umappp 0.1.2

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Files changed (395) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +25 -0
  3. data/README.md +110 -0
  4. data/ext/umappp/extconf.rb +25 -0
  5. data/ext/umappp/numo.hpp +867 -0
  6. data/ext/umappp/umappp.cpp +225 -0
  7. data/lib/umappp/version.rb +5 -0
  8. data/lib/umappp.rb +41 -0
  9. data/vendor/Eigen/Cholesky +45 -0
  10. data/vendor/Eigen/CholmodSupport +48 -0
  11. data/vendor/Eigen/Core +384 -0
  12. data/vendor/Eigen/Dense +7 -0
  13. data/vendor/Eigen/Eigen +2 -0
  14. data/vendor/Eigen/Eigenvalues +60 -0
  15. data/vendor/Eigen/Geometry +59 -0
  16. data/vendor/Eigen/Householder +29 -0
  17. data/vendor/Eigen/IterativeLinearSolvers +48 -0
  18. data/vendor/Eigen/Jacobi +32 -0
  19. data/vendor/Eigen/KLUSupport +41 -0
  20. data/vendor/Eigen/LU +47 -0
  21. data/vendor/Eigen/MetisSupport +35 -0
  22. data/vendor/Eigen/OrderingMethods +70 -0
  23. data/vendor/Eigen/PaStiXSupport +49 -0
  24. data/vendor/Eigen/PardisoSupport +35 -0
  25. data/vendor/Eigen/QR +50 -0
  26. data/vendor/Eigen/QtAlignedMalloc +39 -0
  27. data/vendor/Eigen/SPQRSupport +34 -0
  28. data/vendor/Eigen/SVD +50 -0
  29. data/vendor/Eigen/Sparse +34 -0
  30. data/vendor/Eigen/SparseCholesky +37 -0
  31. data/vendor/Eigen/SparseCore +69 -0
  32. data/vendor/Eigen/SparseLU +50 -0
  33. data/vendor/Eigen/SparseQR +36 -0
  34. data/vendor/Eigen/StdDeque +27 -0
  35. data/vendor/Eigen/StdList +26 -0
  36. data/vendor/Eigen/StdVector +27 -0
  37. data/vendor/Eigen/SuperLUSupport +64 -0
  38. data/vendor/Eigen/UmfPackSupport +40 -0
  39. data/vendor/Eigen/src/Cholesky/LDLT.h +688 -0
  40. data/vendor/Eigen/src/Cholesky/LLT.h +558 -0
  41. data/vendor/Eigen/src/Cholesky/LLT_LAPACKE.h +99 -0
  42. data/vendor/Eigen/src/CholmodSupport/CholmodSupport.h +682 -0
  43. data/vendor/Eigen/src/Core/ArithmeticSequence.h +413 -0
  44. data/vendor/Eigen/src/Core/Array.h +417 -0
  45. data/vendor/Eigen/src/Core/ArrayBase.h +226 -0
  46. data/vendor/Eigen/src/Core/ArrayWrapper.h +209 -0
  47. data/vendor/Eigen/src/Core/Assign.h +90 -0
  48. data/vendor/Eigen/src/Core/AssignEvaluator.h +1010 -0
  49. data/vendor/Eigen/src/Core/Assign_MKL.h +178 -0
  50. data/vendor/Eigen/src/Core/BandMatrix.h +353 -0
  51. data/vendor/Eigen/src/Core/Block.h +448 -0
  52. data/vendor/Eigen/src/Core/BooleanRedux.h +162 -0
  53. data/vendor/Eigen/src/Core/CommaInitializer.h +164 -0
  54. data/vendor/Eigen/src/Core/ConditionEstimator.h +175 -0
  55. data/vendor/Eigen/src/Core/CoreEvaluators.h +1741 -0
  56. data/vendor/Eigen/src/Core/CoreIterators.h +132 -0
  57. data/vendor/Eigen/src/Core/CwiseBinaryOp.h +183 -0
  58. data/vendor/Eigen/src/Core/CwiseNullaryOp.h +1001 -0
  59. data/vendor/Eigen/src/Core/CwiseTernaryOp.h +197 -0
  60. data/vendor/Eigen/src/Core/CwiseUnaryOp.h +103 -0
  61. data/vendor/Eigen/src/Core/CwiseUnaryView.h +132 -0
  62. data/vendor/Eigen/src/Core/DenseBase.h +701 -0
  63. data/vendor/Eigen/src/Core/DenseCoeffsBase.h +685 -0
  64. data/vendor/Eigen/src/Core/DenseStorage.h +652 -0
  65. data/vendor/Eigen/src/Core/Diagonal.h +258 -0
  66. data/vendor/Eigen/src/Core/DiagonalMatrix.h +391 -0
  67. data/vendor/Eigen/src/Core/DiagonalProduct.h +28 -0
  68. data/vendor/Eigen/src/Core/Dot.h +318 -0
  69. data/vendor/Eigen/src/Core/EigenBase.h +160 -0
  70. data/vendor/Eigen/src/Core/ForceAlignedAccess.h +150 -0
  71. data/vendor/Eigen/src/Core/Fuzzy.h +155 -0
  72. data/vendor/Eigen/src/Core/GeneralProduct.h +465 -0
  73. data/vendor/Eigen/src/Core/GenericPacketMath.h +1040 -0
  74. data/vendor/Eigen/src/Core/GlobalFunctions.h +194 -0
  75. data/vendor/Eigen/src/Core/IO.h +258 -0
  76. data/vendor/Eigen/src/Core/IndexedView.h +237 -0
  77. data/vendor/Eigen/src/Core/Inverse.h +117 -0
  78. data/vendor/Eigen/src/Core/Map.h +171 -0
  79. data/vendor/Eigen/src/Core/MapBase.h +310 -0
  80. data/vendor/Eigen/src/Core/MathFunctions.h +2057 -0
  81. data/vendor/Eigen/src/Core/MathFunctionsImpl.h +200 -0
  82. data/vendor/Eigen/src/Core/Matrix.h +565 -0
  83. data/vendor/Eigen/src/Core/MatrixBase.h +547 -0
  84. data/vendor/Eigen/src/Core/NestByValue.h +85 -0
  85. data/vendor/Eigen/src/Core/NoAlias.h +109 -0
  86. data/vendor/Eigen/src/Core/NumTraits.h +335 -0
  87. data/vendor/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  88. data/vendor/Eigen/src/Core/PermutationMatrix.h +605 -0
  89. data/vendor/Eigen/src/Core/PlainObjectBase.h +1128 -0
  90. data/vendor/Eigen/src/Core/Product.h +191 -0
  91. data/vendor/Eigen/src/Core/ProductEvaluators.h +1179 -0
  92. data/vendor/Eigen/src/Core/Random.h +218 -0
  93. data/vendor/Eigen/src/Core/Redux.h +515 -0
  94. data/vendor/Eigen/src/Core/Ref.h +381 -0
  95. data/vendor/Eigen/src/Core/Replicate.h +142 -0
  96. data/vendor/Eigen/src/Core/Reshaped.h +454 -0
  97. data/vendor/Eigen/src/Core/ReturnByValue.h +119 -0
  98. data/vendor/Eigen/src/Core/Reverse.h +217 -0
  99. data/vendor/Eigen/src/Core/Select.h +164 -0
  100. data/vendor/Eigen/src/Core/SelfAdjointView.h +365 -0
  101. data/vendor/Eigen/src/Core/SelfCwiseBinaryOp.h +47 -0
  102. data/vendor/Eigen/src/Core/Solve.h +188 -0
  103. data/vendor/Eigen/src/Core/SolveTriangular.h +235 -0
  104. data/vendor/Eigen/src/Core/SolverBase.h +168 -0
  105. data/vendor/Eigen/src/Core/StableNorm.h +251 -0
  106. data/vendor/Eigen/src/Core/StlIterators.h +463 -0
  107. data/vendor/Eigen/src/Core/Stride.h +116 -0
  108. data/vendor/Eigen/src/Core/Swap.h +68 -0
  109. data/vendor/Eigen/src/Core/Transpose.h +464 -0
  110. data/vendor/Eigen/src/Core/Transpositions.h +386 -0
  111. data/vendor/Eigen/src/Core/TriangularMatrix.h +1001 -0
  112. data/vendor/Eigen/src/Core/VectorBlock.h +96 -0
  113. data/vendor/Eigen/src/Core/VectorwiseOp.h +784 -0
  114. data/vendor/Eigen/src/Core/Visitor.h +381 -0
  115. data/vendor/Eigen/src/Core/arch/AVX/Complex.h +372 -0
  116. data/vendor/Eigen/src/Core/arch/AVX/MathFunctions.h +228 -0
  117. data/vendor/Eigen/src/Core/arch/AVX/PacketMath.h +1574 -0
  118. data/vendor/Eigen/src/Core/arch/AVX/TypeCasting.h +115 -0
  119. data/vendor/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  120. data/vendor/Eigen/src/Core/arch/AVX512/MathFunctions.h +362 -0
  121. data/vendor/Eigen/src/Core/arch/AVX512/PacketMath.h +2303 -0
  122. data/vendor/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  123. data/vendor/Eigen/src/Core/arch/AltiVec/Complex.h +417 -0
  124. data/vendor/Eigen/src/Core/arch/AltiVec/MathFunctions.h +90 -0
  125. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  126. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  127. data/vendor/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  128. data/vendor/Eigen/src/Core/arch/AltiVec/PacketMath.h +2711 -0
  129. data/vendor/Eigen/src/Core/arch/CUDA/Complex.h +258 -0
  130. data/vendor/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  131. data/vendor/Eigen/src/Core/arch/Default/ConjHelper.h +117 -0
  132. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  133. data/vendor/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  134. data/vendor/Eigen/src/Core/arch/Default/Half.h +942 -0
  135. data/vendor/Eigen/src/Core/arch/Default/Settings.h +49 -0
  136. data/vendor/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  137. data/vendor/Eigen/src/Core/arch/GPU/MathFunctions.h +103 -0
  138. data/vendor/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  139. data/vendor/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  140. data/vendor/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  141. data/vendor/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  142. data/vendor/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  143. data/vendor/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  144. data/vendor/Eigen/src/Core/arch/NEON/Complex.h +584 -0
  145. data/vendor/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  146. data/vendor/Eigen/src/Core/arch/NEON/MathFunctions.h +75 -0
  147. data/vendor/Eigen/src/Core/arch/NEON/PacketMath.h +4587 -0
  148. data/vendor/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  149. data/vendor/Eigen/src/Core/arch/SSE/Complex.h +351 -0
  150. data/vendor/Eigen/src/Core/arch/SSE/MathFunctions.h +199 -0
  151. data/vendor/Eigen/src/Core/arch/SSE/PacketMath.h +1505 -0
  152. data/vendor/Eigen/src/Core/arch/SSE/TypeCasting.h +142 -0
  153. data/vendor/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  154. data/vendor/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  155. data/vendor/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  156. data/vendor/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  157. data/vendor/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  158. data/vendor/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  159. data/vendor/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  160. data/vendor/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  161. data/vendor/Eigen/src/Core/arch/ZVector/Complex.h +426 -0
  162. data/vendor/Eigen/src/Core/arch/ZVector/MathFunctions.h +233 -0
  163. data/vendor/Eigen/src/Core/arch/ZVector/PacketMath.h +1060 -0
  164. data/vendor/Eigen/src/Core/functors/AssignmentFunctors.h +177 -0
  165. data/vendor/Eigen/src/Core/functors/BinaryFunctors.h +541 -0
  166. data/vendor/Eigen/src/Core/functors/NullaryFunctors.h +189 -0
  167. data/vendor/Eigen/src/Core/functors/StlFunctors.h +166 -0
  168. data/vendor/Eigen/src/Core/functors/TernaryFunctors.h +25 -0
  169. data/vendor/Eigen/src/Core/functors/UnaryFunctors.h +1131 -0
  170. data/vendor/Eigen/src/Core/products/GeneralBlockPanelKernel.h +2645 -0
  171. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix.h +517 -0
  172. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +317 -0
  173. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +145 -0
  174. data/vendor/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +124 -0
  175. data/vendor/Eigen/src/Core/products/GeneralMatrixVector.h +518 -0
  176. data/vendor/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h +136 -0
  177. data/vendor/Eigen/src/Core/products/Parallelizer.h +180 -0
  178. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +544 -0
  179. data/vendor/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +295 -0
  180. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector.h +262 -0
  181. data/vendor/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h +118 -0
  182. data/vendor/Eigen/src/Core/products/SelfadjointProduct.h +133 -0
  183. data/vendor/Eigen/src/Core/products/SelfadjointRank2Update.h +94 -0
  184. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix.h +472 -0
  185. data/vendor/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +317 -0
  186. data/vendor/Eigen/src/Core/products/TriangularMatrixVector.h +350 -0
  187. data/vendor/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h +255 -0
  188. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix.h +337 -0
  189. data/vendor/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +167 -0
  190. data/vendor/Eigen/src/Core/products/TriangularSolverVector.h +148 -0
  191. data/vendor/Eigen/src/Core/util/BlasUtil.h +583 -0
  192. data/vendor/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  193. data/vendor/Eigen/src/Core/util/Constants.h +563 -0
  194. data/vendor/Eigen/src/Core/util/DisableStupidWarnings.h +106 -0
  195. data/vendor/Eigen/src/Core/util/ForwardDeclarations.h +322 -0
  196. data/vendor/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  197. data/vendor/Eigen/src/Core/util/IntegralConstant.h +272 -0
  198. data/vendor/Eigen/src/Core/util/MKL_support.h +137 -0
  199. data/vendor/Eigen/src/Core/util/Macros.h +1464 -0
  200. data/vendor/Eigen/src/Core/util/Memory.h +1163 -0
  201. data/vendor/Eigen/src/Core/util/Meta.h +812 -0
  202. data/vendor/Eigen/src/Core/util/NonMPL2.h +3 -0
  203. data/vendor/Eigen/src/Core/util/ReenableStupidWarnings.h +31 -0
  204. data/vendor/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  205. data/vendor/Eigen/src/Core/util/StaticAssert.h +221 -0
  206. data/vendor/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  207. data/vendor/Eigen/src/Core/util/XprHelper.h +856 -0
  208. data/vendor/Eigen/src/Eigenvalues/ComplexEigenSolver.h +346 -0
  209. data/vendor/Eigen/src/Eigenvalues/ComplexSchur.h +462 -0
  210. data/vendor/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +91 -0
  211. data/vendor/Eigen/src/Eigenvalues/EigenSolver.h +622 -0
  212. data/vendor/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +418 -0
  213. data/vendor/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +226 -0
  214. data/vendor/Eigen/src/Eigenvalues/HessenbergDecomposition.h +374 -0
  215. data/vendor/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +158 -0
  216. data/vendor/Eigen/src/Eigenvalues/RealQZ.h +657 -0
  217. data/vendor/Eigen/src/Eigenvalues/RealSchur.h +558 -0
  218. data/vendor/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +77 -0
  219. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +904 -0
  220. data/vendor/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +87 -0
  221. data/vendor/Eigen/src/Eigenvalues/Tridiagonalization.h +561 -0
  222. data/vendor/Eigen/src/Geometry/AlignedBox.h +486 -0
  223. data/vendor/Eigen/src/Geometry/AngleAxis.h +247 -0
  224. data/vendor/Eigen/src/Geometry/EulerAngles.h +114 -0
  225. data/vendor/Eigen/src/Geometry/Homogeneous.h +501 -0
  226. data/vendor/Eigen/src/Geometry/Hyperplane.h +282 -0
  227. data/vendor/Eigen/src/Geometry/OrthoMethods.h +235 -0
  228. data/vendor/Eigen/src/Geometry/ParametrizedLine.h +232 -0
  229. data/vendor/Eigen/src/Geometry/Quaternion.h +870 -0
  230. data/vendor/Eigen/src/Geometry/Rotation2D.h +199 -0
  231. data/vendor/Eigen/src/Geometry/RotationBase.h +206 -0
  232. data/vendor/Eigen/src/Geometry/Scaling.h +188 -0
  233. data/vendor/Eigen/src/Geometry/Transform.h +1563 -0
  234. data/vendor/Eigen/src/Geometry/Translation.h +202 -0
  235. data/vendor/Eigen/src/Geometry/Umeyama.h +166 -0
  236. data/vendor/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  237. data/vendor/Eigen/src/Householder/BlockHouseholder.h +110 -0
  238. data/vendor/Eigen/src/Householder/Householder.h +176 -0
  239. data/vendor/Eigen/src/Householder/HouseholderSequence.h +545 -0
  240. data/vendor/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +226 -0
  241. data/vendor/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +212 -0
  242. data/vendor/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +229 -0
  243. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +394 -0
  244. data/vendor/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +453 -0
  245. data/vendor/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +444 -0
  246. data/vendor/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +198 -0
  247. data/vendor/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +117 -0
  248. data/vendor/Eigen/src/Jacobi/Jacobi.h +483 -0
  249. data/vendor/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  250. data/vendor/Eigen/src/LU/Determinant.h +117 -0
  251. data/vendor/Eigen/src/LU/FullPivLU.h +877 -0
  252. data/vendor/Eigen/src/LU/InverseImpl.h +432 -0
  253. data/vendor/Eigen/src/LU/PartialPivLU.h +624 -0
  254. data/vendor/Eigen/src/LU/PartialPivLU_LAPACKE.h +83 -0
  255. data/vendor/Eigen/src/LU/arch/InverseSize4.h +351 -0
  256. data/vendor/Eigen/src/MetisSupport/MetisSupport.h +137 -0
  257. data/vendor/Eigen/src/OrderingMethods/Amd.h +435 -0
  258. data/vendor/Eigen/src/OrderingMethods/Eigen_Colamd.h +1863 -0
  259. data/vendor/Eigen/src/OrderingMethods/Ordering.h +153 -0
  260. data/vendor/Eigen/src/PaStiXSupport/PaStiXSupport.h +678 -0
  261. data/vendor/Eigen/src/PardisoSupport/PardisoSupport.h +545 -0
  262. data/vendor/Eigen/src/QR/ColPivHouseholderQR.h +674 -0
  263. data/vendor/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +97 -0
  264. data/vendor/Eigen/src/QR/CompleteOrthogonalDecomposition.h +635 -0
  265. data/vendor/Eigen/src/QR/FullPivHouseholderQR.h +713 -0
  266. data/vendor/Eigen/src/QR/HouseholderQR.h +434 -0
  267. data/vendor/Eigen/src/QR/HouseholderQR_LAPACKE.h +68 -0
  268. data/vendor/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +335 -0
  269. data/vendor/Eigen/src/SVD/BDCSVD.h +1366 -0
  270. data/vendor/Eigen/src/SVD/JacobiSVD.h +812 -0
  271. data/vendor/Eigen/src/SVD/JacobiSVD_LAPACKE.h +91 -0
  272. data/vendor/Eigen/src/SVD/SVDBase.h +376 -0
  273. data/vendor/Eigen/src/SVD/UpperBidiagonalization.h +414 -0
  274. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky.h +697 -0
  275. data/vendor/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +174 -0
  276. data/vendor/Eigen/src/SparseCore/AmbiVector.h +378 -0
  277. data/vendor/Eigen/src/SparseCore/CompressedStorage.h +274 -0
  278. data/vendor/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +352 -0
  279. data/vendor/Eigen/src/SparseCore/MappedSparseMatrix.h +67 -0
  280. data/vendor/Eigen/src/SparseCore/SparseAssign.h +270 -0
  281. data/vendor/Eigen/src/SparseCore/SparseBlock.h +571 -0
  282. data/vendor/Eigen/src/SparseCore/SparseColEtree.h +206 -0
  283. data/vendor/Eigen/src/SparseCore/SparseCompressedBase.h +370 -0
  284. data/vendor/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +722 -0
  285. data/vendor/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +150 -0
  286. data/vendor/Eigen/src/SparseCore/SparseDenseProduct.h +342 -0
  287. data/vendor/Eigen/src/SparseCore/SparseDiagonalProduct.h +138 -0
  288. data/vendor/Eigen/src/SparseCore/SparseDot.h +98 -0
  289. data/vendor/Eigen/src/SparseCore/SparseFuzzy.h +29 -0
  290. data/vendor/Eigen/src/SparseCore/SparseMap.h +305 -0
  291. data/vendor/Eigen/src/SparseCore/SparseMatrix.h +1518 -0
  292. data/vendor/Eigen/src/SparseCore/SparseMatrixBase.h +398 -0
  293. data/vendor/Eigen/src/SparseCore/SparsePermutation.h +178 -0
  294. data/vendor/Eigen/src/SparseCore/SparseProduct.h +181 -0
  295. data/vendor/Eigen/src/SparseCore/SparseRedux.h +49 -0
  296. data/vendor/Eigen/src/SparseCore/SparseRef.h +397 -0
  297. data/vendor/Eigen/src/SparseCore/SparseSelfAdjointView.h +659 -0
  298. data/vendor/Eigen/src/SparseCore/SparseSolverBase.h +124 -0
  299. data/vendor/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +198 -0
  300. data/vendor/Eigen/src/SparseCore/SparseTranspose.h +92 -0
  301. data/vendor/Eigen/src/SparseCore/SparseTriangularView.h +189 -0
  302. data/vendor/Eigen/src/SparseCore/SparseUtil.h +186 -0
  303. data/vendor/Eigen/src/SparseCore/SparseVector.h +478 -0
  304. data/vendor/Eigen/src/SparseCore/SparseView.h +254 -0
  305. data/vendor/Eigen/src/SparseCore/TriangularSolver.h +315 -0
  306. data/vendor/Eigen/src/SparseLU/SparseLU.h +923 -0
  307. data/vendor/Eigen/src/SparseLU/SparseLUImpl.h +66 -0
  308. data/vendor/Eigen/src/SparseLU/SparseLU_Memory.h +226 -0
  309. data/vendor/Eigen/src/SparseLU/SparseLU_Structs.h +110 -0
  310. data/vendor/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +375 -0
  311. data/vendor/Eigen/src/SparseLU/SparseLU_Utils.h +80 -0
  312. data/vendor/Eigen/src/SparseLU/SparseLU_column_bmod.h +181 -0
  313. data/vendor/Eigen/src/SparseLU/SparseLU_column_dfs.h +179 -0
  314. data/vendor/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +107 -0
  315. data/vendor/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +280 -0
  316. data/vendor/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +126 -0
  317. data/vendor/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +130 -0
  318. data/vendor/Eigen/src/SparseLU/SparseLU_panel_bmod.h +223 -0
  319. data/vendor/Eigen/src/SparseLU/SparseLU_panel_dfs.h +258 -0
  320. data/vendor/Eigen/src/SparseLU/SparseLU_pivotL.h +137 -0
  321. data/vendor/Eigen/src/SparseLU/SparseLU_pruneL.h +136 -0
  322. data/vendor/Eigen/src/SparseLU/SparseLU_relax_snode.h +83 -0
  323. data/vendor/Eigen/src/SparseQR/SparseQR.h +758 -0
  324. data/vendor/Eigen/src/StlSupport/StdDeque.h +116 -0
  325. data/vendor/Eigen/src/StlSupport/StdList.h +106 -0
  326. data/vendor/Eigen/src/StlSupport/StdVector.h +131 -0
  327. data/vendor/Eigen/src/StlSupport/details.h +84 -0
  328. data/vendor/Eigen/src/SuperLUSupport/SuperLUSupport.h +1025 -0
  329. data/vendor/Eigen/src/UmfPackSupport/UmfPackSupport.h +642 -0
  330. data/vendor/Eigen/src/misc/Image.h +82 -0
  331. data/vendor/Eigen/src/misc/Kernel.h +79 -0
  332. data/vendor/Eigen/src/misc/RealSvd2x2.h +55 -0
  333. data/vendor/Eigen/src/misc/blas.h +440 -0
  334. data/vendor/Eigen/src/misc/lapack.h +152 -0
  335. data/vendor/Eigen/src/misc/lapacke.h +16292 -0
  336. data/vendor/Eigen/src/misc/lapacke_mangling.h +17 -0
  337. data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h +358 -0
  338. data/vendor/Eigen/src/plugins/ArrayCwiseUnaryOps.h +696 -0
  339. data/vendor/Eigen/src/plugins/BlockMethods.h +1442 -0
  340. data/vendor/Eigen/src/plugins/CommonCwiseBinaryOps.h +115 -0
  341. data/vendor/Eigen/src/plugins/CommonCwiseUnaryOps.h +177 -0
  342. data/vendor/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  343. data/vendor/Eigen/src/plugins/MatrixCwiseBinaryOps.h +152 -0
  344. data/vendor/Eigen/src/plugins/MatrixCwiseUnaryOps.h +95 -0
  345. data/vendor/Eigen/src/plugins/ReshapedMethods.h +149 -0
  346. data/vendor/aarand/aarand.hpp +114 -0
  347. data/vendor/annoy/annoylib.h +1495 -0
  348. data/vendor/annoy/kissrandom.h +120 -0
  349. data/vendor/annoy/mman.h +242 -0
  350. data/vendor/hnswlib/bruteforce.h +152 -0
  351. data/vendor/hnswlib/hnswalg.h +1192 -0
  352. data/vendor/hnswlib/hnswlib.h +108 -0
  353. data/vendor/hnswlib/space_ip.h +282 -0
  354. data/vendor/hnswlib/space_l2.h +281 -0
  355. data/vendor/hnswlib/visited_list_pool.h +79 -0
  356. data/vendor/irlba/irlba.hpp +575 -0
  357. data/vendor/irlba/lanczos.hpp +212 -0
  358. data/vendor/irlba/parallel.hpp +474 -0
  359. data/vendor/irlba/utils.hpp +224 -0
  360. data/vendor/irlba/wrappers.hpp +228 -0
  361. data/vendor/kmeans/Base.hpp +75 -0
  362. data/vendor/kmeans/Details.hpp +79 -0
  363. data/vendor/kmeans/HartiganWong.hpp +492 -0
  364. data/vendor/kmeans/InitializeKmeansPP.hpp +144 -0
  365. data/vendor/kmeans/InitializeNone.hpp +44 -0
  366. data/vendor/kmeans/InitializePCAPartition.hpp +309 -0
  367. data/vendor/kmeans/InitializeRandom.hpp +91 -0
  368. data/vendor/kmeans/Kmeans.hpp +161 -0
  369. data/vendor/kmeans/Lloyd.hpp +134 -0
  370. data/vendor/kmeans/MiniBatch.hpp +269 -0
  371. data/vendor/kmeans/QuickSearch.hpp +179 -0
  372. data/vendor/kmeans/compute_centroids.hpp +32 -0
  373. data/vendor/kmeans/compute_wcss.hpp +27 -0
  374. data/vendor/kmeans/is_edge_case.hpp +42 -0
  375. data/vendor/kmeans/random.hpp +55 -0
  376. data/vendor/knncolle/Annoy/Annoy.hpp +193 -0
  377. data/vendor/knncolle/BruteForce/BruteForce.hpp +120 -0
  378. data/vendor/knncolle/Hnsw/Hnsw.hpp +225 -0
  379. data/vendor/knncolle/Kmknn/Kmknn.hpp +286 -0
  380. data/vendor/knncolle/VpTree/VpTree.hpp +256 -0
  381. data/vendor/knncolle/knncolle.hpp +34 -0
  382. data/vendor/knncolle/utils/Base.hpp +100 -0
  383. data/vendor/knncolle/utils/NeighborQueue.hpp +94 -0
  384. data/vendor/knncolle/utils/distances.hpp +98 -0
  385. data/vendor/knncolle/utils/find_nearest_neighbors.hpp +112 -0
  386. data/vendor/powerit/PowerIterations.hpp +157 -0
  387. data/vendor/umappp/NeighborList.hpp +37 -0
  388. data/vendor/umappp/Umap.hpp +662 -0
  389. data/vendor/umappp/combine_neighbor_sets.hpp +95 -0
  390. data/vendor/umappp/find_ab.hpp +157 -0
  391. data/vendor/umappp/neighbor_similarities.hpp +136 -0
  392. data/vendor/umappp/optimize_layout.hpp +285 -0
  393. data/vendor/umappp/spectral_init.hpp +181 -0
  394. data/vendor/umappp/umappp.hpp +13 -0
  395. metadata +465 -0
@@ -0,0 +1,674 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008-2009 Gael Guennebaud <gael.guennebaud@inria.fr>
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+ // Copyright (C) 2009 Benoit Jacob <jacob.benoit.1@gmail.com>
6
+ //
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+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_COLPIVOTINGHOUSEHOLDERQR_H
12
+ #define EIGEN_COLPIVOTINGHOUSEHOLDERQR_H
13
+
14
+ namespace Eigen {
15
+
16
+ namespace internal {
17
+ template<typename _MatrixType> struct traits<ColPivHouseholderQR<_MatrixType> >
18
+ : traits<_MatrixType>
19
+ {
20
+ typedef MatrixXpr XprKind;
21
+ typedef SolverStorage StorageKind;
22
+ typedef int StorageIndex;
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+ enum { Flags = 0 };
24
+ };
25
+
26
+ } // end namespace internal
27
+
28
+ /** \ingroup QR_Module
29
+ *
30
+ * \class ColPivHouseholderQR
31
+ *
32
+ * \brief Householder rank-revealing QR decomposition of a matrix with column-pivoting
33
+ *
34
+ * \tparam _MatrixType the type of the matrix of which we are computing the QR decomposition
35
+ *
36
+ * This class performs a rank-revealing QR decomposition of a matrix \b A into matrices \b P, \b Q and \b R
37
+ * such that
38
+ * \f[
39
+ * \mathbf{A} \, \mathbf{P} = \mathbf{Q} \, \mathbf{R}
40
+ * \f]
41
+ * by using Householder transformations. Here, \b P is a permutation matrix, \b Q a unitary matrix and \b R an
42
+ * upper triangular matrix.
43
+ *
44
+ * This decomposition performs column pivoting in order to be rank-revealing and improve
45
+ * numerical stability. It is slower than HouseholderQR, and faster than FullPivHouseholderQR.
46
+ *
47
+ * This class supports the \link InplaceDecomposition inplace decomposition \endlink mechanism.
48
+ *
49
+ * \sa MatrixBase::colPivHouseholderQr()
50
+ */
51
+ template<typename _MatrixType> class ColPivHouseholderQR
52
+ : public SolverBase<ColPivHouseholderQR<_MatrixType> >
53
+ {
54
+ public:
55
+
56
+ typedef _MatrixType MatrixType;
57
+ typedef SolverBase<ColPivHouseholderQR> Base;
58
+ friend class SolverBase<ColPivHouseholderQR>;
59
+
60
+ EIGEN_GENERIC_PUBLIC_INTERFACE(ColPivHouseholderQR)
61
+ enum {
62
+ MaxRowsAtCompileTime = MatrixType::MaxRowsAtCompileTime,
63
+ MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime
64
+ };
65
+ typedef typename internal::plain_diag_type<MatrixType>::type HCoeffsType;
66
+ typedef PermutationMatrix<ColsAtCompileTime, MaxColsAtCompileTime> PermutationType;
67
+ typedef typename internal::plain_row_type<MatrixType, Index>::type IntRowVectorType;
68
+ typedef typename internal::plain_row_type<MatrixType>::type RowVectorType;
69
+ typedef typename internal::plain_row_type<MatrixType, RealScalar>::type RealRowVectorType;
70
+ typedef HouseholderSequence<MatrixType,typename internal::remove_all<typename HCoeffsType::ConjugateReturnType>::type> HouseholderSequenceType;
71
+ typedef typename MatrixType::PlainObject PlainObject;
72
+
73
+ private:
74
+
75
+ typedef typename PermutationType::StorageIndex PermIndexType;
76
+
77
+ public:
78
+
79
+ /**
80
+ * \brief Default Constructor.
81
+ *
82
+ * The default constructor is useful in cases in which the user intends to
83
+ * perform decompositions via ColPivHouseholderQR::compute(const MatrixType&).
84
+ */
85
+ ColPivHouseholderQR()
86
+ : m_qr(),
87
+ m_hCoeffs(),
88
+ m_colsPermutation(),
89
+ m_colsTranspositions(),
90
+ m_temp(),
91
+ m_colNormsUpdated(),
92
+ m_colNormsDirect(),
93
+ m_isInitialized(false),
94
+ m_usePrescribedThreshold(false) {}
95
+
96
+ /** \brief Default Constructor with memory preallocation
97
+ *
98
+ * Like the default constructor but with preallocation of the internal data
99
+ * according to the specified problem \a size.
100
+ * \sa ColPivHouseholderQR()
101
+ */
102
+ ColPivHouseholderQR(Index rows, Index cols)
103
+ : m_qr(rows, cols),
104
+ m_hCoeffs((std::min)(rows,cols)),
105
+ m_colsPermutation(PermIndexType(cols)),
106
+ m_colsTranspositions(cols),
107
+ m_temp(cols),
108
+ m_colNormsUpdated(cols),
109
+ m_colNormsDirect(cols),
110
+ m_isInitialized(false),
111
+ m_usePrescribedThreshold(false) {}
112
+
113
+ /** \brief Constructs a QR factorization from a given matrix
114
+ *
115
+ * This constructor computes the QR factorization of the matrix \a matrix by calling
116
+ * the method compute(). It is a short cut for:
117
+ *
118
+ * \code
119
+ * ColPivHouseholderQR<MatrixType> qr(matrix.rows(), matrix.cols());
120
+ * qr.compute(matrix);
121
+ * \endcode
122
+ *
123
+ * \sa compute()
124
+ */
125
+ template<typename InputType>
126
+ explicit ColPivHouseholderQR(const EigenBase<InputType>& matrix)
127
+ : m_qr(matrix.rows(), matrix.cols()),
128
+ m_hCoeffs((std::min)(matrix.rows(),matrix.cols())),
129
+ m_colsPermutation(PermIndexType(matrix.cols())),
130
+ m_colsTranspositions(matrix.cols()),
131
+ m_temp(matrix.cols()),
132
+ m_colNormsUpdated(matrix.cols()),
133
+ m_colNormsDirect(matrix.cols()),
134
+ m_isInitialized(false),
135
+ m_usePrescribedThreshold(false)
136
+ {
137
+ compute(matrix.derived());
138
+ }
139
+
140
+ /** \brief Constructs a QR factorization from a given matrix
141
+ *
142
+ * This overloaded constructor is provided for \link InplaceDecomposition inplace decomposition \endlink when \c MatrixType is a Eigen::Ref.
143
+ *
144
+ * \sa ColPivHouseholderQR(const EigenBase&)
145
+ */
146
+ template<typename InputType>
147
+ explicit ColPivHouseholderQR(EigenBase<InputType>& matrix)
148
+ : m_qr(matrix.derived()),
149
+ m_hCoeffs((std::min)(matrix.rows(),matrix.cols())),
150
+ m_colsPermutation(PermIndexType(matrix.cols())),
151
+ m_colsTranspositions(matrix.cols()),
152
+ m_temp(matrix.cols()),
153
+ m_colNormsUpdated(matrix.cols()),
154
+ m_colNormsDirect(matrix.cols()),
155
+ m_isInitialized(false),
156
+ m_usePrescribedThreshold(false)
157
+ {
158
+ computeInPlace();
159
+ }
160
+
161
+ #ifdef EIGEN_PARSED_BY_DOXYGEN
162
+ /** This method finds a solution x to the equation Ax=b, where A is the matrix of which
163
+ * *this is the QR decomposition, if any exists.
164
+ *
165
+ * \param b the right-hand-side of the equation to solve.
166
+ *
167
+ * \returns a solution.
168
+ *
169
+ * \note_about_checking_solutions
170
+ *
171
+ * \note_about_arbitrary_choice_of_solution
172
+ *
173
+ * Example: \include ColPivHouseholderQR_solve.cpp
174
+ * Output: \verbinclude ColPivHouseholderQR_solve.out
175
+ */
176
+ template<typename Rhs>
177
+ inline const Solve<ColPivHouseholderQR, Rhs>
178
+ solve(const MatrixBase<Rhs>& b) const;
179
+ #endif
180
+
181
+ HouseholderSequenceType householderQ() const;
182
+ HouseholderSequenceType matrixQ() const
183
+ {
184
+ return householderQ();
185
+ }
186
+
187
+ /** \returns a reference to the matrix where the Householder QR decomposition is stored
188
+ */
189
+ const MatrixType& matrixQR() const
190
+ {
191
+ eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
192
+ return m_qr;
193
+ }
194
+
195
+ /** \returns a reference to the matrix where the result Householder QR is stored
196
+ * \warning The strict lower part of this matrix contains internal values.
197
+ * Only the upper triangular part should be referenced. To get it, use
198
+ * \code matrixR().template triangularView<Upper>() \endcode
199
+ * For rank-deficient matrices, use
200
+ * \code
201
+ * matrixR().topLeftCorner(rank(), rank()).template triangularView<Upper>()
202
+ * \endcode
203
+ */
204
+ const MatrixType& matrixR() const
205
+ {
206
+ eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
207
+ return m_qr;
208
+ }
209
+
210
+ template<typename InputType>
211
+ ColPivHouseholderQR& compute(const EigenBase<InputType>& matrix);
212
+
213
+ /** \returns a const reference to the column permutation matrix */
214
+ const PermutationType& colsPermutation() const
215
+ {
216
+ eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
217
+ return m_colsPermutation;
218
+ }
219
+
220
+ /** \returns the absolute value of the determinant of the matrix of which
221
+ * *this is the QR decomposition. It has only linear complexity
222
+ * (that is, O(n) where n is the dimension of the square matrix)
223
+ * as the QR decomposition has already been computed.
224
+ *
225
+ * \note This is only for square matrices.
226
+ *
227
+ * \warning a determinant can be very big or small, so for matrices
228
+ * of large enough dimension, there is a risk of overflow/underflow.
229
+ * One way to work around that is to use logAbsDeterminant() instead.
230
+ *
231
+ * \sa logAbsDeterminant(), MatrixBase::determinant()
232
+ */
233
+ typename MatrixType::RealScalar absDeterminant() const;
234
+
235
+ /** \returns the natural log of the absolute value of the determinant of the matrix of which
236
+ * *this is the QR decomposition. It has only linear complexity
237
+ * (that is, O(n) where n is the dimension of the square matrix)
238
+ * as the QR decomposition has already been computed.
239
+ *
240
+ * \note This is only for square matrices.
241
+ *
242
+ * \note This method is useful to work around the risk of overflow/underflow that's inherent
243
+ * to determinant computation.
244
+ *
245
+ * \sa absDeterminant(), MatrixBase::determinant()
246
+ */
247
+ typename MatrixType::RealScalar logAbsDeterminant() const;
248
+
249
+ /** \returns the rank of the matrix of which *this is the QR decomposition.
250
+ *
251
+ * \note This method has to determine which pivots should be considered nonzero.
252
+ * For that, it uses the threshold value that you can control by calling
253
+ * setThreshold(const RealScalar&).
254
+ */
255
+ inline Index rank() const
256
+ {
257
+ using std::abs;
258
+ eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
259
+ RealScalar premultiplied_threshold = abs(m_maxpivot) * threshold();
260
+ Index result = 0;
261
+ for(Index i = 0; i < m_nonzero_pivots; ++i)
262
+ result += (abs(m_qr.coeff(i,i)) > premultiplied_threshold);
263
+ return result;
264
+ }
265
+
266
+ /** \returns the dimension of the kernel of the matrix of which *this is the QR decomposition.
267
+ *
268
+ * \note This method has to determine which pivots should be considered nonzero.
269
+ * For that, it uses the threshold value that you can control by calling
270
+ * setThreshold(const RealScalar&).
271
+ */
272
+ inline Index dimensionOfKernel() const
273
+ {
274
+ eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
275
+ return cols() - rank();
276
+ }
277
+
278
+ /** \returns true if the matrix of which *this is the QR decomposition represents an injective
279
+ * linear map, i.e. has trivial kernel; false otherwise.
280
+ *
281
+ * \note This method has to determine which pivots should be considered nonzero.
282
+ * For that, it uses the threshold value that you can control by calling
283
+ * setThreshold(const RealScalar&).
284
+ */
285
+ inline bool isInjective() const
286
+ {
287
+ eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
288
+ return rank() == cols();
289
+ }
290
+
291
+ /** \returns true if the matrix of which *this is the QR decomposition represents a surjective
292
+ * linear map; false otherwise.
293
+ *
294
+ * \note This method has to determine which pivots should be considered nonzero.
295
+ * For that, it uses the threshold value that you can control by calling
296
+ * setThreshold(const RealScalar&).
297
+ */
298
+ inline bool isSurjective() const
299
+ {
300
+ eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
301
+ return rank() == rows();
302
+ }
303
+
304
+ /** \returns true if the matrix of which *this is the QR decomposition is invertible.
305
+ *
306
+ * \note This method has to determine which pivots should be considered nonzero.
307
+ * For that, it uses the threshold value that you can control by calling
308
+ * setThreshold(const RealScalar&).
309
+ */
310
+ inline bool isInvertible() const
311
+ {
312
+ eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
313
+ return isInjective() && isSurjective();
314
+ }
315
+
316
+ /** \returns the inverse of the matrix of which *this is the QR decomposition.
317
+ *
318
+ * \note If this matrix is not invertible, the returned matrix has undefined coefficients.
319
+ * Use isInvertible() to first determine whether this matrix is invertible.
320
+ */
321
+ inline const Inverse<ColPivHouseholderQR> inverse() const
322
+ {
323
+ eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
324
+ return Inverse<ColPivHouseholderQR>(*this);
325
+ }
326
+
327
+ inline Index rows() const { return m_qr.rows(); }
328
+ inline Index cols() const { return m_qr.cols(); }
329
+
330
+ /** \returns a const reference to the vector of Householder coefficients used to represent the factor \c Q.
331
+ *
332
+ * For advanced uses only.
333
+ */
334
+ const HCoeffsType& hCoeffs() const { return m_hCoeffs; }
335
+
336
+ /** Allows to prescribe a threshold to be used by certain methods, such as rank(),
337
+ * who need to determine when pivots are to be considered nonzero. This is not used for the
338
+ * QR decomposition itself.
339
+ *
340
+ * When it needs to get the threshold value, Eigen calls threshold(). By default, this
341
+ * uses a formula to automatically determine a reasonable threshold.
342
+ * Once you have called the present method setThreshold(const RealScalar&),
343
+ * your value is used instead.
344
+ *
345
+ * \param threshold The new value to use as the threshold.
346
+ *
347
+ * A pivot will be considered nonzero if its absolute value is strictly greater than
348
+ * \f$ \vert pivot \vert \leqslant threshold \times \vert maxpivot \vert \f$
349
+ * where maxpivot is the biggest pivot.
350
+ *
351
+ * If you want to come back to the default behavior, call setThreshold(Default_t)
352
+ */
353
+ ColPivHouseholderQR& setThreshold(const RealScalar& threshold)
354
+ {
355
+ m_usePrescribedThreshold = true;
356
+ m_prescribedThreshold = threshold;
357
+ return *this;
358
+ }
359
+
360
+ /** Allows to come back to the default behavior, letting Eigen use its default formula for
361
+ * determining the threshold.
362
+ *
363
+ * You should pass the special object Eigen::Default as parameter here.
364
+ * \code qr.setThreshold(Eigen::Default); \endcode
365
+ *
366
+ * See the documentation of setThreshold(const RealScalar&).
367
+ */
368
+ ColPivHouseholderQR& setThreshold(Default_t)
369
+ {
370
+ m_usePrescribedThreshold = false;
371
+ return *this;
372
+ }
373
+
374
+ /** Returns the threshold that will be used by certain methods such as rank().
375
+ *
376
+ * See the documentation of setThreshold(const RealScalar&).
377
+ */
378
+ RealScalar threshold() const
379
+ {
380
+ eigen_assert(m_isInitialized || m_usePrescribedThreshold);
381
+ return m_usePrescribedThreshold ? m_prescribedThreshold
382
+ // this formula comes from experimenting (see "LU precision tuning" thread on the list)
383
+ // and turns out to be identical to Higham's formula used already in LDLt.
384
+ : NumTraits<Scalar>::epsilon() * RealScalar(m_qr.diagonalSize());
385
+ }
386
+
387
+ /** \returns the number of nonzero pivots in the QR decomposition.
388
+ * Here nonzero is meant in the exact sense, not in a fuzzy sense.
389
+ * So that notion isn't really intrinsically interesting, but it is
390
+ * still useful when implementing algorithms.
391
+ *
392
+ * \sa rank()
393
+ */
394
+ inline Index nonzeroPivots() const
395
+ {
396
+ eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
397
+ return m_nonzero_pivots;
398
+ }
399
+
400
+ /** \returns the absolute value of the biggest pivot, i.e. the biggest
401
+ * diagonal coefficient of R.
402
+ */
403
+ RealScalar maxPivot() const { return m_maxpivot; }
404
+
405
+ /** \brief Reports whether the QR factorization was successful.
406
+ *
407
+ * \note This function always returns \c Success. It is provided for compatibility
408
+ * with other factorization routines.
409
+ * \returns \c Success
410
+ */
411
+ ComputationInfo info() const
412
+ {
413
+ eigen_assert(m_isInitialized && "Decomposition is not initialized.");
414
+ return Success;
415
+ }
416
+
417
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
418
+ template<typename RhsType, typename DstType>
419
+ void _solve_impl(const RhsType &rhs, DstType &dst) const;
420
+
421
+ template<bool Conjugate, typename RhsType, typename DstType>
422
+ void _solve_impl_transposed(const RhsType &rhs, DstType &dst) const;
423
+ #endif
424
+
425
+ protected:
426
+
427
+ friend class CompleteOrthogonalDecomposition<MatrixType>;
428
+
429
+ static void check_template_parameters()
430
+ {
431
+ EIGEN_STATIC_ASSERT_NON_INTEGER(Scalar);
432
+ }
433
+
434
+ void computeInPlace();
435
+
436
+ MatrixType m_qr;
437
+ HCoeffsType m_hCoeffs;
438
+ PermutationType m_colsPermutation;
439
+ IntRowVectorType m_colsTranspositions;
440
+ RowVectorType m_temp;
441
+ RealRowVectorType m_colNormsUpdated;
442
+ RealRowVectorType m_colNormsDirect;
443
+ bool m_isInitialized, m_usePrescribedThreshold;
444
+ RealScalar m_prescribedThreshold, m_maxpivot;
445
+ Index m_nonzero_pivots;
446
+ Index m_det_pq;
447
+ };
448
+
449
+ template<typename MatrixType>
450
+ typename MatrixType::RealScalar ColPivHouseholderQR<MatrixType>::absDeterminant() const
451
+ {
452
+ using std::abs;
453
+ eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
454
+ eigen_assert(m_qr.rows() == m_qr.cols() && "You can't take the determinant of a non-square matrix!");
455
+ return abs(m_qr.diagonal().prod());
456
+ }
457
+
458
+ template<typename MatrixType>
459
+ typename MatrixType::RealScalar ColPivHouseholderQR<MatrixType>::logAbsDeterminant() const
460
+ {
461
+ eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
462
+ eigen_assert(m_qr.rows() == m_qr.cols() && "You can't take the determinant of a non-square matrix!");
463
+ return m_qr.diagonal().cwiseAbs().array().log().sum();
464
+ }
465
+
466
+ /** Performs the QR factorization of the given matrix \a matrix. The result of
467
+ * the factorization is stored into \c *this, and a reference to \c *this
468
+ * is returned.
469
+ *
470
+ * \sa class ColPivHouseholderQR, ColPivHouseholderQR(const MatrixType&)
471
+ */
472
+ template<typename MatrixType>
473
+ template<typename InputType>
474
+ ColPivHouseholderQR<MatrixType>& ColPivHouseholderQR<MatrixType>::compute(const EigenBase<InputType>& matrix)
475
+ {
476
+ m_qr = matrix.derived();
477
+ computeInPlace();
478
+ return *this;
479
+ }
480
+
481
+ template<typename MatrixType>
482
+ void ColPivHouseholderQR<MatrixType>::computeInPlace()
483
+ {
484
+ check_template_parameters();
485
+
486
+ // the column permutation is stored as int indices, so just to be sure:
487
+ eigen_assert(m_qr.cols()<=NumTraits<int>::highest());
488
+
489
+ using std::abs;
490
+
491
+ Index rows = m_qr.rows();
492
+ Index cols = m_qr.cols();
493
+ Index size = m_qr.diagonalSize();
494
+
495
+ m_hCoeffs.resize(size);
496
+
497
+ m_temp.resize(cols);
498
+
499
+ m_colsTranspositions.resize(m_qr.cols());
500
+ Index number_of_transpositions = 0;
501
+
502
+ m_colNormsUpdated.resize(cols);
503
+ m_colNormsDirect.resize(cols);
504
+ for (Index k = 0; k < cols; ++k) {
505
+ // colNormsDirect(k) caches the most recent directly computed norm of
506
+ // column k.
507
+ m_colNormsDirect.coeffRef(k) = m_qr.col(k).norm();
508
+ m_colNormsUpdated.coeffRef(k) = m_colNormsDirect.coeffRef(k);
509
+ }
510
+
511
+ RealScalar threshold_helper = numext::abs2<RealScalar>(m_colNormsUpdated.maxCoeff() * NumTraits<RealScalar>::epsilon()) / RealScalar(rows);
512
+ RealScalar norm_downdate_threshold = numext::sqrt(NumTraits<RealScalar>::epsilon());
513
+
514
+ m_nonzero_pivots = size; // the generic case is that in which all pivots are nonzero (invertible case)
515
+ m_maxpivot = RealScalar(0);
516
+
517
+ for(Index k = 0; k < size; ++k)
518
+ {
519
+ // first, we look up in our table m_colNormsUpdated which column has the biggest norm
520
+ Index biggest_col_index;
521
+ RealScalar biggest_col_sq_norm = numext::abs2(m_colNormsUpdated.tail(cols-k).maxCoeff(&biggest_col_index));
522
+ biggest_col_index += k;
523
+
524
+ // Track the number of meaningful pivots but do not stop the decomposition to make
525
+ // sure that the initial matrix is properly reproduced. See bug 941.
526
+ if(m_nonzero_pivots==size && biggest_col_sq_norm < threshold_helper * RealScalar(rows-k))
527
+ m_nonzero_pivots = k;
528
+
529
+ // apply the transposition to the columns
530
+ m_colsTranspositions.coeffRef(k) = biggest_col_index;
531
+ if(k != biggest_col_index) {
532
+ m_qr.col(k).swap(m_qr.col(biggest_col_index));
533
+ std::swap(m_colNormsUpdated.coeffRef(k), m_colNormsUpdated.coeffRef(biggest_col_index));
534
+ std::swap(m_colNormsDirect.coeffRef(k), m_colNormsDirect.coeffRef(biggest_col_index));
535
+ ++number_of_transpositions;
536
+ }
537
+
538
+ // generate the householder vector, store it below the diagonal
539
+ RealScalar beta;
540
+ m_qr.col(k).tail(rows-k).makeHouseholderInPlace(m_hCoeffs.coeffRef(k), beta);
541
+
542
+ // apply the householder transformation to the diagonal coefficient
543
+ m_qr.coeffRef(k,k) = beta;
544
+
545
+ // remember the maximum absolute value of diagonal coefficients
546
+ if(abs(beta) > m_maxpivot) m_maxpivot = abs(beta);
547
+
548
+ // apply the householder transformation
549
+ m_qr.bottomRightCorner(rows-k, cols-k-1)
550
+ .applyHouseholderOnTheLeft(m_qr.col(k).tail(rows-k-1), m_hCoeffs.coeffRef(k), &m_temp.coeffRef(k+1));
551
+
552
+ // update our table of norms of the columns
553
+ for (Index j = k + 1; j < cols; ++j) {
554
+ // The following implements the stable norm downgrade step discussed in
555
+ // http://www.netlib.org/lapack/lawnspdf/lawn176.pdf
556
+ // and used in LAPACK routines xGEQPF and xGEQP3.
557
+ // See lines 278-297 in http://www.netlib.org/lapack/explore-html/dc/df4/sgeqpf_8f_source.html
558
+ if (m_colNormsUpdated.coeffRef(j) != RealScalar(0)) {
559
+ RealScalar temp = abs(m_qr.coeffRef(k, j)) / m_colNormsUpdated.coeffRef(j);
560
+ temp = (RealScalar(1) + temp) * (RealScalar(1) - temp);
561
+ temp = temp < RealScalar(0) ? RealScalar(0) : temp;
562
+ RealScalar temp2 = temp * numext::abs2<RealScalar>(m_colNormsUpdated.coeffRef(j) /
563
+ m_colNormsDirect.coeffRef(j));
564
+ if (temp2 <= norm_downdate_threshold) {
565
+ // The updated norm has become too inaccurate so re-compute the column
566
+ // norm directly.
567
+ m_colNormsDirect.coeffRef(j) = m_qr.col(j).tail(rows - k - 1).norm();
568
+ m_colNormsUpdated.coeffRef(j) = m_colNormsDirect.coeffRef(j);
569
+ } else {
570
+ m_colNormsUpdated.coeffRef(j) *= numext::sqrt(temp);
571
+ }
572
+ }
573
+ }
574
+ }
575
+
576
+ m_colsPermutation.setIdentity(PermIndexType(cols));
577
+ for(PermIndexType k = 0; k < size/*m_nonzero_pivots*/; ++k)
578
+ m_colsPermutation.applyTranspositionOnTheRight(k, PermIndexType(m_colsTranspositions.coeff(k)));
579
+
580
+ m_det_pq = (number_of_transpositions%2) ? -1 : 1;
581
+ m_isInitialized = true;
582
+ }
583
+
584
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
585
+ template<typename _MatrixType>
586
+ template<typename RhsType, typename DstType>
587
+ void ColPivHouseholderQR<_MatrixType>::_solve_impl(const RhsType &rhs, DstType &dst) const
588
+ {
589
+ const Index nonzero_pivots = nonzeroPivots();
590
+
591
+ if(nonzero_pivots == 0)
592
+ {
593
+ dst.setZero();
594
+ return;
595
+ }
596
+
597
+ typename RhsType::PlainObject c(rhs);
598
+
599
+ c.applyOnTheLeft(householderQ().setLength(nonzero_pivots).adjoint() );
600
+
601
+ m_qr.topLeftCorner(nonzero_pivots, nonzero_pivots)
602
+ .template triangularView<Upper>()
603
+ .solveInPlace(c.topRows(nonzero_pivots));
604
+
605
+ for(Index i = 0; i < nonzero_pivots; ++i) dst.row(m_colsPermutation.indices().coeff(i)) = c.row(i);
606
+ for(Index i = nonzero_pivots; i < cols(); ++i) dst.row(m_colsPermutation.indices().coeff(i)).setZero();
607
+ }
608
+
609
+ template<typename _MatrixType>
610
+ template<bool Conjugate, typename RhsType, typename DstType>
611
+ void ColPivHouseholderQR<_MatrixType>::_solve_impl_transposed(const RhsType &rhs, DstType &dst) const
612
+ {
613
+ const Index nonzero_pivots = nonzeroPivots();
614
+
615
+ if(nonzero_pivots == 0)
616
+ {
617
+ dst.setZero();
618
+ return;
619
+ }
620
+
621
+ typename RhsType::PlainObject c(m_colsPermutation.transpose()*rhs);
622
+
623
+ m_qr.topLeftCorner(nonzero_pivots, nonzero_pivots)
624
+ .template triangularView<Upper>()
625
+ .transpose().template conjugateIf<Conjugate>()
626
+ .solveInPlace(c.topRows(nonzero_pivots));
627
+
628
+ dst.topRows(nonzero_pivots) = c.topRows(nonzero_pivots);
629
+ dst.bottomRows(rows()-nonzero_pivots).setZero();
630
+
631
+ dst.applyOnTheLeft(householderQ().setLength(nonzero_pivots).template conjugateIf<!Conjugate>() );
632
+ }
633
+ #endif
634
+
635
+ namespace internal {
636
+
637
+ template<typename DstXprType, typename MatrixType>
638
+ struct Assignment<DstXprType, Inverse<ColPivHouseholderQR<MatrixType> >, internal::assign_op<typename DstXprType::Scalar,typename ColPivHouseholderQR<MatrixType>::Scalar>, Dense2Dense>
639
+ {
640
+ typedef ColPivHouseholderQR<MatrixType> QrType;
641
+ typedef Inverse<QrType> SrcXprType;
642
+ static void run(DstXprType &dst, const SrcXprType &src, const internal::assign_op<typename DstXprType::Scalar,typename QrType::Scalar> &)
643
+ {
644
+ dst = src.nestedExpression().solve(MatrixType::Identity(src.rows(), src.cols()));
645
+ }
646
+ };
647
+
648
+ } // end namespace internal
649
+
650
+ /** \returns the matrix Q as a sequence of householder transformations.
651
+ * You can extract the meaningful part only by using:
652
+ * \code qr.householderQ().setLength(qr.nonzeroPivots()) \endcode*/
653
+ template<typename MatrixType>
654
+ typename ColPivHouseholderQR<MatrixType>::HouseholderSequenceType ColPivHouseholderQR<MatrixType>
655
+ ::householderQ() const
656
+ {
657
+ eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
658
+ return HouseholderSequenceType(m_qr, m_hCoeffs.conjugate());
659
+ }
660
+
661
+ /** \return the column-pivoting Householder QR decomposition of \c *this.
662
+ *
663
+ * \sa class ColPivHouseholderQR
664
+ */
665
+ template<typename Derived>
666
+ const ColPivHouseholderQR<typename MatrixBase<Derived>::PlainObject>
667
+ MatrixBase<Derived>::colPivHouseholderQr() const
668
+ {
669
+ return ColPivHouseholderQR<PlainObject>(eval());
670
+ }
671
+
672
+ } // end namespace Eigen
673
+
674
+ #endif // EIGEN_COLPIVOTINGHOUSEHOLDERQR_H