umappp 0.1.2

data/vendor/Eigen/src/misc/lapacke_mangling.h

@@ -0,0 +1,17 @@
+#ifndef LAPACK_HEADER_INCLUDED
+#define LAPACK_HEADER_INCLUDED
+
+#ifndef LAPACK_GLOBAL
+#if defined(LAPACK_GLOBAL_PATTERN_LC) || defined(ADD_)
+#define LAPACK_GLOBAL(lcname,UCNAME)  lcname##_
+#elif defined(LAPACK_GLOBAL_PATTERN_UC) || defined(UPPER)
+#define LAPACK_GLOBAL(lcname,UCNAME)  UCNAME
+#elif defined(LAPACK_GLOBAL_PATTERN_MC) || defined(NOCHANGE)
+#define LAPACK_GLOBAL(lcname,UCNAME)  lcname
+#else
+#define LAPACK_GLOBAL(lcname,UCNAME)  lcname##_
+#endif
+#endif
+
+#endif
+

data/vendor/Eigen/src/plugins/ArrayCwiseBinaryOps.h

@@ -0,0 +1,358 @@
+
+/** \returns an expression of the coefficient wise product of \c *this and \a other
+  *
+  * \sa MatrixBase::cwiseProduct
+  */
+template<typename OtherDerived>
+EIGEN_DEVICE_FUNC
+EIGEN_STRONG_INLINE const EIGEN_CWISE_BINARY_RETURN_TYPE(Derived,OtherDerived,product)
+operator*(const EIGEN_CURRENT_STORAGE_BASE_CLASS<OtherDerived> &other) const
+{
+  return EIGEN_CWISE_BINARY_RETURN_TYPE(Derived,OtherDerived,product)(derived(), other.derived());
+}
+
+/** \returns an expression of the coefficient wise quotient of \c *this and \a other
+  *
+  * \sa MatrixBase::cwiseQuotient
+  */
+template<typename OtherDerived>
+EIGEN_DEVICE_FUNC
+EIGEN_STRONG_INLINE const CwiseBinaryOp<internal::scalar_quotient_op<Scalar,typename OtherDerived::Scalar>, const Derived, const OtherDerived>
+operator/(const EIGEN_CURRENT_STORAGE_BASE_CLASS<OtherDerived> &other) const
+{
+  return CwiseBinaryOp<internal::scalar_quotient_op<Scalar,typename OtherDerived::Scalar>, const Derived, const OtherDerived>(derived(), other.derived());
+}
+
+/** \returns an expression of the coefficient-wise min of \c *this and \a other
+  *
+  * Example: \include Cwise_min.cpp
+  * Output: \verbinclude Cwise_min.out
+  *
+  * \sa max()
+  */
+EIGEN_MAKE_CWISE_BINARY_OP(min,min)
+
+/** \returns an expression of the coefficient-wise min of \c *this and scalar \a other
+  *
+  * \sa max()
+  */
+EIGEN_DEVICE_FUNC
+EIGEN_STRONG_INLINE const CwiseBinaryOp<internal::scalar_min_op<Scalar,Scalar>, const Derived,
+                                        const CwiseNullaryOp<internal::scalar_constant_op<Scalar>, PlainObject> >
+#ifdef EIGEN_PARSED_BY_DOXYGEN
+min
+#else
+(min)
+#endif
+(const Scalar &other) const
+{
+  return (min)(Derived::PlainObject::Constant(rows(), cols(), other));
+}
+
+/** \returns an expression of the coefficient-wise max of \c *this and \a other
+  *
+  * Example: \include Cwise_max.cpp
+  * Output: \verbinclude Cwise_max.out
+  *
+  * \sa min()
+  */
+EIGEN_MAKE_CWISE_BINARY_OP(max,max)
+
+/** \returns an expression of the coefficient-wise max of \c *this and scalar \a other
+  *
+  * \sa min()
+  */
+EIGEN_DEVICE_FUNC
+EIGEN_STRONG_INLINE const CwiseBinaryOp<internal::scalar_max_op<Scalar,Scalar>, const Derived,
+                                        const CwiseNullaryOp<internal::scalar_constant_op<Scalar>, PlainObject> >
+#ifdef EIGEN_PARSED_BY_DOXYGEN
+max
+#else
+(max)
+#endif
+(const Scalar &other) const
+{
+  return (max)(Derived::PlainObject::Constant(rows(), cols(), other));
+}
+
+/** \returns an expression of the coefficient-wise absdiff of \c *this and \a other
+  *
+  * Example: \include Cwise_absolute_difference.cpp
+  * Output: \verbinclude Cwise_absolute_difference.out
+  *
+  * \sa absolute_difference()
+  */
+EIGEN_MAKE_CWISE_BINARY_OP(absolute_difference,absolute_difference)
+
+/** \returns an expression of the coefficient-wise absolute_difference of \c *this and scalar \a other
+  *
+  * \sa absolute_difference()
+  */
+EIGEN_DEVICE_FUNC
+EIGEN_STRONG_INLINE const CwiseBinaryOp<internal::scalar_absolute_difference_op<Scalar,Scalar>, const Derived,
+                                        const CwiseNullaryOp<internal::scalar_constant_op<Scalar>, PlainObject> >
+#ifdef EIGEN_PARSED_BY_DOXYGEN
+absolute_difference
+#else
+(absolute_difference)
+#endif
+(const Scalar &other) const
+{
+  return (absolute_difference)(Derived::PlainObject::Constant(rows(), cols(), other));
+}
+
+/** \returns an expression of the coefficient-wise power of \c *this to the given array of \a exponents.
+  *
+  * This function computes the coefficient-wise power.
+  *
+  * Example: \include Cwise_array_power_array.cpp
+  * Output: \verbinclude Cwise_array_power_array.out
+  */
+EIGEN_MAKE_CWISE_BINARY_OP(pow,pow)
+
+#ifndef EIGEN_PARSED_BY_DOXYGEN
+EIGEN_MAKE_SCALAR_BINARY_OP_ONTHERIGHT(pow,pow)
+#else
+/** \returns an expression of the coefficients of \c *this rasied to the constant power \a exponent
+  *
+  * \tparam T is the scalar type of \a exponent. It must be compatible with the scalar type of the given expression.
+  *
+  * This function computes the coefficient-wise power. The function MatrixBase::pow() in the
+  * unsupported module MatrixFunctions computes the matrix power.
+  *
+  * Example: \include Cwise_pow.cpp
+  * Output: \verbinclude Cwise_pow.out
+  *
+  * \sa ArrayBase::pow(ArrayBase), square(), cube(), exp(), log()
+  */
+template<typename T>
+const CwiseBinaryOp<internal::scalar_pow_op<Scalar,T>,Derived,Constant<T> > pow(const T& exponent) const;
+#endif
+
+
+// TODO code generating macros could be moved to Macros.h and could include generation of documentation
+#define EIGEN_MAKE_CWISE_COMP_OP(OP, COMPARATOR) \
+template<typename OtherDerived> \
+EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const CwiseBinaryOp<internal::scalar_cmp_op<Scalar, typename OtherDerived::Scalar, internal::cmp_ ## COMPARATOR>, const Derived, const OtherDerived> \
+OP(const EIGEN_CURRENT_STORAGE_BASE_CLASS<OtherDerived> &other) const \
+{ \
+  return CwiseBinaryOp<internal::scalar_cmp_op<Scalar, typename OtherDerived::Scalar, internal::cmp_ ## COMPARATOR>, const Derived, const OtherDerived>(derived(), other.derived()); \
+}\
+typedef CwiseBinaryOp<internal::scalar_cmp_op<Scalar,Scalar, internal::cmp_ ## COMPARATOR>, const Derived, const CwiseNullaryOp<internal::scalar_constant_op<Scalar>, PlainObject> > Cmp ## COMPARATOR ## ReturnType; \
+typedef CwiseBinaryOp<internal::scalar_cmp_op<Scalar,Scalar, internal::cmp_ ## COMPARATOR>, const CwiseNullaryOp<internal::scalar_constant_op<Scalar>, PlainObject>, const Derived > RCmp ## COMPARATOR ## ReturnType; \
+EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Cmp ## COMPARATOR ## ReturnType \
+OP(const Scalar& s) const { \
+  return this->OP(Derived::PlainObject::Constant(rows(), cols(), s)); \
+} \
+EIGEN_DEVICE_FUNC friend EIGEN_STRONG_INLINE const RCmp ## COMPARATOR ## ReturnType \
+OP(const Scalar& s, const EIGEN_CURRENT_STORAGE_BASE_CLASS<Derived>& d) { \
+  return Derived::PlainObject::Constant(d.rows(), d.cols(), s).OP(d); \
+}
+
+#define EIGEN_MAKE_CWISE_COMP_R_OP(OP, R_OP, RCOMPARATOR) \
+template<typename OtherDerived> \
+EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const CwiseBinaryOp<internal::scalar_cmp_op<typename OtherDerived::Scalar, Scalar, internal::cmp_##RCOMPARATOR>, const OtherDerived, const Derived> \
+OP(const EIGEN_CURRENT_STORAGE_BASE_CLASS<OtherDerived> &other) const \
+{ \
+  return CwiseBinaryOp<internal::scalar_cmp_op<typename OtherDerived::Scalar, Scalar, internal::cmp_##RCOMPARATOR>, const OtherDerived, const Derived>(other.derived(), derived()); \
+} \
+EIGEN_DEVICE_FUNC \
+inline const RCmp ## RCOMPARATOR ## ReturnType \
+OP(const Scalar& s) const { \
+  return Derived::PlainObject::Constant(rows(), cols(), s).R_OP(*this); \
+} \
+friend inline const Cmp ## RCOMPARATOR ## ReturnType \
+OP(const Scalar& s, const Derived& d) { \
+  return d.R_OP(Derived::PlainObject::Constant(d.rows(), d.cols(), s)); \
+}
+
+
+
+/** \returns an expression of the coefficient-wise \< operator of *this and \a other
+  *
+  * Example: \include Cwise_less.cpp
+  * Output: \verbinclude Cwise_less.out
+  *
+  * \sa all(), any(), operator>(), operator<=()
+  */
+EIGEN_MAKE_CWISE_COMP_OP(operator<, LT)
+
+/** \returns an expression of the coefficient-wise \<= operator of *this and \a other
+  *
+  * Example: \include Cwise_less_equal.cpp
+  * Output: \verbinclude Cwise_less_equal.out
+  *
+  * \sa all(), any(), operator>=(), operator<()
+  */
+EIGEN_MAKE_CWISE_COMP_OP(operator<=, LE)
+
+/** \returns an expression of the coefficient-wise \> operator of *this and \a other
+  *
+  * Example: \include Cwise_greater.cpp
+  * Output: \verbinclude Cwise_greater.out
+  *
+  * \sa all(), any(), operator>=(), operator<()
+  */
+EIGEN_MAKE_CWISE_COMP_R_OP(operator>, operator<, LT)
+
+/** \returns an expression of the coefficient-wise \>= operator of *this and \a other
+  *
+  * Example: \include Cwise_greater_equal.cpp
+  * Output: \verbinclude Cwise_greater_equal.out
+  *
+  * \sa all(), any(), operator>(), operator<=()
+  */
+EIGEN_MAKE_CWISE_COMP_R_OP(operator>=, operator<=, LE)
+
+/** \returns an expression of the coefficient-wise == operator of *this and \a other
+  *
+  * \warning this performs an exact comparison, which is generally a bad idea with floating-point types.
+  * In order to check for equality between two vectors or matrices with floating-point coefficients, it is
+  * generally a far better idea to use a fuzzy comparison as provided by isApprox() and
+  * isMuchSmallerThan().
+  *
+  * Example: \include Cwise_equal_equal.cpp
+  * Output: \verbinclude Cwise_equal_equal.out
+  *
+  * \sa all(), any(), isApprox(), isMuchSmallerThan()
+  */
+EIGEN_MAKE_CWISE_COMP_OP(operator==, EQ)
+
+/** \returns an expression of the coefficient-wise != operator of *this and \a other
+  *
+  * \warning this performs an exact comparison, which is generally a bad idea with floating-point types.
+  * In order to check for equality between two vectors or matrices with floating-point coefficients, it is
+  * generally a far better idea to use a fuzzy comparison as provided by isApprox() and
+  * isMuchSmallerThan().
+  *
+  * Example: \include Cwise_not_equal.cpp
+  * Output: \verbinclude Cwise_not_equal.out
+  *
+  * \sa all(), any(), isApprox(), isMuchSmallerThan()
+  */
+EIGEN_MAKE_CWISE_COMP_OP(operator!=, NEQ)
+
+
+#undef EIGEN_MAKE_CWISE_COMP_OP
+#undef EIGEN_MAKE_CWISE_COMP_R_OP
+
+// scalar addition
+#ifndef EIGEN_PARSED_BY_DOXYGEN
+EIGEN_MAKE_SCALAR_BINARY_OP(operator+,sum)
+#else
+/** \returns an expression of \c *this with each coeff incremented by the constant \a scalar
+  *
+  * \tparam T is the scalar type of \a scalar. It must be compatible with the scalar type of the given expression.
+  *
+  * Example: \include Cwise_plus.cpp
+  * Output: \verbinclude Cwise_plus.out
+  *
+  * \sa operator+=(), operator-()
+  */
+template<typename T>
+const CwiseBinaryOp<internal::scalar_sum_op<Scalar,T>,Derived,Constant<T> > operator+(const T& scalar) const;
+/** \returns an expression of \a expr with each coeff incremented by the constant \a scalar
+  *
+  * \tparam T is the scalar type of \a scalar. It must be compatible with the scalar type of the given expression.
+  */
+template<typename T> friend
+const CwiseBinaryOp<internal::scalar_sum_op<T,Scalar>,Constant<T>,Derived> operator+(const T& scalar, const StorageBaseType& expr);
+#endif
+
+#ifndef EIGEN_PARSED_BY_DOXYGEN
+EIGEN_MAKE_SCALAR_BINARY_OP(operator-,difference)
+#else
+/** \returns an expression of \c *this with each coeff decremented by the constant \a scalar
+  *
+  * \tparam T is the scalar type of \a scalar. It must be compatible with the scalar type of the given expression.
+  *
+  * Example: \include Cwise_minus.cpp
+  * Output: \verbinclude Cwise_minus.out
+  *
+  * \sa operator+=(), operator-()
+  */
+template<typename T>
+const CwiseBinaryOp<internal::scalar_difference_op<Scalar,T>,Derived,Constant<T> > operator-(const T& scalar) const;
+/** \returns an expression of the constant matrix of value \a scalar decremented by the coefficients of \a expr
+  *
+  * \tparam T is the scalar type of \a scalar. It must be compatible with the scalar type of the given expression.
+  */
+template<typename T> friend
+const CwiseBinaryOp<internal::scalar_difference_op<T,Scalar>,Constant<T>,Derived> operator-(const T& scalar, const StorageBaseType& expr);
+#endif
+
+
+#ifndef EIGEN_PARSED_BY_DOXYGEN
+  EIGEN_MAKE_SCALAR_BINARY_OP_ONTHELEFT(operator/,quotient)
+#else
+  /**
+    * \brief Component-wise division of the scalar \a s by array elements of \a a.
+    *
+    * \tparam Scalar is the scalar type of \a x. It must be compatible with the scalar type of the given array expression (\c Derived::Scalar).
+    */
+  template<typename T> friend
+  inline const CwiseBinaryOp<internal::scalar_quotient_op<T,Scalar>,Constant<T>,Derived>
+  operator/(const T& s,const StorageBaseType& a);
+#endif
+
+/** \returns an expression of the coefficient-wise ^ operator of *this and \a other
+ *
+ * \warning this operator is for expression of bool only.
+ *
+ * Example: \include Cwise_boolean_xor.cpp
+ * Output: \verbinclude Cwise_boolean_xor.out
+ *
+ * \sa operator&&(), select()
+ */
+template<typename OtherDerived>
+EIGEN_DEVICE_FUNC
+inline const CwiseBinaryOp<internal::scalar_boolean_xor_op, const Derived, const OtherDerived>
+operator^(const EIGEN_CURRENT_STORAGE_BASE_CLASS<OtherDerived> &other) const
+{
+  EIGEN_STATIC_ASSERT((internal::is_same<bool,Scalar>::value && internal::is_same<bool,typename OtherDerived::Scalar>::value),
+                      THIS_METHOD_IS_ONLY_FOR_EXPRESSIONS_OF_BOOL);
+  return CwiseBinaryOp<internal::scalar_boolean_xor_op, const Derived, const OtherDerived>(derived(),other.derived());
+}
+
+// NOTE disabled until we agree on argument order
+#if 0
+/** \cpp11 \returns an expression of the coefficient-wise polygamma function.
+  *
+  * \specialfunctions_module
+  *
+  * It returns the \a n -th derivative of the digamma(psi) evaluated at \c *this.
+  *
+  * \warning Be careful with the order of the parameters: x.polygamma(n) is equivalent to polygamma(n,x)
+  *
+  * \sa Eigen::polygamma()
+  */
+template<typename DerivedN>
+inline const CwiseBinaryOp<internal::scalar_polygamma_op<Scalar>, const DerivedN, const Derived>
+polygamma(const EIGEN_CURRENT_STORAGE_BASE_CLASS<DerivedN> &n) const
+{
+  return CwiseBinaryOp<internal::scalar_polygamma_op<Scalar>, const DerivedN, const Derived>(n.derived(), this->derived());
+}
+#endif
+
+/** \returns an expression of the coefficient-wise zeta function.
+  *
+  * \specialfunctions_module
+  *
+  * It returns the Riemann zeta function of two arguments \c *this and \a q:
+  *
+  * \param q is the shift, it must be > 0
+  *
+  * \note *this is the exponent, it must be > 1.
+  * \note This function supports only float and double scalar types. To support other scalar types, the user has
+  * to provide implementations of zeta(T,T) for any scalar type T to be supported.
+  *
+  * This method is an alias for zeta(*this,q);
+  *
+  * \sa Eigen::zeta()
+  */
+template<typename DerivedQ>
+inline const CwiseBinaryOp<internal::scalar_zeta_op<Scalar>, const Derived, const DerivedQ>
+zeta(const EIGEN_CURRENT_STORAGE_BASE_CLASS<DerivedQ> &q) const
+{
+  return CwiseBinaryOp<internal::scalar_zeta_op<Scalar>, const Derived, const DerivedQ>(this->derived(), q.derived());
+}