decomposition performs a very prudent full pivoting in order to be rank-revealing and achieve optimal
54
+ * numerical stability. The trade-off is that it is slower than HouseholderQR and ColPivHouseholderQR.
55
+ *
56
+ * This class supports the \link InplaceDecomposition inplace decomposition \endlink mechanism.
57
+ *
58
+ * \sa MatrixBase::fullPivHouseholderQr()
59
+ */
60
+ template<typename _MatrixType> class FullPivHouseholderQR
61
+ : public SolverBase<FullPivHouseholderQR<_MatrixType> >
62
+ {
63
+ public:
64
+
65
+ typedef _MatrixType MatrixType;
66
+ typedef SolverBase<FullPivHouseholderQR> Base;
67
+ friend class SolverBase<FullPivHouseholderQR>;
68
+
69
+ EIGEN_GENERIC_PUBLIC_INTERFACE(FullPivHouseholderQR)
70
+ enum {
71
+ MaxRowsAtCompileTime = MatrixType::MaxRowsAtCompileTime,
72
+ MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime
73
+ };
74
+ typedef internal::FullPivHouseholderQRMatrixQReturnType<MatrixType> MatrixQReturnType;
75
+ typedef typename internal::plain_diag_type<MatrixType>::type HCoeffsType;
76
+ typedef Matrix<StorageIndex, 1,
77
+ EIGEN_SIZE_MIN_PREFER_DYNAMIC(ColsAtCompileTime,RowsAtCompileTime), RowMajor, 1,
78
+ EIGEN_SIZE_MIN_PREFER_FIXED(MaxColsAtCompileTime,MaxRowsAtCompileTime)> IntDiagSizeVectorType;
79
+ typedef PermutationMatrix<ColsAtCompileTime, MaxColsAtCompileTime> PermutationType;
80
+ typedef typename internal::plain_row_type<MatrixType>::type RowVectorType;
81
+ typedef typename internal::plain_col_type<MatrixType>::type ColVectorType;
82
+ typedef typename MatrixType::PlainObject PlainObject;
83
+
84
+ /** \brief Default Constructor.
85
+ *
86
+ * The default constructor is useful in cases in which the user intends to
87
+ * perform decompositions via FullPivHouseholderQR::compute(const MatrixType&).
88
+ */
89
+ FullPivHouseholderQR()
90
+ : m_qr(),
91
+ m_hCoeffs(),
92
+ m_rows_transpositions(),
93
+ m_cols_transpositions(),
94
+ m_cols_permutation(),
95
+ m_temp(),
96
+ m_isInitialized(false),
97
+ m_usePrescribedThreshold(false) {}
98
+
99
+ /** \brief Default Constructor with memory preallocation
100
+ *
101
+ * Like the default constructor but with preallocation of the internal data
102
+ * according to the specified problem \a size.
103
+ * \sa FullPivHouseholderQR()
104
+ */
105
+ FullPivHouseholderQR(Index rows, Index cols)
106
+ : m_qr(rows, cols),
107
+ m_hCoeffs((std::min)(rows,cols)),
108
+ m_rows_transpositions((std::min)(rows,cols)),
109
+ m_cols_transpositions((std::min)(rows,cols)),
110
+ m_cols_permutation(cols),
111
+ m_temp(cols),
112
+ m_isInitialized(false),
113
+ m_usePrescribedThreshold(false) {}
114
+
115
+ /** \brief Constructs a QR factorization from a given matrix
116
+ *
117
+ * This constructor computes the QR factorization of the matrix \a matrix by calling
118
+ * the method compute(). It is a short cut for:
119
+ *
120
+ * \code
121
+ * FullPivHouseholderQR<MatrixType> qr(matrix.rows(), matrix.cols());
122
+ * qr.compute(matrix);
123
+ * \endcode
124
+ *
125
+ * \sa compute()
126
+ */
127
+ template<typename InputType>
128
+ explicit FullPivHouseholderQR(const EigenBase<InputType>& matrix)
129
+ : m_qr(matrix.rows(), matrix.cols()),
130
+ m_hCoeffs((std::min)(matrix.rows(), matrix.cols())),
131
+ m_rows_transpositions((std::min)(matrix.rows(), matrix.cols())),
132
+ m_cols_transpositions((std::min)(matrix.rows(), matrix.cols())),
133
+ m_cols_permutation(matrix.cols()),
134
+ m_temp(matrix.cols()),
135
+ m_isInitialized(false),
136
+ m_usePrescribedThreshold(false)
137
+ {
138
+ compute(matrix.derived());
139
+ }
140
+
141
+ /** \brief Constructs a QR factorization from a given matrix
142
+ *
143
+ * This overloaded constructor is provided for \link InplaceDecomposition inplace decomposition \endlink when \c MatrixType is a Eigen::Ref.
144
+ *
145
+ * \sa FullPivHouseholderQR(const EigenBase&)
146
+ */
147
+ template<typename InputType>
148
+ explicit FullPivHouseholderQR(EigenBase<InputType>& matrix)
149
+ : m_qr(matrix.derived()),
150
+ m_hCoeffs((std::min)(matrix.rows(), matrix.cols())),
151
+ m_rows_transpositions((std::min)(matrix.rows(), matrix.cols())),
152
+ m_cols_transpositions((std::min)(matrix.rows(), matrix.cols())),
153
+ m_cols_permutation(matrix.cols()),
154
+ m_temp(matrix.cols()),
155
+ m_isInitialized(false),
156
+ m_usePrescribedThreshold(false)
157
+ {
158
+ computeInPlace();
159
+ }
160
+
161
+ #ifdef EIGEN_PARSED_BY_DOXYGEN
162
+ /** This method finds a solution x to the equation Ax=b, where A is the matrix of which
163
+ * \c *this is the QR decomposition.
164
+ *
165
+ * \param b the right-hand-side of the equation to solve.
166
+ *
167
+ * \returns the exact or least-square solution if the rank is greater or equal to the number of columns of A,
168
+ * and an arbitrary solution otherwise.
169
+ *
170
+ * \note_about_checking_solutions
171
+ *
172
+ * \note_about_arbitrary_choice_of_solution
173
+ *
174
+ * Example: \include FullPivHouseholderQR_solve.cpp
175
+ * Output: \verbinclude FullPivHouseholderQR_solve.out
176
+ */
177
+ template<typename Rhs>
178
+ inline const Solve<FullPivHouseholderQR, Rhs>
179
+ solve(const MatrixBase<Rhs>& b) const;
180
+ #endif
181
+
182
+ /** \returns Expression object representing the matrix Q
183
+ */
184
+ MatrixQReturnType matrixQ(void) const;
185
+
186
+ /** \returns a reference to the matrix where the Householder QR decomposition is stored
187
+ */
188
+ const MatrixType& matrixQR() const
189
+ {
190
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
191
+ return m_qr;
192
+ }
193
+
194
+ template<typename InputType>
195
+ FullPivHouseholderQR& compute(const EigenBase<InputType>& matrix);
196
+
197
+ /** \returns a const reference to the column permutation matrix */
198
+ const PermutationType& colsPermutation() const
199
+ {
200
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
201
+ return m_cols_permutation;
202
+ }
203
+
204
+ /** \returns a const reference to the vector of indices representing the rows transpositions */
205
+ const IntDiagSizeVectorType& rowsTranspositions() const
206
+ {
207
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
208
+ return m_rows_transpositions;
209
+ }
210
+
211
+ /** \returns the absolute value of the determinant of the matrix of which
212
+ * *this is the QR decomposition. It has only linear complexity
213
+ * (that is, O(n) where n is the dimension of the square matrix)
214
+ * as the QR decomposition has already been computed.
215
+ *
216
+ * \note This is only for square matrices.
217
+ *
218
+ * \warning a determinant can be very big or small, so for matrices
219
+ * of large enough dimension, there is a risk of overflow/underflow.
220
+ * One way to work around that is to use logAbsDeterminant() instead.
221
+ *
222
+ * \sa logAbsDeterminant(), MatrixBase::determinant()
223
+ */
224
+ typename MatrixType::RealScalar absDeterminant() const;
225
+
226
+ /** \returns the natural log of the absolute value of the determinant of the matrix of which
227
+ * *this is the QR decomposition. It has only linear complexity
228
+ * (that is, O(n) where n is the dimension of the square matrix)
229
+ * as the QR decomposition has already been computed.
230
+ *
231
+ * \note This is only for square matrices.
232
+ *
233
+ * \note This method is useful to work around the risk of overflow/underflow that's inherent
234
+ * to determinant computation.
235
+ *
236
+ * \sa absDeterminant(), MatrixBase::determinant()
237
+ */
238
+ typename MatrixType::RealScalar logAbsDeterminant() const;
239
+
240
+ /** \returns the rank of the matrix of which *this is the QR decomposition.
241
+ *
242
+ * \note This method has to determine which pivots should be considered nonzero.
243
+ * For that, it uses the threshold value that you can control by calling
244
+ * setThreshold(const RealScalar&).
245
+ */
246
+ inline Index rank() const
247
+ {
248
+ using std::abs;
249
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
250
+ RealScalar premultiplied_threshold = abs(m_maxpivot) * threshold();
251
+ Index result = 0;
252
+ for(Index i = 0; i < m_nonzero_pivots; ++i)
253
+ result += (abs(m_qr.coeff(i,i)) > premultiplied_threshold);
254
+ return result;
255
+ }
256
+
257
+ /** \returns the dimension of the kernel of the matrix of which *this is the QR decomposition.
258
+ *
259
+ * \note This method has to determine which pivots should be considered nonzero.
260
+ * For that, it uses the threshold value that you can control by calling
261
+ * setThreshold(const RealScalar&).
262
+ */
263
+ inline Index dimensionOfKernel() const
264
+ {
265
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
266
+ return cols() - rank();
267
+ }
268
+
269
+ /** \returns true if the matrix of which *this is the QR decomposition represents an injective
270
+ * linear map, i.e. has trivial kernel; false otherwise.
271
+ *
272
+ * \note This method has to determine which pivots should be considered nonzero.
273
+ * For that, it uses the threshold value that you can control by calling
274
+ * setThreshold(const RealScalar&).
275
+ */
276
+ inline bool isInjective() const
277
+ {
278
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
279
+ return rank() == cols();
280
+ }
281
+
282
+ /** \returns true if the matrix of which *this is the QR decomposition represents a surjective
283
+ * linear map; false otherwise.
284
+ *
285
+ * \note This method has to determine which pivots should be considered nonzero.
286
+ * For that, it uses the threshold value that you can control by calling
287
+ * setThreshold(const RealScalar&).
288
+ */
289
+ inline bool isSurjective() const
290
+ {
291
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
292
+ return rank() == rows();
293
+ }
294
+
295
+ /** \returns true if the matrix of which *this is the QR decomposition is invertible.
296
+ *
297
+ * \note This method has to determine which pivots should be considered nonzero.
298
+ * For that, it uses the threshold value that you can control by calling
299
+ * setThreshold(const RealScalar&).
300
+ */
301
+ inline bool isInvertible() const
302
+ {
303
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
304
+ return isInjective() && isSurjective();
305
+ }
306
+
307
+ /** \returns the inverse of the matrix of which *this is the QR decomposition.
308
+ *
309
+ * \note If this matrix is not invertible, the returned matrix has undefined coefficients.
310
+ * Use isInvertible() to first determine whether this matrix is invertible.
311
+ */
312
+ inline const Inverse<FullPivHouseholderQR> inverse() const
313
+ {
314
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
315
+ return Inverse<FullPivHouseholderQR>(*this);
316
+ }
317
+
318
+ inline Index rows() const { return m_qr.rows(); }
319
+ inline Index cols() const { return m_qr.cols(); }
320
+
321
+ /** \returns a const reference to the vector of Householder coefficients used to represent the factor \c Q.
322
+ *
323
+ * For advanced uses only.
324
+ */
325
+ const HCoeffsType& hCoeffs() const { return m_hCoeffs; }
326
+
327
+ /** Allows to prescribe a threshold to be used by certain methods, such as rank(),
328
+ * who need to determine when pivots are to be considered nonzero. This is not used for the
329
+ * QR decomposition itself.
330
+ *
331
+ * When it needs to get the threshold value, Eigen calls threshold(). By default, this
332
+ * uses a formula to automatically determine a reasonable threshold.
333
+ * Once you have called the present method setThreshold(const RealScalar&),
334
+ * your value is used instead.
335
+ *
336
+ * \param threshold The new value to use as the threshold.
337
+ *
338
+ * A pivot will be considered nonzero if its absolute value is strictly greater than
339
+ * \f$ \vert pivot \vert \leqslant threshold \times \vert maxpivot \vert \f$
340
+ * where maxpivot is the biggest pivot.
341
+ *
342
+ * If you want to come back to the default behavior, call setThreshold(Default_t)
343
+ */
344
+ FullPivHouseholderQR& setThreshold(const RealScalar& threshold)
345
+ {
346
+ m_usePrescribedThreshold = true;
347
+ m_prescribedThreshold = threshold;
348
+ return *this;
349
+ }
350
+
351
+ /** Allows to come back to the default behavior, letting Eigen use its default formula for
352
+ * determining the threshold.
353
+ *
354
+ * You should pass the special object Eigen::Default as parameter here.
355
+ * \code qr.setThreshold(Eigen::Default); \endcode
356
+ *
357
+ * See the documentation of setThreshold(const RealScalar&).
358
+ */
359
+ FullPivHouseholderQR& setThreshold(Default_t)
360
+ {
361
+ m_usePrescribedThreshold = false;
362
+ return *this;
363
+ }
364
+
365
+ /** Returns the threshold that will be used by certain methods such as rank().
366
+ *
367
+ * See the documentation of setThreshold(const RealScalar&).
368
+ */
369
+ RealScalar threshold() const
370
+ {
371
+ eigen_assert(m_isInitialized || m_usePrescribedThreshold);
372
+ return m_usePrescribedThreshold ? m_prescribedThreshold
373
+ // this formula comes from experimenting (see "LU precision tuning" thread on the list)
374
+ // and turns out to be identical to Higham's formula used already in LDLt.
375
+ : NumTraits<Scalar>::epsilon() * RealScalar(m_qr.diagonalSize());
376
+ }
377
+
378
+ /** \returns the number of nonzero pivots in the QR decomposition.
379
+ * Here nonzero is meant in the exact sense, not in a fuzzy sense.
380
+ * So that notion isn't really intrinsically interesting, but it is
381
+ * still useful when implementing algorithms.
382
+ *
383
+ * \sa rank()
384
+ */
385
+ inline Index nonzeroPivots() const
386
+ {
387
+ eigen_assert(m_isInitialized && "LU is not initialized.");
388
+ return m_nonzero_pivots;
389
+ }
390
+
391
+ /** \returns the absolute value of the biggest pivot, i.e. the biggest
392
+ * diagonal coefficient of U.
393
+ */
394
+ RealScalar maxPivot() const { return m_maxpivot; }
395
+
396
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
397
+ template<typename RhsType, typename DstType>
398
+ void _solve_impl(const RhsType &rhs, DstType &dst) const;
399
+
400
+ template<bool Conjugate, typename RhsType, typename DstType>
401
+ void _solve_impl_transposed(const RhsType &rhs, DstType &dst) const;
402
+ #endif
403
+
404
+ protected:
405
+
406
+ static void check_template_parameters()
407
+ {
408
+ EIGEN_STATIC_ASSERT_NON_INTEGER(Scalar);
409
+ }
410
+
411
+ void computeInPlace();
412
+
413
+ MatrixType m_qr;
414
+ HCoeffsType m_hCoeffs;
415
+ IntDiagSizeVectorType m_rows_transpositions;
416
+ IntDiagSizeVectorType m_cols_transpositions;
417
+ PermutationType m_cols_permutation;
418
+ RowVectorType m_temp;
419
+ bool m_isInitialized, m_usePrescribedThreshold;
420
+ RealScalar m_prescribedThreshold, m_maxpivot;
421
+ Index m_nonzero_pivots;
422
+ RealScalar m_precision;
423
+ Index m_det_pq;
424
+ };
425
+
426
+ template<typename MatrixType>
427
+ typename MatrixType::RealScalar FullPivHouseholderQR<MatrixType>::absDeterminant() const
428
+ {
429
+ using std::abs;
430
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
431
+ eigen_assert(m_qr.rows() == m_qr.cols() && "You can't take the determinant of a non-square matrix!");
432
+ return abs(m_qr.diagonal().prod());
433
+ }
434
+
435
+ template<typename MatrixType>
436
+ typename MatrixType::RealScalar FullPivHouseholderQR<MatrixType>::logAbsDeterminant() const
437
+ {
438
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
439
+ eigen_assert(m_qr.rows() == m_qr.cols() && "You can't take the determinant of a non-square matrix!");
440
+ return m_qr.diagonal().cwiseAbs().array().log().sum();
441
+ }
442
+
443
+ /** Performs the QR factorization of the given matrix \a matrix. The result of
444
+ * the factorization is stored into \c *this, and a reference to \c *this
445
+ * is returned.
446
+ *
447
+ * \sa class FullPivHouseholderQR, FullPivHouseholderQR(const MatrixType&)
448
+ */
449
+ template<typename MatrixType>
450
+ template<typename InputType>
451
+ FullPivHouseholderQR<MatrixType>& FullPivHouseholderQR<MatrixType>::compute(const EigenBase<InputType>& matrix)
452
+ {
453
+ m_qr = matrix.derived();
454
+ computeInPlace();
455
+ return *this;
456
+ }
457
+
458
+ template<typename MatrixType>
459
+ void FullPivHouseholderQR<MatrixType>::computeInPlace()
460
+ {
461
+ check_template_parameters();
462
+
463
+ using std::abs;
464
+ Index rows = m_qr.rows();
465
+ Index cols = m_qr.cols();
466
+ Index size = (std::min)(rows,cols);
467
+
468
+
469
+ m_hCoeffs.resize(size);
470
+
471
+ m_temp.resize(cols);
472
+
473
+ m_precision = NumTraits<Scalar>::epsilon() * RealScalar(size);
474
+
475
+ m_rows_transpositions.resize(size);
476
+ m_cols_transpositions.resize(size);
477
+ Index number_of_transpositions = 0;
478
+
479
+ RealScalar biggest(0);
480
+
481
+ m_nonzero_pivots = size; // the generic case is that in which all pivots are nonzero (invertible case)
482
+ m_maxpivot = RealScalar(0);
483
+
484
+ for (Index k = 0; k < size; ++k)
485
+ {
486
+ Index row_of_biggest_in_corner, col_of_biggest_in_corner;
487
+ typedef internal::scalar_score_coeff_op<Scalar> Scoring;
488
+ typedef typename Scoring::result_type Score;
489
+
490
+ Score score = m_qr.bottomRightCorner(rows-k, cols-k)
491
+ .unaryExpr(Scoring())
492
+ .maxCoeff(&row_of_biggest_in_corner, &col_of_biggest_in_corner);
493
+ row_of_biggest_in_corner += k;
494
+ col_of_biggest_in_corner += k;
495
+ RealScalar biggest_in_corner = internal::abs_knowing_score<Scalar>()(m_qr(row_of_biggest_in_corner, col_of_biggest_in_corner), score);
496
+ if(k==0) biggest = biggest_in_corner;
497
+
498
+ // if the corner is negligible, then we have less than full rank, and we can finish early
499
+ if(internal::isMuchSmallerThan(biggest_in_corner, biggest, m_precision))
500
+ {
501
+ m_nonzero_pivots = k;
502
+ for(Index i = k; i < size; i++)
503
+ {
504
+ m_rows_transpositions.coeffRef(i) = internal::convert_index<StorageIndex>(i);
505
+ m_cols_transpositions.coeffRef(i) = internal::convert_index<StorageIndex>(i);
506
+ m_hCoeffs.coeffRef(i) = Scalar(0);
507
+ }
508
+ break;
509
+ }
510
+
511
+ m_rows_transpositions.coeffRef(k) = internal::convert_index<StorageIndex>(row_of_biggest_in_corner);
512
+ m_cols_transpositions.coeffRef(k) = internal::convert_index<StorageIndex>(col_of_biggest_in_corner);
513
+ if(k != row_of_biggest_in_corner) {
514
+ m_qr.row(k).tail(cols-k).swap(m_qr.row(row_of_biggest_in_corner).tail(cols-k));
515
+ ++number_of_transpositions;
516
+ }
517
+ if(k != col_of_biggest_in_corner) {
518
+ m_qr.col(k).swap(m_qr.col(col_of_biggest_in_corner));
519
+ ++number_of_transpositions;
520
+ }
521
+
522
+ RealScalar beta;
523
+ m_qr.col(k).tail(rows-k).makeHouseholderInPlace(m_hCoeffs.coeffRef(k), beta);
524
+ m_qr.coeffRef(k,k) = beta;
525
+
526
+ // remember the maximum absolute value of diagonal coefficients
527
+ if(abs(beta) > m_maxpivot) m_maxpivot = abs(beta);
528
+
529
+ m_qr.bottomRightCorner(rows-k, cols-k-1)
530
+ .applyHouseholderOnTheLeft(m_qr.col(k).tail(rows-k-1), m_hCoeffs.coeffRef(k), &m_temp.coeffRef(k+1));
531
+ }
532
+
533
+ m_cols_permutation.setIdentity(cols);
534
+ for(Index k = 0; k < size; ++k)
535
+ m_cols_permutation.applyTranspositionOnTheRight(k, m_cols_transpositions.coeff(k));
536
+
537
+ m_det_pq = (number_of_transpositions%2) ? -1 : 1;
538
+ m_isInitialized = true;
539
+ }
540
+
541
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
542
+ template<typename _MatrixType>
543
+ template<typename RhsType, typename DstType>
544
+ void FullPivHouseholderQR<_MatrixType>::_solve_impl(const RhsType &rhs, DstType &dst) const
545
+ {
546
+ const Index l_rank = rank();
547
+
548
+ // FIXME introduce nonzeroPivots() and use it here. and more generally,
549
+ // make the same improvements in this dec as in FullPivLU.
550
+ if(l_rank==0)
551
+ {
552
+ dst.setZero();
553
+ return;
554
+ }
555
+
556
+ typename RhsType::PlainObject c(rhs);
557
+
558
+ Matrix<typename RhsType::Scalar,1,RhsType::ColsAtCompileTime> temp(rhs.cols());
559
+ for (Index k = 0; k < l_rank; ++k)
560
+ {
561
+ Index remainingSize = rows()-k;
562
+ c.row(k).swap(c.row(m_rows_transpositions.coeff(k)));
563
+ c.bottomRightCorner(remainingSize, rhs.cols())
564
+ .applyHouseholderOnTheLeft(m_qr.col(k).tail(remainingSize-1),
565
+ m_hCoeffs.coeff(k), &temp.coeffRef(0));
566
+ }
567
+
568
+ m_qr.topLeftCorner(l_rank, l_rank)
569
+ .template triangularView<Upper>()
570
+ .solveInPlace(c.topRows(l_rank));
571
+
572
+ for(Index i = 0; i < l_rank; ++i) dst.row(m_cols_permutation.indices().coeff(i)) = c.row(i);
573
+ for(Index i = l_rank; i < cols(); ++i) dst.row(m_cols_permutation.indices().coeff(i)).setZero();
574
+ }
575
+
576
+ template<typename _MatrixType>
577
+ template<bool Conjugate, typename RhsType, typename DstType>
578
+ void FullPivHouseholderQR<_MatrixType>::_solve_impl_transposed(const RhsType &rhs, DstType &dst) const
579
+ {
580
+ const Index l_rank = rank();
581
+
582
+ if(l_rank == 0)
583
+ {
584
+ dst.setZero();
585
+ return;
586
+ }
587
+
588
+ typename RhsType::PlainObject c(m_cols_permutation.transpose()*rhs);
589
+
590
+ m_qr.topLeftCorner(l_rank, l_rank)
591
+ .template triangularView<Upper>()
592
+ .transpose().template conjugateIf<Conjugate>()
593
+ .solveInPlace(c.topRows(l_rank));
594
+
595
+ dst.topRows(l_rank) = c.topRows(l_rank);
596
+ dst.bottomRows(rows()-l_rank).setZero();
597
+
598
+ Matrix<Scalar, 1, DstType::ColsAtCompileTime> temp(dst.cols());
599
+ const Index size = (std::min)(rows(), cols());
600
+ for (Index k = size-1; k >= 0; --k)
601
+ {
602
+ Index remainingSize = rows()-k;
603
+
604
+ dst.bottomRightCorner(remainingSize, dst.cols())
605
+ .applyHouseholderOnTheLeft(m_qr.col(k).tail(remainingSize-1).template conjugateIf<!Conjugate>(),
606
+ m_hCoeffs.template conjugateIf<Conjugate>().coeff(k), &temp.coeffRef(0));
607
+
608
+ dst.row(k).swap(dst.row(m_rows_transpositions.coeff(k)));
609
+ }
610
+ }
611
+ #endif
612
+
613
+ namespace internal {
614
+
615
+ template<typename DstXprType, typename MatrixType>
616
+ struct Assignment<DstXprType, Inverse<FullPivHouseholderQR<MatrixType> >, internal::assign_op<typename DstXprType::Scalar,typename FullPivHouseholderQR<MatrixType>::Scalar>, Dense2Dense>
617
+ {
618
+ typedef FullPivHouseholderQR<MatrixType> QrType;
619
+ typedef Inverse<QrType> SrcXprType;
620
+ static void run(DstXprType &dst, const SrcXprType &src, const internal::assign_op<typename DstXprType::Scalar,typename QrType::Scalar> &)
621
+ {
622
+ dst = src.nestedExpression().solve(MatrixType::Identity(src.rows(), src.cols()));
623
+ }
624
+ };
625
+
626
+ /** \ingroup QR_Module
627
+ *
628
+ * \brief Expression type for return value of FullPivHouseholderQR::matrixQ()
629
+ *
630
+ * \tparam MatrixType type of underlying dense matrix
631
+ */
632
+ template<typename MatrixType> struct FullPivHouseholderQRMatrixQReturnType
633
+ : public ReturnByValue<FullPivHouseholderQRMatrixQReturnType<MatrixType> >
634
+ {
635
+ public:
636
+ typedef typename FullPivHouseholderQR<MatrixType>::IntDiagSizeVectorType IntDiagSizeVectorType;
637
+ typedef typename internal::plain_diag_type<MatrixType>::type HCoeffsType;
638
+ typedef Matrix<typename MatrixType::Scalar, 1, MatrixType::RowsAtCompileTime, RowMajor, 1,
639
+ MatrixType::MaxRowsAtCompileTime> WorkVectorType;
640
+
641
+ FullPivHouseholderQRMatrixQReturnType(const MatrixType& qr,
642
+ const HCoeffsType& hCoeffs,
643
+ const IntDiagSizeVectorType& rowsTranspositions)
644
+ : m_qr(qr),
645
+ m_hCoeffs(hCoeffs),
646
+ m_rowsTranspositions(rowsTranspositions)
647
+ {}
648
+
649
+ template <typename ResultType>
650
+ void evalTo(ResultType& result) const
651
+ {
652
+ const Index rows = m_qr.rows();
653
+ WorkVectorType workspace(rows);
654
+ evalTo(result, workspace);
655
+ }
656
+
657
+ template <typename ResultType>
658
+ void evalTo(ResultType& result, WorkVectorType& workspace) const
659
+ {
660
+ using numext::conj;
661
+ // compute the product H'_0 H'_1 ... H'_n-1,
662
+ // where H_k is the k-th Householder transformation I - h_k v_k v_k'
663
+ // and v_k is the k-th Householder vector [1,m_qr(k+1,k), m_qr(k+2,k), ...]
664
+ const Index rows = m_qr.rows();
665
+ const Index cols = m_qr.cols();
666
+ const Index size = (std::min)(rows, cols);
667
+ workspace.resize(rows);
668
+ result.setIdentity(rows, rows);
669
+ for (Index k = size-1; k >= 0; k--)
670
+ {
671
+ result.block(k, k, rows-k, rows-k)
672
+ .applyHouseholderOnTheLeft(m_qr.col(k).tail(rows-k-1), conj(m_hCoeffs.coeff(k)), &workspace.coeffRef(k));
673
+ result.row(k).swap(result.row(m_rowsTranspositions.coeff(k)));
674
+ }
675
+ }
676
+
677
+ Index rows() const { return m_qr.rows(); }
678
+ Index cols() const { return m_qr.rows(); }
679
+
680
+ protected:
681
+ typename MatrixType::Nested m_qr;
682
+ typename HCoeffsType::Nested m_hCoeffs;
683
+ typename IntDiagSizeVectorType::Nested m_rowsTranspositions;
684
+ };
685
+
686
+ // template<typename MatrixType>
687
+ // struct evaluator<FullPivHouseholderQRMatrixQReturnType<MatrixType> >
688
+ // : public evaluator<ReturnByValue<FullPivHouseholderQRMatrixQReturnType<MatrixType> > >
689
+ // {};
690
+
691
+ } // end namespace internal
692
+
693
+ template<typename MatrixType>
694
+ inline typename FullPivHouseholderQR<MatrixType>::MatrixQReturnType FullPivHouseholderQR<MatrixType>::matrixQ() const
695
+ {
696
+ eigen_assert(m_isInitialized && "FullPivHouseholderQR is not initialized.");
697
+ return MatrixQReturnType(m_qr, m_hCoeffs, m_rows_transpositions);
698
+ }
699
+
700
+ /** \return the full-pivoting Householder QR decomposition of \c *this.
701
+ *
702
+ * \sa class FullPivHouseholderQR
703
+ */
704
+ template<typename Derived>
705
+ const FullPivHouseholderQR<typename MatrixBase<Derived>::PlainObject>
706
+ MatrixBase<Derived>::fullPivHouseholderQr() const
707
+ {
708
+ return FullPivHouseholderQR<PlainObject>(eval());
709
+ }
710
+
711
+ } // end namespace Eigen
712
+
713
+ #endif // EIGEN_FULLPIVOTINGHOUSEHOLDERQR_H